Query 032236
Match_columns 144
No_of_seqs 33 out of 35
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 11:24:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14712 Snapin_Pallidin: Snap 96.0 0.1 2.2E-06 35.9 8.9 69 16-89 14-87 (92)
2 PF05791 Bacillus_HBL: Bacillu 95.7 0.095 2.1E-06 41.1 8.6 71 22-92 109-182 (184)
3 PF07798 DUF1640: Protein of u 94.8 0.73 1.6E-05 35.7 10.8 59 43-101 46-108 (177)
4 PF07798 DUF1640: Protein of u 94.6 1.2 2.7E-05 34.4 11.7 56 27-82 48-107 (177)
5 KOG0161 Myosin class II heavy 94.3 0.49 1.1E-05 49.6 11.4 83 18-100 1331-1423(1930)
6 PF12325 TMF_TATA_bd: TATA ele 93.5 2.3 5.1E-05 32.3 11.1 75 20-95 34-118 (120)
7 PRK11637 AmiB activator; Provi 93.5 1.4 3.1E-05 37.9 11.0 83 21-107 45-137 (428)
8 PF06810 Phage_GP20: Phage min 92.9 0.71 1.5E-05 35.9 7.7 54 50-104 29-82 (155)
9 PF11932 DUF3450: Protein of u 92.8 2.3 5E-05 34.2 10.7 64 21-92 40-103 (251)
10 PF00038 Filament: Intermediat 92.8 2.2 4.9E-05 34.4 10.6 84 18-101 56-152 (312)
11 PF05769 DUF837: Protein of un 92.7 1.7 3.8E-05 34.7 9.8 75 20-102 14-99 (181)
12 COG1340 Uncharacterized archae 92.0 2.5 5.4E-05 36.9 10.5 84 18-101 8-97 (294)
13 PF12128 DUF3584: Protein of u 91.6 3.3 7.1E-05 40.7 12.0 80 21-100 676-759 (1201)
14 smart00502 BBC B-Box C-termina 91.5 3.1 6.8E-05 28.1 11.1 80 20-102 11-90 (127)
15 PHA02562 46 endonuclease subun 91.4 3.5 7.6E-05 35.6 10.8 51 54-104 194-247 (562)
16 PF05008 V-SNARE: Vesicle tran 91.4 3 6.5E-05 27.8 8.8 58 30-90 21-78 (79)
17 PF07106 TBPIP: Tat binding pr 90.7 5.6 0.00012 30.2 10.2 36 15-50 71-106 (169)
18 smart00787 Spc7 Spc7 kinetocho 90.7 5.7 0.00012 34.2 11.3 24 56-79 169-192 (312)
19 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.2 6.1 0.00013 29.3 11.5 46 19-64 6-51 (132)
20 COG3883 Uncharacterized protei 90.0 3.5 7.7E-05 35.5 9.5 69 39-107 43-114 (265)
21 TIGR03752 conj_TIGR03752 integ 89.9 6 0.00013 36.6 11.5 63 23-85 66-135 (472)
22 PF05852 DUF848: Gammaherpesvi 89.7 6.8 0.00015 31.2 10.3 65 34-99 45-115 (146)
23 smart00502 BBC B-Box C-termina 89.5 4.9 0.00011 27.2 11.7 53 41-93 14-66 (127)
24 COG1196 Smc Chromosome segrega 89.4 6 0.00013 38.6 11.6 67 19-86 740-806 (1163)
25 PF00038 Filament: Intermediat 89.4 5.1 0.00011 32.4 9.5 67 24-90 5-92 (312)
26 PRK10884 SH3 domain-containing 89.2 5.3 0.00012 32.6 9.6 18 71-88 130-147 (206)
27 TIGR03752 conj_TIGR03752 integ 89.1 4 8.7E-05 37.8 9.7 61 30-94 59-137 (472)
28 PF04156 IncA: IncA protein; 88.9 8.4 0.00018 29.2 11.5 12 75-86 139-150 (191)
29 TIGR03017 EpsF chain length de 88.8 3.9 8.4E-05 34.5 8.8 49 15-63 253-308 (444)
30 PF08317 Spc7: Spc7 kinetochor 88.7 11 0.00024 31.7 11.5 67 21-87 168-244 (325)
31 PF08317 Spc7: Spc7 kinetochor 88.6 13 0.00029 31.3 11.8 54 25-79 144-197 (325)
32 PF15397 DUF4618: Domain of un 88.4 5.7 0.00012 34.0 9.6 61 38-98 64-145 (258)
33 PRK11637 AmiB activator; Provi 88.3 9.9 0.00021 32.8 11.1 49 42-90 199-250 (428)
34 PF10211 Ax_dynein_light: Axon 88.3 8.1 0.00018 30.7 9.9 59 32-90 129-187 (189)
35 PF06008 Laminin_I: Laminin Do 88.2 12 0.00027 30.2 11.7 75 26-101 153-244 (264)
36 PF15272 BBP1_C: Spindle pole 88.0 5.2 0.00011 33.2 8.9 76 23-106 52-147 (196)
37 PF01576 Myosin_tail_1: Myosin 87.9 0.16 3.4E-06 48.3 0.0 87 17-103 272-368 (859)
38 KOG0250 DNA repair protein RAD 87.2 7.2 0.00016 39.4 10.8 95 19-113 319-432 (1074)
39 PHA02562 46 endonuclease subun 85.7 15 0.00032 31.8 10.8 66 23-88 181-249 (562)
40 KOG4674 Uncharacterized conser 85.0 7.9 0.00017 41.0 10.1 89 16-104 1257-1359(1822)
41 PF05791 Bacillus_HBL: Bacillu 84.8 13 0.00028 29.2 9.3 61 29-93 102-162 (184)
42 PF03962 Mnd1: Mnd1 family; I 84.3 13 0.00028 29.6 9.1 67 24-90 77-152 (188)
43 PRK04098 sec-independent trans 83.5 5.6 0.00012 32.0 6.8 20 61-80 60-79 (158)
44 PF03961 DUF342: Protein of un 83.4 14 0.00031 32.2 9.8 71 21-91 332-407 (451)
45 PRK08476 F0F1 ATP synthase sub 83.2 17 0.00037 27.3 11.5 83 18-100 29-134 (141)
46 PF12128 DUF3584: Protein of u 83.1 22 0.00047 35.2 11.8 38 42-79 661-698 (1201)
47 PF05130 FlgN: FlgN protein; 83.1 13 0.00027 25.6 8.7 83 23-105 37-127 (143)
48 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.6 15 0.00034 27.2 8.5 52 36-87 58-112 (132)
49 PF05008 V-SNARE: Vesicle tran 82.6 9.9 0.00021 25.2 6.8 45 27-71 29-77 (79)
50 COG1340 Uncharacterized archae 82.5 10 0.00023 33.2 8.6 64 23-90 34-100 (294)
51 KOG2685 Cystoskeletal protein 82.2 8.9 0.00019 35.3 8.3 24 45-68 282-305 (421)
52 PHA03161 hypothetical protein; 82.2 17 0.00036 29.4 9.0 64 33-97 44-113 (150)
53 PRK11546 zraP zinc resistance 82.0 12 0.00025 29.7 7.9 71 23-102 47-118 (143)
54 PF09731 Mitofilin: Mitochondr 81.9 31 0.00066 30.8 11.4 18 85-102 331-348 (582)
55 TIGR03017 EpsF chain length de 81.9 18 0.00039 30.6 9.5 45 34-78 258-305 (444)
56 PRK15422 septal ring assembly 81.9 3.6 7.9E-05 30.1 4.7 35 23-57 39-73 (79)
57 PF07195 FliD_C: Flagellar hoo 81.8 6.9 0.00015 31.3 6.7 46 46-91 191-236 (239)
58 PF04871 Uso1_p115_C: Uso1 / p 81.7 21 0.00046 27.3 12.9 17 95-112 102-118 (136)
59 PF10168 Nup88: Nuclear pore c 81.4 11 0.00025 35.8 9.0 25 22-46 599-623 (717)
60 PF09755 DUF2046: Uncharacteri 80.1 19 0.0004 31.9 9.3 55 34-95 81-135 (310)
61 PF10267 Tmemb_cc2: Predicted 80.0 36 0.00078 30.7 11.3 85 13-104 209-318 (395)
62 PF09787 Golgin_A5: Golgin sub 80.0 15 0.00031 33.1 8.8 34 26-59 302-335 (511)
63 PF05529 Bap31: B-cell recepto 79.9 21 0.00045 27.6 8.6 62 35-96 116-187 (192)
64 PF05701 WEMBL: Weak chloropla 79.7 36 0.00077 30.8 11.2 59 37-95 249-324 (522)
65 PF14775 NYD-SP28_assoc: Sperm 79.7 9.3 0.0002 25.9 5.9 45 46-92 15-59 (60)
66 PRK04778 septation ring format 79.6 12 0.00026 33.8 8.3 79 19-101 386-465 (569)
67 PF10473 CENP-F_leu_zip: Leuci 79.3 28 0.00062 27.2 10.7 75 20-94 7-94 (140)
68 PF14282 FlxA: FlxA-like prote 79.0 22 0.00048 25.9 8.9 59 22-93 18-78 (106)
69 PRK10884 SH3 domain-containing 78.9 34 0.00074 27.9 11.6 17 71-87 137-153 (206)
70 PF10186 Atg14: UV radiation r 78.5 30 0.00065 27.1 11.7 23 81-103 134-156 (302)
71 PRK15396 murein lipoprotein; P 78.4 6.3 0.00014 28.3 5.0 45 17-61 26-77 (78)
72 PF05529 Bap31: B-cell recepto 78.4 21 0.00046 27.5 8.3 8 61-68 160-167 (192)
73 PF14643 DUF4455: Domain of un 78.1 13 0.00028 33.0 7.9 82 14-95 206-293 (473)
74 PRK06569 F0F1 ATP synthase sub 77.8 33 0.00072 27.3 11.4 83 19-101 33-138 (155)
75 PRK03918 chromosome segregatio 77.8 39 0.00084 31.1 10.9 18 32-49 534-551 (880)
76 PF10211 Ax_dynein_light: Axon 77.7 20 0.00043 28.6 8.1 40 50-89 122-164 (189)
77 TIGR03185 DNA_S_dndD DNA sulfu 77.3 29 0.00063 31.7 10.0 72 21-92 207-288 (650)
78 TIGR03545 conserved hypothetic 76.9 11 0.00025 34.8 7.4 27 28-54 173-201 (555)
79 PRK11546 zraP zinc resistance 76.9 24 0.00053 27.9 8.3 53 52-104 51-109 (143)
80 PRK09039 hypothetical protein; 76.3 46 0.001 28.7 10.5 29 41-69 95-130 (343)
81 PF05700 BCAS2: Breast carcino 75.8 40 0.00087 27.1 11.8 91 11-105 92-182 (221)
82 cd00176 SPEC Spectrin repeats, 75.7 25 0.00055 24.8 8.9 67 33-99 36-105 (213)
83 PRK02224 chromosome segregatio 75.6 41 0.00089 31.1 10.6 21 72-92 714-734 (880)
84 PF06005 DUF904: Protein of un 75.4 12 0.00025 26.3 5.6 60 26-93 7-66 (72)
85 PF07888 CALCOCO1: Calcium bin 75.3 56 0.0012 30.9 11.5 25 22-46 142-166 (546)
86 PF01920 Prefoldin_2: Prefoldi 75.1 23 0.0005 24.0 10.6 78 22-99 4-102 (106)
87 KOG0804 Cytoplasmic Zn-finger 75.1 35 0.00075 32.2 10.0 58 48-105 382-449 (493)
88 PRK02224 chromosome segregatio 75.0 35 0.00076 31.6 10.0 43 46-88 178-221 (880)
89 KOG1962 B-cell receptor-associ 74.8 26 0.00055 29.5 8.3 59 35-98 112-183 (216)
90 PF09177 Syntaxin-6_N: Syntaxi 74.5 27 0.00058 24.5 7.4 60 30-91 5-64 (97)
91 TIGR01005 eps_transp_fam exopo 74.3 36 0.00078 31.3 9.8 17 22-38 287-303 (754)
92 PF05929 Phage_GPO: Phage caps 74.0 18 0.00039 31.2 7.5 29 62-90 224-252 (276)
93 PRK10803 tol-pal system protei 74.0 12 0.00026 30.9 6.2 37 19-55 43-79 (263)
94 PF06818 Fez1: Fez1; InterPro 73.7 46 0.00099 27.8 9.5 27 70-96 135-161 (202)
95 PF15070 GOLGA2L5: Putative go 73.4 19 0.0004 34.0 7.9 74 19-92 32-106 (617)
96 TIGR00606 rad50 rad50. This fa 73.4 32 0.00069 34.2 9.8 28 60-87 921-948 (1311)
97 PF04111 APG6: Autophagy prote 73.3 58 0.0013 27.8 10.5 86 14-104 41-133 (314)
98 PF13166 AAA_13: AAA domain 73.0 68 0.0015 28.9 11.0 91 19-109 366-477 (712)
99 PF10498 IFT57: Intra-flagella 73.0 11 0.00025 33.1 6.1 61 42-103 211-271 (359)
100 PF10168 Nup88: Nuclear pore c 72.9 49 0.0011 31.7 10.7 30 63-92 629-658 (717)
101 PF05266 DUF724: Protein of un 72.4 50 0.0011 26.7 11.4 73 17-89 87-175 (190)
102 PF10458 Val_tRNA-synt_C: Valy 72.4 26 0.00055 23.3 6.5 55 45-103 1-65 (66)
103 PRK09039 hypothetical protein; 72.4 47 0.001 28.6 9.6 31 23-53 123-153 (343)
104 PF04977 DivIC: Septum formati 71.7 16 0.00035 23.6 5.3 12 74-85 39-50 (80)
105 PRK10361 DNA recombination pro 71.0 89 0.0019 29.0 11.6 34 71-104 86-119 (475)
106 PF15397 DUF4618: Domain of un 70.5 52 0.0011 28.3 9.4 73 15-87 5-77 (258)
107 PF07888 CALCOCO1: Calcium bin 70.3 77 0.0017 30.0 11.2 32 22-53 205-236 (546)
108 PRK13729 conjugal transfer pil 70.3 19 0.0004 33.5 7.1 25 23-47 69-93 (475)
109 PF09731 Mitofilin: Mitochondr 70.1 78 0.0017 28.3 10.7 46 49-94 274-328 (582)
110 TIGR01000 bacteriocin_acc bact 69.4 18 0.00038 31.5 6.4 25 27-51 169-193 (457)
111 PF02841 GBP_C: Guanylate-bind 69.3 55 0.0012 27.1 9.1 71 24-94 205-276 (297)
112 smart00787 Spc7 Spc7 kinetocho 69.3 75 0.0016 27.4 11.1 34 18-51 160-193 (312)
113 PF14197 Cep57_CLD_2: Centroso 69.2 35 0.00076 23.6 6.7 25 45-69 9-33 (69)
114 KOG0239 Kinesin (KAR3 subfamil 68.7 67 0.0015 30.7 10.5 71 19-89 223-296 (670)
115 TIGR00414 serS seryl-tRNA synt 68.5 62 0.0013 28.6 9.7 84 22-109 29-115 (418)
116 PF02403 Seryl_tRNA_N: Seryl-t 68.4 38 0.00082 23.7 9.9 67 20-97 26-98 (108)
117 PF07106 TBPIP: Tat binding pr 68.2 50 0.0011 25.0 8.4 57 22-89 71-132 (169)
118 PF10018 Med4: Vitamin-D-recep 68.2 32 0.00069 27.0 7.1 39 33-75 25-63 (188)
119 COG1579 Zn-ribbon protein, pos 68.1 48 0.001 28.1 8.6 63 19-85 99-161 (239)
120 PF07352 Phage_Mu_Gam: Bacteri 68.0 25 0.00055 26.5 6.3 53 35-94 8-60 (149)
121 PF06156 DUF972: Protein of un 68.0 43 0.00094 24.9 7.5 44 51-94 11-57 (107)
122 COG2433 Uncharacterized conser 67.6 58 0.0013 31.7 9.9 71 18-93 424-494 (652)
123 PF05622 HOOK: HOOK protein; 67.3 1.8 3.9E-05 40.0 0.0 72 14-86 323-397 (713)
124 PF09755 DUF2046: Uncharacteri 67.0 86 0.0019 27.8 10.2 80 21-100 82-183 (310)
125 TIGR00606 rad50 rad50. This fa 66.9 90 0.002 31.2 11.3 47 56-102 896-945 (1311)
126 TIGR01010 BexC_CtrB_KpsE polys 66.7 76 0.0016 26.5 9.9 22 74-95 243-264 (362)
127 PTZ00007 (NAP-L) nucleosome as 66.4 37 0.0008 30.0 7.9 73 8-98 15-87 (337)
128 PF07989 Microtub_assoc: Micro 66.4 40 0.00088 23.6 6.7 27 69-95 46-72 (75)
129 PRK14549 50S ribosomal protein 66.4 25 0.00053 24.2 5.5 21 31-51 13-33 (69)
130 PF02646 RmuC: RmuC family; I 66.2 49 0.0011 27.8 8.3 20 71-90 46-65 (304)
131 PRK10780 periplasmic chaperone 66.0 50 0.0011 25.2 7.6 27 41-67 47-73 (165)
132 PF05227 CHASE3: CHASE3 domain 65.9 41 0.00089 23.2 9.4 71 24-94 57-133 (138)
133 PF08614 ATG16: Autophagy prot 65.6 31 0.00068 26.9 6.6 70 21-94 79-151 (194)
134 TIGR03545 conserved hypothetic 65.4 82 0.0018 29.4 10.2 14 56-69 192-205 (555)
135 TIGR00012 L29 ribosomal protei 65.1 36 0.00078 22.2 6.0 23 31-53 6-28 (55)
136 cd00179 SynN Syntaxin N-termin 65.0 49 0.0011 23.8 8.1 21 62-82 51-71 (151)
137 PF10243 MIP-T3: Microtubule-b 64.6 2.2 4.7E-05 38.3 0.0 78 18-99 437-521 (539)
138 smart00503 SynN Syntaxin N-ter 64.6 43 0.00092 22.9 9.0 20 34-53 5-24 (117)
139 PF04912 Dynamitin: Dynamitin 64.5 59 0.0013 28.0 8.6 11 34-44 316-326 (388)
140 PRK00286 xseA exodeoxyribonucl 64.5 95 0.0021 26.9 10.6 65 8-72 249-322 (438)
141 KOG4438 Centromere-associated 64.4 47 0.001 31.0 8.4 91 14-104 171-275 (446)
142 PRK04098 sec-independent trans 64.3 49 0.0011 26.7 7.6 50 38-87 55-109 (158)
143 PRK14147 heat shock protein Gr 64.3 71 0.0015 25.4 10.8 91 18-108 20-118 (172)
144 PF06657 Cep57_MT_bd: Centroso 64.3 18 0.00038 25.6 4.5 35 61-95 12-46 (79)
145 PF02050 FliJ: Flagellar FliJ 64.2 39 0.00084 22.3 9.1 29 65-93 58-86 (123)
146 PF14362 DUF4407: Domain of un 63.8 81 0.0017 25.8 9.2 27 71-97 187-213 (301)
147 PF03938 OmpH: Outer membrane 63.8 55 0.0012 23.9 9.3 12 80-91 83-94 (158)
148 TIGR01843 type_I_hlyD type I s 63.3 82 0.0018 25.7 9.6 26 22-47 80-105 (423)
149 PF11740 KfrA_N: Plasmid repli 62.8 50 0.0011 23.1 7.2 67 37-103 32-114 (120)
150 PF15450 DUF4631: Domain of un 62.4 96 0.0021 29.6 10.1 88 19-106 340-427 (531)
151 PF07464 ApoLp-III: Apolipopho 62.2 20 0.00042 28.4 4.9 63 42-104 39-112 (155)
152 PF04728 LPP: Lipoprotein leuc 62.1 38 0.00082 23.3 5.7 27 69-95 13-39 (56)
153 KOG4657 Uncharacterized conser 62.0 1.1E+02 0.0024 26.7 10.1 79 26-109 65-145 (246)
154 PF09730 BicD: Microtubule-ass 61.9 1.3E+02 0.0028 29.4 11.2 76 16-91 13-94 (717)
155 cd00632 Prefoldin_beta Prefold 61.8 47 0.001 23.5 6.5 25 67-91 78-102 (105)
156 PF06818 Fez1: Fez1; InterPro 61.6 72 0.0016 26.7 8.3 29 26-54 17-48 (202)
157 COG1196 Smc Chromosome segrega 61.3 1.1E+02 0.0024 30.2 10.8 53 19-71 400-455 (1163)
158 PF09304 Cortex-I_coil: Cortex 61.1 74 0.0016 24.5 9.0 23 27-49 6-28 (107)
159 PF04156 IncA: IncA protein; 61.0 70 0.0015 24.2 11.7 12 57-68 139-150 (191)
160 KOG2010 Double stranded RNA bi 61.0 66 0.0014 29.6 8.6 71 22-92 110-201 (405)
161 TIGR01005 eps_transp_fam exopo 60.6 1.4E+02 0.003 27.5 12.2 23 57-79 318-340 (754)
162 PRK14161 heat shock protein Gr 60.4 88 0.0019 25.1 9.5 92 17-108 20-123 (178)
163 PF09787 Golgin_A5: Golgin sub 60.2 1.3E+02 0.0029 27.1 10.3 64 35-98 293-362 (511)
164 KOG3156 Uncharacterized membra 60.0 1.1E+02 0.0024 26.2 9.7 64 31-101 88-151 (220)
165 COG4467 Regulator of replicati 59.9 56 0.0012 25.6 6.9 49 43-91 3-54 (114)
166 COG4026 Uncharacterized protei 59.6 53 0.0011 29.0 7.5 66 18-87 137-205 (290)
167 PRK00306 50S ribosomal protein 59.4 51 0.0011 22.1 6.0 51 31-92 10-60 (66)
168 smart00806 AIP3 Actin interact 59.2 97 0.0021 28.7 9.4 79 25-104 73-186 (426)
169 TIGR01000 bacteriocin_acc bact 59.2 1.2E+02 0.0026 26.4 11.2 32 20-51 169-200 (457)
170 PF03962 Mnd1: Mnd1 family; I 59.1 76 0.0016 25.3 7.8 28 21-48 67-94 (188)
171 TIGR01069 mutS2 MutS2 family p 58.1 1.7E+02 0.0037 28.2 11.1 25 66-90 565-589 (771)
172 KOG4348 Adaptor protein CMS/SE 58.0 37 0.00079 32.5 6.7 25 73-97 594-621 (627)
173 PF10186 Atg14: UV radiation r 57.9 89 0.0019 24.4 11.7 10 78-87 124-133 (302)
174 COG0419 SbcC ATPase involved i 57.9 1.4E+02 0.003 28.6 10.5 37 52-88 692-731 (908)
175 TIGR00634 recN DNA repair prot 57.8 1.5E+02 0.0032 26.9 11.2 16 94-109 382-397 (563)
176 PF04871 Uso1_p115_C: Uso1 / p 57.8 83 0.0018 24.0 10.3 20 85-104 78-97 (136)
177 TIGR01843 type_I_hlyD type I s 57.5 1.1E+02 0.0023 25.1 10.4 11 76-86 249-259 (423)
178 PLN02678 seryl-tRNA synthetase 56.7 1.3E+02 0.0028 27.4 9.7 82 23-109 33-117 (448)
179 COG3879 Uncharacterized protei 56.6 87 0.0019 27.0 8.2 31 38-68 54-84 (247)
180 TIGR02231 conserved hypothetic 56.6 1.3E+02 0.0028 26.7 9.6 36 17-52 72-107 (525)
181 PF08700 Vps51: Vps51/Vps67; 56.2 57 0.0012 21.6 8.3 58 25-93 21-78 (87)
182 PF04728 LPP: Lipoprotein leuc 55.6 34 0.00073 23.6 4.6 42 20-61 7-55 (56)
183 KOG2629 Peroxisomal membrane a 55.5 1.5E+02 0.0033 26.4 9.7 66 21-86 120-188 (300)
184 PRK10869 recombination and rep 55.3 1.3E+02 0.0029 27.5 9.6 64 45-109 321-392 (553)
185 PRK01156 chromosome segregatio 55.3 1.5E+02 0.0033 27.8 10.2 61 22-83 673-736 (895)
186 PF05010 TACC: Transforming ac 55.2 1.2E+02 0.0026 25.1 10.9 82 23-104 83-174 (207)
187 PRK14158 heat shock protein Gr 55.0 1.2E+02 0.0025 24.9 11.1 92 14-108 38-141 (194)
188 PF05010 TACC: Transforming ac 54.9 1.2E+02 0.0026 25.0 9.6 57 28-84 116-172 (207)
189 cd07685 F-BAR_Fes The F-BAR (F 54.7 1.4E+02 0.003 25.7 9.7 57 35-94 96-152 (237)
190 PF10146 zf-C4H2: Zinc finger- 53.7 1.3E+02 0.0028 25.1 11.0 43 70-112 64-114 (230)
191 PF09738 DUF2051: Double stran 53.3 1.5E+02 0.0033 25.7 10.1 48 24-71 78-128 (302)
192 PF02050 FliJ: Flagellar FliJ 53.0 63 0.0014 21.2 10.9 65 21-85 17-89 (123)
193 COG5649 Uncharacterized conser 52.9 18 0.00039 28.8 3.3 40 6-45 3-42 (132)
194 TIGR03007 pepcterm_ChnLen poly 52.9 1.1E+02 0.0024 26.4 8.4 20 18-37 249-268 (498)
195 TIGR01147 V_ATP_synt_G vacuola 52.7 1E+02 0.0022 23.4 8.8 66 37-102 28-101 (113)
196 KOG0963 Transcription factor/C 52.7 1E+02 0.0022 29.9 8.8 50 34-88 296-352 (629)
197 PF02646 RmuC: RmuC family; I 52.6 96 0.0021 26.1 7.8 15 89-103 53-67 (304)
198 KOG2991 Splicing regulator [RN 52.5 44 0.00095 29.9 6.0 41 37-78 236-276 (330)
199 PF02841 GBP_C: Guanylate-bind 52.4 1.3E+02 0.0029 24.8 11.7 58 34-95 208-265 (297)
200 PRK15396 murein lipoprotein; P 52.2 54 0.0012 23.6 5.4 27 69-95 35-61 (78)
201 PRK14154 heat shock protein Gr 52.0 1.4E+02 0.003 24.9 11.0 92 17-108 53-155 (208)
202 PRK10780 periplasmic chaperone 52.0 1E+02 0.0023 23.4 9.2 26 35-60 48-73 (165)
203 PF00170 bZIP_1: bZIP transcri 51.9 64 0.0014 20.9 5.5 15 73-87 47-61 (64)
204 PF06810 Phage_GP20: Phage min 51.7 79 0.0017 24.6 6.7 28 41-68 55-82 (155)
205 PRK00461 rpmC 50S ribosomal pr 51.5 45 0.00098 24.3 5.0 50 31-91 9-58 (87)
206 PF15450 DUF4631: Domain of un 51.4 1.4E+02 0.003 28.6 9.3 40 30-69 387-426 (531)
207 PF04880 NUDE_C: NUDE protein, 51.3 22 0.00048 28.7 3.6 43 46-89 2-47 (166)
208 PF05384 DegS: Sensor protein 51.1 63 0.0014 25.7 6.1 35 57-91 11-45 (159)
209 PRK10132 hypothetical protein; 51.1 83 0.0018 23.5 6.5 23 62-84 41-63 (108)
210 PRK14150 heat shock protein Gr 50.8 82 0.0018 25.4 6.9 22 58-79 62-83 (193)
211 PF05377 FlaC_arch: Flagella a 50.7 79 0.0017 21.7 6.0 20 75-94 16-35 (55)
212 PF02181 FH2: Formin Homology 50.7 1.4E+02 0.0031 24.8 8.4 62 31-92 275-342 (370)
213 PF15294 Leu_zip: Leucine zipp 50.2 1.7E+02 0.0037 25.6 9.0 49 64-114 118-181 (278)
214 PF10234 Cluap1: Clusterin-ass 50.1 1.7E+02 0.0037 25.3 10.2 76 28-104 167-249 (267)
215 KOG4460 Nuclear pore complex, 50.0 96 0.0021 30.5 8.2 35 69-103 665-699 (741)
216 cd07624 BAR_SNX7_30 The Bin/Am 49.9 1.3E+02 0.0027 23.7 9.6 61 34-95 103-163 (200)
217 TIGR03185 DNA_S_dndD DNA sulfu 49.8 2.1E+02 0.0046 26.3 10.9 8 19-26 182-189 (650)
218 KOG0971 Microtubule-associated 49.6 2.3E+02 0.0049 29.6 10.9 60 45-104 266-345 (1243)
219 PF06705 SF-assemblin: SF-asse 49.5 1.4E+02 0.003 24.1 11.8 54 45-98 71-124 (247)
220 smart00338 BRLZ basic region l 49.4 71 0.0015 20.7 6.0 37 49-89 27-63 (65)
221 PF14362 DUF4407: Domain of un 49.4 1.5E+02 0.0032 24.3 10.2 38 54-91 188-229 (301)
222 PRK05431 seryl-tRNA synthetase 49.4 1.9E+02 0.0041 25.6 9.7 83 23-110 28-113 (425)
223 PF09602 PhaP_Bmeg: Polyhydrox 49.3 1.5E+02 0.0032 24.3 10.1 55 35-89 46-101 (165)
224 TIGR03785 marine_sort_HK prote 49.3 73 0.0016 29.5 7.1 55 35-89 430-489 (703)
225 PF06008 Laminin_I: Laminin Do 49.3 1.4E+02 0.0031 24.1 8.4 34 34-67 21-57 (264)
226 PRK14143 heat shock protein Gr 49.0 1.6E+02 0.0035 24.8 10.9 46 17-62 68-113 (238)
227 PF11598 COMP: Cartilage oligo 48.3 57 0.0012 21.5 4.6 29 73-102 8-36 (45)
228 COG0255 RpmC Ribosomal protein 48.2 95 0.0021 21.8 6.0 51 31-92 12-62 (69)
229 KOG0161 Myosin class II heavy 48.0 2.5E+02 0.0054 30.6 11.3 81 23-103 1090-1183(1930)
230 KOG1029 Endocytic adaptor prot 47.7 1E+02 0.0022 31.6 8.1 70 21-91 435-504 (1118)
231 PF04375 HemX: HemX; InterPro 47.7 1.6E+02 0.0035 25.5 8.5 58 21-78 65-135 (372)
232 KOG0977 Nuclear envelope prote 47.7 1.6E+02 0.0036 27.9 9.2 35 22-56 98-132 (546)
233 PF13942 Lipoprotein_20: YfhG 47.4 1.2E+02 0.0026 25.3 7.3 69 32-104 79-157 (179)
234 KOG0612 Rho-associated, coiled 47.4 2.1E+02 0.0045 30.2 10.4 22 50-71 510-531 (1317)
235 smart00503 SynN Syntaxin N-ter 47.4 89 0.0019 21.3 9.5 15 22-36 21-35 (117)
236 TIGR01010 BexC_CtrB_KpsE polys 47.2 1.7E+02 0.0037 24.5 10.3 23 56-78 243-265 (362)
237 COG2770 ResE FOG: HAMP domain 47.1 30 0.00065 23.6 3.3 22 73-94 59-80 (83)
238 PRK06231 F0F1 ATP synthase sub 46.9 1.5E+02 0.0033 23.8 12.0 81 21-101 84-176 (205)
239 TIGR03319 YmdA_YtgF conserved 46.9 2.3E+02 0.0051 26.0 11.3 51 30-80 44-94 (514)
240 smart00338 BRLZ basic region l 46.8 27 0.00059 22.7 3.0 9 60-68 52-60 (65)
241 PF06013 WXG100: Proteins of 1 46.7 69 0.0015 19.8 8.6 58 39-96 9-74 (86)
242 KOG0250 DNA repair protein RAD 46.5 2.6E+02 0.0057 28.9 10.8 20 57-76 392-411 (1074)
243 PRK12704 phosphodiesterase; Pr 46.5 2.4E+02 0.0052 26.0 11.1 53 31-83 51-103 (520)
244 PF15463 ECM11: Extracellular 46.5 1.3E+02 0.0027 22.8 7.2 56 33-88 79-134 (139)
245 KOG2129 Uncharacterized conser 46.4 1.6E+02 0.0035 28.1 8.9 76 18-100 131-206 (552)
246 PF08700 Vps51: Vps51/Vps67; 46.4 85 0.0018 20.8 9.6 44 45-88 23-66 (87)
