BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032236
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q75AF5|IMH1_ASHGO Golgin IMH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=IMH1 PE=3 SV=2
Length = 887
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 18 ITPVGSKIA----ELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDEL---TDMKKT 70
+ VG+++ EL + E N ++ LK +LQ R++ TQ+ +++L D KK
Sbjct: 372 LKTVGNELVHARDELKQLNCEGTNEVERLKSELQELRTENSTQIATLKEQLQLLNDQKKA 431
Query: 71 LSVEVEQLRSEFQELRSTLQQQQDDVT 97
L +VEQ + + ++L S L + Q++V+
Sbjct: 432 LETDVEQHKRKMEDLESELLKSQENVS 458
>sp|Q29441|CNGA3_BOVIN Cyclic nucleotide-gated cation channel alpha-3 OS=Bos taurus
GN=CNGA3 PE=2 SV=1
Length = 706
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSK--LDTQVKIYRDELTDMKKTL 71
VGS I+ +N SRAE +I +KQ +Q + L+T+V + D L KKT+
Sbjct: 418 VGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKKTV 470
>sp|Q16281|CNGA3_HUMAN Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens
GN=CNGA3 PE=1 SV=2
Length = 694
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSK--LDTQVKIYRDELTDMKKTL 71
VGS I+ +N SRAE +I +KQ +Q + L+T+V + D L KKT+
Sbjct: 399 VGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKKTV 451
>sp|P12844|MYO3_CAEEL Myosin-3 OS=Caenorhabditis elegans GN=myo-3 PE=2 SV=1
Length = 1969
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQL 78
ES+A+L +I L ++Q W+++ D++ +E+ KK L ++V++L
Sbjct: 1365 ESKADLTRQISKLNAEIQQWKARFDSEGLNKLEEIEAAKKALQLKVQEL 1413
>sp|Q02455|MLP1_YEAST Protein MLP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MLP1 PE=1 SV=2
Length = 1875
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV-- 73
E+ ++I L + + L ++I LK+ + N ++LD Q K E D KK +S+
Sbjct: 946 ESFKDFTNQIKNLTDEKTSLEDKISLLKEQMFNLNNELDLQKKGMEKEKADFKKRISILQ 1005
Query: 74 ----EVEQLRSEFQELRSTLQQQQDDVT 97
EVE ++SE++ S +Q D T
Sbjct: 1006 NNNKEVEAVKSEYESKLSKIQNDLDQQT 1033
>sp|Q60LV4|MYO3_CAEBR Myosin-3 OS=Caenorhabditis briggsae GN=myo-3 PE=3 SV=1
Length = 1969
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQL 78
ES+A+L +I L ++Q W+++ D++ +E+ KK L ++V++L
Sbjct: 1365 ESKADLTRQISKLNAEIQQWKARFDSEGLNKLEEIEAAKKALQLKVQEL 1413
>sp|Q6FKB4|EIS1_CANGA Eisosome protein 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=EIS1 PE=3 SV=1
Length = 885
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 18 ITPVGSKIAELNESR----AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV 73
I+PV +++E E++ E+ RI ++DL NW++ + R + T+ K L V
Sbjct: 390 ISPVLGEVSERAEAQRAADTEIATRIATYEKDLSNWKN-------LQRTKQTNDKNVLEV 442
Query: 74 EVEQLRSEFQELRSTLQQQQDDV 96
+++ E QE + Q++ D++
Sbjct: 443 NSKRIALEKQEAKDAAQKKYDEM 465
>sp|C0Z9F1|MUTS2_BREBN MutS2 protein OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC
100599) GN=mutS2 PE=3 SV=1
Length = 785
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 38 RIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVT 97
RI+GL++ L+T+++ DE D+ + S+E+ Q+R E ++L S ++++ D +T
Sbjct: 124 RIEGLRE--------LETEIRRCVDENGDILDSASLELRQVRQEIRQLESRIREKLDQMT 175
Query: 98 AS 99
S
Sbjct: 176 RS 177
>sp|Q06988|TBB2_NEIMI Transferrin-binding protein 2 OS=Neisseria meningitidis serogroup B
GN=tbpB PE=1 SV=1
Length = 599
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 62 DELTDMKKTL--SVEVEQLRSEFQE--LRSTLQQQQDDVTASLRNLGLQDFSGDDKERKD 117
D D+KK L VE+ L SE + + ++Q T NL F KE KD
Sbjct: 380 DSFGDVKKLLVDGVELSLLPSEGNKAAFQHEIEQNGVKATVCCSNLDYMSFGKLSKENKD 439
Query: 118 DPNINGKDEEVHAIATPVEDNAK 140
D + G V +A E NAK
Sbjct: 440 DMFLQGVRTPVSDVAARTEANAK 462
>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1
PE=1 SV=2
Length = 1438
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 49 WRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103
W+SKL+T + ++ + ++K + S + +EF EL++ +++ + D + NL
