RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032235
(144 letters)
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 131
Score = 102 bits (255), Expect = 1e-29
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 16 NGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTC 71
+G + + W QTL E+++ + + + K IQ +H+ +G+KG PP ++ EL
Sbjct: 3 SGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYN 62
Query: 72 PVKTDSSFWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
VK + S W +ED V+ + L K +K + W + +++ + E +L
Sbjct: 63 EVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
(KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 84.6 bits (209), Expect = 1e-22
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 21 FEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTD 76
+ W Q ++ + + +P + V KQ + S I + + + +LT + T+
Sbjct: 22 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 81
Query: 77 SSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDP 112
SS W+LE + + W + + G+ +D
Sbjct: 82 SSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDI 117
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 63.8 bits (155), Expect = 5e-15
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDS 77
++W QT ++ I + + NV + K + +K G L EL P+ +
Sbjct: 5 YDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 63
Query: 78 SFWTLEDDVMHITLTKRDKGQTWAS 102
S + + + I L K + W
Sbjct: 64 STFKVLSTKIEIKLKKPE-AVRWEK 87
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 50.8 bits (121), Expect = 8e-10
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 3/98 (3%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIEL--GIKGNPPYLNHELTCPVKTDSS 78
+W D + I + + + G +L + + S
Sbjct: 6 AKWYDRRDYVFIEFCVE-DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDS 64
Query: 79 FWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTD 116
D + L K + GQ+W + +L+ D
Sbjct: 65 KHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVD 102
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
USP19 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 33.4 bits (76), Expect = 0.003
Identities = 9/95 (9%), Positives = 28/95 (29%), Gaps = 17/95 (17%)
Query: 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG--NPPYLNH------------- 67
+++ D + +++ + + + + L + H
Sbjct: 25 YEKGPDSVVVHVYVK-EICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQV 83
Query: 68 ELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWAS 102
+L ++ + + + I L KR + W
Sbjct: 84 KLRNLIEPEQCTFCFTASRIDICLRKRQSQR-WGG 117
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 26.9 bits (59), Expect = 0.44
Identities = 12/85 (14%), Positives = 29/85 (34%)
Query: 19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
TV+ + L E+ + + P+ F + + + Y+ LT + S
Sbjct: 11 TVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGS 70
Query: 79 FWTLEDDVMHITLTKRDKGQTWASP 103
+ + D++ + +T
Sbjct: 71 YGLKDGDMVVLLQKDNVGLRTPGRT 95
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 24.7 bits (54), Expect = 2.1
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 75 TDSSFWTLEDDVMHITLTKRDKGQTW 100
T+ F ++ D+ + LT GQ W
Sbjct: 56 TEDYFPSVPDNAELVLLT---LGQAW 78
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 87
Score = 24.3 bits (53), Expect = 2.7
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 75 TDSSFWTLEDDVMHITLTKRDKGQTW 100
TD F L +D + LT G+TW
Sbjct: 59 TDDCFPGLPNDAELLLLT---AGETW 81
>d1f1ma_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease
spirochete (Borrelia burgdorferi), different strains
[TaxId: 139]}
Length = 162
Score = 24.3 bits (53), Expect = 5.5
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 42 SKQFYCKIQSKHIELGIKG 60
S++F K++ +H +LG +G
Sbjct: 92 SEEFTAKLKGEHTDLGKEG 110
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease
spirochete (Borrelia burgdorferi), different strains
[TaxId: 139]}
Length = 164
Score = 24.3 bits (53), Expect = 5.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 42 SKQFYCKIQSKHIELGIKG 60
S +F K++S+H LG+
Sbjct: 91 STEFTNKLKSEHAVLGLDN 109
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 159
Score = 23.9 bits (51), Expect = 6.9
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 16/47 (34%)
Query: 76 DSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
W L+D V MG QL + + + +
Sbjct: 98 SGQVWELKDAVAI----------------MGNAQLGKQLAPDDVENI 128
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 23.5 bits (50), Expect = 7.3
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPV--KTDSSFWTL 82
+TL + I++ P K KI+S+ + L + +
Sbjct: 6 KTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKID 65
Query: 83 EDDVMHITLTKRDKGQT 99
E + + + +TK T
Sbjct: 66 EKNFVVVMVTKPKAVST 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.436
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 570,150
Number of extensions: 23749
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 17
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)