247 cd00584 Prefoldin_alpha Prefol 46.3 50 0.0011 23.7 4.5 38 18-55 89-126 (129)
248 KOG3647 Predicted coiled-coil 46.2 2.3E+02 0.0049 25.7 10.3 71 28-98 110-203 (338)
249 PF00804 Syntaxin: Syntaxin; 46.1 83 0.0018 20.6 8.3 21 34-54 4-24 (103)
250 PF12777 MT: Microtubule-bindi 46.1 1.9E+02 0.0041 24.6 9.1 65 17-89 215-279 (344)
251 PRK01919 tatB sec-independent 45.9 83 0.0018 25.8 6.2 32 23-57 23-54 (169)
252 PF05478 Prominin: Prominin; 45.9 2.5E+02 0.0053 26.9 10.1 85 17-101 254-363 (806)
253 TIGR01069 mutS2 MutS2 family p 45.8 2.9E+02 0.0062 26.7 11.6 8 34-41 515-522 (771)
254 PF09325 Vps5: Vps5 C terminal 45.8 1.3E+02 0.0029 22.9 8.0 49 37-89 163-212 (236)
255 PRK01156 chromosome segregatio 45.6 2.7E+02 0.0058 26.2 10.2 9 35-43 599-607 (895)
256 PF14723 SSFA2_C: Sperm-specif 45.5 1.3E+02 0.0027 25.2 7.3 51 45-103 106-171 (179)
257 TIGR00634 recN DNA repair prot 45.4 1.7E+02 0.0036 26.5 8.6 32 22-53 265-296 (563)
258 PF05957 DUF883: Bacterial pro 45.4 1E+02 0.0022 21.3 8.5 37 61-97 26-62 (94)
259 PRK05771 V-type ATP synthase s 45.3 2.5E+02 0.0054 25.8 9.9 50 21-70 213-262 (646)
260 PRK14163 heat shock protein Gr 45.3 1.8E+02 0.004 24.3 10.8 82 18-108 42-135 (214)
261 PF02344 Myc-LZ: Myc leucine z 45.1 44 0.00095 21.1 3.5 23 70-92 5-27 (32)
262 PRK14011 prefoldin subunit alp 45.0 1.1E+02 0.0024 23.9 6.5 39 18-56 90-128 (144)
263 PF00170 bZIP_1: bZIP transcri 44.7 86 0.0019 20.3 6.3 23 68-90 35-57 (64)
264 PF01031 Dynamin_M: Dynamin ce 44.7 55 0.0012 26.6 5.0 43 65-107 60-103 (295)
265 PRK00409 recombination and DNA 44.5 3E+02 0.0065 26.5 11.8 14 21-34 518-531 (782)
266 PF06705 SF-assemblin: SF-asse 44.4 1.7E+02 0.0036 23.6 11.1 72 32-103 29-104 (247)
267 PF07464 ApoLp-III: Apolipopho 44.4 34 0.00073 27.1 3.7 34 44-77 23-56 (155)
268 cd07595 BAR_RhoGAP_Rich-like T 44.3 1.5E+02 0.0033 24.6 7.6 25 76-100 161-185 (244)
269 PF10212 TTKRSYEDQ: Predicted 44.3 2.9E+02 0.0063 26.3 10.7 34 73-106 469-502 (518)
270 PRK03100 sec-independent trans 44.2 63 0.0014 25.4 5.1 18 70-87 54-71 (136)
271 PF07334 IFP_35_N: Interferon- 44.2 39 0.00085 24.5 3.7 24 25-48 2-25 (76)
272 PF06005 DUF904: Protein of un 44.1 1.1E+02 0.0024 21.4 9.8 44 60-103 23-69 (72)
273 PF13166 AAA_13: AAA domain 43.8 2.5E+02 0.0054 25.4 10.1 68 30-97 280-353 (712)
274 PF03961 DUF342: Protein of un 43.4 2.3E+02 0.0049 24.9 9.7 30 66-95 375-404 (451)
275 PLN02939 transferase, transfer 43.3 1.1E+02 0.0024 30.9 7.7 40 34-73 354-394 (977)
276 PRK10997 yieM hypothetical pro 43.2 98 0.0021 28.7 6.9 49 46-101 133-181 (487)
277 PF05929 Phage_GPO: Phage caps 43.0 75 0.0016 27.5 5.8 69 33-102 173-246 (276)
278 KOG2391 Vacuolar sorting prote 42.9 1.5E+02 0.0033 27.1 7.9 55 45-100 215-269 (365)
279 PRK03100 sec-independent trans 42.9 1.5E+02 0.0033 23.3 7.0 33 57-92 37-69 (136)
280 PRK10929 putative mechanosensi 42.9 2.6E+02 0.0056 28.7 10.2 76 17-93 334-431 (1109)
281 KOG1666 V-SNARE [Intracellular 42.8 44 0.00096 28.5 4.3 50 8-57 28-92 (220)
282 PF15035 Rootletin: Ciliary ro 42.8 1.8E+02 0.0038 23.4 10.9 62 39-100 104-175 (182)
283 PF05276 SH3BP5: SH3 domain-bi 42.7 59 0.0013 27.4 5.1 40 66-105 177-216 (239)
284 PF15233 SYCE1: Synaptonemal c 42.7 1.8E+02 0.0038 23.4 7.8 37 59-95 24-63 (134)
285 COG0172 SerS Seryl-tRNA synthe 42.5 2.5E+02 0.0054 25.8 9.3 90 17-110 23-115 (429)
286 KOG0239 Kinesin (KAR3 subfamil 42.3 1.6E+02 0.0034 28.3 8.3 27 53-79 267-293 (670)
287 PF05483 SCP-1: Synaptonemal c 42.3 3.6E+02 0.0078 27.1 10.8 77 21-97 427-523 (786)
288 PF00804 Syntaxin: Syntaxin; 41.8 99 0.0021 20.2 9.1 19 61-79 44-62 (103)
289 PF10455 BAR_2: Bin/amphiphysi 41.4 1.1E+02 0.0023 26.7 6.5 55 30-84 185-240 (289)
290 PF03938 OmpH: Outer membrane 41.4 1.4E+02 0.003 21.8 10.0 20 73-92 83-102 (158)
291 PF04513 Baculo_PEP_C: Baculov 41.4 1.8E+02 0.0039 23.1 10.5 60 26-85 34-97 (140)
292 TIGR00293 prefoldin, archaeal 41.2 74 0.0016 22.8 4.8 31 22-52 92-122 (126)
293 PF05667 DUF812: Protein of un 41.2 2.8E+02 0.0061 26.2 9.6 82 20-102 423-513 (594)
294 PF09738 DUF2051: Double stran 41.1 55 0.0012 28.4 4.7 41 17-57 213-253 (302)
295 PF15294 Leu_zip: Leucine zipp 40.8 2.5E+02 0.0054 24.6 10.3 83 21-103 130-220 (278)
296 KOG0933 Structural maintenance 40.8 3.9E+02 0.0086 28.0 11.0 72 20-91 255-347 (1174)
297 COG2433 Uncharacterized conser 40.7 2.8E+02 0.0061 27.2 9.7 65 23-88 443-510 (652)
298 KOG0995 Centromere-associated 40.7 3.5E+02 0.0076 26.2 11.3 79 23-101 294-381 (581)
299 PRK14144 heat shock protein Gr 40.6 1.4E+02 0.003 24.7 6.8 91 15-108 44-146 (199)
300 KOG0994 Extracellular matrix g 40.5 2E+02 0.0043 30.9 9.1 80 16-99 1164-1251(1758)
301 PF14643 DUF4455: Domain of un 40.5 2.7E+02 0.0059 24.9 10.5 75 30-104 275-354 (473)
302 cd07627 BAR_Vps5p The Bin/Amph 40.4 1.8E+02 0.004 23.0 10.1 67 21-91 120-194 (216)
303 PF01576 Myosin_tail_1: Myosin 40.4 9.3 0.0002 36.7 0.0 87 17-103 244-340 (859)
304 PF09304 Cortex-I_coil: Cortex 40.3 1.7E+02 0.0037 22.5 7.3 11 25-35 25-35 (107)
305 PF10372 YojJ: Bacterial membr 40.3 59 0.0013 23.1 4.0 41 50-90 12-52 (70)
306 PF00831 Ribosomal_L29: Riboso 40.3 1.1E+02 0.0023 20.1 6.5 24 31-54 8-31 (58)
307 PF04508 Pox_A_type_inc: Viral 40.1 38 0.00082 19.8 2.5 16 74-89 2-17 (23)
308 PF07730 HisKA_3: Histidine ki 39.9 93 0.002 19.4 7.0 55 33-87 11-65 (68)
309 CHL00118 atpG ATP synthase CF0 39.9 1.6E+02 0.0035 22.2 12.0 45 21-65 58-102 (156)
310 PF15070 GOLGA2L5: Putative go 39.8 3.4E+02 0.0074 25.8 10.6 33 34-67 84-116 (617)
311 PF14817 HAUS5: HAUS augmin-li 39.8 55 0.0012 31.2 4.9 23 68-90 81-103 (632)
312 PRK14156 heat shock protein Gr 39.7 1.2E+02 0.0026 24.5 6.2 86 19-109 30-127 (177)
313 PRK09470 cpxA two-component se 39.6 65 0.0014 26.1 4.7 29 59-87 217-245 (461)
314 PRK13169 DNA replication intia 39.5 1.7E+02 0.0036 22.2 7.4 41 51-91 11-54 (110)
315 PF14159 CAAD: CAAD domains of 39.4 31 0.00068 24.8 2.6 18 29-46 71-88 (90)
316 PRK00409 recombination and DNA 39.4 3.6E+02 0.0078 26.0 11.8 11 34-44 520-530 (782)
317 PRK04778 septation ring format 39.3 3E+02 0.0065 25.1 11.3 21 71-91 402-422 (569)
318 PF06160 EzrA: Septation ring 39.3 2.3E+02 0.0049 26.0 8.5 53 52-104 112-167 (560)
319 TIGR02231 conserved hypothetic 39.2 2.8E+02 0.006 24.7 10.1 38 20-57 68-108 (525)
320 PRK06664 fliD flagellar hook-a 39.2 1.3E+02 0.0028 28.7 7.2 44 47-90 599-642 (661)
321 COG3937 Uncharacterized conser 39.1 1.6E+02 0.0035 22.8 6.5 22 69-90 86-107 (108)
322 PF11262 Tho2: Transcription f 39.1 1.2E+02 0.0027 25.5 6.5 46 58-103 27-83 (298)
323 PRK13182 racA polar chromosome 38.8 2E+02 0.0044 23.0 7.9 68 16-104 78-145 (175)
324 KOG3809 Microtubule-binding pr 38.8 1.1E+02 0.0024 29.3 6.6 83 16-102 479-568 (583)
325 KOG0996 Structural maintenance 38.5 2.9E+02 0.0063 29.2 9.8 22 32-53 537-558 (1293)
326 TIGR03319 YmdA_YtgF conserved 38.4 3.2E+02 0.0069 25.1 10.9 31 27-57 59-89 (514)
327 PF10174 Cast: RIM-binding pro 38.3 2.2E+02 0.0047 28.0 8.7 43 36-82 41-83 (775)
328 PF14931 IFT20: Intraflagellar 38.0 1.8E+02 0.0039 22.1 10.4 68 28-95 46-116 (120)
329 PRK14139 heat shock protein Gr 37.9 2.2E+02 0.0048 23.1 10.6 89 16-108 32-132 (185)
330 PRK00290 dnaK molecular chaper 37.9 2.7E+02 0.0058 25.4 8.8 36 56-91 554-590 (627)
331 PF00509 Hemagglutinin: Haemag 37.7 98 0.0021 29.6 6.1 63 17-90 390-455 (550)
332 PF05557 MAD: Mitotic checkpoi 37.6 11 0.00024 34.9 0.0 18 74-91 186-203 (722)
333 PRK04654 sec-independent trans 37.6 2.6E+02 0.0056 23.8 8.4 7 66-72 58-64 (214)
334 KOG0804 Cytoplasmic Zn-finger 37.5 2E+02 0.0044 27.3 8.1 43 22-64 381-430 (493)
335 TIGR01541 tape_meas_lam_C phag 37.5 2.8E+02 0.0061 24.2 10.1 27 59-85 116-142 (332)
336 PRK14157 heat shock protein Gr 37.2 1.2E+02 0.0027 25.6 6.1 36 23-58 84-119 (227)
337 PRK14159 heat shock protein Gr 37.0 1.4E+02 0.0029 24.1 6.1 86 21-108 28-125 (176)
338 PF14182 YgaB: YgaB-like prote 36.9 96 0.0021 22.8 4.8 33 70-102 44-76 (79)
339 PF04420 CHD5: CHD5-like prote 36.9 1.6E+02 0.0036 22.7 6.4 32 71-102 71-102 (161)
340 PRK14139 heat shock protein Gr 36.8 1.5E+02 0.0032 24.1 6.4 41 36-80 38-78 (185)
341 PRK07737 fliD flagellar cappin 36.8 1.7E+02 0.0036 26.6 7.3 49 52-100 445-496 (501)
342 PF07851 TMPIT: TMPIT-like pro 36.8 3.1E+02 0.0067 24.5 10.4 71 20-90 8-85 (330)
343 PF12732 YtxH: YtxH-like prote 36.7 1.3E+02 0.0028 20.1 7.2 23 30-52 26-48 (74)
344 CHL00019 atpF ATP synthase CF0 36.6 2E+02 0.0043 22.2 12.0 51 22-72 61-111 (184)
345 TIGR02894 DNA_bind_RsfA transc 36.3 2.4E+02 0.0052 23.0 8.0 25 71-95 116-140 (161)
346 KOG0964 Structural maintenance 36.3 3.7E+02 0.008 28.2 10.1 80 19-98 414-499 (1200)
347 PRK14147 heat shock protein Gr 36.1 1.5E+02 0.0032 23.6 6.1 41 35-79 23-63 (172)
348 PRK09173 F0F1 ATP synthase sub 36.1 1.8E+02 0.004 21.7 11.9 57 21-77 38-94 (159)
349 PRK04863 mukB cell division pr 36.0 5.5E+02 0.012 27.1 12.0 20 25-44 357-376 (1486)
350 cd07590 BAR_Bin3 The Bin/Amphi 36.0 2.2E+02 0.0048 23.6 7.3 78 24-103 40-134 (225)
351 PRK14141 heat shock protein Gr 35.3 2.6E+02 0.0057 23.2 10.7 44 19-62 34-77 (209)
352 PRK14471 F0F1 ATP synthase sub 35.2 1.9E+02 0.0042 21.7 12.0 81 21-101 44-136 (164)
353 PLN02320 seryl-tRNA synthetase 35.0 3.4E+02 0.0073 25.4 9.1 80 24-109 94-176 (502)
354 PRK14127 cell division protein 34.9 1.9E+02 0.0042 21.9 6.3 47 49-95 20-66 (109)
355 cd00176 SPEC Spectrin repeats, 34.5 1.6E+02 0.0036 20.7 8.3 60 36-95 145-208 (213)
356 PRK08032 fliD flagellar cappin 34.5 2.2E+02 0.0049 25.4 7.6 39 51-89 409-447 (462)
357 COG0576 GrpE Molecular chapero 34.5 2E+02 0.0044 23.1 6.7 39 37-79 43-81 (193)
358 KOG0979 Structural maintenance 34.4 5.2E+02 0.011 26.9 10.7 91 14-104 616-719 (1072)
359 TIGR03321 alt_F1F0_F0_B altern 34.4 2.5E+02 0.0054 22.7 12.0 82 21-102 41-134 (246)
360 PRK14151 heat shock protein Gr 34.3 2.4E+02 0.0053 22.5 10.4 91 17-108 21-123 (176)
361 PF14282 FlxA: FlxA-like prote 34.2 1.3E+02 0.0028 21.9 5.2 47 54-106 25-73 (106)
362 PRK05759 F0F1 ATP synthase sub 34.1 1.9E+02 0.0041 21.2 12.0 79 21-99 40-130 (156)
363 PRK14140 heat shock protein Gr 34.0 1.4E+02 0.0031 24.4 5.8 90 16-107 37-138 (191)
364 COG3074 Uncharacterized protei 33.9 74 0.0016 23.5 3.8 21 64-84 44-64 (79)
365 PRK13411 molecular chaperone D 33.9 3.1E+02 0.0067 25.5 8.6 16 58-73 558-573 (653)
366 PF13514 AAA_27: AAA domain 33.8 4.7E+02 0.01 25.8 11.0 37 24-60 737-773 (1111)
367 PF13514 AAA_27: AAA domain 33.8 4.7E+02 0.01 25.7 11.3 82 22-104 241-327 (1111)
368 PRK14154 heat shock protein Gr 33.8 1.8E+02 0.0038 24.3 6.4 41 35-79 57-97 (208)
369 PF02994 Transposase_22: L1 tr 33.8 71 0.0015 27.9 4.3 17 35-51 103-119 (370)
370 COG3879 Uncharacterized protei 33.7 1.9E+02 0.0042 24.9 6.8 16 71-86 69-84 (247)
371 KOG4196 bZIP transcription fac 33.7 1.7E+02 0.0037 23.5 6.1 88 8-99 17-117 (135)
372 COG1382 GimC Prefoldin, chaper 33.6 2.3E+02 0.0049 22.0 6.7 31 19-49 9-39 (119)
373 PRK14156 heat shock protein Gr 33.5 1.5E+02 0.0034 23.9 5.9 44 33-80 30-73 (177)
374 KOG4196 bZIP transcription fac 33.5 94 0.002 24.9 4.6 44 43-90 76-119 (135)
375 cd07623 BAR_SNX1_2 The Bin/Amp 33.3 2.5E+02 0.0055 22.4 10.3 21 58-78 166-186 (224)
376 TIGR01386 cztS_silS_copS heavy 33.2 83 0.0018 25.3 4.3 34 58-91 214-247 (457)
377 PF07889 DUF1664: Protein of u 33.1 2.3E+02 0.005 21.9 8.4 22 23-44 54-75 (126)
378 PF02183 HALZ: Homeobox associ 33.1 1.4E+02 0.0029 19.3 4.8 22 69-90 22-43 (45)
379 PF09537 DUF2383: Domain of un 33.1 1.7E+02 0.0036 20.3 5.4 31 76-106 30-60 (111)
380 PF11690 DUF3287: Protein of u 33.0 1.4E+02 0.003 22.9 5.3 32 42-73 36-67 (109)
381 PRK14153 heat shock protein Gr 33.0 1.5E+02 0.0032 24.4 5.8 42 51-96 36-77 (194)
382 PF04799 Fzo_mitofusin: fzo-li 33.0 1.7E+02 0.0037 23.9 6.1 39 41-79 102-140 (171)
383 PF13815 Dzip-like_N: Iguana/D 32.9 2E+02 0.0042 21.0 6.0 25 25-49 68-92 (118)
384 KOG4643 Uncharacterized coiled 32.7 4.6E+02 0.01 27.5 10.1 83 24-107 489-577 (1195)
385 PF00435 Spectrin: Spectrin re 32.5 1.3E+02 0.0028 18.8 9.7 61 34-95 38-102 (105)
386 PF14335 DUF4391: Domain of un 32.3 1.2E+02 0.0027 24.1 5.2 20 34-53 179-198 (221)
387 PRK14155 heat shock protein Gr 32.2 2.9E+02 0.0063 22.8 11.6 93 16-108 13-118 (208)
388 PRK00488 pheS phenylalanyl-tRN 32.2 2.6E+02 0.0056 24.9 7.5 27 27-53 4-32 (339)
389 PRK14151 heat shock protein Gr 32.2 2E+02 0.0043 23.1 6.3 43 33-79 23-65 (176)
390 PF05064 Nsp1_C: Nsp1-like C-t 32.2 1.6E+02 0.0036 21.6 5.5 60 46-105 24-99 (116)
391 PF15463 ECM11: Extracellular 32.1 2.2E+02 0.0048 21.4 9.7 61 44-104 69-132 (139)
392 PF13801 Metal_resist: Heavy-m 32.0 1.5E+02 0.0033 19.5 5.3 23 74-96 88-110 (125)
393 PRK09343 prefoldin subunit bet 32.0 2.1E+02 0.0046 21.2 6.8 18 65-82 70-87 (121)
394 PF05531 NPV_P10: Nucleopolyhe 31.9 1.5E+02 0.0032 21.4 5.0 31 18-48 6-36 (75)
395 COG1345 FliD Flagellar capping 31.8 2E+02 0.0044 26.5 7.1 27 39-65 431-457 (483)
396 PF13600 DUF4140: N-terminal d 31.6 84 0.0018 21.8 3.7 34 16-49 70-103 (104)
397 TIGR00237 xseA exodeoxyribonuc 31.6 3.7E+02 0.008 23.8 10.0 20 55-74 300-319 (432)
398 KOG0946 ER-Golgi vesicle-tethe 31.6 5E+02 0.011 26.7 10.0 54 46-103 662-718 (970)
399 PF12325 TMF_TATA_bd: TATA ele 31.6 2.3E+02 0.005 21.5 8.1 26 36-61 39-64 (120)
400 PRK14141 heat shock protein Gr 31.6 1.2E+02 0.0026 25.1 5.2 59 17-79 18-76 (209)
401 PF10224 DUF2205: Predicted co 31.5 1.5E+02 0.0033 21.3 5.1 48 29-91 15-62 (80)
402 COG1561 Uncharacterized stress 31.5 3.7E+02 0.008 23.8 9.9 70 20-89 136-235 (290)
403 KOG0243 Kinesin-like protein [ 31.5 6.1E+02 0.013 26.3 11.8 58 34-91 452-515 (1041)
404 PF10805 DUF2730: Protein of u 31.4 2.1E+02 0.0045 20.8 7.0 26 61-90 64-89 (106)
405 KOG4674 Uncharacterized conser 31.4 4.2E+02 0.009 29.0 9.9 30 50-79 800-829 (1822)
406 KOG4673 Transcription factor T 31.2 5.3E+02 0.012 26.3 10.1 77 21-98 871-957 (961)
407 PRK10325 heat shock protein Gr 31.2 2.3E+02 0.0049 23.0 6.6 21 59-79 64-84 (197)
408 PRK14163 heat shock protein Gr 31.2 3.2E+02 0.0069 22.9 7.6 43 33-79 43-85 (214)
409 PF13270 DUF4061: Domain of un 31.2 1.6E+02 0.0034 21.6 5.1 59 33-91 32-90 (90)
410 PRK13455 F0F1 ATP synthase sub 31.1 2.5E+02 0.0053 21.6 12.0 58 21-78 63-124 (184)
411 cd00890 Prefoldin Prefoldin is 31.1 1.9E+02 0.004 20.2 5.5 21 70-90 105-125 (129)
412 COG3883 Uncharacterized protei 31.0 3.6E+02 0.0077 23.5 11.0 76 18-97 33-111 (265)
413 PRK14472 F0F1 ATP synthase sub 30.9 2.4E+02 0.0053 21.5 12.0 77 21-97 54-142 (175)
414 PRK11281 hypothetical protein; 30.9 5.1E+02 0.011 26.6 10.1 41 53-93 405-455 (1113)
415 PF13315 DUF4085: Protein of u 30.8 1.5E+02 0.0032 24.9 5.6 40 40-79 79-122 (208)
416 PRK14148 heat shock protein Gr 30.8 3E+02 0.0065 22.6 9.5 89 18-108 42-142 (195)
417 PRK06798 fliD flagellar cappin 30.7 2.6E+02 0.0056 25.1 7.4 40 52-91 383-422 (440)
418 CHL00154 rpl29 ribosomal prote 30.7 1.8E+02 0.004 20.0 6.0 50 31-91 13-62 (67)
419 TIGR00237 xseA exodeoxyribonuc 30.6 3.9E+02 0.0084 23.7 9.4 12 92-103 375-386 (432)
420 KOG0977 Nuclear envelope prote 30.6 4.7E+02 0.01 25.0 9.3 75 19-93 116-196 (546)
421 KOG0837 Transcriptional activa 30.6 2.2E+02 0.0047 25.3 6.7 46 29-89 219-264 (279)
422 KOG1760 Molecular chaperone Pr 30.6 2.8E+02 0.0061 22.2 10.0 69 33-101 26-123 (131)
423 PRK10246 exonuclease subunit S 30.5 5.4E+02 0.012 25.4 12.4 31 75-105 733-763 (1047)
424 KOG1853 LIS1-interacting prote 30.4 4.1E+02 0.0089 24.0 9.6 37 26-62 55-92 (333)
425 PF10874 DUF2746: Protein of u 30.3 1.5E+02 0.0032 20.5 4.6 33 42-74 13-45 (57)
426 PRK10361 DNA recombination pro 30.3 3.7E+02 0.0081 25.1 8.5 55 25-79 368-425 (475)
427 PRK14157 heat shock protein Gr 30.2 1.9E+02 0.0042 24.5 6.2 46 30-79 77-122 (227)
428 PHA03332 membrane glycoprotein 30.1 4.7E+02 0.01 27.8 9.7 66 23-88 891-963 (1328)
429 PF00430 ATP-synt_B: ATP synth 30.0 1.9E+02 0.0042 20.1 11.1 52 20-71 34-85 (132)
430 PF02388 FemAB: FemAB family; 29.9 3.4E+02 0.0074 23.6 7.8 40 21-61 240-279 (406)
431 PF07111 HCR: Alpha helical co 29.8 5.8E+02 0.013 25.5 10.3 71 21-95 167-257 (739)
432 PF12548 DUF3740: Sulfatase pr 29.8 65 0.0014 25.3 3.2 28 41-68 96-126 (145)
433 PF06825 HSBP1: Heat shock fac 29.8 1.8E+02 0.0039 19.7 5.5 37 68-104 5-41 (54)
434 PF05557 MAD: Mitotic checkpoi 29.7 18 0.00038 33.6 0.0 25 45-69 136-160 (722)
435 PF09769 ApoO: Apolipoprotein 29.7 2.5E+02 0.0054 21.2 6.3 50 29-85 37-86 (158)
436 TIGR02971 heterocyst_DevB ABC 29.7 3E+02 0.0066 22.2 9.3 13 38-50 112-124 (327)
437 PRK13454 F0F1 ATP synthase sub 29.6 2.7E+02 0.0059 21.7 11.8 38 26-63 72-109 (181)
438 PF10473 CENP-F_leu_zip: Leuci 29.6 2.8E+02 0.006 21.8 8.5 17 52-68 84-100 (140)
439 KOG1666 V-SNARE [Intracellular 29.5 98 0.0021 26.5 4.4 51 25-75 38-92 (220)
440 PF08397 IMD: IRSp53/MIM homol 29.5 2.9E+02 0.0062 21.9 8.3 51 21-71 63-118 (219)
441 PF07061 Swi5: Swi5; InterPro 29.3 1.3E+02 0.0028 21.6 4.3 57 34-95 4-61 (83)
442 COG2770 ResE FOG: HAMP domain 29.1 76 0.0016 21.6 3.1 46 37-85 35-82 (83)
443 KOG0996 Structural maintenance 28.7 4.8E+02 0.01 27.7 9.6 66 16-82 935-1000(1293)
444 PRK07342 peptide chain release 28.7 3.5E+02 0.0076 24.1 7.8 53 34-91 17-74 (339)
445 KOG2264 Exostosin EXT1L [Signa 28.7 3.5E+02 0.0075 27.2 8.3 70 14-83 61-138 (907)
446 PRK05561 DNA topoisomerase IV 28.6 1.4E+02 0.003 28.8 5.6 43 48-90 437-482 (742)
447 KOG0972 Huntingtin interacting 28.4 2.4E+02 0.0053 25.9 6.8 50 41-90 217-290 (384)
448 PRK14145 heat shock protein Gr 28.3 3.4E+02 0.0074 22.4 9.9 86 18-108 47-144 (196)
449 cd09236 V_AnPalA_UmRIM20_like 28.2 3.8E+02 0.0083 22.9 8.3 54 17-71 262-315 (353)
450 PRK14549 50S ribosomal protein 28.2 2E+02 0.0044 19.7 5.7 41 52-92 16-64 (69)
451 PF11464 Rbsn: Rabenosyn Rab b 28.1 84 0.0018 20.5 3.0 21 73-93 22-42 (42)
452 PF08376 NIT: Nitrate and nitr 27.9 2.6E+02 0.0057 20.9 8.9 51 22-72 2-56 (247)
453 PHA01750 hypothetical protein 27.9 1.9E+02 0.0041 21.2 5.0 30 68-97 37-69 (75)
454 cd00427 Ribosomal_L29_HIP Ribo 27.8 1.8E+02 0.0039 19.0 6.0 22 31-52 7-28 (57)
455 PRK14146 heat shock protein Gr 27.8 2.4E+02 0.0051 23.4 6.2 35 22-56 60-94 (215)
456 COG1579 Zn-ribbon protein, pos 27.7 3.8E+02 0.0083 22.8 9.5 33 22-54 44-76 (239)
457 PRK07353 F0F1 ATP synthase sub 27.7 2.4E+02 0.0051 20.4 12.0 48 21-68 41-88 (140)
458 PF14523 Syntaxin_2: Syntaxin- 27.6 2E+02 0.0043 19.5 9.9 25 73-97 71-95 (102)
459 PRK07352 F0F1 ATP synthase sub 27.6 2.8E+02 0.006 21.1 12.0 80 21-100 55-146 (174)
460 COG4026 Uncharacterized protei 27.5 3.6E+02 0.0078 24.0 7.5 42 41-83 132-173 (290)
461 PF08312 cwf21: cwf21 domain; 27.4 1.8E+02 0.0039 18.9 5.9 42 47-92 3-44 (46)
462 PF06721 DUF1204: Protein of u 27.0 4.1E+02 0.0089 22.9 8.9 51 26-76 46-105 (228)
463 cd00179 SynN Syntaxin N-termin 27.0 2.4E+02 0.0052 20.2 10.2 49 21-69 18-69 (151)
464 PF02601 Exonuc_VII_L: Exonucl 26.9 3.6E+02 0.0077 22.2 8.6 16 57-72 193-208 (319)
465 KOG4807 F-actin binding protei 26.8 5.7E+02 0.012 24.6 9.1 77 22-98 351-435 (593)
466 PF07795 DUF1635: Protein of u 26.7 4E+02 0.0086 22.6 8.2 56 31-86 2-60 (214)
467 PF10224 DUF2205: Predicted co 26.6 1.1E+02 0.0024 22.0 3.7 44 20-67 20-63 (80)
468 PRK14146 heat shock protein Gr 26.5 2.8E+02 0.0061 23.0 6.5 39 37-79 61-99 (215)
469 PHA00728 hypothetical protein 26.4 75 0.0016 25.7 3.0 20 72-91 4-23 (151)
470 PRK13453 F0F1 ATP synthase sub 26.4 3E+02 0.0065 21.1 12.0 51 21-71 54-104 (173)
471 PF07160 DUF1395: Protein of u 26.3 3.8E+02 0.0083 22.3 9.6 57 47-104 21-77 (243)
472 PRK15374 pathogenicity island 26.2 5.3E+02 0.012 25.2 8.9 70 33-103 86-167 (593)
473 KOG2479 Translation initiation 26.2 28 0.00061 33.0 0.7 10 48-57 409-418 (549)
474 cd07665 BAR_SNX1 The Bin/Amphi 26.2 3.9E+02 0.0084 22.3 8.5 56 37-96 159-215 (234)
475 PRK09973 putative outer membra 26.1 2.7E+02 0.0058 20.5 5.6 29 69-97 34-62 (85)
476 PRK00182 tatB sec-independent 26.1 3.6E+02 0.0078 21.9 7.0 44 38-91 25-68 (160)
477 PF14916 CCDC92: Coiled-coil d 26.1 1.4E+02 0.0031 20.7 4.0 30 57-86 12-41 (60)
478 PF10372 YojJ: Bacterial membr 26.0 2.3E+02 0.0051 20.1 5.1 28 61-88 30-57 (70)
479 PF01496 V_ATPase_I: V-type AT 25.8 3.9E+02 0.0085 25.1 7.9 25 24-48 230-254 (759)
480 PRK10755 sensor protein BasS/P 25.8 1.6E+02 0.0035 23.3 4.8 69 35-103 85-155 (356)
481 PF05615 THOC7: Tho complex su 25.7 2.7E+02 0.0059 20.4 10.5 31 56-90 75-105 (139)
482 PRK10265 chaperone-modulator p 25.7 90 0.002 22.4 3.1 18 34-51 75-92 (101)
483 PF08946 Osmo_CC: Osmosensory 25.7 81 0.0018 21.3 2.6 21 18-38 21-41 (46)
484 PF06216 RTBV_P46: Rice tungro 25.6 4.4E+02 0.0096 24.0 7.9 53 37-90 54-109 (389)
485 PRK10404 hypothetical protein; 25.5 2.8E+02 0.006 20.4 6.4 28 61-88 33-60 (101)
486 COG4238 Murein lipoprotein [Ce 25.3 2.3E+02 0.005 20.9 5.1 35 62-96 28-62 (78)
487 PRK10807 paraquat-inducible pr 25.2 5.5E+02 0.012 23.8 9.2 83 21-103 411-519 (547)