Sbjct: 623 WKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENL 677
>sp|P37276|DYHC_DROME Dynein heavy chain, cytoplasmic OS=Drosophila melanogaster GN=Dhc64C
PE=2 SV=2
Length = 4639
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 25 IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQE 84
IA E A+L+++ Q +K DL+N ++K+D + + K+L++E E+ S +
Sbjct: 3430 IAAYKEEYAQLISQAQAIKTDLENVQAKVDRSIALL--------KSLNIERERWESTSET 3481
Query: 85 LRSTLQQQQDDVTAS 99
+S + DV S
Sbjct: 3482 FKSQMSTIIGDVLLS 3496
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=USO1 PE=1
SV=2
Length = 1790
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 28 LNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS 87
LN S + L L+ +L+N R LD E+T ++ L + ++ ++ E +S
Sbjct: 781 LNSSHSSLKENFSILETELKNVRDSLD--------EMTQLRDVLETKDKENQTALLEYKS 832
Query: 88 TLQQQQDDVTASLRNL--GLQDFSGDDKERKDDPNINGKDEEVHAIA---TPVEDNAK 140
T+ +Q+D S++ L GL+ K+ +D N GKD + A++ VE+N K
Sbjct: 833 TIHKQED----SIKTLEKGLETILSQKKKAEDGINKMGKD--LFALSREMQAVEENCK 884
>sp|Q6ZQ12|NINL_MOUSE Ninein-like protein OS=Mus musculus GN=Ninl PE=2 SV=3
Length = 1394
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 39 IQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTA 98
++ +K+ Q R +L+T+V Y E+ MK+ + +++ FQ S L+ Q+ D+ A
Sbjct: 621 VEQMKEHYQELRMQLETKVNYYEKEIEVMKRNFEKDKKEMEQAFQLEVSVLEGQKADLEA 680
>sp|Q503N2|SPC24_DANRE Kinetochore protein Spc24 OS=Danio rerio GN=spc24 PE=2 SV=2
Length = 202
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 15/78 (19%)
Query: 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSK---LDTQVKIYRDELTDMKKTLSVEVEQ 77
VG K+ +L++ +++++ I ++Q++Q +SK LD++++ + EL E+
Sbjct: 67 VGQKLLDLDQQKSQMMQEIMKMEQEVQRSQSKSQNLDSELEFLQKEL-----------ER 115
Query: 78 LRSEFQELRSTLQQQQDD 95
LR QE++ TLQQ+ D+
Sbjct: 116 LRDAEQEIQ-TLQQEVDE 132
>sp|P02545|LMNA_HUMAN Prelamin-A/C OS=Homo sapiens GN=LMNA PE=1 SV=1
Length = 664
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 25/121 (20%)
Query: 2 ANVESDSTPSVPKKENITPVGSK--IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKI 59
+ ++ STP P + IT + K + ELN+ A ++R++ L+ + R ++ ++
Sbjct: 12 SGAQASSTPLSPTR--ITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEV 69
Query: 60 -----------YRDELTDMKKT----------LSVEVEQLRSEFQELRSTLQQQQDDVTA 98
Y EL D +KT L +E+ ++R EF+EL++ +++ D+ A
Sbjct: 70 VSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIA 129
Query: 99 S 99
+
Sbjct: 130 A 130
>sp|Q3ZD69|LMNA_PIG Prelamin-A/C OS=Sus scrofa GN=LMNA PE=3 SV=1
Length = 664
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 25/121 (20%)
Query: 2 ANVESDSTPSVPKKENITPVGSK--IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKI 59
+ ++ STP P + IT + K + ELN+ A ++R++ L+ + R ++ ++
Sbjct: 12 SGAQASSTPLSPTR--ITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEV 69
Query: 60 -----------YRDELTDMKKT----------LSVEVEQLRSEFQELRSTLQQQQDDVTA 98
Y EL D +KT L +E+ ++R EF+EL++ +++ D+ A
Sbjct: 70 VSREVSGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMA 129
Query: 99 S 99
+
Sbjct: 130 A 130
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spo15 PE=1 SV=1
Length = 1957
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEV 75
+N + + + +LNES EL N Q + + L++ SKL Q+++ R + TLS E
Sbjct: 602 QNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQ-QLQLERANFEQKESTLSDEN 660
Query: 76 EQLRS---EFQELRSTLQQQQDDVTASLRNL 103
LR+ + +E +L ++Q+DV + +N+
Sbjct: 661 NDLRTKLLKLEESNKSLIKKQEDVDSLEKNI 691
>sp|P34609|JIP_CAEEL JNK-interacting protein OS=Caenorhabditis elegans GN=unc-16 PE=1
SV=3
Length = 1157
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 5 ESDSTPSVPKKEN-------ITPVGSKIAELNESRAELL---NRIQGLKQDLQNWRSKLD 54
E+D T SV KEN +T +G ++ L + +ELL N + +K DL N +L+
Sbjct: 309 EADETTSVDPKENNDLLGADLTGMGREVENLIKENSELLDMKNALNIVKNDLINQVDELN 368