488 PF06428 Sec2p: GDP/GTP exchan 25.2 2.9E+02 0.0062 20.5 6.4 57 50-106 10-73 (100)
489 PF09177 Syntaxin-6_N: Syntaxi 25.2 2.4E+02 0.0053 19.7 7.0 57 43-101 7-63 (97)
490 PF00956 NAP: Nucleosome assem 25.2 3.2E+02 0.0069 22.0 6.4 40 57-96 7-46 (244)
491 PF04375 HemX: HemX; InterPro 25.1 4.5E+02 0.0098 22.8 10.0 65 24-91 54-118 (372)
492 PF12732 YtxH: YtxH-like prote 25.1 2.2E+02 0.0047 19.0 5.8 38 29-66 25-66 (74)
493 PF10234 Cluap1: Clusterin-ass 25.1 3.7E+02 0.0079 23.3 7.1 60 18-85 178-237 (267)
494 PRK13922 rod shape-determining 25.0 3.7E+02 0.008 21.7 10.8 75 25-101 36-110 (276)
495 PF05103 DivIVA: DivIVA protei 24.9 90 0.002 22.0 2.9 47 21-71 23-69 (131)
496 PRK10337 sensor protein QseC; 24.8 1.3E+02 0.0027 24.6 4.1 69 35-103 185-255 (449)
497 PRK14140 heat shock protein Gr 24.7 3.9E+02 0.0084 21.8 9.5 70 33-106 40-137 (191)
498 PF08614 ATG16: Autophagy prot 24.7 3.4E+02 0.0074 21.2 8.6 55 22-91 115-169 (194)
499 cd08915 V_Alix_like Protein-in 24.5 4.2E+02 0.0091 22.2 7.2 55 18-72 252-319 (342)
500 PRK14474 F0F1 ATP synthase sub 24.5 4.1E+02 0.0088 22.0 12.0 82 21-102 41-123 (250)
No 1
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=96.04 E-value=0.1 Score=35.90 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=52.4
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLD-----TQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLD-----tQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
+.+.-++.+|.+|..||.+|+.+|..+...|+.-..-.+ ..++ |..-|..+|+. |..+..-++.|+.++
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkr----m~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKR----MSNLHERLQKLKKRA 87 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 456678999999999999999999999999998888333 2455 99999988874 444555555554443
No 2
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=95.72 E-value=0.095 Score=41.08 Aligned_cols=71 Identities=15% Similarity=0.418 Sum_probs=49.1
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHh
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL---SVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L---nsEVeqLRsEfqeLRttLqqQ 92 (144)
-+.|..|...=.+-=..++.+-.+|.+||.+|..-+..+..-...+...| +.++++|+.++..++..|++.
T Consensus 109 ~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~~ 182 (184)
T PF05791_consen 109 KEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKKD 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-GG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhh
Confidence 34556666666666667777788888888888888877777666666665 456788888888887777653
No 3
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=94.80 E-value=0.73 Score=35.69 Aligned_cols=59 Identities=29% Similarity=0.478 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 43 KQDLQNWRSKLDTQVKIYRDELTDMKKT----LSVEVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 43 K~DLq~WRskLDtQVKtYr~EL~dLK~~----LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
|.|+.+=+..+...+-..|.|+..++++ |.++.++|+.||..|+..|++++..+.+.++
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~k 108 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVK 108 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444444444555555444432 5566777777777777777777776666443
No 4
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=94.63 E-value=1.2 Score=34.41 Aligned_cols=56 Identities=25% Similarity=0.436 Sum_probs=42.6
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032236 27 ELNESRAELLNRIQGLKQDLQNWR----SKLDTQVKIYRDELTDMKKTLSVEVEQLRSEF 82 (144)
Q Consensus 27 ELneSr~ELL~Rvq~LK~DLq~WR----skLDtQVKtYr~EL~dLK~~LnsEVeqLRsEf 82 (144)
++....-.+-..+..||.|++.=| ..|.++...-+.|+..|+..|+.|+..|+.++
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~ 107 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEV 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555577888999998766 45777888888899999999999999888743
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.33 E-value=0.49 Score=49.57 Aligned_cols=83 Identities=23% Similarity=0.474 Sum_probs=71.7
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH----------HHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR----------SEFQELRS 87 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR----------sEfqeLRt 87 (144)
...+..++.|=.+.+.+|+..+.....+++.||.++++.+.....|+.++|+-|...++.+. ..+...|.
T Consensus 1331 ~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~ 1410 (1930)
T KOG0161|consen 1331 LDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKN 1410 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999998887766 44566778
Q ss_pred HHHHhHHHHhhhh
Q 032236 88 TLQQQQDDVTASL 100 (144)
Q Consensus 88 tLqqQ~e~~ta~L 100 (144)
.|++..++++.-+
T Consensus 1411 ~l~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1411 RLQQELEDLQLDL 1423 (1930)
T ss_pred HHHhHHHHHHHHH
Confidence 8888887766555
No 6
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.55 E-value=2.3 Score=32.29 Aligned_cols=75 Identities=28% Similarity=0.486 Sum_probs=50.0
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV----------EVEQLRSEFQELRSTL 89 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Lns----------EVeqLRsEfqeLRttL 89 (144)
.+...|+.|...|.+|-.-|-.|-.....++. ...++..-+.++.+|....++ +|+.||.++++||.-.
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 34445555555565555555555555554433 345566667777777766654 8999999999999999
Q ss_pred HHhHHH
Q 032236 90 QQQQDD 95 (144)
Q Consensus 90 qqQ~e~ 95 (144)
+.|.+.
T Consensus 113 r~Qi~~ 118 (120)
T PF12325_consen 113 REQIDQ 118 (120)
T ss_pred HHHHHH
Confidence 999875
No 7
>PRK11637 AmiB activator; Provisional
Probab=93.47 E-value=1.4 Score=37.87 Aligned_cols=83 Identities=14% Similarity=0.204 Sum_probs=51.3
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKK----------TLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~----------~LnsEVeqLRsEfqeLRttLq 90 (144)
+..+++++.....++...++.++ .....+..+++....+|..+.. .++.++..|..++.+++..|.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~----~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQ----QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444444444333 3333444444444444444433 346788888899999999999
Q ss_pred HhHHHHhhhhhhccccc
Q 032236 91 QQQDDVTASLRNLGLQD 107 (144)
Q Consensus 91 qQ~e~~ta~L~nL~lqd 107 (144)
++.+.+...++.+..-+
T Consensus 121 ~~~~~l~~rlra~Y~~g 137 (428)
T PRK11637 121 AQERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99888888888877644
No 8
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=92.92 E-value=0.71 Score=35.87 Aligned_cols=54 Identities=26% Similarity=0.464 Sum_probs=36.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 50 RSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 50 RskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
|..+.+||++....|-+|++. +..++.|+.++.+|.+...+..+...+.|+.+-
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~-~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKS-AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888899999999883 566667777777777666655555555544443
No 9
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.85 E-value=2.3 Score=34.21 Aligned_cols=64 Identities=19% Similarity=0.432 Sum_probs=45.3
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
...+|..+.+.+.+|+.+++.|+.++.+ .+.|...+..+-..++.+++.|...+.++..+-++-
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~--------L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIEN--------LEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999998864 334566666666666666666666665555544443
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.77 E-value=2.2 Score=34.39 Aligned_cols=84 Identities=20% Similarity=0.452 Sum_probs=63.8
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHH----------hhHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVK---IYRDELTDMKKT----------LSVEVEQLRSEFQE 84 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVK---tYr~EL~dLK~~----------LnsEVeqLRsEfqe 84 (144)
+..+-..|..+..-+..|..-+.+|+.++.++|.+++.... ....++..||+. |..+|+.|+.|+.-
T Consensus 56 l~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 56 LRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 34556778888888999999999999999999998887653 344566666654 56678888888888
Q ss_pred HHHHHHHhHHHHhhhhh
Q 032236 85 LRSTLQQQQDDVTASLR 101 (144)
Q Consensus 85 LRttLqqQ~e~~ta~L~ 101 (144)
++..-.+++..+.+.+.
T Consensus 136 l~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 136 LKQNHEEEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHTTSTT--
T ss_pred HHhhhhhhhhhhhhccc
Confidence 88888887777776664
No 11
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=92.74 E-value=1.7 Score=34.72 Aligned_cols=75 Identities=19% Similarity=0.437 Sum_probs=60.1
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL-----------SVEVEQLRSEFQELRST 88 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L-----------nsEVeqLRsEfqeLRtt 88 (144)
-+-.+++++..+-+.|+....+|.+.+.+-| .|++|+..|+.-- |.++.+|..|=.+||.+
T Consensus 14 ~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~--------~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~ 85 (181)
T PF05769_consen 14 RLVERLKDHDNAADSLLSQAEALNKQIESMR--------QYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQS 85 (181)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999998877 8999988886642 46788999999999999
Q ss_pred HHHhHHHHhhhhhh
Q 032236 89 LQQQQDDVTASLRN 102 (144)
Q Consensus 89 LqqQ~e~~ta~L~n 102 (144)
|.+=+..+-.-...
T Consensus 86 leEhq~alelIM~K 99 (181)
T PF05769_consen 86 LEEHQSALELIMSK 99 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 98776655443333
No 12
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.97 E-value=2.5 Score=36.93 Aligned_cols=84 Identities=18% Similarity=0.347 Sum_probs=59.8
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRS---KLDTQVKIYRDELTDM---KKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRs---kLDtQVKtYr~EL~dL---K~~LnsEVeqLRsEfqeLRttLqq 91 (144)
+.+...++..|.++..++..+=..|-+++-.||+ .|+.+|+-|++.+..+ +..+|-+|.+||.+-.++...++.
T Consensus 8 ~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 8 LDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666666666666655 5778999999877766 567899999999999999999888
Q ss_pred hHHHHhhhhh
Q 032236 92 QQDDVTASLR 101 (144)
Q Consensus 92 Q~e~~ta~L~ 101 (144)
....+-.-..
T Consensus 88 L~~~~~~l~e 97 (294)
T COG1340 88 LRKEYRELKE 97 (294)
T ss_pred HHHHHHHHHH
Confidence 6665443333
No 13
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.62 E-value=3.3 Score=40.69 Aligned_cols=80 Identities=23% Similarity=0.400 Sum_probs=58.9
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDEL----TDMKKTLSVEVEQLRSEFQELRSTLQQQQDDV 96 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL----~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ 96 (144)
+.++...++.....|-.++..+++.++.|...+..+.+..+.|+ .++-..++..++++..+.+..++..+.++..+
T Consensus 676 ~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~l 755 (1201)
T PF12128_consen 676 KEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKEL 755 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777788888999999999999999988888776554 66666677777777777777777776666655
Q ss_pred hhhh
Q 032236 97 TASL 100 (144)
Q Consensus 97 ta~L 100 (144)
...+
T Consensus 756 e~~~ 759 (1201)
T PF12128_consen 756 EQQY 759 (1201)
T ss_pred HHHH
Confidence 4443
No 14
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=91.46 E-value=3.1 Score=28.14 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=48.1
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTAS 99 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~ 99 (144)
.+..++.+...+...|-..+..++.-...=+..+......|..-|..-+..|-.+++..+ .+....|..|+..+...
T Consensus 11 ~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~---~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 11 KLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQK---ENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344556666666666666666777777777777777777777777777766655555444 33334444444444444
Q ss_pred hhh
Q 032236 100 LRN 102 (144)
Q Consensus 100 L~n 102 (144)
+..
T Consensus 88 l~~ 90 (127)
T smart00502 88 QEK 90 (127)
T ss_pred HHH
Confidence 443
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.43 E-value=3.5 Score=35.58 Aligned_cols=51 Identities=22% Similarity=0.431 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhHHHHhhhhhhcc
Q 032236 54 DTQVKIYRDELTDMKKTLSVEVEQLRSEFQELR---STLQQQQDDVTASLRNLG 104 (144)
Q Consensus 54 DtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLR---ttLqqQ~e~~ta~L~nL~ 104 (144)
..+++.|+.-+..++..+...++.++.++.++. ..|+.|++.+...|.+|+
T Consensus 194 ~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555555554444 444555555555555555
No 16
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=91.39 E-value=3 Score=27.76 Aligned_cols=58 Identities=17% Similarity=0.339 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
++|..++.+|+..-.+..+--..|+-.|...-. ..|..+++.|...|+++..|+..|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~---s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP---SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777777777666666666666666655522 5566666666677777666666554
No 17
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.69 E-value=5.6 Score=30.16 Aligned_cols=36 Identities=28% Similarity=0.461 Sum_probs=15.9
Q ss_pred cCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHH
Q 032236 15 KENITPVGSKIAELNESRAELLNRIQGLKQDLQNWR 50 (144)
Q Consensus 15 k~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WR 50 (144)
.+.+..++..|.+|++-=.+|=..+..|..+|.+-+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555554444444443333333333333
No 18
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.68 E-value=5.7 Score=34.17 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
.|..+..+|.+....|+.|+.+|+
T Consensus 169 ~l~~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 169 LLNSIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555554
No 19
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.21 E-value=6.1 Score=29.32 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=33.2
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDEL 64 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL 64 (144)
.-+.+.|..+.+.-...-.+++.++.||..=+.....-=..|..||
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El 51 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYEREL 51 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888776665555555566555
No 20
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.00 E-value=3.5 Score=35.47 Aligned_cols=69 Identities=22% Similarity=0.406 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhccccc
Q 032236 39 IQGLKQDLQNWRSKLDTQVKIYRDELTDMKK---TLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLGLQD 107 (144)
Q Consensus 39 vq~LK~DLq~WRskLDtQVKtYr~EL~dLK~---~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~lqd 107 (144)
++.=++++|+=-..||.||..-...+.++++ .++.|+.+|..++.+++..|..+.+.+-..+|-+..=+
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333445555556688888888888888775 56789999999999999999999999988888776544
No 21
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.94 E-value=6 Score=36.64 Aligned_cols=63 Identities=24% Similarity=0.351 Sum_probs=32.9
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRS-------KLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRs-------kLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL 85 (144)
.++++++.-..+|+.-=..||++-..+|. ++.+-|..++.|+..=+..|..|+.+|+..+++|
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544556666666654 4555555666555554444444444444444443
No 22
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=89.71 E-value=6.8 Score=31.19 Aligned_cols=65 Identities=23% Similarity=0.442 Sum_probs=53.8
Q ss_pred HHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 032236 34 ELLNRIQGLKQ--DLQNWRSKLDTQVKIYRDELTDMKKTLS----VEVEQLRSEFQELRSTLQQQQDDVTAS 99 (144)
Q Consensus 34 ELL~Rvq~LK~--DLq~WRskLDtQVKtYr~EL~dLK~~Ln----sEVeqLRsEfqeLRttLqqQ~e~~ta~ 99 (144)
..+.+++.+++ ++++=-+.+++.+...+.|++-|+. .| ..+|.|....-|||..|...++.+++.
T Consensus 45 ~~~r~~~~~r~~~~~~~~v~~~~~~i~~k~~El~~L~~-~d~~kv~~~E~L~d~v~eLkeel~~el~~l~~~ 115 (146)
T PF05852_consen 45 KSLRSHNSLREECEIKNKVSSLETEISEKKKELSHLKK-FDRKKVEDLEKLTDRVEELKEELEFELERLQSA 115 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666777765 5667777888999999999999887 55 578999999999999999999998776
No 23
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=89.47 E-value=4.9 Score=27.18 Aligned_cols=53 Identities=11% Similarity=0.245 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 41 GLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 41 ~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
.-...+.++...|+..+..........+..+..+++.|+.-+.+-+..|-.++
T Consensus 14 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l 66 (127)
T smart00502 14 KKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDL 66 (127)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555544444444444444444444444444443333333333
No 24
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.41 E-value=6 Score=38.63 Aligned_cols=67 Identities=27% Similarity=0.464 Sum_probs=48.4
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELR 86 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLR 86 (144)
.-++..+.+|.++..++-.|+..++.++..+...+ +..+.+..++...+..+..++..++.++.+++
T Consensus 740 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1163)
T COG1196 740 EELEEELEELEEELEELQERLEELEEELESLEEAL-AKLKEEIEELEEKRQALQEELEELEEELEEAE 806 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777778888888888888888888777 66666666666666666666666666666654
No 25
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.36 E-value=5.1 Score=32.37 Aligned_cols=67 Identities=24% Similarity=0.588 Sum_probs=35.2
Q ss_pred HHhHhHHhHHHHHHHHHHHHH-------HHHHHHhhhHHH----HHHHHHHHHHHHHH----------hhHHHHHHHHHH
Q 032236 24 KIAELNESRAELLNRIQGLKQ-------DLQNWRSKLDTQ----VKIYRDELTDMKKT----------LSVEVEQLRSEF 82 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~-------DLq~WRskLDtQ----VKtYr~EL~dLK~~----------LnsEVeqLRsEf 82 (144)
.|..||+-=...+.||+.|.. ++..|+.+.... -..|..||.+|+.. |-.++..|+.++
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~ 84 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence 466777777777777777655 444454442121 22366666655544 445666666666
Q ss_pred HHHHHHHH
Q 032236 83 QELRSTLQ 90 (144)
Q Consensus 83 qeLRttLq 90 (144)
.++|..+.
T Consensus 85 ~~~r~k~e 92 (312)
T PF00038_consen 85 EDLRRKYE 92 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.23 E-value=5.3 Score=32.57 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 032236 71 LSVEVEQLRSEFQELRST 88 (144)
Q Consensus 71 LnsEVeqLRsEfqeLRtt 88 (144)
++..+..|+.+-++|+..
T Consensus 130 ~~~~~~~L~~~n~~L~~~ 147 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQ 147 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 27
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.10 E-value=4 Score=37.78 Aligned_cols=61 Identities=28% Similarity=0.424 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHHHHHHHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKK------------------TLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~------------------~LnsEVeqLRsEfqeLRttLqq 91 (144)
+.=.-|..+++.++++++. |..|=+..+.|-..||+ .|..|.++|+++.+.++..|++
T Consensus 59 DTlrTlva~~k~~r~~~~~----l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAK----LISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred chHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777777777664 55556666666666655 3444666777776666555544
Q ss_pred hHH
Q 032236 92 QQD 94 (144)
Q Consensus 92 Q~e 94 (144)
-+.
T Consensus 135 l~~ 137 (472)
T TIGR03752 135 LQR 137 (472)
T ss_pred HHH
Confidence 333
No 28
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.94 E-value=8.4 Score=29.18 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 032236 75 VEQLRSEFQELR 86 (144)
Q Consensus 75 VeqLRsEfqeLR 86 (144)
+..+.++|.+++
T Consensus 139 ~~~~~~e~~~l~ 150 (191)
T PF04156_consen 139 IKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 29
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.79 E-value=3.9 Score=34.50 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=32.6
Q ss_pred cCCccchhhHHhHhHHhHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHH
Q 032236 15 KENITPVGSKIAELNESRAELLNR-------IQGLKQDLQNWRSKLDTQVKIYRDE 63 (144)
Q Consensus 15 k~~~~pi~~ki~ELneSr~ELL~R-------vq~LK~DLq~WRskLDtQVKtYr~E 63 (144)
.+.+..+..++.++.....+|..| |+.|+..+...+..|+.++..+...
T Consensus 253 ~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~ 308 (444)
T TIGR03017 253 NPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSS 308 (444)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777664 6777777777777777666554443
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.70 E-value=11 Score=31.73 Aligned_cols=67 Identities=24% Similarity=0.480 Sum_probs=31.4
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLD-------TQVKIYRDELTDMKKTLS---VEVEQLRSEFQELRS 87 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLD-------tQVKtYr~EL~dLK~~Ln---sEVeqLRsEfqeLRt 87 (144)
+.+.+..+++...+|..|-+.|+.++..=|.... ..+..+|.||..++..+. .++.+|+.+++.++.
T Consensus 168 L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 168 LDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555544433 234444444444443332 234444444444433
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.57 E-value=13 Score=31.32 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=26.6
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 25 IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
++=++.-+..|..++..|+.|...=+. .-.+|..+..+|...+..|..|+..|+
T Consensus 144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~-~~~~l~~~~~~l~~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 144 MQLLEGLKEGLEENLELLQEDYAKLDK-QLEQLDELLPKLRERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555566666665544442 223444444455555555555555544
No 32
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.44 E-value=5.7 Score=34.02 Aligned_cols=61 Identities=21% Similarity=0.436 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhhHHHH--------------HHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHhHHHH
Q 032236 38 RIQGLKQDLQNWRSKLDTQV--------------KIYRDELTDMKKTLSV-------EVEQLRSEFQELRSTLQQQQDDV 96 (144)
Q Consensus 38 Rvq~LK~DLq~WRskLDtQV--------------KtYr~EL~dLK~~Lns-------EVeqLRsEfqeLRttLqqQ~e~~ 96 (144)
+++.+|.||+.|..++...| +.++.||.-|.+--.. -|..|...++.++..-+.+++++
T Consensus 64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel 143 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888877655444 4455555555443322 35556667777777777777665
Q ss_pred hh
Q 032236 97 TA 98 (144)
Q Consensus 97 ta 98 (144)
.-
T Consensus 144 ~e 145 (258)
T PF15397_consen 144 NE 145 (258)
T ss_pred HH
Confidence 43
No 33
>PRK11637 AmiB activator; Provisional
Probab=88.34 E-value=9.9 Score=32.79 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Q 032236 42 LKQDLQNWRSKLDTQVKIYRDELTDMKKTLS---VEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 42 LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln---sEVeqLRsEfqeLRttLq 90 (144)
++.+++.=+..|.++.+..+.++..|++.+. .++.+|+.+-+.|...|.
T Consensus 199 ~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 199 LLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443322 344445444444444444
No 34
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=88.30 E-value=8.1 Score=30.72 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 32 RAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
-.+|-..+..|+..+..|+.+++.-.+..........+....||+.|+..-+.|++-|+
T Consensus 129 i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 129 IEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444445555555555555555555555555566666666665555555443
No 35
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=88.20 E-value=12 Score=30.20 Aligned_cols=75 Identities=24% Similarity=0.482 Sum_probs=50.6
Q ss_pred hHhHHhHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH-------------HHHHHHHHH
Q 032236 26 AELNESRAELLNRIQGL----KQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR-------------SEFQELRST 88 (144)
Q Consensus 26 ~ELneSr~ELL~Rvq~L----K~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR-------------sEfqeLRtt 88 (144)
.||.+.+ .||+||+.. ..+.+.=...+...+..|...|.||+..|+.=+...+ .+|+.=+..
T Consensus 153 ~El~~A~-~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~ 231 (264)
T PF06008_consen 153 DELKEAE-DLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQE 231 (264)
T ss_pred HHHHHHH-HHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 789999875 3466666677888999999999999998876444443 355555556
Q ss_pred HHHhHHHHhhhhh
Q 032236 89 LQQQQDDVTASLR 101 (144)
Q Consensus 89 LqqQ~e~~ta~L~ 101 (144)
|+.++..++..|.
T Consensus 232 l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 232 LSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555443
No 36
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=88.00 E-value=5.2 Score=33.15 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=55.1
Q ss_pred hHHhHhHHhHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh--------------hHHHHHHHHHH
Q 032236 23 SKIAELNESRA------ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL--------------SVEVEQLRSEF 82 (144)
Q Consensus 23 ~ki~ELneSr~------ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L--------------nsEVeqLRsEf 82 (144)
+-|.||+.|+. .|+++-+.||+ +..+.+.++..++.|...| +-++-.++.--
T Consensus 52 ElI~ELkqsKklydnYYkL~~KY~~LK~--------~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~ 123 (196)
T PF15272_consen 52 ELINELKQSKKLYDNYYKLYSKYQELKK--------SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRN 123 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45888888885 79999999998 7777788777777777777 33333444444
Q ss_pred HHHHHHHHHhHHHHhhhhhhcccc
Q 032236 83 QELRSTLQQQQDDVTASLRNLGLQ 106 (144)
Q Consensus 83 qeLRttLqqQ~e~~ta~L~nL~lq 106 (144)
++|.+..+.+...-.+.|++|..|
T Consensus 124 ~el~~~r~~e~~~YesRI~dLE~~ 147 (196)
T PF15272_consen 124 KELQNERERERIAYESRIADLERQ 147 (196)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 566666667777778888888876
No 37
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.86 E-value=0.16 Score=48.33 Aligned_cols=87 Identities=23% Similarity=0.496 Sum_probs=0.0
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----------H
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL----------R 86 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL----------R 86 (144)
++..+-..+.+-.+++.+|-..|..+..+|..||.++++.+-.--.+|-+.|+.|...+..+...+.++ +
T Consensus 272 e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k 351 (859)
T PF01576_consen 272 ELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTK 351 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888889999999999999999999999999998888899999999988888777665554 4
Q ss_pred HHHHHhHHHHhhhhhhc
Q 032236 87 STLQQQQDDVTASLRNL 103 (144)
Q Consensus 87 ttLqqQ~e~~ta~L~nL 103 (144)
..|+.+++|++..|.+.
T Consensus 352 ~rL~~EleDl~~eLe~~ 368 (859)
T PF01576_consen 352 KRLQGELEDLTSELEKA 368 (859)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666667666555443
No 38
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.17 E-value=7.2 Score=39.42 Aligned_cols=95 Identities=21% Similarity=0.338 Sum_probs=70.9
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRS-----------------KLDTQVKIYRDELTDMKKTLSVEVEQLRSE 81 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRs-----------------kLDtQVKtYr~EL~dLK~~LnsEVeqLRsE 81 (144)
+-+.++|+++..-.+.-=.++++++++|.+-|. ++---|.-|+..++++++.+|.+|.-.+.+
T Consensus 319 teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e 398 (1074)
T KOG0250|consen 319 TEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEE 398 (1074)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 445666666666666666677788888888777 233446677888899999998888888888
Q ss_pred HHHHHHHHHHhHHHHhhhhhhcc--cccCCCCcc
Q 032236 82 FQELRSTLQQQQDDVTASLRNLG--LQDFSGDDK 113 (144)
Q Consensus 82 fqeLRttLqqQ~e~~ta~L~nL~--lqd~~~d~~ 113 (144)
...=...|+++.+.+...+..|+ ++++..+..
T Consensus 399 ~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 399 RENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999988888887 555554433
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.68 E-value=15 Score=31.76 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=38.0
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK---KTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK---~~LnsEVeqLRsEfqeLRtt 88 (144)
.+|..|......+-.++..+...+.+-+..++..+..++.++..+. ..|.++++.|+.++.+++..
T Consensus 181 ~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 181 QQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444444455555555555555555555666666666555 55666777777777777543
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=84.95 E-value=7.9 Score=41.04 Aligned_cols=89 Identities=19% Similarity=0.452 Sum_probs=70.6
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----------HHHHHHHHHhh---HHHHHHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYR-----------DELTDMKKTLS---VEVEQLRSE 81 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr-----------~EL~dLK~~Ln---sEVeqLRsE 81 (144)
.++.|++..+.+|...=++...-+-.|+.+...|+-+-.-=|.+|+ .|++.|+..|- ..++-|..+
T Consensus 1257 ~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~ 1336 (1822)
T KOG4674|consen 1257 FELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKE 1336 (1822)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999998887777754 45666655543 345566788
Q ss_pred HHHHHHHHHHhHHHHhhhhhhcc
Q 032236 82 FQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 82 fqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
|..+|.++++|.+.++...+++-
T Consensus 1337 ~~~~q~~~k~qld~l~~e~~~lt 1359 (1822)
T KOG4674|consen 1337 LNRLQEKIKKQLDELNNEKANLT 1359 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988877766653
No 41
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=84.84 E-value=13 Score=29.18 Aligned_cols=61 Identities=25% Similarity=0.479 Sum_probs=49.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 29 NESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 29 neSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
.+.+..+..+|..|...++.+..+.+..| .+|..+|..|...+..|++....+.+.|..+-
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i----~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~ 162 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALI----NELNDFKDKLQKDSRNLKTDVDELQSILAGEN 162 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Confidence 67788999999999999988887766555 68889999999999999988888888776543
No 42
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.26 E-value=13 Score=29.63 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=30.0
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHH
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQNW--RSKLDTQVKIYRDELTDMKKTLS-------VEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~W--RskLDtQVKtYr~EL~dLK~~Ln-------sEVeqLRsEfqeLRttLq 90 (144)
.|..+.....+|-.+|..+|..-.+. |..+-..++..+.++..|++.|. ..|++++.+.+.++.++.
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~an 152 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443322222 44444444444445544444444 335555555555555544
No 43
>PRK04098 sec-independent translocase; Provisional
Probab=83.54 E-value=5.6 Score=32.01 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 032236 61 RDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 61 r~EL~dLK~~LnsEVeqLRs 80 (144)
+.|+...|..|.+.++.||+
T Consensus 60 k~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 60 KEEALKYKKEFESAVESLKK 79 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334445555555665655
No 44
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=83.37 E-value=14 Score=32.19 Aligned_cols=71 Identities=31% Similarity=0.495 Sum_probs=37.6
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRS-----KLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRs-----kLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
+..++..|.+-..++..++..|++.|..... +++..-+.....+...+..|+.++..|+.++.+|+..|..
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666666666555543 1222222333344444455555666666666555555544
No 45
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=83.17 E-value=17 Score=27.27 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=45.2
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-------------------hHH----
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL-------------------SVE---- 74 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L-------------------nsE---- 74 (144)
+.||..-|.+=.+.=.+-|.....++.++..++......+...|.|-..++... +.+
T Consensus 29 ~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a 108 (141)
T PRK08476 29 YKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAF 108 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555556666666555555555554444433333222 222
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhh
Q 032236 75 VEQLRSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 75 VeqLRsEfqeLRttLqqQ~e~~ta~L 100 (144)
..+|+.+..++...|+.|.++++..+
T Consensus 109 ~~~l~~e~~~~~~~l~~qv~~~~~~~ 134 (141)
T PRK08476 109 AKQLANQKQELKEQLLSQMPEFKEAL 134 (141)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 23455666677777777777766654
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.10 E-value=22 Score=35.20 Aligned_cols=38 Identities=16% Similarity=0.377 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 42 LKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 42 LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
|+.+...|+.++....+.-+..+..=...|..++.++.
T Consensus 661 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 661 LKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333333333333333333
No 47
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=83.05 E-value=13 Score=25.59 Aligned_cols=83 Identities=25% Similarity=0.306 Sum_probs=62.0
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHH-----HHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQ-----VKI---YRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQ-----VKt---Yr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e 94 (144)
..|.++..-+..|+.+|..+-+..+.|..++... +.. -+.+|..+...|..-++.++..-..-+..|+..++
T Consensus 37 ~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~ 116 (143)
T PF05130_consen 37 DELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIEEREELQALWRELRELLEELQELNERNQQLLEQALE 116 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999988765 222 45667777777777777777777777777777777
Q ss_pred HHhhhhhhccc
Q 032236 95 DVTASLRNLGL 105 (144)
Q Consensus 95 ~~ta~L~nL~l 105 (144)
-+...|.-+.-
T Consensus 117 ~~~~~l~~l~~ 127 (143)
T PF05130_consen 117 FVQQLLNLLQP 127 (143)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHHHhc
Confidence 77666666653
No 48
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.65 E-value=15 Score=27.17 Aligned_cols=52 Identities=25% Similarity=0.446 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 36 LNRIQGLKQDLQNWRS---KLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 36 L~Rvq~LK~DLq~WRs---kLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
+..|+.||.+++.-+. .|-+.+.+.+.+|...+.+...+=..|..++.+++.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555554443222 222333334444444444444444444444444433
No 49
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=82.57 E-value=9.9 Score=25.23 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=28.6
Q ss_pred HhHHhHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHh
Q 032236 27 ELNESRAELLNRIQGLKQDLQ----NWRSKLDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 27 ELneSr~ELL~Rvq~LK~DLq----~WRskLDtQVKtYr~EL~dLK~~L 71 (144)
+....-.|.-.=|..|.-+++ +=|..+.+.|+.||.+|..||+.|
T Consensus 29 ~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 29 EIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333444444443 678888999999999998888765
No 50
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=82.49 E-value=10 Score=33.17 Aligned_cols=64 Identities=23% Similarity=0.516 Sum_probs=36.1
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNW---RSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~W---RskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
..+.++.+-|.+|-.+|+.|..-.+.- |..+..+|..|+++-.+ +|..+..|+.++.+++.++.
T Consensus 34 ~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~e----in~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 34 KEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE----INAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555444433 44556677766666443 45555557776666666554
No 51
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=82.20 E-value=8.9 Score=35.25 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMK 68 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK 68 (144)
+.|+||.+|.+|++.--.|+.+.-
T Consensus 282 etqdar~kL~~ql~k~leEi~~~e 305 (421)
T KOG2685|consen 282 ETQDARNKLEWQLAKTLEEIADAE 305 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999888876643
No 52
>PHA03161 hypothetical protein; Provisional
Probab=82.16 E-value=17 Score=29.36 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHhHHHHh
Q 032236 33 AELLNRIQGLKQ--DLQNWRSKLDTQVKIYRDELTDMKKTLS----VEVEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 33 ~ELL~Rvq~LK~--DLq~WRskLDtQVKtYr~EL~dLK~~Ln----sEVeqLRsEfqeLRttLqqQ~e~~t 97 (144)
..+|.+.+.+|+ ++++--+.+++.+..-+.|++-|++ +| ..+|.|..-..|||..|..+++.++
T Consensus 44 ~~~lr~~~~~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~-fd~kkl~~~E~L~drv~eLkeel~~ELe~l~ 113 (150)
T PHA03161 44 KKSLIKHENLKKQKSIEGMLQAVDLSIQEKKKELSLLKA-FDRHKLSAAEDLQDKILELKEDIHFEIEALN 113 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888886 6888888999999999999999987 55 5788899999999999999998765
No 53
>PRK11546 zraP zinc resistance protein; Provisional
Probab=81.95 E-value=12 Score=29.70 Aligned_cols=71 Identities=13% Similarity=0.246 Sum_probs=37.8
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVE-VEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsE-VeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
++.+.++.-..+.......|+++|..=|..|+...-+=.-. .+ |.+|.+|+.+||+.|.++.-.....++
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD---------~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~ 117 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPD---------SSKINAVAKEMENLRQSLDELRVKRDIAMA 117 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666667777777777776665555444432221111 11 445555555555555555554444444
Q ss_pred h
Q 032236 102 N 102 (144)
Q Consensus 102 n 102 (144)
.
T Consensus 118 k 118 (143)
T PRK11546 118 E 118 (143)
T ss_pred H
Confidence 4
No 54
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=81.94 E-value=31 Score=30.77 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=9.2
Q ss_pred HHHHHHHhHHHHhhhhhh
Q 032236 85 LRSTLQQQQDDVTASLRN 102 (144)
Q Consensus 85 LRttLqqQ~e~~ta~L~n 102 (144)
|+..|+.|.+.....|+|
T Consensus 331 L~~eL~~~~~~~~~~l~~ 348 (582)
T PF09731_consen 331 LRQELKRQEEAHEEHLKN 348 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
No 55
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=81.93 E-value=18 Score=30.58 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHhhHHHHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLD---TQVKIYRDELTDMKKTLSVEVEQL 78 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLD---tQVKtYr~EL~dLK~~LnsEVeqL 78 (144)
.|..++..+..+|...+.+.. -.|...+.++..|+..|+.|+..+
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~ 305 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKV 305 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666555432 245555666666666666655544
No 56
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.90 E-value=3.6 Score=30.14 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=25.6
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQV 57 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQV 57 (144)
..+..+..+|.+|-..-+.||++.+.|-.+|..=+
T Consensus 39 ~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 39 QEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556678888888888888888888876543
No 57
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=81.80 E-value=6.9 Score=31.29 Aligned_cols=46 Identities=24% Similarity=0.469 Sum_probs=38.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 46 LQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 46 Lq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
+..+-..|+.|++.|...+..+...|...-++|+..|..|-+.|.+
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888899999999999988888999988888777654
No 58
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=81.72 E-value=21 Score=27.26 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=10.8
Q ss_pred HHhhhhhhcccccCCCCc
Q 032236 95 DVTASLRNLGLQDFSGDD 112 (144)
Q Consensus 95 ~~ta~L~nL~lqd~~~d~ 112 (144)
.....|+.||. +++.|.
T Consensus 102 kyk~rLk~LG~-eVSddE 118 (136)
T PF04871_consen 102 KYKERLKELGE-EVSDDE 118 (136)
T ss_pred HHHHHHHHcCC-CccCCc
Confidence 34567888997 455444
No 59
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.35 E-value=11 Score=35.80 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=13.4
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDL 46 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DL 46 (144)
.+|+++..+-|..|..|++.+-+-+
T Consensus 599 aeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 599 AERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444
No 60
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=80.09 E-value=19 Score=31.89 Aligned_cols=55 Identities=33% Similarity=0.436 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
-|+-||++||++-.+. +..|..|=.-|-+.|..-+.+|+.|--+|-.+|.+.++.
T Consensus 81 ~LlKkl~~l~keKe~L-------~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~ 135 (310)
T PF09755_consen 81 TLLKKLQQLKKEKETL-------ALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEY 135 (310)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4788889988876543 456777767777888888888888877777777766654
No 61
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=80.04 E-value=36 Score=30.72 Aligned_cols=85 Identities=18% Similarity=0.318 Sum_probs=53.9
Q ss_pred CCcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHH----HHHh----------hhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 032236 13 PKKENITPVGSKIAELNESRAELLNRIQGLKQDLQ----NWRS----------KLDTQVKIYRDELTDMKKTLSVEVEQL 78 (144)
Q Consensus 13 ~rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq----~WRs----------kLDtQVKtYr~EL~dLK~~LnsEVeqL 78 (144)
+....+.++...+.|+.+.+..|-..++.||.+++ --.. +|+.||. |+-..--.||..|
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlN-------d~~elHq~Ei~~L 281 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLN-------DLTELHQNEIYNL 281 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34446778888889999999999888888887544 2111 3344433 3333333455555
Q ss_pred HHHHHHHHH-----------HHHHhHHHHhhhhhhcc
Q 032236 79 RSEFQELRS-----------TLQQQQDDVTASLRNLG 104 (144)
Q Consensus 79 RsEfqeLRt-----------tLqqQ~e~~ta~L~nL~ 104 (144)
|.+|..|-. -|++=+|...+.+..|+
T Consensus 282 KqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 282 KQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555544443 35666788888888888
No 62
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=79.95 E-value=15 Score=33.05 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=16.4
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032236 26 AELNESRAELLNRIQGLKQDLQNWRSKLDTQVKI 59 (144)
Q Consensus 26 ~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKt 59 (144)
.++++...++-..+..+.+-++.|...+...+.+
T Consensus 302 ~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (511)
T PF09787_consen 302 AELQDLEAQLEGEQESFREQPQELSQQLEPELTT 335 (511)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch
Confidence 3344444444444555555555555555444444
No 63
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=79.92 E-value=21 Score=27.57 Aligned_cols=62 Identities=24% Similarity=0.422 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHH---HHHHHhHHHH
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDEL-------TDMKKTLSVEVEQLRSEFQELR---STLQQQQDDV 96 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL-------~dLK~~LnsEVeqLRsEfqeLR---ttLqqQ~e~~ 96 (144)
++.|+..+-.++-.++.+++.--+.-.+.- .+-.+.++.|++.|+.|+.... .+|++|-+.+
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888877665444433332 2333456677777776666532 2445554443
No 64
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=79.72 E-value=36 Score=30.84 Aligned_cols=59 Identities=27% Similarity=0.504 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHh-hhHH-------------HHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhHHH
Q 032236 37 NRIQGLKQDLQNWRS-KLDT-------------QVKIYRDELTDMKKTLS---VEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRs-kLDt-------------QVKtYr~EL~dLK~~Ln---sEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
.-|..|+.+|..|+. +++. .|.+.+.||.+.|..|+ .|+..|+..+.-||+-|......
T Consensus 249 ~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e 324 (522)
T PF05701_consen 249 AELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEE 324 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777775 4443 27888888988888775 56666666666666655554444
No 65
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=79.71 E-value=9.3 Score=25.86 Aligned_cols=45 Identities=36% Similarity=0.519 Sum_probs=37.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 46 LQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 46 Lq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
+.-|. -|+.-.+.|..=|.+ |..|..|++.|+.+=.+||+-|+|-
T Consensus 15 ~~~W~-~L~~~l~rY~~vL~~-R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 15 IRLWD-ALENFLKRYNKVLLD-RAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44565 488899999876665 7889999999999999999999874
No 66
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.58 E-value=12 Score=33.85 Aligned_cols=79 Identities=20% Similarity=0.403 Sum_probs=42.2
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhHHHHh
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVE-VEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsE-VeqLRsEfqeLRttLqqQ~e~~t 97 (144)
.-+..++.++...+.++-..|++|.++-..=|.+ ++.|+..|.+++..+..- +-.+-..|.++-..+...+..+.
T Consensus 386 eel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~k----L~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~ 461 (569)
T PRK04778 386 EEILKQLEEIEKEQEKLSEMLQGLRKDELEAREK----LERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALA 461 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777665544433 445555555555433222 33333444444444444444444
Q ss_pred hhhh
Q 032236 98 ASLR 101 (144)
Q Consensus 98 a~L~ 101 (144)
..|.
T Consensus 462 ~~L~ 465 (569)
T PRK04778 462 EELE 465 (569)
T ss_pred HHhc
Confidence 4443
No 67
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.27 E-value=28 Score=27.24 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=49.9
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSK---LDTQVKIYRDELTDMKKT----------LSVEVEQLRSEFQELR 86 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRsk---LDtQVKtYr~EL~dLK~~----------LnsEVeqLRsEfqeLR 86 (144)
-+..++++-..-.+-|=+||-+|-.||+.=..+ +-.+..+++.|+..|+.- |..|+.-||+|-..|-
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566889999999999877766 555667888888777653 3445555666655555
Q ss_pred HHHHHhHH
Q 032236 87 STLQQQQD 94 (144)
Q Consensus 87 ttLqqQ~e 94 (144)
..|++-++
T Consensus 87 k~lq~~q~ 94 (140)
T PF10473_consen 87 KELQKKQE 94 (140)
T ss_pred HHHHHHHH
Confidence 55555444
No 68
>PF14282 FlxA: FlxA-like protein
Probab=79.04 E-value=22 Score=25.88 Aligned_cols=59 Identities=29% Similarity=0.462 Sum_probs=39.5
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRS--KLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRs--kLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
+..|+.|+.- |+.|.+.|+.|.. .|+...|..+ ...|..++..|...++.|.....++.
T Consensus 18 ~~~I~~L~~Q-------i~~Lq~ql~~l~~~~~~~~e~k~~q------~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQ-------IKQLQEQLQELSQDSDLDAEQKQQQ------IQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHcccCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887765 4555555555554 5677777544 45678888888888887766655544
No 69
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.87 E-value=34 Score=27.93 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 032236 71 LSVEVEQLRSEFQELRS 87 (144)
Q Consensus 71 LnsEVeqLRsEfqeLRt 87 (144)
|+.|-++|+.+++.+++
T Consensus 137 L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 137 LKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 70
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.53 E-value=30 Score=27.07 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhc
Q 032236 81 EFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 81 EfqeLRttLqqQ~e~~ta~L~nL 103 (144)
.+..+...+...+..+-..|..+
T Consensus 134 ~l~~l~~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 134 RLSQLQSQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444443
No 71
>PRK15396 murein lipoprotein; Provisional
Probab=78.36 E-value=6.3 Score=28.34 Aligned_cols=45 Identities=29% Similarity=0.490 Sum_probs=31.1
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQN-------WRSKLDTQVKIYR 61 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~-------WRskLDtQVKtYr 61 (144)
.+..+.+.|..|+.-...|.+-++.++.+++. =-.+||++|.+|+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy~ 77 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKYR 77 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55566777777777777777777766665543 3357888888885
No 72
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.35 E-value=21 Score=27.50 Aligned_cols=8 Identities=25% Similarity=0.638 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 032236 61 RDELTDMK 68 (144)
Q Consensus 61 r~EL~dLK 68 (144)
..|+..||
T Consensus 160 ~~ei~~lk 167 (192)
T PF05529_consen 160 SEEIEKLK 167 (192)
T ss_pred HHHHHHHH
Confidence 34444333
No 73
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=78.13 E-value=13 Score=33.00 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=66.1
Q ss_pred CcCCccchhhHHhHhHHhHHHHHHHHHHHH------HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 14 KKENITPVGSKIAELNESRAELLNRIQGLK------QDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 14 rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK------~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
+..-+.-+-..-..+...|.++|.++..+. ..+..|+..|..=.+.+-.-.-..-..|..+.+....++..+..
T Consensus 206 ~~~~~e~~~~~Q~~l~~~r~~~L~~l~~l~Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve 285 (473)
T PF14643_consen 206 RKQLLEQMRKEQVDLHEKRLELLQSLCDLLPPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEKICQECLALVE 285 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666667778889999999998774 67999999998888777777777778888888888888888888
Q ss_pred HHHHhHHH
Q 032236 88 TLQQQQDD 95 (144)
Q Consensus 88 tLqqQ~e~ 95 (144)
++++++..
T Consensus 286 ~~k~~L~~ 293 (473)
T PF14643_consen 286 KLKQELLD 293 (473)
T ss_pred HHHHHHHH
Confidence 88888776
No 74
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=77.84 E-value=33 Score=27.26 Aligned_cols=83 Identities=7% Similarity=0.195 Sum_probs=48.1
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------------------HHHHHhhHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELT-----------------------DMKKTLSVEV 75 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~-----------------------dLK~~LnsEV 75 (144)
.||..-|.+=...=..=|..-...|.+...=+.....++...|.|.. +|++.||.|+
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~ 112 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNI 112 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333444445555555555555555555555555444 4566677777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 76 EQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 76 eqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
.-.-+.-..+|+...+++=+++..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 113 EDINLAAKQFRTNKSEAIIKLAVNII 138 (155)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77766666777777777777776665
No 75
>PRK03918 chromosome segregation protein; Provisional
Probab=77.77 E-value=39 Score=31.06 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032236 32 RAELLNRIQGLKQDLQNW 49 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~W 49 (144)
..++-.++..|+.++..|
T Consensus 534 ~~~l~~~l~~l~~~l~~~ 551 (880)
T PRK03918 534 LIKLKGEIKSLKKELEKL 551 (880)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 333444444444444444
No 76
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.68 E-value=20 Score=28.57 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=19.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHH
Q 032236 50 RSKLDTQVKIYRDELTDMKKTLS---VEVEQLRSEFQELRSTL 89 (144)
Q Consensus 50 RskLDtQVKtYr~EL~dLK~~Ln---sEVeqLRsEfqeLRttL 89 (144)
...|..+++.+..|+.+|+..++ ...+++...+.+.+...