Query: 55 TQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ--------QQQDDVTASLR 101
++ I RDE + EQ+ +E+++ Q Q++DDV ++R
Sbjct: 369 SENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEEDDVPMAMR 423
>sp|P48679|LMNA_RAT Prelamin-A/C OS=Rattus norvegicus GN=Lmna PE=1 SV=1
Length = 665
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 25/121 (20%)
Query: 2 ANVESDSTPSVPKKENITPVGSK--IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKI 59
+ ++ STP P + IT + K + ELN+ A ++R++ L+ + R ++ ++
Sbjct: 12 SGAQASSTPLSPTR--ITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEV 69
Query: 60 -----------YRDELTDMKKT----------LSVEVEQLRSEFQELRSTLQQQQDDVTA 98
Y EL D +KT L +E+ ++R EF+EL++ +++ D+ A
Sbjct: 70 VSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLLA 129
Query: 99 S 99
+
Sbjct: 130 A 130
>sp|P48678|LMNA_MOUSE Prelamin-A/C OS=Mus musculus GN=Lmna PE=1 SV=2
Length = 665
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 25/121 (20%)
Query: 2 ANVESDSTPSVPKKENITPVGSK--IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKI 59
+ ++ STP P + IT + K + ELN+ A ++R++ L+ + R ++ ++
Sbjct: 12 SGAQASSTPLSPTR--ITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEV 69
Query: 60 -----------YRDELTDMKKT----------LSVEVEQLRSEFQELRSTLQQQQDDVTA 98
Y EL D +KT L +E+ ++R EF+EL++ +++ D+ A
Sbjct: 70 VSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLLA 129
Query: 99 S 99
+
Sbjct: 130 A 130
>sp|Q6A078|CE290_MOUSE Centrosomal protein of 290 kDa OS=Mus musculus GN=Cep290 PE=1 SV=2
Length = 2472
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 44/71 (61%)
Query: 25 IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQE 84
+AE ++S + LL +++ + +DL+ + + +V+ + + +++T + EV+++++E ++
Sbjct: 1624 VAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKAEVED 1683
Query: 85 LRSTLQQQQDD 95
LR L Q D
Sbjct: 1684 LRHALAQAHKD 1694
>sp|Q6CJZ6|MED2_KLULA Mediator of RNA polymerase II transcription subunit 2
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MED2 PE=3
SV=1
Length = 280
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 65 TDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLGLQDFSGDDKERKDDPNINGK 124
TD+ + + SEF +L D + + GLQ+ SG + E+K+DP IN
Sbjct: 173 TDLPSAGITQAQSFNSEFGDLNGMDLSMFDSMDNQVGFGGLQNTSGGN-EKKNDPQINFN 231
Query: 125 DEEVHAIATPVEDNA 139
D A V +N
Sbjct: 232 DTNAPPSAVNVPENG 246
>sp|Q6FY25|SP110_CANGA Spindle pole body component 110 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPC110 PE=3 SV=1
Length = 872
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 28/118 (23%)
Query: 18 ITPVGSKIAELNESRAELLNRIQGLKQ---------------------DLQNWRSKLDTQ 56
I + + I +LNE R ++LN+++ L+Q DL+N +S D++
Sbjct: 619 IRRLEADIVQLNEERNDILNKLRSLEQAKDRYKSEMKDALETISRLRVDLENNKSLKDSK 678
Query: 57 VKI-------YRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLGLQD 107
+ +DE MKK E+ +L+S +EL S LQ++ D ++ N L D
Sbjct: 679 DSLIERKYEKLKDEFKLMKKGYLDEMIKLQSRNRELNSDLQKRMDPSISTSANTTLAD 736
>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus
GN=CLIP1 PE=2 SV=1
Length = 1433
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 34/58 (58%)
Query: 49 WRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLGLQ 106
W+SKL++ + ++ + ++K + + V +EF EL++ +++ + D + NL L+
Sbjct: 613 WKSKLESAIASHQQAMEELKVSFNKGVGAQTAEFAELKTQMEKVKLDYENEMSNLKLK 670
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.125 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,229,885
Number of Sequences: 539616
Number of extensions: 1952637
Number of successful extensions: 9525
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 620
Number of HSP's that attempted gapping in prelim test: 8444
Number of HSP's gapped (non-prelim): 1694
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)