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~ 164 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEE 164 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544333 44555555555554443
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.28 E-value=29 Score=31.73 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=36.3
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQV-------KIYRDELTD---MKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQV-------KtYr~EL~d---LK~~LnsEVeqLRsEfqeLRttLq 90 (144)
+..++.+|.....++-.+++.+++++...+..++..- ..++.+=|+ -|..|..++.+++.+..+.+..+.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555444433322 222222222 233666666666666666665554
Q ss_pred Hh
Q 032236 91 QQ 92 (144)
Q Consensus 91 qQ 92 (144)
+-
T Consensus 287 ~l 288 (650)
T TIGR03185 287 EL 288 (650)
T ss_pred HH
Confidence 43
No 78
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=76.95 E-value=11 Score=34.80 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=13.7
Q ss_pred hHHhHHHHHHHHHHH--HHHHHHHHhhhH
Q 032236 28 LNESRAELLNRIQGL--KQDLQNWRSKLD 54 (144)
Q Consensus 28 LneSr~ELL~Rvq~L--K~DLq~WRskLD 54 (144)
+.+-+...-.|+..| |.++...+.+++
T Consensus 173 ~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~ 201 (555)
T TIGR03545 173 LKAMQQKWKKRKKDLPNKQDLEEYKKRLE 201 (555)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 333444555555555 555555555443
No 79
>PRK11546 zraP zinc resistance protein; Provisional
Probab=76.94 E-value=24 Score=27.89 Aligned_cols=53 Identities=8% Similarity=0.144 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHhHHHHhhhhhhcc
Q 032236 52 KLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQ------ELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 52 kLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfq------eLRttLqqQ~e~~ta~L~nL~ 104 (144)
+++..++.|..+...||..|.+--..|+..+. +==.+|.+++.++.++|.++.
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444333333321 111234455555555555443
No 80
>PRK09039 hypothetical protein; Validated
Probab=76.33 E-value=46 Score=28.71 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=17.2
Q ss_pred HHHHHHHHHHh-------hhHHHHHHHHHHHHHHHH
Q 032236 41 GLKQDLQNWRS-------KLDTQVKIYRDELTDMKK 69 (144)
Q Consensus 41 ~LK~DLq~WRs-------kLDtQVKtYr~EL~dLK~ 69 (144)
..+..|+.|.. -+..++..+..+|..+|.
T Consensus 95 ~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~ 130 (343)
T PRK09039 95 AERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQ 130 (343)
T ss_pred HHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 34456666633 445566666667766664
No 81
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=75.80 E-value=40 Score=27.13 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=63.4
Q ss_pred CCCCcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 11 SVPKKENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 11 ~~~rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
++....++.-....+....-+-.-+-.|+.+|-. |..+-. .+=..|...|..+.+.|..++..+|.+++++-..=|
T Consensus 92 ~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeL-l~~~g~---naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK 167 (221)
T PF05700_consen 92 PSGKSNDVEAWKEALDNAYAQLEHQRLRLENLEL-LSKYGE---NAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERK 167 (221)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335555555666666666666677777732 222222 234567788999999999999999999999988888
Q ss_pred HhHHHHhhhhhhccc
Q 032236 91 QQQDDVTASLRNLGL 105 (144)
Q Consensus 91 qQ~e~~ta~L~nL~l 105 (144)
..|..+-..|+.|.-
T Consensus 168 ~~Q~~~~~~L~~Le~ 182 (221)
T PF05700_consen 168 RRQEEAGEELRYLEQ 182 (221)
T ss_pred HHHHHhHHHHHHHHH
Confidence 888888888887753
No 82
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=75.67 E-value=25 Score=24.78 Aligned_cols=67 Identities=13% Similarity=0.333 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTD---MKKTLSVEVEQLRSEFQELRSTLQQQQDDVTAS 99 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~d---LK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~ 99 (144)
.+++.+++.+..+++.....++.=...++.=+.. ....+...|+.|......|...+......+...
T Consensus 36 ~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~ 105 (213)
T cd00176 36 EALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEA 105 (213)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777788888877777776554444332221 345556666666666555555555444444433
No 83
>PRK02224 chromosome segregation protein; Provisional
Probab=75.61 E-value=41 Score=31.13 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 032236 72 SVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 72 nsEVeqLRsEfqeLRttLqqQ 92 (144)
..+++.|+.-|.+++..+.+.
T Consensus 714 ~~~~~~L~~~~~~~~~~~~~~ 734 (880)
T PRK02224 714 YDEAEELESMYGDLRAELRQR 734 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666543
No 84
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.45 E-value=12 Score=26.28 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=37.9
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 26 AELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 26 ~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
..|..-=..++..|..|+.++..-+ .-..+|.+-+..|..|.++|+.+-.....+|..=+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLk--------e~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELK--------EKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444566777777777765432 23344556677777888888888777777665433
No 85
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=75.34 E-value=56 Score=30.95 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=13.8
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDL 46 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DL 46 (144)
..++.+...-+.+|+.-...|++.+
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~ 166 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEV 166 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555556665555555544
No 86
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=75.11 E-value=23 Score=24.00 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=50.2
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLD---------------------TQVKIYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLD---------------------tQVKtYr~EL~dLK~~LnsEVeqLRs 80 (144)
..++.+|+.....+-..++.|+..+..-..-++ .-+..+..+|.+-...+..+++.|+.
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~ 83 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEK 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777776665433322 23455666777777777777777777
Q ss_pred HHHHHHHHHHHhHHHHhhh
Q 032236 81 EFQELRSTLQQQQDDVTAS 99 (144)
Q Consensus 81 EfqeLRttLqqQ~e~~ta~ 99 (144)
.+..+...++.-...+...
T Consensus 84 ~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 84 QLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777776666655554443
No 87
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.09 E-value=35 Score=32.16 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=33.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHH-------HHHHHhHHHHhhhhhhccc
Q 032236 48 NWRSKLDTQVKIYRDELTDMK---KTLSVEVEQLRSEFQELR-------STLQQQQDDVTASLRNLGL 105 (144)
Q Consensus 48 ~WRskLDtQVKtYr~EL~dLK---~~LnsEVeqLRsEfqeLR-------ttLqqQ~e~~ta~L~nL~l 105 (144)
+=-.++++-||.+..||.++| +.|+..-.-.+.-+.++. .+...++.++..+|++|=.
T Consensus 382 ~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 334578889999999998877 234444333343333333 3344455555666666543
No 88
>PRK02224 chromosome segregation protein; Provisional
Probab=75.05 E-value=35 Score=31.58 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=20.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHH
Q 032236 46 LQNWRSKLDTQVKIYRDELTDM-KKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 46 Lq~WRskLDtQVKtYr~EL~dL-K~~LnsEVeqLRsEfqeLRtt 88 (144)
+..|+..+..|+...+.+|.+. ...+...+.+++.++.+++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~ 221 (880)
T PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEE 221 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555543 133444455555555555544
No 89
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=74.78 E-value=26 Score=29.54 Aligned_cols=59 Identities=25% Similarity=0.431 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHHHHHHHHhHHHHhh
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV-------------EVEQLRSEFQELRSTLQQQQDDVTA 98 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Lns-------------EVeqLRsEfqeLRttLqqQ~e~~ta 98 (144)
.+.|+..+=..|..||++ +.|..+-..+|+.+++ +.+-|+.|.+...+.|..-+.++.+
T Consensus 112 vI~R~~~ll~~l~~l~~~-----~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~a 183 (216)
T KOG1962|consen 112 VIRRLHTLLRELATLRAN-----EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDA 183 (216)
T ss_pred HHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999997 6666666666655443 4445555555555555444444443
No 90
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=74.51 E-value=27 Score=24.52 Aligned_cols=60 Identities=13% Similarity=0.297 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
.-+.++-.-|..|..=+..|+.-...-. -..|+..+++-|...+.-+...+.+|..|+.-
T Consensus 5 ~v~~ev~~sl~~l~~~~~~~~~~~~~~~--~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 5 VVKDEVQSSLDRLESLYRRWQRLRSDTS--SSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC--CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777778888888887766544 45566667777777777777777777766654
No 91
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.31 E-value=36 Score=31.27 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=8.6
Q ss_pred hhHHhHhHHhHHHHHHH
Q 032236 22 GSKIAELNESRAELLNR 38 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~R 38 (144)
+..|.+|.....++..+
T Consensus 287 ~~~i~~L~~~l~~l~~~ 303 (754)
T TIGR01005 287 EDLIQRLRERQAELRAT 303 (754)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34555555555554443
No 92
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=74.00 E-value=18 Score=31.15 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 62 DELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 62 ~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
.++.+++..|...++.|..+|.+|++.|.
T Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 224 TQVAELKQELKEQHEALTEDFAALKEKLS 252 (276)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Confidence 33444444444444555555555544443
No 93
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=73.98 E-value=12 Score=30.90 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=25.4
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDT 55 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDt 55 (144)
..+...+...+.+..+|.++|..|+.|+..-|+.++.
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~ 79 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQE 79 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344444455666678888888888888887776654
No 94
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.66 E-value=46 Score=27.82 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=19.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 032236 70 TLSVEVEQLRSEFQELRSTLQQQQDDV 96 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRttLqqQ~e~~ 96 (144)
+|..+|+.||.|+...|.....|...+
T Consensus 135 ~l~~e~erL~aeL~~er~~~e~q~~~F 161 (202)
T PF06818_consen 135 SLRREVERLRAELQRERQRREEQRSSF 161 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 467788888888888887777665543
No 95
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=73.43 E-value=19 Score=34.00 Aligned_cols=74 Identities=22% Similarity=0.382 Sum_probs=38.6
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQV-KIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQV-KtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
..+...|..|.+-+.....||+.|...|+.-+..+-..- ..+-..-+..-..|..|+++|+.|...|...|+.|
T Consensus 32 ~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaq 106 (617)
T PF15070_consen 32 QQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQ 106 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777888777777766443222100 01111122333445555555555555555444444
No 96
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.42 E-value=32 Score=34.20 Aligned_cols=28 Identities=4% Similarity=0.192 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 60 YRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 60 Yr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
.+.++.+++...+.++++++.++..++.
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1311)
T TIGR00606 921 DQQEKEELISSKETSNKKAQDKVNDIKE 948 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433333
No 97
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=73.28 E-value=58 Score=27.82 Aligned_cols=86 Identities=26% Similarity=0.433 Sum_probs=53.6
Q ss_pred CcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHH
Q 032236 14 KKENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR-------SEFQELR 86 (144)
Q Consensus 14 rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR-------sEfqeLR 86 (144)
...+..-+...+..|..-..+|+..+..|.++ +..|+.+....+.|+..|+..-. +.=... .+|++=+
T Consensus 41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e----~~~l~~el~~le~e~~~l~~eE~-~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 41 SEEDIEELEEELEKLEQEEEELLQELEELEKE----REELDQELEELEEELEELDEEEE-EYWREYNELQLELIEFQEER 115 (314)
T ss_dssp -HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888889999999999888776 45677777777777777654322 221222 3344445
Q ss_pred HHHHHhHHHHhhhhhhcc
Q 032236 87 STLQQQQDDVTASLRNLG 104 (144)
Q Consensus 87 ttLqqQ~e~~ta~L~nL~ 104 (144)
..++.|.+.+...|..|.
T Consensus 116 ~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555556555555555554
No 98
>PF13166 AAA_13: AAA domain
Probab=73.04 E-value=68 Score=28.87 Aligned_cols=91 Identities=30% Similarity=0.495 Sum_probs=44.4
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHH-------HHHHHH-hhhHHHHHHHHHHHHHHHH----------HhhHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQ-------DLQNWR-SKLDTQVKIYRDELTDMKK----------TLSVEVEQLRS 80 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~-------DLq~WR-skLDtQVKtYr~EL~dLK~----------~LnsEVeqLRs 80 (144)
..+...|.+++....+.=..+.++++ .+..|. .++...+..|..++..++. .+..++..++.
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 445 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEK 445 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666555555555555544 333331 1333444455555555442 23334444445
Q ss_pred HHHHHHHHHH---HhHHHHhhhhhhcccccCC
Q 032236 81 EFQELRSTLQ---QQQDDVTASLRNLGLQDFS 109 (144)
Q Consensus 81 EfqeLRttLq---qQ~e~~ta~L~nL~lqd~~ 109 (144)
+..+|+..+. .-.+.+..-|+.+|.....
T Consensus 446 ~i~~l~~~~~~~~~~~~~iN~~L~~~g~~~~~ 477 (712)
T PF13166_consen 446 EIKELEAQLKNTEPAADRINEELKRLGFSNFS 477 (712)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCCCeE
Confidence 5555554433 2234556667888755433
No 99
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=73.02 E-value=11 Score=33.08 Aligned_cols=61 Identities=16% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 42 LKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 42 LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
.+.|-.+||+.|+ |.+.|+..+...-......++.|..++..--..|..--.-+..+|..|
T Consensus 211 ~~~d~kDWR~hle-qm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l 271 (359)
T PF10498_consen 211 IRADAKDWRSHLE-QMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPL 271 (359)
T ss_pred ccCCcchHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 100
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.90 E-value=49 Score=31.66 Aligned_cols=30 Identities=20% Similarity=0.560 Sum_probs=19.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 63 ELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 63 EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
.|+.--+....|++.++..++.|+.+|++-
T Consensus 629 ~LS~AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 629 VLSEAEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666667777777777776666553
No 101
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.44 E-value=50 Score=26.68 Aligned_cols=73 Identities=18% Similarity=0.374 Sum_probs=44.0
Q ss_pred CccchhhHHhHhHHhH---HHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHH----------HhhHHHHHHHH
Q 032236 17 NITPVGSKIAELNESR---AELLNRIQGLKQDLQNW---RSKLDTQVKIYRDELTDMKK----------TLSVEVEQLRS 80 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr---~ELL~Rvq~LK~DLq~W---RskLDtQVKtYr~EL~dLK~----------~LnsEVeqLRs 80 (144)
|+.++.+||.+|=+-+ ..++....++++.+..= ..+++...+.....|..|+. .-.+||.+|++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888875544 46666666676665543 34555655555555555554 44566666666
Q ss_pred HHHHHHHHH
Q 032236 81 EFQELRSTL 89 (144)
Q Consensus 81 EfqeLRttL 89 (144)
+...|...+
T Consensus 167 ~~~~l~~~~ 175 (190)
T PF05266_consen 167 EAEALKEEI 175 (190)
T ss_pred HHHHHHHHH
Confidence 665544433
No 102
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=72.41 E-value=26 Score=23.33 Aligned_cols=55 Identities=25% Similarity=0.451 Sum_probs=36.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTLSVE----------VEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~LnsE----------VeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
|+..++.+|..+...++.++..+.+.|+.+ |+.=|..+.++.. +++.+...|..|
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~----~~~~l~~~l~~L 65 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEE----ELEKLEEALEQL 65 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHH----HHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 677888899999999999999999999864 4555554444433 333444444444
No 103
>PRK09039 hypothetical protein; Validated
Probab=72.37 E-value=47 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=18.1
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhh
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskL 53 (144)
.++.++..-=++..-.|+.|+.++..+|..|
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344444444455666777777777777553
No 104
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.68 E-value=16 Score=23.58 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 032236 74 EVEQLRSEFQEL 85 (144)
Q Consensus 74 EVeqLRsEfqeL 85 (144)
|.+.|+.+.+.|
T Consensus 39 e~~~L~~ei~~l 50 (80)
T PF04977_consen 39 ENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHh
Confidence 333444444444
No 105
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=70.99 E-value=89 Score=29.01 Aligned_cols=34 Identities=9% Similarity=0.242 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 71 LSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 71 LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
|.+.++..|.-+.+-+..|++-.+.++..|.||-
T Consensus 86 l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA 119 (475)
T PRK10361 86 VTTRMEAAQQHADDKIRQMINSEQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555566666666666666664
No 106
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=70.49 E-value=52 Score=28.28 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=41.5
Q ss_pred cCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 15 KENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 15 k~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
+..+.-+.....-|++.-.+|..-|+..-..-.-=-..|=.|-..|+.=++-|...-++.++++++|+++...
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~ee 77 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEE 77 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 3344445556666677777777777766554444444444455555555555555555555555555555543
No 107
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=70.35 E-value=77 Score=30.04 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=24.3
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhh
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskL 53 (144)
...+..|.....++-.||..|..|+..+..+.
T Consensus 205 ~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 205 KEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777888888888888888887776
No 108
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.34 E-value=19 Score=33.55 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=11.6
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQ 47 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq 47 (144)
+++.+-+....||=.+|..||++++
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555544443
No 109
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=70.15 E-value=78 Score=28.27 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=25.5
Q ss_pred HHhhhHHHHHHHHHH-HHHHHHHhh--------HHHHHHHHHHHHHHHHHHHhHH
Q 032236 49 WRSKLDTQVKIYRDE-LTDMKKTLS--------VEVEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 49 WRskLDtQVKtYr~E-L~dLK~~Ln--------sEVeqLRsEfqeLRttLqqQ~e 94 (144)
+..++...++.-+.| +..+...+. .+.++++.+|+..+..|++..+
T Consensus 274 ~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~ 328 (582)
T PF09731_consen 274 EEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYE 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555 555555555 3334666777666666655543
No 110
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=69.35 E-value=18 Score=31.48 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=11.3
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHh
Q 032236 27 ELNESRAELLNRIQGLKQDLQNWRS 51 (144)
Q Consensus 27 ELneSr~ELL~Rvq~LK~DLq~WRs 51 (144)
.++.....+-.+|..++..+++.+.
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~ 193 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQA 193 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555544433
No 111
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=69.34 E-value=55 Score=27.10 Aligned_cols=71 Identities=23% Similarity=0.326 Sum_probs=44.5
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHhHH
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELR-STLQQQQD 94 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLR-ttLqqQ~e 94 (144)
.|.+...-...+-...+.|......=...|..+.++|...+..|+..|..+-.+++.+...+- ..++.|.+
T Consensus 205 ~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~ 276 (297)
T PF02841_consen 205 EIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQEE 276 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444445668888999999999999888888888887776663 34444444
No 112
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.29 E-value=75 Score=27.43 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=25.4
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHh
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRS 51 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRs 51 (144)
-..+...++-+++-..+|..|.+.|+.++..=|.
T Consensus 160 ~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 160 YKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888877543
No 113
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=69.25 E-value=35 Score=23.65 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=13.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKK 69 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~ 69 (144)
-|++==..+..++.+|..++.-|..
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333455666666666655543
No 114
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=68.65 E-value=67 Score=30.68 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=45.4
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSK---LDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRsk---LDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
.....+++.|..-..-.-.+|+.|+..|+.|+.+ ++.++.....|+.+.....+.-+.+|.+....+....
T Consensus 223 ~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 223 ADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred hhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666665666666677777777777765 4667777777777776666666666665555555444
No 115
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=68.52 E-value=62 Score=28.56 Aligned_cols=84 Identities=24% Similarity=0.398 Sum_probs=49.1
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HhHHHHhh
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ---QQQDDVTA 98 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq---qQ~e~~ta 98 (144)
-.+|-+|...+.+|..+++.|+.+ |..+-.+++.-...-.+....|-.++..|+.++.+|...++ .++...-.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~e----rN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAK----RNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999988877654 45555555442211111123444566666666666655543 33444455
Q ss_pred hhhhcccccCC
Q 032236 99 SLRNLGLQDFS 109 (144)
Q Consensus 99 ~L~nL~lqd~~ 109 (144)
.|-|+=-.+++
T Consensus 105 ~lPN~~~~~vP 115 (418)
T TIGR00414 105 SIPNIPHESVP 115 (418)
T ss_pred hCCCCCCccCC
Confidence 56666566665
No 116
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=68.35 E-value=38 Score=23.69 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=38.0
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKK------TLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~------~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
.+-..|-+|...+.+|...++.|+.. -+....+++.+++ .|-.|+..++.++.++...+..=.
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~-----------rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAE-----------RNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777776666666665543 2334445555554 366666666666666666555433
Q ss_pred HHHh
Q 032236 94 DDVT 97 (144)
Q Consensus 94 e~~t 97 (144)
+.+.
T Consensus 95 ~~l~ 98 (108)
T PF02403_consen 95 EELN 98 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 117
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.22 E-value=50 Score=25.02 Aligned_cols=57 Identities=32% Similarity=0.469 Sum_probs=30.6
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLS-----VEVEQLRSEFQELRSTL 89 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln-----sEVeqLRsEfqeLRttL 89 (144)
...+.+++..-.+|-..+..|+. .++..+.||..|...+- ..|.+|+.+...|...|
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~-----------~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKK-----------EVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666555555555555544 45666667777776663 33444444444444333
No 118
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=68.19 E-value=32 Score=26.95 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEV 75 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEV 75 (144)
.++-.||+.|++++. .||.+++.+-..|.+.++.|++=+
T Consensus 25 q~~~~~I~~L~~e~~----~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 25 QENQARIQQLRAEIE----ELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666654 577777777777777777777666
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=68.14 E-value=48 Score=28.11 Aligned_cols=63 Identities=27% Similarity=0.476 Sum_probs=35.9
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL 85 (144)
+-...++..|++.=.+|+.++.+|....-.-+..+-.+ +..+.+++..+..+|..++.+.+.+
T Consensus 99 ~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~----e~~~~e~~~~~e~e~~~i~e~~~~~ 161 (239)
T COG1579 99 QIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL----EKNLAEAEARLEEEVAEIREEGQEL 161 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666555555444333 3455666666666666666555544
No 120
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=68.04 E-value=25 Score=26.48 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e 94 (144)
-|.+|..|+.++..=-. .|+.++..++..+..++..|..+.+.|-..|+.=-+
T Consensus 8 al~ki~~l~~~~~~i~~-------~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 8 ALRKIAELQREIARIEA-------EANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555443322 334555555666666666666666666555554333
No 121
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.97 E-value=43 Score=24.93 Aligned_cols=44 Identities=30% Similarity=0.422 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHhHH
Q 032236 51 SKLDTQVKIYRDELTDMKKTLSVE---VEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 51 skLDtQVKtYr~EL~dLK~~LnsE---VeqLRsEfqeLRttLqqQ~e 94 (144)
..|..|+..--.+|+.||..+..= =..||-|-+.||..|.+...
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556666667777777665543 34688888888888776443
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.58 E-value=58 Score=31.70 Aligned_cols=71 Identities=21% Similarity=0.397 Sum_probs=44.6
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
+.++..+++.|.+--.+|-..|..||..+..-+++|+ ..+.++. .+...+.|++++..++..|+..|..+.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~----~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELE----RFRREVR-DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777777776655554444 4444444 455566677777777777776666543
No 123
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.25 E-value=1.8 Score=39.95 Aligned_cols=72 Identities=28% Similarity=0.471 Sum_probs=0.0
Q ss_pred CcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHH
Q 032236 14 KKENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEV---EQLRSEFQELR 86 (144)
Q Consensus 14 rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEV---eqLRsEfqeLR 86 (144)
+..++.-+..+|++|.+--..|+.++-.|-.+|...+. +..|+.+|+.++.+|+..++.+- +.|.-++..|+
T Consensus 323 KLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~-~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ 397 (713)
T PF05622_consen 323 KLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARA-LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLE 397 (713)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778899999999999999999999999998764 77899999999999998887653 33444444443
No 124
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=67.02 E-value=86 Score=27.83 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=49.8
Q ss_pred hhhHHhHhHHhHHHHHHHHHH---------------HHHHHHHHHhhhH----HHHHHHHHHHHHHHH---HhhHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQG---------------LKQDLQNWRSKLD----TQVKIYRDELTDMKK---TLSVEVEQL 78 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~---------------LK~DLq~WRskLD----tQVKtYr~EL~dLK~---~LnsEVeqL 78 (144)
+-.+|..|+..+..|...+.. |..+--.--..|. .+|...+..|..|.+ ++.+++++|
T Consensus 82 LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~L 161 (310)
T PF09755_consen 82 LLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERL 161 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 446677777777776544332 2222112222222 235566666777764 778889999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhh
Q 032236 79 RSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 79 RsEfqeLRttLqqQ~e~~ta~L 100 (144)
|.|--+|-++|.+.++.+-..|
T Consensus 162 r~EKVdlEn~LE~EQE~lvN~L 183 (310)
T PF09755_consen 162 RREKVDLENTLEQEQEALVNRL 183 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999888888887765544
No 125
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.85 E-value=90 Score=31.18 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 032236 56 QVKIYRDELTDMKKT---LSVEVEQLRSEFQELRSTLQQQQDDVTASLRN 102 (144)
Q Consensus 56 QVKtYr~EL~dLK~~---LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~n 102 (144)
++..++.++.+++.. |..+++.+.+++.+++.........+...+..
T Consensus 896 el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1311)
T TIGR00606 896 EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVND 945 (1311)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444432 34566666677766666665555554444433
No 126
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=66.69 E-value=76 Score=26.53 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 032236 74 EVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 74 EVeqLRsEfqeLRttLqqQ~e~ 95 (144)
+|..|+.+...|+..|+++...
T Consensus 243 ~v~~l~~~i~~l~~~i~~e~~~ 264 (362)
T TIGR01010 243 QVPSLQARIKSLRKQIDEQRNQ 264 (362)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 127
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=66.43 E-value=37 Score=29.98 Aligned_cols=73 Identities=15% Similarity=0.384 Sum_probs=55.2
Q ss_pred CCCCCCCcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 8 STPSVPKKENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 8 ~~p~~~rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
.++..+....+..-+..|..|..... .||.+| +.|+.++..|..-+..||-+|+..|+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~i~~Lp~~~~---~rv~aL---------------~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~ 76 (337)
T PTZ00007 15 ESDIIEGLDSIELDDEKLSHLTDEQR---ETLKKL---------------QLLQKEFDDLEVEYNAELRKLRSKYEDLYN 76 (337)
T ss_pred cchhhhhhhhcccccchhhhCCHHHH---HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566667777877888888888763 355555 346778888888899999999999999888
Q ss_pred HHHHhHHHHhh
Q 032236 88 TLQQQQDDVTA 98 (144)
Q Consensus 88 tLqqQ~e~~ta 98 (144)
-|-+++..+-+
T Consensus 77 Ply~kR~eII~ 87 (337)
T PTZ00007 77 PIYDKRKEALV 87 (337)
T ss_pred HHHHHHHHHHc
Confidence 77777766544
No 128
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=66.42 E-value=40 Score=23.63 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=20.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 69 KTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 69 ~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
.-|..||+.|+.|+++++..|.+...+
T Consensus 46 ieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 46 IELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888765543
No 129
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=66.41 E-value=25 Score=24.25 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 032236 31 SRAELLNRIQGLKQDLQNWRS 51 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRs 51 (144)
|-.||..+|..||++|-+-|.
T Consensus 13 s~~eL~~~l~elk~eLf~LR~ 33 (69)
T PRK14549 13 SPEEREEKLEELKLELLKERA 33 (69)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999998883
No 130
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=66.18 E-value=49 Score=27.82 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 032236 71 LSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 71 LnsEVeqLRsEfqeLRttLq 90 (144)
+|.++++|..+...|..+|+
T Consensus 46 ~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 46 ANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 45566777777777777776
No 131
>PRK10780 periplasmic chaperone; Provisional
Probab=65.97 E-value=50 Score=25.16 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032236 41 GLKQDLQNWRSKLDTQVKIYRDELTDM 67 (144)
Q Consensus 41 ~LK~DLq~WRskLDtQVKtYr~EL~dL 67 (144)
.|+++...|+..|+...+.|+.+...+
T Consensus 47 ~le~~~~~~q~el~~~~~elq~~~~~~ 73 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQAKMQKL 73 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444
No 132
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=65.89 E-value=41 Score=23.15 Aligned_cols=71 Identities=15% Similarity=0.384 Sum_probs=44.5
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHhHH
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRD-ELTDMKKTLSV-----EVEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~-EL~dLK~~Lns-----EVeqLRsEfqeLRttLqqQ~e 94 (144)
.|..|.....+-..+|..|+.-...|+.-++..+.-++. -........++ -++++|..+..|+...+..+.
T Consensus 57 ~L~~l~~~~p~q~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~l~ 133 (138)
T PF05227_consen 57 QLRQLVQDNPEQQERLDQLEELIDQWRELLEPQIALRKSGGMEAARALVNSGEGKQLMDQIRQLLEQIQAEEQRLLK 133 (138)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444345577888999999999999999999988877 22222333322 355666666666666655544
No 133
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=65.64 E-value=31 Score=26.91 Aligned_cols=70 Identities=26% Similarity=0.415 Sum_probs=18.5
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKL---DTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskL---DtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e 94 (144)
+..-+.++.-+++++-.||-.+-..|+.=+..+ ...+..++.++.. |..++..|..++.++...++--++
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~----L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQ----LEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777889999999988877766544433 3344444444433 444555666666666555544443
No 134
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=65.36 E-value=82 Score=29.37 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 032236 56 QVKIYRDELTDMKK 69 (144)
Q Consensus 56 QVKtYr~EL~dLK~ 69 (144)
.++.|+.-+-.|++
T Consensus 192 ~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 192 DLEEYKKRLEAIKK 205 (555)
T ss_pred hHHHHHHHHHHHHh
Confidence 45566665555544
No 135
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=65.10 E-value=36 Score=22.23 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskL 53 (144)
|..||...+..||++|-+-|.+-
T Consensus 6 s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 6 SKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999998888543
No 136
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=65.00 E-value=49 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.329 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 032236 62 DELTDMKKTLSVEVEQLRSEF 82 (144)
Q Consensus 62 ~EL~dLK~~LnsEVeqLRsEf 82 (144)
.+...+-+.++..|..|+...
T Consensus 51 ~~~~~~~~~ik~~lk~l~~~~ 71 (151)
T cd00179 51 QEIKKLAKEIKGKLKELEESN 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 137
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=64.61 E-value=2.2 Score=38.29 Aligned_cols=78 Identities=24% Similarity=0.464 Sum_probs=0.0
Q ss_pred ccchhhHHhHhHHhH---HHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESR---AELLNR----IQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 18 ~~pi~~ki~ELneSr---~ELL~R----vq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
+.-|...|+-|..|= +.||.= |..|.++|+-||. ..+.|..+|..-+..-..-|+-|+.++.+|-..|.
T Consensus 437 i~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~----e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~ 512 (539)
T PF10243_consen 437 IEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRS----EYRQHAEALQEEQSITDEALEPLKAQLAELEQQIK 512 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 344444444444443 233333 4579999999997 45667777777777778889999999999999999
Q ss_pred HhHHHHhhh
Q 032236 91 QQQDDVTAS 99 (144)
Q Consensus 91 qQ~e~~ta~ 99 (144)
.|++.+.+.
T Consensus 513 ~~~~~i~~~ 521 (539)
T PF10243_consen 513 DQQDKICAV 521 (539)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 998875543
No 138
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=64.60 E-value=43 Score=22.90 Aligned_cols=20 Identities=10% Similarity=0.498 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 032236 34 ELLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskL 53 (144)
+.+..|+.++.++..-+.++
T Consensus 5 ~F~~~v~~I~~~I~~i~~~v 24 (117)
T smart00503 5 EFFEKVEEIRANIQKISQNV 24 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665555444
No 139
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.52 E-value=59 Score=28.03 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=8.0
Q ss_pred HHHHHHHHHHH
Q 032236 34 ELLNRIQGLKQ 44 (144)
Q Consensus 34 ELL~Rvq~LK~ 44 (144)
.|+.|++.|+.
T Consensus 316 ~lv~RL~tL~~ 326 (388)
T PF04912_consen 316 SLVERLKTLKS 326 (388)
T ss_pred HHHHHHHHHHH
Confidence 56788887764
No 140
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=64.46 E-value=95 Score=26.87 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCCCCCCcCCccchhhHHhHhHHhHHHH----HHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHhh
Q 032236 8 STPSVPKKENITPVGSKIAELNESRAEL----LNRIQGLKQDLQNWRSKLD-----TQVKIYRDELTDMKKTLS 72 (144)
Q Consensus 8 ~~p~~~rk~~~~pi~~ki~ELneSr~EL----L~Rvq~LK~DLq~WRskLD-----tQVKtYr~EL~dLK~~Ln 72 (144)
++|++...--+.........|.+-...| ..++..-+..|+.++.+|. ..+..++..|..+...|+
T Consensus 249 ~TPtaaae~~~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~ 322 (438)
T PRK00286 249 PTPTAAAELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQ 322 (438)
T ss_pred CChHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455444434444444455555544444 2334444445555444442 334445555555444443
No 141
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.38 E-value=47 Score=30.97 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=68.0
Q ss_pred CcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032236 14 KKENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSK-----------LDTQVKIYRDELTDMKKTLSVEVEQLRSEF 82 (144)
Q Consensus 14 rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRsk-----------LDtQVKtYr~EL~dLK~~LnsEVeqLRsEf 82 (144)
..+.+..+.+.|+||+.|--++-.+=+.+-.+-...|-. |--+|-+-....--||+..++-.+-|+.-+
T Consensus 171 d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~l 250 (446)
T KOG4438|consen 171 DEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEAL 250 (446)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345788899999999999999988888888877776643 223566666555558888888888999999
Q ss_pred HHHHHHHHHhH---HHHhhhhhhcc
Q 032236 83 QELRSTLQQQQ---DDVTASLRNLG 104 (144)
Q Consensus 83 qeLRttLqqQ~---e~~ta~L~nL~ 104 (144)
.+|+.+|++.+ ..++.+-+.|+
T Consensus 251 eemk~~l~k~k~~~~~l~~K~~iL~ 275 (446)
T KOG4438|consen 251 EEMKDLLQKEKSAMVELQEKAKILE 275 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988754 44555555554
No 142
>PRK04098 sec-independent translocase; Provisional
Probab=64.34 E-value=49 Score=26.71 Aligned_cols=50 Identities=20% Similarity=0.464 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 38 RIQGLKQDLQNWRSKLDTQVKIYRD-----ELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 38 Rvq~LK~DLq~WRskLDtQVKtYr~-----EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
++..||++++.|...|+.-+..+|. ||.+++++.+.+...++..+.+++.
T Consensus 55 ~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~~~~~~~~~~~~~~~~~~~~ 109 (158)
T PRK04098 55 NIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITAENEIKSIQDLLQDYKK 109 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhcchhHHHHHhhhhh
Confidence 6777888888887777777776666 5555555555554444444444433
No 143
>PRK14147 heat shock protein GrpE; Provisional
Probab=64.34 E-value=71 Score=25.40 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=57.9
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE--------LTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E--------L~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
..++..+|.+|.+--.+|-+|+..+.-|++|.|-++.-.+...+.- |...-..|..=+.....+...+..-+
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~l~~Gv 99 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGTEPSPLRDGL 99 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccchHHHHHHHH
Confidence 3457788999999999999999999999999999988777655432 22222222221111222333444444
Q ss_pred HHhHHHHhhhhhhcccccC
Q 032236 90 QQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 90 qqQ~e~~ta~L~nL~lqd~ 108 (144)
+-=...+...|.++|+.-.
T Consensus 100 ~mi~k~l~~~L~~~Gv~~i 118 (172)
T PRK14147 100 ELTYKQLLKVAADNGLTLL 118 (172)
T ss_pred HHHHHHHHHHHHHCCCEEe
Confidence 4344446678889998863
No 144
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=64.28 E-value=18 Score=25.57 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 61 RDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 61 r~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
...|+.+=++|--|+.+++-++++|.+.+++-..+
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s 46 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPS 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45677888888888888888888887777764443
No 145
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=64.25 E-value=39 Score=22.28 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=13.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 65 TDMKKTLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 65 ~dLK~~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
......+..+++.++.++...|..+.+..
T Consensus 58 ~~~i~~~~~~~~~~~~~~~~~r~~l~~a~ 86 (123)
T PF02050_consen 58 EQAIQQQQQELERLEQEVEQAREELQEAR 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555444443
No 146
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=63.83 E-value=81 Score=25.82 Aligned_cols=27 Identities=7% Similarity=0.259 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032236 71 LSVEVEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 71 LnsEVeqLRsEfqeLRttLqqQ~e~~t 97 (144)
.+..++..+.+++.+++++...+..+.
T Consensus 187 ~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 187 KRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344455555555555555555555544
No 147
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=63.76 E-value=55 Score=23.87 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 032236 80 SEFQELRSTLQQ 91 (144)
Q Consensus 80 sEfqeLRttLqq 91 (144)
.+|+.+...|++
T Consensus 83 ~~l~~~~~~l~~ 94 (158)
T PF03938_consen 83 QELQQKEQELQQ 94 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 148
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.25 E-value=82 Score=25.74 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=11.8
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQ 47 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq 47 (144)
..++..|......|..++..|+..+.
T Consensus 80 ~~~l~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 80 EADAAELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555444444444444443333
No 149
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=62.82 E-value=50 Score=23.12 Aligned_cols=67 Identities=21% Similarity=0.438 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHH--------HHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 032236 37 NRIQGLKQDLQNWRSKLDTQV--------KIYRDELTDMKK--------TLSVEVEQLRSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLDtQV--------KtYr~EL~dLK~--------~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L 100 (144)
+....+.+-|+.||.....++ ......+.++=. ..+..+++.+.+++..+..+..+.+.....+
T Consensus 32 GS~~ti~~~l~~w~~~~~~~~~~~~~~lP~~l~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (120)
T PF11740_consen 32 GSMSTISKHLKEWREEREAQVSEAAPDLPEALQDALAELMARLWEAAQEEAEEELEAARAELEQERAAAEAELAEAEAQA 111 (120)
T ss_pred CCHHHHHHHHHHHHHhhhccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888999888888 455444444333 3334444555555555555555555544444
Q ss_pred hhc
Q 032236 101 RNL 103 (144)
Q Consensus 101 ~nL 103 (144)
..|
T Consensus 112 ~~l 114 (120)
T PF11740_consen 112 EEL 114 (120)
T ss_pred HHH
Confidence 433
No 150
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=62.44 E-value=96 Score=29.55 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=59.4
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTA 98 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta 98 (144)
..+.++-+-|-+|...|..-|..|---+-.-+.+||.|-++...-|+++++-.-+..-..-..|-..+..+...+..+..
T Consensus 340 d~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~e 419 (531)
T PF15450_consen 340 DLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQE 419 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666655555544444445569999999999999999877777766667777777777777666666
Q ss_pred hhhhcccc
Q 032236 99 SLRNLGLQ 106 (144)
Q Consensus 99 ~L~nL~lq 106 (144)
.+-.|..|
T Consensus 420 KVd~Lpqq 427 (531)
T PF15450_consen 420 KVDSLPQQ 427 (531)
T ss_pred HHHhhhHH
Confidence 66655443
No 151
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=62.17 E-value=20 Score=28.40 Aligned_cols=63 Identities=29% Similarity=0.339 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh----HHHHHHHHH-------HHHHHHHHHHhHHHHhhhhhhcc
Q 032236 42 LKQDLQNWRSKLDTQVKIYRDELTDMKKTLS----VEVEQLRSE-------FQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 42 LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln----sEVeqLRsE-------fqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
+-.-|++|+++|+.+||.-..++..+-+.++ .=++-||.. -.+|+..||.-+.++.+...+|+
T Consensus 39 ~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~ 112 (155)
T PF07464_consen 39 VAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLA 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777777774444443333333 333333322 23455555555555544444443
No 152
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=62.07 E-value=38 Score=23.32 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=19.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 69 KTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 69 ~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
.+||+.|.||.+++..||..++.=++.
T Consensus 13 q~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 13 QTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888877665553
No 153
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.96 E-value=1.1e+02 Score=26.69 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=55.6
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc-
Q 032236 26 AELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG- 104 (144)
Q Consensus 26 ~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~- 104 (144)
+-|.+...++..+-. |+++=..-+..+...+|..|.||.-|..- .+-|+.|+-+.|.+|.++.+.+.-+..+-+
T Consensus 65 ~~l~etene~~~~ne-L~~ek~~~q~~ieqeik~~q~elEvl~~n----~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~k 139 (246)
T KOG4657|consen 65 ADLRETENELVKVNE-LKTEKEARQMGIEQEIKATQSELEVLRRN----LQLLKEEKDDSKEIISQKRQALSKAKENAGK 139 (246)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666655555 88888888888999999988888776654 356778888899999988875544433332
Q ss_pred -cccCC
Q 032236 105 -LQDFS 109 (144)
Q Consensus 105 -lqd~~ 109 (144)
.||.+
T Consensus 140 RkQdsa 145 (246)
T KOG4657|consen 140 RKQDSA 145 (246)
T ss_pred HHhhhh
Confidence 66643
No 154
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=61.86 E-value=1.3e+02 Score=29.35 Aligned_cols=76 Identities=24% Similarity=0.294 Sum_probs=46.6
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQ------VKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQ------VKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
.|+.-=..-+.|--.--..|.+||..|..||..-|..+.+. +.+-..||..-...|..+.-+||.|+.|+|.+=
T Consensus 13 ~g~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE 92 (717)
T PF09730_consen 13 DGEEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFRE 92 (717)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555556789999999999998877766542 223334444444555666666676666666543
Q ss_pred HH
Q 032236 90 QQ 91 (144)
Q Consensus 90 qq 91 (144)
..
T Consensus 93 ~r 94 (717)
T PF09730_consen 93 AR 94 (717)
T ss_pred HH
Confidence 33
No 155
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.84 E-value=47 Score=23.52 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=13.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 67 MKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 67 LK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
--+.|+..++.+..+|.+++..|++
T Consensus 78 ~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 78 RIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555666665555543
No 156
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=61.60 E-value=72 Score=26.65 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=19.8
Q ss_pred hHhHHhHHHHHHHH---HHHHHHHHHHHhhhH
Q 032236 26 AELNESRAELLNRI---QGLKQDLQNWRSKLD 54 (144)
Q Consensus 26 ~ELneSr~ELL~Rv---q~LK~DLq~WRskLD 54 (144)
.-|.+|+.|+-.|. =+||..|-.=|++|+
T Consensus 17 qQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~ 48 (202)
T PF06818_consen 17 QQLKESQAEVNQKDSEIVSLRAQLRELRAELR 48 (202)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35778888887664 467777777666654
No 157
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=61.26 E-value=1.1e+02 Score=30.17 Aligned_cols=53 Identities=23% Similarity=0.472 Sum_probs=28.2
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHh
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDT---QVKIYRDELTDMKKTL 71 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDt---QVKtYr~EL~dLK~~L 71 (144)
..+...|..|.+.+..+-.|+..++.++..=+.++++ ++..-+.++..|...+
T Consensus 400 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (1163)
T COG1196 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666655555543 3444444444443333
No 158
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=61.12 E-value=74 Score=24.48 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=11.1
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHH
Q 032236 27 ELNESRAELLNRIQGLKQDLQNW 49 (144)
Q Consensus 27 ELneSr~ELL~Rvq~LK~DLq~W 49 (144)
.|..||+++=+|+.+|-..|.+-
T Consensus 6 ~l~as~~el~n~La~Le~slE~~ 28 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDE 28 (107)
T ss_dssp --------HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 56677888888888877777654
No 159
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=61.04 E-value=70 Score=24.20 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 032236 57 VKIYRDELTDMK 68 (144)
Q Consensus 57 VKtYr~EL~dLK 68 (144)
++.+..|+.++.
T Consensus 139 ~~~~~~e~~~l~ 150 (191)
T PF04156_consen 139 IKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 160
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=60.96 E-value=66 Score=29.59 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=52.8
Q ss_pred hhHHhHhHHhH-HHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh----------HHHHHHH-------H
Q 032236 22 GSKIAELNESR-AELLNRIQG---LKQDLQNWRSKLDTQVKIYRDELTDMKKTLS----------VEVEQLR-------S 80 (144)
Q Consensus 22 ~~ki~ELneSr-~ELL~Rvq~---LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln----------sEVeqLR-------s 80 (144)
.+-|.++.+|. .|+=.|++. +--.|-|=.++|=-||-+.+++|.++-.+|| +||+.++ -
T Consensus 110 EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~ 189 (405)
T KOG2010|consen 110 EASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQH 189 (405)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888 888888875 4557888899999999999999999998875 4555443 3
Q ss_pred HHHHHHHHHHHh
Q 032236 81 EFQELRSTLQQQ 92 (144)
Q Consensus 81 EfqeLRttLqqQ 92 (144)
-|++|+..|+|.
T Consensus 190 ~~~elKe~l~QR 201 (405)
T KOG2010|consen 190 KMEELKEGLRQR 201 (405)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 161
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.57 E-value=1.4e+02 Score=27.53 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 032236 57 VKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 57 VKtYr~EL~dLK~~LnsEVeqLR 79 (144)
|..-+.+|.+|+..+..|+.++.
T Consensus 318 v~~l~~qi~~l~~~i~~e~~~~~ 340 (754)
T TIGR01005 318 VVAAKSSLADLDAQIRSELQKIT 340 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555443
No 162
>PRK14161 heat shock protein GrpE; Provisional
Probab=60.39 E-value=88 Score=25.13 Aligned_cols=92 Identities=13% Similarity=0.255 Sum_probs=56.3
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE------------LTDMKKTLSVEVEQLRSEFQE 84 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E------------L~dLK~~LnsEVeqLRsEfqe 84 (144)
.+.....+|.+|.+--.+|-.|+..+.-|+.|.|-+...+....+.- +-+|..+|++--..=-..+..
T Consensus 20 ~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~ 99 (178)
T PRK14161 20 IVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPANSDVEVTN 99 (178)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccccchhHHH
Confidence 34556778888888888999999999999999998888776655432 223444443210000011233
Q ss_pred HHHHHHHhHHHHhhhhhhcccccC
Q 032236 85 LRSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 85 LRttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
+..-++-=...+-..|...|+.-.
T Consensus 100 ~~~Gv~mi~k~l~~vL~~~Gv~~I 123 (178)
T PRK14161 100 IIAGVQMTKDELDKVFHKHHIEEI 123 (178)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEe
Confidence 444333333445667888888764
No 163
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=60.19 E-value=1.3e+02 Score=27.09 Aligned_cols=64 Identities=20% Similarity=0.401 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHhHHHHhh
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVE------VEQLRSEFQELRSTLQQQQDDVTA 98 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsE------VeqLRsEfqeLRttLqqQ~e~~ta 98 (144)
|-..|+.|+-++++=...+..++..++..+..+...+..+ +..+..||.-++..+..+...++.
T Consensus 293 l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~ 362 (511)
T PF09787_consen 293 LERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQL 362 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 3344555566666666666666666666665555555333 333455555555544444443333
No 164
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=60.01 E-value=1.1e+02 Score=26.18 Aligned_cols=64 Identities=30% Similarity=0.442 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
+|.+.=.=++.+|-++..-|+.|.+ .-+.|..- |.+|.|.|+.|+..+|+.|..+...+++..+
T Consensus 88 tkaqq~~v~~QQ~~~f~kiRsel~S---~e~sEF~~----lr~e~EklkndlEk~ks~lr~ei~~~~a~~r 151 (220)
T KOG3156|consen 88 TKAQQEKVSYQQKVDFAKIRSELVS---IERSEFAN----LRAENEKLKNDLEKLKSSLRHEISKTTAEFR 151 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcchhce
Confidence 3444444456667777777766643 33445544 4579999999999999999999988776654
No 165
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=59.91 E-value=56 Score=25.55 Aligned_cols=49 Identities=31% Similarity=0.420 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHH
Q 032236 43 KQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVE---QLRSEFQELRSTLQQ 91 (144)
Q Consensus 43 K~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVe---qLRsEfqeLRttLqq 91 (144)
|+++=+=-++|..|+-+--.|||+||+-|-+=|| .||=|-.-||.+|-.
T Consensus 3 KkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 3 KKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 5566667788899999999999999998876665 466666666665543
No 166
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.65 E-value=53 Score=28.99 Aligned_cols=66 Identities=26% Similarity=0.411 Sum_probs=38.2
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDM---KKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dL---K~~LnsEVeqLRsEfqeLRt 87 (144)
..-+..++.|+..-+.+|+.++..|.-++.--+.+| |..+.|.+-| .+.|--||..|+.-|.+|-.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl----k~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERL----KRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 344556666777777777777766666555444433 4444444433 34445577777776666644
No 167
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=59.42 E-value=51 Score=22.12 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
|..||..++..||++|.+-|...-+ +.+.+ .+++-.+|.++.-+.|.|.+.
T Consensus 10 s~~eL~~~l~~lkkeL~~lR~~~~~---------~~~~n--~~~i~~~rk~IARi~Tvl~er 60 (66)
T PRK00306 10 SVEELNEKLLELKKELFNLRFQKAT---------GQLEN--THRLREVRRDIARIKTVLRER 60 (66)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---------CCCcC--cHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999888854321 11111 234555666666666665554
No 168
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=59.24 E-value=97 Score=28.67 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=48.8
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----------------------------------H
Q 032236 25 IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK-----------------------------------K 69 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK-----------------------------------~ 69 (144)
+.+|.+....+-..|.+|+..+.+-+..|+.|=..++. +.+.. .
T Consensus 73 ~e~~d~vk~h~d~~i~~l~~~i~~~k~~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (426)
T smart00806 73 VEELDEVKKHIDDEIDTLQNELDEVKQALESQREAIQR-LKERQQNSAANIARPAASPSPVLASSSSAISLANNPDKLNK 151 (426)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHhhhcccCcccccCCCCcccccccccccccCCCcccch
Confidence 44556666667777777777777777777666554443 32221 1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 70 TLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
..-.||..||-||.-||.+--.-+.+++.++.++.
T Consensus 152 ~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~ 186 (426)
T smart00806 152 EQRAELKSLQRELAVLRQTHNSFFTEIKESIKDIL 186 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22378888888888777776666665655555543
No 169
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=59.18 E-value=1.2e+02 Score=26.38 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=16.3
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHh
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRS 51 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRs 51 (144)
-+.+.++.++.+...+-.++++++.-+..|+.
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555555555544443333
No 170
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=59.06 E-value=76 Score=25.31 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=13.6
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQN 48 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~ 48 (144)
...++..|+..-..+-.++..|+..+..
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544443
No 171
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=58.12 E-value=1.7e+02 Score=28.18 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=11.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 66 DMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 66 dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
.++...+..+...|.+.+++-..|+
T Consensus 565 ~a~~ea~~~~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 565 ELEKEAQEALKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555444444444
No 172
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=58.00 E-value=37 Score=32.52 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHhHHHHh
Q 032236 73 VEVEQLRSEFQE---LRSTLQQQQDDVT 97 (144)
Q Consensus 73 sEVeqLRsEfqe---LRttLqqQ~e~~t 97 (144)
.|+++||+++.| ||..|+-+.+++.
T Consensus 594 kel~kl~~dleeek~mr~~lemei~~lk 621 (627)
T KOG4348|consen 594 KELEKLRKDLEEEKTMRSNLEMEIEKLK 621 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence 455555555433 5666665555543
No 173
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.95 E-value=89 Score=24.43 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 032236 78 LRSEFQELRS 87 (144)
Q Consensus 78 LRsEfqeLRt 87 (144)
+..++.+.+.
T Consensus 124 ~~~~~~~~~~ 133 (302)
T PF10186_consen 124 LQNELEERKQ 133 (302)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 174
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=57.88 E-value=1.4e+02 Score=28.60 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHH
Q 032236 52 KLDTQVKIYRDELTDMKKTLSV---EVEQLRSEFQELRST 88 (144)
Q Consensus 52 kLDtQVKtYr~EL~dLK~~Lns---EVeqLRsEfqeLRtt 88 (144)
.+..+++.|+.+|..+++.+.+ .+++|.+...+++..
T Consensus 692 ~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 731 (908)
T COG0419 692 QLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEEL 731 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888887 666665555555443
No 175
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.84 E-value=1.5e+02 Score=26.85 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=12.0
Q ss_pred HHHhhhhhhcccccCC
Q 032236 94 DDVTASLRNLGLQDFS 109 (144)
Q Consensus 94 e~~ta~L~nL~lqd~~ 109 (144)
..++..|+.||+-++.
T Consensus 382 ~~v~~~l~~L~m~~~~ 397 (563)
T TIGR00634 382 KRVEQELKALAMEKAE 397 (563)
T ss_pred HHHHHHHHhCCCCCcE
Confidence 4577888999987643
No 176
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=57.75 E-value=83 Score=24.02 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=14.1
Q ss_pred HHHHHHHhHHHHhhhhhhcc
Q 032236 85 LRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 85 LRttLqqQ~e~~ta~L~nL~ 104 (144)
.|..++..++++=--|+++.
T Consensus 78 ~~~~~q~EldDLL~ll~Dle 97 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLE 97 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHH
Confidence 44677888888777776664
No 177
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=57.47 E-value=1.1e+02 Score=25.12 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 032236 76 EQLRSEFQELR 86 (144)
Q Consensus 76 eqLRsEfqeLR 86 (144)
..++.++.+++
T Consensus 249 ~~~~~~l~~~~ 259 (423)
T TIGR01843 249 TEAQARLAELR 259 (423)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 178
>PLN02678 seryl-tRNA synthetase
Probab=56.67 E-value=1.3e+02 Score=27.41 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=45.6
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---hHHHHhhh
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ---QQDDVTAS 99 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq---Q~e~~ta~ 99 (144)
.+|-+|.+-+.+|+.++..|+.+ |..+-.|++.-+. -++-...|-.|+.+|+.++..|...++. ++..+-..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~e----rN~~sk~I~~~k~-~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKE----FNKLNKEVAKLKI-AKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888888777665 4444444443110 0111233444556666666665555433 33444556
Q ss_pred hhhcccccCC
Q 032236 100 LRNLGLQDFS 109 (144)
Q Consensus 100 L~nL~lqd~~ 109 (144)
|-|+=--|++
T Consensus 108 iPNi~~~~VP 117 (448)
T PLN02678 108 IGNLVHDSVP 117 (448)
T ss_pred CCCCCCccCC
Confidence 6666667765
No 179
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.60 E-value=87 Score=27.00 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 032236 38 RIQGLKQDLQNWRSKLDTQVKIYRDELTDMK 68 (144)
Q Consensus 38 Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK 68 (144)
++..+...+|-=+.+|-++|+.|.+.+.+.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666677777766666655
No 180
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=56.58 E-value=1.3e+02 Score=26.68 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=25.1
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhh
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSK 52 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRsk 52 (144)
.+..+..+|.+|.....++-.++..++..+.=|.+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 107 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDI 107 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777777777777777777766665544
No 181
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=56.18 E-value=57 Score=21.64 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=27.6
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 25 IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
|.++..-...|...+.....+|+.=-+ ..|+.=|. -.-||..++.++.+|++.|....
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~------~nY~~fI~-----as~~I~~m~~~~~~l~~~l~~l~ 78 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVY------ENYRDFIE-----ASDEISSMENDLSELRNLLSELQ 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666655554322 23443222 12344445555555554444433
No 182
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=55.64 E-value=34 Score=23.56 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=21.4
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNW-------RSKLDTQVKIYR 61 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~W-------RskLDtQVKtYr 61 (144)
.|.+.|+.|+.--..|=+-|..|+.|++.= -.+||+++.+|+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~ 55 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYK 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Confidence 344455555555555555555544444322 235777777775
No 183
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.48 E-value=1.5e+02 Score=26.39 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=55.4
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV---EVEQLRSEFQELR 86 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Lns---EVeqLRsEfqeLR 86 (144)
+.+-..+|.+-=.++-.++..|-.++..-|-.|-+|-+.|-..|..|+.+|++ -++.|++||.-++
T Consensus 120 ~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik 188 (300)
T KOG2629|consen 120 LEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIK 188 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45667788888888889999999999999999999999999999999999664 3566677776665
No 184
>PRK10869 recombination and repair protein; Provisional
Probab=55.29 E-value=1.3e+02 Score=27.48 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=37.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------HHHHhhhhhhcccccCC
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ--------QDDVTASLRNLGLQDFS 109 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ--------~e~~ta~L~nL~lqd~~ 109 (144)
|+-.|+.++..++..+.+ ..+....|..+++.++.++.++...|-+. -..++..|++||+-++.
T Consensus 321 ~~~~~~~~l~~eL~~L~~-~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 321 ELPQHHQQLLEEQQQLDD-QEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSMPHGK 392 (553)
T ss_pred HHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcE
Confidence 566666666665554432 22233445566666666666655555433 24577888999998764
No 185
>PRK01156 chromosome segregation protein; Provisional
Probab=55.28 E-value=1.5e+02 Score=27.75 Aligned_cols=61 Identities=13% Similarity=0.331 Sum_probs=35.4
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLDT---QVKIYRDELTDMKKTLSVEVEQLRSEFQ 83 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDt---QVKtYr~EL~dLK~~LnsEVeqLRsEfq 83 (144)
.+++.++..-...+-.++..|+.++..+.+.+.. +|..++.++..+++.+.. ++.++..+.
T Consensus 673 ~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~-l~~~~~~~~ 736 (895)
T PRK01156 673 TSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES-MKKIKKAIG 736 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3445555555566666677777777666665443 344467777666665543 555554443
No 186
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=55.16 E-value=1.2e+02 Score=25.07 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=45.5
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDT---QVKIYRDE-------LTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDt---QVKtYr~E-------L~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
+-+..+..|=+.|..|...+|.-+.+|+.+=++ .++-|..- ..-||.--...++.-..++..+|...+..
T Consensus 83 ~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e 162 (207)
T PF05010_consen 83 ADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAE 162 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334455567778888888888888888776332 22233222 23444444444444455555555555555
Q ss_pred HHHHhhhhhhcc
Q 032236 93 QDDVTASLRNLG 104 (144)
Q Consensus 93 ~e~~ta~L~nL~ 104 (144)
.-.+.++|+...
T Consensus 163 ~~aLqa~lkk~e 174 (207)
T PF05010_consen 163 LLALQASLKKEE 174 (207)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 187
>PRK14158 heat shock protein GrpE; Provisional
Probab=55.00 E-value=1.2e+02 Score=24.89 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=61.6
Q ss_pred CcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHhhHHHHHHHHH
Q 032236 14 KKENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE------------LTDMKKTLSVEVEQLRSE 81 (144)
Q Consensus 14 rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E------------L~dLK~~LnsEVeqLRsE 81 (144)
..+.+.-+..+|.+|...-.+|-+|+.-+.-|+.|.|-++..++...+.- +-+|..+|++-- ...
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~---~~~ 114 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHAD---EES 114 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccC---cch
Confidence 34456667788888888888999999999999999999998877654432 223444443210 012
Q ss_pred HHHHHHHHHHhHHHHhhhhhhcccccC
Q 032236 82 FQELRSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 82 fqeLRttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
+..+..-++-=...+-..|.++|+.-.
T Consensus 115 ~~~i~~Gv~mi~k~l~~vLek~Gv~~I 141 (194)
T PRK14158 115 MSAIIEGIRMTLSMLLSTLKKFGVTPV 141 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 445555555555556778889998763
No 188
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=54.94 E-value=1.2e+02 Score=25.04 Aligned_cols=57 Identities=14% Similarity=0.291 Sum_probs=48.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 032236 28 LNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQE 84 (144)
Q Consensus 28 LneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqe 84 (144)
|...-.+.+.||...-+-.+.|+..-.+++..-..|+..++.....|+-.|+..+.-
T Consensus 116 Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 116 LKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456667888999999999999999999999999999999999999988888765543
No 189
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=54.71 E-value=1.4e+02 Score=25.67 Aligned_cols=57 Identities=26% Similarity=0.412 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e 94 (144)
.+.++..|..+-+.-|-.+..|...+..|+. ++.-+||+.+|++..++=.....-..
T Consensus 96 ~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~---~~t~~eveK~Kk~Y~~~c~~~e~AR~ 152 (237)
T cd07685 96 PLSKLSLLIRDKQQLRKTFSEQWQLLKQEYT---KTTQQDIEKLKSQYRSLAKDSAQAKR 152 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999888888888888888888 56667899999888776554443333
No 190
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.74 E-value=1.3e+02 Score=25.08 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHH-------HHhhhhhh-cccccCCCCc
Q 032236 70 TLSVEVEQLRSEFQELRSTLQQQQD-------DVTASLRN-LGLQDFSGDD 112 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRttLqqQ~e-------~~ta~L~n-L~lqd~~~d~ 112 (144)
+|+..|.++++|-...+..++.-.+ .+-..+.. ||+...+.-.
T Consensus 64 ~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l~ 114 (230)
T PF10146_consen 64 TLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLPSLE 114 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Confidence 4455555555555555544443332 23334555 7777655443
No 191
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.29 E-value=1.5e+02 Score=25.74 Aligned_cols=48 Identities=29% Similarity=0.449 Sum_probs=26.8
Q ss_pred HHhHhHHhHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 032236 24 KIAELNESRAELLNRIQG---LKQDLQNWRSKLDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~---LK~DLq~WRskLDtQVKtYr~EL~dLK~~L 71 (144)
-+.+|..+=.|+=.+..+ .---|-|=++.|--||.+.++.|-++-.+|
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~ 128 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETL 128 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554444444333332 112456667777777777777777666554
No 192
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=53.02 E-value=63 Score=21.23 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=34.8
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHH-----HHHH---HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLK-----QDLQ---NWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK-----~DLq---~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL 85 (144)
...+|..|...+.++...+.+.. .++. ++.+.|+..+...+.++..++.-++.-.+.|..-+.+.
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666555 4443 34456667777777777766665555544444444433
No 193
>COG5649 Uncharacterized conserved protein [Function unknown]
Probab=52.86 E-value=18 Score=28.80 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=34.6
Q ss_pred CCCCCCCCCcCCccchhhHHhHhHHhHHHHHHHHHHHHHH
Q 032236 6 SDSTPSVPKKENITPVGSKIAELNESRAELLNRIQGLKQD 45 (144)
Q Consensus 6 s~~~p~~~rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~D 45 (144)
|-..|...+..+-.||+++|.+|-.=|.|.+.|+..|-.+
T Consensus 3 s~~~~~~~~~~~~~~v~a~I~am~~Wr~e~~~RL~ALI~e 42 (132)
T COG5649 3 SGGNPQIAKGYGDAPVQAYIAAMPGWRGEMGARLDALIEE 42 (132)
T ss_pred CCCCchhcccCCCchHHHHHHHccchHHHHHHHHHHHHHH
Confidence 3456777788899999999999999999999999998653
No 194
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=52.85 E-value=1.1e+02 Score=26.43 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=10.3
Q ss_pred ccchhhHHhHhHHhHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLN 37 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~ 37 (144)
..++..+|.+|..-..+|..
T Consensus 249 ~~~l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 249 NSELDGRIEALEKQLDALRL 268 (498)
T ss_pred CCchHHHHHHHHHHHHHHHH
Confidence 34455555555555555543
No 195
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=52.68 E-value=1e+02 Score=23.45 Aligned_cols=66 Identities=15% Similarity=0.329 Sum_probs=48.9
Q ss_pred HHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHhHHHHhhhhhh
Q 032236 37 NRIQGLKQ-------DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQL-RSEFQELRSTLQQQQDDVTASLRN 102 (144)
Q Consensus 37 ~Rvq~LK~-------DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqL-RsEfqeLRttLqqQ~e~~ta~L~n 102 (144)
.|.+.||+ ++..+|...+...+.|..+-++-......++++= ..++++|++..++-.++|-.-|-.
T Consensus 28 ~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~~ki~~ik~~~~~~~~~Vv~~Ll~ 101 (113)
T TIGR01147 28 RKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAKIREIKKAVQKNKDAVIKDLLH 101 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45555554 8999999999999999999887777766666543 356778888877777776655543
No 196
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=52.65 E-value=1e+02 Score=29.90 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=30.2
Q ss_pred HHHHHHHHHHH----HHHHHH---hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 34 ELLNRIQGLKQ----DLQNWR---SKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 34 ELL~Rvq~LK~----DLq~WR---skLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
.|..-|+.++. .+..|. +.|..++++|+.+|-.|++-||+- ++..+||.-
T Consensus 296 ~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-----sDYeeIK~E 352 (629)
T KOG0963|consen 296 QLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-----SDYEEIKKE 352 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHH
Confidence 34444444443 444454 456778888888888888888752 445454443
No 197
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=52.57 E-value=96 Score=26.09 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=6.7
Q ss_pred HHHhHHHHhhhhhhc
Q 032236 89 LQQQQDDVTASLRNL 103 (144)
Q Consensus 89 LqqQ~e~~ta~L~nL 103 (144)
|..+..+++..|++-
T Consensus 53 l~~~~~~L~~aL~~~ 67 (304)
T PF02646_consen 53 LSQEASNLTSALKNS 67 (304)
T ss_pred HHHHHHHHHHHHhCC
Confidence 344444444455443
No 198
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=52.55 E-value=44 Score=29.95 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 032236 37 NRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQL 78 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqL 78 (144)
+||..|--+|.--. +-...||+.++||-+.-.-|..+||..
T Consensus 236 Gria~Le~eLAmQK-s~seElkssq~eL~dfm~eLdedVEgm 276 (330)
T KOG2991|consen 236 GRIAELEIELAMQK-SQSEELKSSQEELYDFMEELDEDVEGM 276 (330)
T ss_pred ccHHHHHHHHHHHH-hhHHHHHHhHHHHHHHHHHHHHHHhcc
Confidence 57777777765433 344566666666666666666666653
No 199
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=52.41 E-value=1.3e+02 Score=24.82 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
+.-.|.+.+.++...|+.....+-.. +-+-+.++...+.+|...+..-|..+.++++.
T Consensus 208 ~~~~k~e~~e~e~~~l~e~~~~~~~~----le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~ 265 (297)
T PF02841_consen 208 EEQAKAEAAEKEKEKLEEKQKEQEQM----LEQQERSYEEHIKQLKEKMEEEREQLLQEQER 265 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666655443333 44445555566666666666666655555554
No 200
>PRK15396 murein lipoprotein; Provisional
Probab=52.20 E-value=54 Score=23.56 Aligned_cols=27 Identities=37% Similarity=0.641 Sum_probs=22.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 69 KTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 69 ~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
.+|+++|++|+++.+.+|..++.=++.
T Consensus 35 ~~L~~kvdql~~dv~~~~~~~~~a~~e 61 (78)
T PRK15396 35 QTLNAKVDQLSNDVNAMRSDVQAAKDD 61 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357799999999999999998876654
No 201
>PRK14154 heat shock protein GrpE; Provisional
Probab=51.99 E-value=1.4e+02 Score=24.86 Aligned_cols=92 Identities=12% Similarity=0.211 Sum_probs=59.0
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHhhHHHHHHH---HHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRD--------ELTDMKKTLSVEVEQLR---SEFQEL 85 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~--------EL~dLK~~LnsEVeqLR---sEfqeL 85 (144)
.+..+..+|.+|..--.+|-++...+..|.+|.|-+..-+....+. .|..+-..|..-+++.. ..+..|
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l 132 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSM 132 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHH
Confidence 3455677899999999999999999999999999998877765543 22222222222222111 123344
Q ss_pred HHHHHHhHHHHhhhhhhcccccC
Q 032236 86 RSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 86 RttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
+.-++-=...+-..|..+|+.-.
T Consensus 133 ~eGvemi~k~l~~vL~k~GVe~I 155 (208)
T PRK14154 133 RDGMSLTLDLLHNTLAKHGVQVI 155 (208)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEe
Confidence 44444444446677899998864
No 202
>PRK10780 periplasmic chaperone; Provisional
Probab=51.97 E-value=1e+02 Score=23.41 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIY 60 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtY 60 (144)
|=........+|+.=+..+..-+..|
T Consensus 48 le~~~~~~q~el~~~~~elq~~~~~~ 73 (165)
T PRK10780 48 LENEFKGRASELQRMETDLQAKMQKL 73 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 203
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.88 E-value=64 Score=20.95 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 032236 73 VEVEQLRSEFQELRS 87 (144)
Q Consensus 73 sEVeqLRsEfqeLRt 87 (144)
.++..|+.+++.|++
T Consensus 47 ~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 47 KELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444443
No 204
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=51.71 E-value=79 Score=24.58 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 032236 41 GLKQDLQNWRSKLDTQVKIYRDELTDMK 68 (144)
Q Consensus 41 ~LK~DLq~WRskLDtQVKtYr~EL~dLK 68 (144)
.|++.+..|.....+..+.|..+|..++
T Consensus 55 eLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 55 ELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 205
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=51.50 E-value=45 Score=24.30 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
|..||..++..||++|-+-|...-+ |.+.+ -+.+-.+|.++.-|.|-|.+
T Consensus 9 S~eEL~e~L~elkkELf~LR~q~at---------gql~n--~~~ir~iRR~IARilTvl~E 58 (87)
T PRK00461 9 SVEELEKLVIELKAELFTLRFKNAT---------GSLDQ--THKIKEIRKDIARILTILNE 58 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---------Ccccc--cHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999888843222 11111 23455555555555555554
No 206
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=51.38 E-value=1.4e+02 Score=28.55 Aligned_cols=40 Identities=13% Similarity=0.387 Sum_probs=31.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKK 69 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~ 69 (144)
+.+++.-+-++..=.+|-.|+..++.+.+-.++-+-.|..
T Consensus 387 e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~Lpq 426 (531)
T PF15450_consen 387 EAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQ 426 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4467888888888889999999998888877777666555
No 207
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=51.33 E-value=22 Score=28.66 Aligned_cols=43 Identities=33% Similarity=0.630 Sum_probs=16.3
Q ss_pred HHHHHhhhHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 46 LQNWRSKLDTQVKI---YRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 46 Lq~WRskLDtQVKt---Yr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
|.|.-+||+.-++. ...||.+ |..|-.||++||.|.-|||--|
T Consensus 2 LeD~EsklN~AIERnalLE~ELdE-KE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDE-KENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544432 3456644 7778888888888887777665
No 208
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=51.10 E-value=63 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.449 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 57 VKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 57 VKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
|.+-+.++-++-..-..|++.|+.|+.++|..+.+
T Consensus 11 ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~ 45 (159)
T PF05384_consen 11 IESSKEQIFEIAEQARQEYERLRKELEEVKEEVSE 45 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555666666666555555443
No 209
>PRK10132 hypothetical protein; Provisional
Probab=51.10 E-value=83 Score=23.52 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 032236 62 DELTDMKKTLSVEVEQLRSEFQE 84 (144)
Q Consensus 62 ~EL~dLK~~LnsEVeqLRsEfqe 84 (144)
.|+..||..+..=+...|.-+.+
T Consensus 41 ~~~~~lR~r~~~~L~~ar~~l~~ 63 (108)
T PRK10132 41 GEAEAARRKAQALLKETRARMHG 63 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555554444443
No 210
>PRK14150 heat shock protein GrpE; Provisional
Probab=50.82 E-value=82 Score=25.45 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 032236 58 KIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 58 KtYr~EL~dLK~~LnsEVeqLR 79 (144)
-..+.|.-.+|+....|++.++
T Consensus 62 lR~~AefeN~rkR~~kE~~~~~ 83 (193)
T PRK14150 62 LRARAEVENIRRRAEQDVEKAH 83 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555554444
No 211
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=50.74 E-value=79 Score=21.68 Aligned_cols=20 Identities=10% Similarity=0.438 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 032236 75 VEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 75 VeqLRsEfqeLRttLqqQ~e 94 (144)
|..+|+|.++||.++..=-+
T Consensus 16 i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544333
No 212
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=50.66 E-value=1.4e+02 Score=24.76 Aligned_cols=62 Identities=19% Similarity=0.416 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHH------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVK------IYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVK------tYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
+-.+|..-|..|...+..++..+...-. .|..-+...-.....+|..|+..+.+++...++=
T Consensus 275 ~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~ 342 (370)
T PF02181_consen 275 SLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQL 342 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777788888888887777765543 4556666666666677777777777776665543
No 213
>PF15294 Leu_zip: Leucine zipper
Probab=50.20 E-value=1.7e+02 Score=25.58 Aligned_cols=49 Identities=27% Similarity=0.462 Sum_probs=32.5
Q ss_pred HHHHHHH-----hhHHHHHHHHHHHHHHHHHHHh----------HHHHhhhhhhcccccCCCCccc
Q 032236 64 LTDMKKT-----LSVEVEQLRSEFQELRSTLQQQ----------QDDVTASLRNLGLQDFSGDDKE 114 (144)
Q Consensus 64 L~dLK~~-----LnsEVeqLRsEfqeLRttLqqQ----------~e~~ta~L~nL~lqd~~~d~~~ 114 (144)
|.-+..+ ||.|+..|+.|-+.||++|+.= ...+.+.|++|.- ..|+.+.
T Consensus 118 L~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~--~~~~~~~ 181 (278)
T PF15294_consen 118 LEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD--EQGDQKG 181 (278)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhc
Confidence 4445566 9999999999999999988753 3344555665543 3444443
No 214
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=50.11 E-value=1.7e+02 Score=25.28 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=47.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHhHHHHhhhh
Q 032236 28 LNESRAELLNRIQGLKQDLQNWR---SKLDTQVKIYRDELTDMKKTLSVEVEQLR----SEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 28 LneSr~ELL~Rvq~LK~DLq~WR---skLDtQVKtYr~EL~dLK~~LnsEVeqLR----sEfqeLRttLqqQ~e~~ta~L 100 (144)
+.++-..+..+|+.+++.|.+-. .+|+..++.=+.||--.++.|.+ +...| .||..|..-|+++-+.--..+
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s-Lq~vRPAfmdEyEklE~EL~~lY~~Y~~kf 245 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS-LQSVRPAFMDEYEKLEEELQKLYEIYVEKF 245 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666655544 46888888888888888877754 22222 455555566666666666666
Q ss_pred hhcc
Q 032236 101 RNLG 104 (144)
Q Consensus 101 ~nL~ 104 (144)
+||.
T Consensus 246 RNl~ 249 (267)
T PF10234_consen 246 RNLD 249 (267)
T ss_pred HhHH
Confidence 6654
No 215
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.95 E-value=96 Score=30.47 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=27.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 69 KTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 69 ~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
..++.++..|-+-+.-+|.+.++|+--..++++.|
T Consensus 665 q~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al 699 (741)
T KOG4460|consen 665 QLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSAL 699 (741)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56788899999999999999988887666666544
No 216
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.88 E-value=1.3e+02 Score=23.74 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
+.+.=+..+|. +-.+|...-.+.....++|.--+..|..||+.++..|...+..++.+++.
T Consensus 103 ey~~y~~svk~-~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~~~~~E~~r 163 (200)
T cd07624 103 EYLLYSDAVKD-VLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLECANADLKADLER 163 (200)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554 56677777777777777887777778888888888888888777666554
No 217
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=49.79 E-value=2.1e+02 Score=26.29 Aligned_cols=8 Identities=0% Similarity=-0.068 Sum_probs=2.8
Q ss_pred cchhhHHh
Q 032236 19 TPVGSKIA 26 (144)
Q Consensus 19 ~pi~~ki~ 26 (144)
.+++.-+.
T Consensus 182 ~~~~~L~~ 189 (650)
T TIGR03185 182 DLIDRLAG 189 (650)
T ss_pred HHHHHHHH
Confidence 33333333
No 218
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.60 E-value=2.3e+02 Score=29.60 Aligned_cols=60 Identities=28% Similarity=0.413 Sum_probs=42.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHh-------------------hHHHHHHHHHHHHHH-HHHHHhHHHHhhhhhhcc
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTL-------------------SVEVEQLRSEFQELR-STLQQQQDDVTASLRNLG 104 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~L-------------------nsEVeqLRsEfqeLR-ttLqqQ~e~~ta~L~nL~ 104 (144)
-|+-|||+|-.|.-..+.||++-|..+ +-||--|-.||.|=| .+||...+.++..+-.|.
T Consensus 266 qlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~dele 345 (1243)
T KOG0971|consen 266 QLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELE 345 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999888777776666655433 345666667777766 478888887777776664
No 219
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=49.54 E-value=1.4e+02 Score=24.09 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTA 98 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta 98 (144)
.+.+-..++.+++..+...+...=..|+..+..|...+++-+..+....+....
T Consensus 71 ~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~ 124 (247)
T PF06705_consen 71 QINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQ 124 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444445555555555555555555555555555555555555544444444333
No 220
>smart00338 BRLZ basic region leucin zipper.
Probab=49.43 E-value=71 Score=20.74 Aligned_cols=37 Identities=32% Similarity=0.449 Sum_probs=19.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 49 WRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 49 WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
+-..|..+|..+..|-.+ |..+|.+|+.++..|+.-+
T Consensus 27 ~~~~Le~~~~~L~~en~~----L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENER----LKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 334455555555554443 3455666666666666543
No 221
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=49.41 E-value=1.5e+02 Score=24.34 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHH
Q 032236 54 DTQVKIYRDELTDMKKTLSVEVEQLR----SEFQELRSTLQQ 91 (144)
Q Consensus 54 DtQVKtYr~EL~dLK~~LnsEVeqLR----sEfqeLRttLqq 91 (144)
..++..++.+|..++..++..+.+|. .+.+.+....+.
T Consensus 188 ~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 229 (301)
T PF14362_consen 188 RAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQA 229 (301)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555666666666666666666666 444444443333
No 222
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=49.36 E-value=1.9e+02 Score=25.64 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=44.7
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HhHHHHhhh
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ---QQQDDVTAS 99 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq---qQ~e~~ta~ 99 (144)
.+|-+|...+.+|+.++..|+.+ |..+-.+++.....-. -...|-.|+..|+.++.+|...++ .++...-..
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~----rn~~sk~i~~~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAE----RNALSKEIGQAKRKGE-DAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888777665 3444444443111000 012244455555555555554443 333344455
Q ss_pred hhhcccccCCC
Q 032236 100 LRNLGLQDFSG 110 (144)
Q Consensus 100 L~nL~lqd~~~ 110 (144)
|-|+=-.+++.
T Consensus 103 iPN~~~~~vP~ 113 (425)
T PRK05431 103 IPNLPHDSVPV 113 (425)
T ss_pred CCCCCCccCCC
Confidence 66666666653
No 223
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=49.28 E-value=1.5e+02 Score=24.33 Aligned_cols=55 Identities=13% Similarity=0.390 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDEL-TDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL-~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
+-.-+..|-.++..|-.....+-..|...| ..-...|+-.+.-+..++.||.+.+
T Consensus 46 itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666655 2333444555555666666666555
No 224
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=49.28 E-value=73 Score=29.48 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHH-H--hhhHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 35 LLNRIQGLKQDLQNW-R--SKLDTQV--KIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 35 LL~Rvq~LK~DLq~W-R--skLDtQV--KtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
+..||..|...+..= + +++...+ ...++|++.|-.++|.=++.|+.-.+.++...
T Consensus 430 i~~pI~~L~~~~~~i~~~~Gdl~~~i~~~~~~DEIg~La~afn~M~~~L~~~~~~l~~~s 489 (703)
T TIGR03785 430 ISWRIRRLSDDAEAAIDSQGRISGAIPASRSRDEIGDLSRSFAQMVARLRQYTHYLENMS 489 (703)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665432 1 3444444 35688999999999998888887666655543
No 225
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=49.26 E-value=1.4e+02 Score=24.14 Aligned_cols=34 Identities=35% Similarity=0.612 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDT---QVKIYRDELTDM 67 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDt---QVKtYr~EL~dL 67 (144)
.|+..+..+...|..|++.++. ++..|..++..|
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L 57 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESL 57 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 4677788888888888887774 466666666544
No 226
>PRK14143 heat shock protein GrpE; Provisional
Probab=49.02 E-value=1.6e+02 Score=24.76 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=36.1
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRD 62 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~ 62 (144)
.+..+..+|.+|..--.+|-+|+..+.-|+.|.|-+..-+....+.
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~ 113 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL 113 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888889989999999999888776655443
No 227
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=48.29 E-value=57 Score=21.46 Aligned_cols=29 Identities=38% Similarity=0.505 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 032236 73 VEVEQLRSEFQELRSTLQQQQDDVTASLRN 102 (144)
Q Consensus 73 sEVeqLRsEfqeLRttLqqQ~e~~ta~L~n 102 (144)
..+.+|.+-+++||.-+++|... ++-|+|
T Consensus 8 ~ql~~l~~~l~elk~~l~~Q~kE-~~~LRn 36 (45)
T PF11598_consen 8 KQLSELNQMLQELKELLRQQIKE-TRFLRN 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34444444455555555555443 344443
No 228
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=48.21 E-value=95 Score=21.84 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
|..||..++..||++|-+-|..+-+ |.|.+ ...+-..|..+.-+.|.+.+.
T Consensus 12 s~eeL~~~l~eLK~ELf~LR~q~a~---------g~l~n--~~~ir~vRr~IARi~Tv~~E~ 62 (69)
T COG0255 12 SVEELEEELRELKKELFNLRFQLAT---------GQLEN--PHRIREVRRDIARILTVLREK 62 (69)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---------CCCCC--cHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999977654 22221 244555566666666655544
No 229
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=47.97 E-value=2.5e+02 Score=30.64 Aligned_cols=81 Identities=30% Similarity=0.472 Sum_probs=41.3
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHhhHH---------HHHHH-HHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQN---WRSKLDTQVKIYRDELTDMKKTLSVE---------VEQLR-SEFQELRSTL 89 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~---WRskLDtQVKtYr~EL~dLK~~LnsE---------VeqLR-sEfqeLRttL 89 (144)
+-+..|.....+|-.||.-|..+|.. =|.+++-+..-+..||.+|+..|.-- +...| .||+.||..|
T Consensus 1090 ~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL 1169 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666653 34455555555555555554443322 11111 4666666666
Q ss_pred HHhHHHHhhhhhhc
Q 032236 90 QQQQDDVTASLRNL 103 (144)
Q Consensus 90 qqQ~e~~ta~L~nL 103 (144)
.+..-+.-+.+..|
T Consensus 1170 eee~~~~e~~~~~l 1183 (1930)
T KOG0161|consen 1170 EEETLDHEAQIEEL 1183 (1930)
T ss_pred HHHHHhHHHHHHHH
Confidence 65554444444443
No 230
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.75 E-value=1e+02 Score=31.56 Aligned_cols=70 Identities=29% Similarity=0.414 Sum_probs=46.2
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
+.++.+-|+---.-|=..+|.|-.-|+|=|-.+-|| |+--+++-.-+..-.+|+.||...++|+..+|++
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~-kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQ-KTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455566777777777877777654 4444555556667778888888888888777654
No 231
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=47.66 E-value=1.6e+02 Score=25.50 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=0.0
Q ss_pred hhhHHhHhHHhHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH------------HHHHH
Q 032236 21 VGSKIAELNESRA-ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV------------EVEQL 78 (144)
Q Consensus 21 i~~ki~ELneSr~-ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Lns------------EVeqL 78 (144)
+..++..+..... .+..++..+.+..+..-..+..++...+..+..+...+.. |++.|
T Consensus 65 L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyL 135 (372)
T PF04375_consen 65 LQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYL 135 (372)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHH
No 232
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=47.65 E-value=1.6e+02 Score=27.94 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=21.6
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQ 56 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQ 56 (144)
-.-|.+-...+.++..-|.+|+-++...|.+++-.
T Consensus 98 r~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 98 RKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666665554
No 233
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=47.43 E-value=1.2e+02 Score=25.32 Aligned_cols=69 Identities=28% Similarity=0.399 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHH--------HHHHHHhhhHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 32 RAELLNRIQGLKQ--------DLQNWRSKLDTQV--KIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 32 r~ELL~Rvq~LK~--------DLq~WRskLDtQV--KtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
|..++.|+-++.. =+|=||.+=--|+ -.-|.--.-|..+-.++++.||..- ..|+.|+++++-+|-
T Consensus 79 RR~~~~~l~~y~~~~P~~vRPL~QlWRe~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq----~~Lq~qL~~T~RKLE 154 (179)
T PF13942_consen 79 RRQMVDRLNSYSLQFPASVRPLLQLWREQQVLQLQLSEERARYQRLQQSSDSELDALRQQQ----QRLQYQLDTTTRKLE 154 (179)
T ss_pred HHHHHHHHHHhhhhcCHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 3455666655444 3789998644433 3344555677888889999998765 456678888888888
Q ss_pred hcc
Q 032236 102 NLG 104 (144)
Q Consensus 102 nL~ 104 (144)
||-
T Consensus 155 nLT 157 (179)
T PF13942_consen 155 NLT 157 (179)
T ss_pred hhh
Confidence 873
No 234
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=47.42 E-value=2.1e+02 Score=30.25 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=14.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHh
Q 032236 50 RSKLDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 50 RskLDtQVKtYr~EL~dLK~~L 71 (144)
+.+|.++|..|+.||.++++..
T Consensus 510 ~~~l~~~~~~~~eele~~q~~~ 531 (1317)
T KOG0612|consen 510 KRKLEALVRQLEEELEDAQKKN 531 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777775543
No 235
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=47.39 E-value=89 Score=21.30 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=6.1
Q ss_pred hhHHhHhHHhHHHHH
Q 032236 22 GSKIAELNESRAELL 36 (144)
Q Consensus 22 ~~ki~ELneSr~ELL 36 (144)
...|..|......++
T Consensus 21 ~~~v~~l~~l~~~~l 35 (117)
T smart00503 21 SQNVAELQKLHEELL 35 (117)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444444
No 236
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.18 E-value=1.7e+02 Score=24.47 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQL 78 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqL 78 (144)
+|..-+.++..|+..|..|..++
T Consensus 243 ~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 243 QVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666666666666655443
No 237
>COG2770 ResE FOG: HAMP domain [Signal transduction mechanisms]
Probab=47.10 E-value=30 Score=23.55 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 032236 73 VEVEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 73 sEVeqLRsEfqeLRttLqqQ~e 94 (144)
.|++.|.+.|..|+..++..++
T Consensus 59 dEi~~L~~a~~~m~~~l~~~~~ 80 (83)
T COG2770 59 DEIGELAKAFNRMRDSLQRALS 80 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666666665554
No 238
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=46.85 E-value=1.5e+02 Score=23.77 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=50.8
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHhhHHHHHHH--------HHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK----KTLSVEVEQLR--------SEFQELRST 88 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK----~~LnsEVeqLR--------sEfqeLRtt 88 (144)
|...|.+..+.+.+.-......++-|++||..-..=+...+.+-..++ ...+.|++++. .+.+..+..
T Consensus 84 I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~ 163 (205)
T PRK06231 84 IEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQ 163 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777788888888888888888888877777777665333 33334444333 334444555
Q ss_pred HHHhHHHHhhhhh
Q 032236 89 LQQQQDDVTASLR 101 (144)
Q Consensus 89 LqqQ~e~~ta~L~ 101 (144)
|+.|..++...++
T Consensus 164 Lk~ei~~lAv~iA 176 (205)
T PRK06231 164 LQKESVELAMLAA 176 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554444
No 239
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.85 E-value=2.3e+02 Score=25.99 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRs 80 (144)
+.+.+...-....+.++...|..++..++..+.+|...-..|....++|..
T Consensus 44 eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lek 94 (514)
T TIGR03319 44 EAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDR 94 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556677777788888877777777777766666655555543
No 240
>smart00338 BRLZ basic region leucin zipper.
Probab=46.77 E-value=27 Score=22.71 Aligned_cols=9 Identities=44% Similarity=0.682 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 032236 60 YRDELTDMK 68 (144)
Q Consensus 60 Yr~EL~dLK 68 (144)
.+.|+..|+
T Consensus 52 l~~e~~~lk 60 (65)
T smart00338 52 LRRELEKLK 60 (65)
T ss_pred HHHHHHHHH
Confidence 333333333
No 241
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=46.67 E-value=69 Score=19.82 Aligned_cols=58 Identities=16% Similarity=0.343 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 032236 39 IQGLKQDLQNWRSKLDTQVKIYRDELTDM--------KKTLSVEVEQLRSEFQELRSTLQQQQDDV 96 (144)
Q Consensus 39 vq~LK~DLq~WRskLDtQVKtYr~EL~dL--------K~~LnsEVeqLRsEfqeLRttLqqQ~e~~ 96 (144)
|+.+...++.....|+.++...+..+..| ..+......++...|..+...|..-...+
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l 74 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQAL 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444 23344444555555555555544444433
No 242
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=46.51 E-value=2.6e+02 Score=28.88 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 032236 57 VKIYRDELTDMKKTLSVEVE 76 (144)
Q Consensus 57 VKtYr~EL~dLK~~LnsEVe 76 (144)
|..-+.|+.+=-+.|..||+
T Consensus 392 ~~~~~~e~e~k~~~L~~eve 411 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVE 411 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 33333333333344444444
No 243
>PRK12704 phosphodiesterase; Provisional
Probab=46.51 E-value=2.4e+02 Score=25.98 Aligned_cols=53 Identities=19% Similarity=0.353 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQ 83 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfq 83 (144)
.+.+...-....|.++...|..++..++..+.+|......|+...++|.....
T Consensus 51 Ake~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e 103 (520)
T PRK12704 51 AEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555667777778888777777777777777666666555554333
No 244
>PF15463 ECM11: Extracellular mutant protein 11
Probab=46.47 E-value=1.3e+02 Score=22.77 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
..|+.+-..|=+.|..=|.++--.+..|..|+.+=-..|+.+..+|...|..||.-
T Consensus 79 d~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~ 134 (139)
T PF15463_consen 79 DWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEG 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777777777777888888888877777777777777777777753
No 245
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=46.44 E-value=1.6e+02 Score=28.10 Aligned_cols=76 Identities=29% Similarity=0.420 Sum_probs=47.3
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~t 97 (144)
.+|+..++..|..-+-+|= |-|-++-.-.+.||=.-++...++ .+-+.+ -++|||-|.-+|-+||.|++|.+.
T Consensus 131 Tn~Lsrkl~qLr~ek~~lE---q~leqeqef~vnKlm~ki~Klen~--t~~kq~--~leQLRre~V~lentlEQEqEalv 203 (552)
T KOG2129|consen 131 TNPLSRKLKQLRHEKLPLE---QLLEQEQEFFVNKLMNKIRKLENK--TLLKQN--TLEQLRREAVQLENTLEQEQEALV 203 (552)
T ss_pred cCchhHHHHHHHhhhccHH---HHHHHHHHHHHHHHHHHHHHhhhh--hHHhhh--hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5677777777764443332 233333334555555555444433 122222 248999999999999999999988
Q ss_pred hhh
Q 032236 98 ASL 100 (144)
Q Consensus 98 a~L 100 (144)
.+|
T Consensus 204 N~L 206 (552)
T KOG2129|consen 204 NSL 206 (552)
T ss_pred HHH
Confidence 876
No 246
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=46.44 E-value=85 Score=20.79 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=19.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
++..+..+|..+...++.||..+=-.=-.+.=.--.++..|+..
T Consensus 23 ~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~ 66 (87)
T PF08700_consen 23 EIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMEND 66 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544443333333333333444444443
No 247
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=46.32 E-value=50 Score=23.75 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=27.6
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDT 55 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDt 55 (144)
...+..+|..|.++..+|-..+..++.++.-|...|..
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777777766653
No 248
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=46.24 E-value=2.3e+02 Score=25.68 Aligned_cols=71 Identities=30% Similarity=0.362 Sum_probs=39.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHH---------
Q 032236 28 LNESRAELLNRIQGLKQDLQNWRS---KLDTQVKIYRDELTDMKKTLS----------VEVEQLRSEFQEL--------- 85 (144)
Q Consensus 28 LneSr~ELL~Rvq~LK~DLq~WRs---kLDtQVKtYr~EL~dLK~~Ln----------sEVeqLRsEfqeL--------- 85 (144)
|...-.+++.|+|.++--|-+-.+ .|+..+..-+.||..+++.|- .|.|.-..|+|+|
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~ 189 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFH 189 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555554444332 345556666666666666553 3555555555554
Q ss_pred -HHHHHHhHHHHhh
Q 032236 86 -RSTLQQQQDDVTA 98 (144)
Q Consensus 86 -RttLqqQ~e~~ta 98 (144)
++.|++|.++.+.
T Consensus 190 nl~yL~~qldd~~r 203 (338)
T KOG3647|consen 190 NLDYLKSQLDDRTR 203 (338)
T ss_pred hHHHHHHHHHHHhh
Confidence 4567777777654
No 249
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=46.13 E-value=83 Score=20.57 Aligned_cols=21 Identities=24% Similarity=0.669 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLD 54 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLD 54 (144)
+.+..|+.++.++..=+.+++
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~ 24 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLN 24 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444443
No 250
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.06 E-value=1.9e+02 Score=24.63 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=39.3
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
.+.|...++.+++..-.+...+++..+..|+.=. .++..++.++.+. ..|..+|..+.+....+|
T Consensus 215 ~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~----~~l~~l~~~~~~~----~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAELEEAEEQLAEKQAELAELE----EKLAALQKEYEEA----QKEKQELEEEIEETERKL 279 (344)
T ss_dssp CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhh
Confidence 5778888888888888888888888777776543 3333344333322 233444555554444443
No 251
>PRK01919 tatB sec-independent translocase; Provisional
Probab=45.95 E-value=83 Score=25.82 Aligned_cols=32 Identities=9% Similarity=0.333 Sum_probs=16.1
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQV 57 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQV 57 (144)
++|=++-.+=+.++.+++..-. +.+.-++.++
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~---d~K~ev~~E~ 54 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYIN---DVKAEVSREI 54 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3445555555666666654433 3344454444
No 252
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=45.94 E-value=2.5e+02 Score=26.89 Aligned_cols=85 Identities=25% Similarity=0.393 Sum_probs=56.8
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhh-hHH-----------------------HHHHHHHHHHHHH-HHh
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSK-LDT-----------------------QVKIYRDELTDMK-KTL 71 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRsk-LDt-----------------------QVKtYr~EL~dLK-~~L 71 (144)
.+.-+.+.+.+|++..++|=..+++.|.+|-.=... -.+ -|..|-+.+.++- +-+
T Consensus 254 ~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~C~~~~C~~i~~~~~~l~l~~~~~qLP~v~~~l~~l~~v~~~nl 333 (806)
T PF05478_consen 254 LLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDLCTNRECNSILSSLDILQLDADFSQLPNVTSQLNNLEEVIKTNL 333 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHhccccccCCCcccCCChHHHHHHHHHHHhccH
Confidence 445566777788888888888888888877665544 111 0233444444443 346
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 72 SVEVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 72 nsEVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
.+.|.+=.+-|+++...++.|..++...++
T Consensus 334 ~~~v~~~~~~~~~ip~~v~~qt~~~v~~ik 363 (806)
T PF05478_consen 334 SSIVQEGNSRFNDIPEKVQNQTSDVVPPIK 363 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 777888889999999999988886655443
No 253
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.79 E-value=2.9e+02 Score=26.68 Aligned_cols=8 Identities=13% Similarity=0.501 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 032236 34 ELLNRIQG 41 (144)
Q Consensus 34 ELL~Rvq~ 41 (144)
+|+..+..
T Consensus 515 ~li~~L~~ 522 (771)
T TIGR01069 515 VLIEKLSA 522 (771)
T ss_pred HHHHHHHH
Confidence 33333333
No 254
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=45.78 E-value=1.3e+02 Score=22.91 Aligned_cols=49 Identities=16% Similarity=0.466 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHH
Q 032236 37 NRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSE-FQELRSTL 89 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsE-fqeLRttL 89 (144)
.||..++.++..|. ..|...+.++..+-+.+..||+....+ ..++|..|
T Consensus 163 ~k~~~~~~ei~~~~----~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l 212 (236)
T PF09325_consen 163 DKVEQAENEIEEAE----RRVEQAKDEFEEISENIKKELERFEKEKVKDFKSML 212 (236)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555655554 334455566666666666666655432 23444443
No 255
>PRK01156 chromosome segregation protein; Provisional
Probab=45.58 E-value=2.7e+02 Score=26.25 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 032236 35 LLNRIQGLK 43 (144)
Q Consensus 35 LL~Rvq~LK 43 (144)
+-.++..|.
T Consensus 599 l~~~l~~le 607 (895)
T PRK01156 599 LESRLQEIE 607 (895)
T ss_pred HHhhHHHHH
Confidence 333444444
No 256
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=45.53 E-value=1.3e+02 Score=25.16 Aligned_cols=51 Identities=31% Similarity=0.525 Sum_probs=36.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTLS---------------VEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~Ln---------------sEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
|+|.||-.+ +.||.-|-||.-.|- -|||| +|-||+++++|...+.-.|.+-
T Consensus 106 Elq~mr~~l----n~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQ----LQsLR~avRqElqELE~QL~DR 171 (179)
T PF14723_consen 106 ELQQMRRSL----NSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQ----LQSLRSAVRQELQELEFQLEDR 171 (179)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 777777654 467777777776653 35555 4679999999998888877664
No 257
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.38 E-value=1.7e+02 Score=26.51 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=14.2
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhh
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskL 53 (144)
+..+.++.+.=.+.+..++.+..+|.++.+.|
T Consensus 265 d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l 296 (563)
T TIGR00634 265 DGSLRELAEQVGNALTEVEEATRELQNYLDEL 296 (563)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444444444444444444444444443
No 258
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=45.36 E-value=1e+02 Score=21.35 Aligned_cols=37 Identities=5% Similarity=0.200 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032236 61 RDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 61 r~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~t 97 (144)
.+...++|..+..-+++.|..+.++-..++.+.....
T Consensus 26 ~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 62 (94)
T PF05957_consen 26 GEKADEARDRAEEALDDARDRAEDAADQAREQAREAA 62 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777666666655443
No 259
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=45.32 E-value=2.5e+02 Score=25.82 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=36.5
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKT 70 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~ 70 (144)
....+.++++...++-..++.+++++.............++..|...+..
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 262 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELER 262 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888888888888887777766666666666554443
No 260
>PRK14163 heat shock protein GrpE; Provisional
Probab=45.28 E-value=1.8e+02 Score=24.30 Aligned_cols=82 Identities=18% Similarity=0.360 Sum_probs=54.1
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE------------LTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E------------L~dLK~~LnsEVeqLRsEfqeL 85 (144)
..-+..+|.+|..-..+|-.++..+.-|.+|.|-++..++...+.- |-+|..+|.. ..|
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~---------~~l 112 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREH---------GEL 112 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhc---------hhH
Confidence 4556777888888888888999999999999999988877665432 1233333332 123
Q ss_pred HHHHHHhHHHHhhhhhhcccccC
Q 032236 86 RSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 86 RttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
..-++-=...+-..|.++|+.-.
T Consensus 113 ~~Gv~mi~k~l~~~L~k~Gv~~I 135 (214)
T PRK14163 113 VGGFKSVAESLETTVAKLGLQQF 135 (214)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEe
Confidence 33333333445678889998863
No 261
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=45.11 E-value=44 Score=21.09 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=18.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHh
Q 032236 70 TLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
.|-+|.|+||..-..|+..|.+=
T Consensus 5 kL~sekeqLrrr~eqLK~kLeql 27 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999988888888877653
No 262
>PRK14011 prefoldin subunit alpha; Provisional
Probab=44.99 E-value=1.1e+02 Score=23.86 Aligned_cols=39 Identities=21% Similarity=0.438 Sum_probs=23.9
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQ 56 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQ 56 (144)
+.-+..||++|+.+...|..+|+.+...+..-+..|+-.
T Consensus 90 ~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k 128 (144)
T PRK14011 90 IEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR 128 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777777777776666555555444444
No 263
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=44.72 E-value=86 Score=20.35 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=12.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 032236 68 KKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 68 K~~LnsEVeqLRsEfqeLRttLq 90 (144)
-..|.+|...|+.++..|+..+.
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666655554443
No 264
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=44.66 E-value=55 Score=26.63 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=32.0
Q ss_pred HHHHHHhhHH-HHHHHHHHHHHHHHHHHhHHHHhhhhhhccccc
Q 032236 65 TDMKKTLSVE-VEQLRSEFQELRSTLQQQQDDVTASLRNLGLQD 107 (144)
Q Consensus 65 ~dLK~~LnsE-VeqLRsEfqeLRttLqqQ~e~~ta~L~nL~lqd 107 (144)
.-|+..|+.. +++.+..|-.|+..|++.+..+...|+.||---
T Consensus 60 ~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lG~~~ 103 (295)
T PF01031_consen 60 PALRKRLSELLVEHIRKSLPSLKSEIQKKLQEAEKELKRLGPPR 103 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3467777765 467788888888888888888888888887544
No 265
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.46 E-value=3e+02 Score=26.54 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=6.0
Q ss_pred hhhHHhHhHHhHHH
Q 032236 21 VGSKIAELNESRAE 34 (144)
Q Consensus 21 i~~ki~ELneSr~E 34 (144)
+..-|..|++.+.+
T Consensus 518 ~~~li~~l~~~~~~ 531 (782)
T PRK00409 518 LNELIASLEELERE 531 (782)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 266
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=44.42 E-value=1.7e+02 Score=23.61 Aligned_cols=72 Identities=18% Similarity=0.357 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHhHHHHhhhhhhc
Q 032236 32 RAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRS----EFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRs----EfqeLRttLqqQ~e~~ta~L~nL 103 (144)
|...-.|++.++..++.-.-.|.+.+|...+-...|+..+...+..+.. .|.+....++...+.+...+..|
T Consensus 29 r~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L 104 (247)
T PF06705_consen 29 REQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEAL 104 (247)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888888888888888777777777777777766663 33334444444444444444443
No 267
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=44.36 E-value=34 Score=27.08 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=16.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 032236 44 QDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQ 77 (144)
Q Consensus 44 ~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeq 77 (144)
++-+.-.--|..+..+|...|..+...|..+|..
T Consensus 23 ~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~ 56 (155)
T PF07464_consen 23 QNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKD 56 (155)
T ss_dssp --SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445555555555555555555555443
No 268
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=44.35 E-value=1.5e+02 Score=24.63 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhh
Q 032236 76 EQLRSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 76 eqLRsEfqeLRttLqqQ~e~~ta~L 100 (144)
++|+.|+.+...-+-+..+++.+.+
T Consensus 161 ~~l~eE~e~ae~k~e~~~e~~~~~M 185 (244)
T cd07595 161 DALKDEYEEAELKLEQCRDALATDM 185 (244)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333333344444443333
No 269
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.32 E-value=2.9e+02 Score=26.31 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcccc
Q 032236 73 VEVEQLRSEFQELRSTLQQQQDDVTASLRNLGLQ 106 (144)
Q Consensus 73 sEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~lq 106 (144)
..|.+|..|+.-.|.--..|+..+|--|++|..|
T Consensus 469 ~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeq 502 (518)
T PF10212_consen 469 QNISRLQDELETTRRNYEEQLSMMSEHLASMNEQ 502 (518)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666667777777777776543
No 270
>PRK03100 sec-independent translocase; Provisional
Probab=44.24 E-value=63 Score=25.41 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=9.1
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 032236 70 TLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRt 87 (144)
.|..|++.+|..+++++.
T Consensus 54 elg~e~~dlrk~l~el~~ 71 (136)
T PRK03100 54 ELGPEFDDLRKPLGELQK 71 (136)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 344455566655544443
No 271
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=44.17 E-value=39 Score=24.46 Aligned_cols=24 Identities=42% Similarity=0.572 Sum_probs=16.1
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHH
Q 032236 25 IAELNESRAELLNRIQGLKQDLQN 48 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~ 48 (144)
|.+|++-+..|=.|||.|+.+||.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777666665
No 272
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=44.10 E-value=1.1e+02 Score=21.40 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=29.3
Q ss_pred HHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 60 YRDELTDMKK---TLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 60 Yr~EL~dLK~---~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
-+.|+..||. +|..+-+.|+.+-+.|+..-...++-+.+-|+.|
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555554 5777888888888888766666666666666554
No 273
>PF13166 AAA_13: AAA domain
Probab=43.78 E-value=2.5e+02 Score=25.38 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIY------RDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtY------r~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~t 97 (144)
+.-..+..+|..+.+.+.....++-.++... ..+...-...++..++.++..+..++..|.+-+....
T Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~ 353 (712)
T PF13166_consen 280 EEYEKLIEELEKAIKKLEKAIENIIEQLESILSENDFYEEFEEDKEELKSAIEALKEELEELKKALEKKIKNPS 353 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444455566666666665554443333322 2333444555666666777777777777666554433
No 274
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.39 E-value=2.3e+02 Score=24.87 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=15.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 66 DMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 66 dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
.....|-....+|..++++|+..+.+-.+.
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666665555544443
No 275
>PLN02939 transferase, transferring glycosyl groups
Probab=43.29 E-value=1.1e+02 Score=30.92 Aligned_cols=40 Identities=25% Similarity=0.535 Sum_probs=33.2
Q ss_pred HHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 032236 34 ELL-NRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV 73 (144)
Q Consensus 34 ELL-~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Lns 73 (144)
+|| .+|.-|+.-||-=-..+.+||..|+.++.+++.+|+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (977)
T PLN02939 354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSK 394 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 7888888888888888888999998888888888775
No 276
>PRK10997 yieM hypothetical protein; Provisional
Probab=43.21 E-value=98 Score=28.67 Aligned_cols=49 Identities=39% Similarity=0.449 Sum_probs=30.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 46 LQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 46 Lq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
++-||..|.-|+.+++.|+- ..+-|+|-+|+++ |=.+-++++.+.+.+.
T Consensus 133 ~~~w~~~l~~~~~~~~~~~~------e~~re~~l~el~~-r~e~~~~l~~v~~~~~ 181 (487)
T PRK10997 133 LQRWRLSLVVQTTTLNQQLL------EQEREQLLAELQQ-RMTLSGQLEPVLAEND 181 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Confidence 68899999999999987654 3344444444433 2244455555555443
No 277
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=43.03 E-value=75 Score=27.45 Aligned_cols=69 Identities=14% Similarity=0.359 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 032236 33 AELLNRIQGLKQ-----DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRN 102 (144)
Q Consensus 33 ~ELL~Rvq~LK~-----DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~n 102 (144)
..|+.||.+|-. +=+. -+.|...|...-....++-..++..+.++...+.++...|..+.+.+++.|+.
T Consensus 173 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~ 246 (276)
T PF05929_consen 173 KSLFSKVKALFKKKEASDDEQ-FADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAA 246 (276)
T ss_pred hhhhHHhhhhhcCCcCcchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456666666521 1000 12333444444444444444444434344444444444443333334444443
No 278
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.94 E-value=1.5e+02 Score=27.13 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L 100 (144)
+...-|.+++-.+..+..|+++||.+ .-|+--=..++..++.||.+|+-++.+.+
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slkRt-~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLKRT-EEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHhhHHHHHHHHHHHHHHHHHHHhhh
No 279
>PRK03100 sec-independent translocase; Provisional
Probab=42.93 E-value=1.5e+02 Score=23.30 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 57 VKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 57 VKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
|+.+|.-.++.+..++.|+. .||.+||..|++-
T Consensus 37 vr~~R~~~~~~~~~~~~elg---~e~~dlrk~l~el 69 (136)
T PRK03100 37 LRQARDYASGATSQLREELG---PEFDDLRKPLGEL 69 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Confidence 45566667777777777664 7888888766653
No 280
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=42.87 E-value=2.6e+02 Score=28.65 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=45.0
Q ss_pred CccchhhHHh-------HhHHhHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHHhhHHH---------
Q 032236 17 NITPVGSKIA-------ELNESRAELLNRIQGLKQDL-----QNWRSKLDTQVKIYRDELTDMKKTLSVEV--------- 75 (144)
Q Consensus 17 ~~~pi~~ki~-------ELneSr~ELL~Rvq~LK~DL-----q~WRskLDtQVKtYr~EL~dLK~~LnsEV--------- 75 (144)
.+..++.+|+ ++++-|.+|.. +..+.++. ..=|.-|+.++++=|+=|..|=+++++-+
T Consensus 334 ~~~~l~~~IAdlRl~~f~~~q~~~~l~~-i~~~~~~~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~ 412 (1109)
T PRK10929 334 KPQQLDTEMAQLRVQRLRYEDLLNKQPQ-LRQIRQADGQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVA 412 (1109)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhh-hHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888 44555555443 55544322 11223355555555555566666655554
Q ss_pred -HHHHHHHHHHHHHHHHhH
Q 032236 76 -EQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 76 -eqLRsEfqeLRttLqqQ~ 93 (144)
+||.+...+++++|.+|+
T Consensus 413 q~QL~~~~~~l~~~L~~~l 431 (1109)
T PRK10929 413 NSQLEDALKEVNEATHRYL 431 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 577788888888888875
No 281
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.84 E-value=44 Score=28.51 Aligned_cols=50 Identities=30% Similarity=0.491 Sum_probs=26.8
Q ss_pred CCCCCCCcCCccchhhHHhHhHH---------------hHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032236 8 STPSVPKKENITPVGSKIAELNE---------------SRAELLNRIQGLKQDLQNWRSKLDTQV 57 (144)
Q Consensus 8 ~~p~~~rk~~~~pi~~ki~ELne---------------Sr~ELL~Rvq~LK~DLq~WRskLDtQV 57 (144)
++|++-|+..+.-|++.+.|.++ .|+-++.|++.-|+||.+|+.-+-.-+
T Consensus 28 ~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 28 SLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTT 92 (220)
T ss_pred cCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555556566666666666654 244455555555555555554443333
No 282
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=42.76 E-value=1.8e+02 Score=23.39 Aligned_cols=62 Identities=32% Similarity=0.514 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 032236 39 IQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLS----------VEVEQLRSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 39 vq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln----------sEVeqLRsEfqeLRttLqqQ~e~~ta~L 100 (144)
|+.|..|+..=|..|...=..|+.|---+...++ .+|-.||.-|.|||++-..-+.+.-+-|
T Consensus 104 l~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~ 175 (182)
T PF15035_consen 104 LQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEF 175 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333334433444566555566666555555444 5788999999999998665555544433
No 283
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=42.73 E-value=59 Score=27.39 Aligned_cols=40 Identities=23% Similarity=0.461 Sum_probs=36.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 032236 66 DMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLGL 105 (144)
Q Consensus 66 dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~l 105 (144)
++|..++..+++.+....+|...|.+-....+++|+||+.
T Consensus 177 e~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ 216 (239)
T PF05276_consen 177 ELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQ 216 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999973
No 284
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=42.68 E-value=1.8e+02 Score=23.36 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=25.0
Q ss_pred HHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 59 IYRDELTD---MKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 59 tYr~EL~d---LK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
...+||++ +..+|.-|++.|..|---|...|.+-++.
T Consensus 24 k~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~ 63 (134)
T PF15233_consen 24 KSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQET 63 (134)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455554 55677777777777777777777766664
No 285
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.53 E-value=2.5e+02 Score=25.85 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=56.5
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH-
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD- 95 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~- 95 (144)
+...+-.+|-+|.+.+.+|+.++++|+. =|..+-.++..-...=.+--..|-.|+..|+.++.++...+.+-..+
T Consensus 23 ~~~~~~~~~~~ld~~~r~~~~~~e~l~~----~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l 98 (429)
T COG0172 23 GDALDVDKLLELDEERRKLLRELEELQA----ERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAEL 98 (429)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4555667888999999999999988764 35555555541111000122456677788888888777776654444
Q ss_pred --HhhhhhhcccccCCC
Q 032236 96 --VTASLRNLGLQDFSG 110 (144)
Q Consensus 96 --~ta~L~nL~lqd~~~ 110 (144)
+-..|-|+...+++.
T Consensus 99 ~~~ll~ipNi~~~~VPv 115 (429)
T COG0172 99 DTLLLTIPNIPHESVPV 115 (429)
T ss_pred HHHHHhCCCCCccccCc
Confidence 445566666666653
No 286
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.31 E-value=1.6e+02 Score=28.32 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 53 LDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 53 LDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
+..-+..+..++..+...|++.-..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 267 LTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 287
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=42.26 E-value=3.6e+02 Score=27.06 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=49.9
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHH-----------------hhHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVK---IYRDELTDMKKT-----------------LSVEVEQLRS 80 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVK---tYr~EL~dLK~~-----------------LnsEVeqLRs 80 (144)
+.+-..+|.....+|+.-||..-+++++.-..|.+-+. .|-.-+-+||+- |..|..++-.
T Consensus 427 ~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQ 506 (786)
T PF05483_consen 427 FEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQ 506 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678899999999999999999998887776432 233333333333 3445555666
Q ss_pred HHHHHHHHHHHhHHHHh
Q 032236 81 EFQELRSTLQQQQDDVT 97 (144)
Q Consensus 81 EfqeLRttLqqQ~e~~t 97 (144)
+|..+-.-++.+++++.
T Consensus 507 E~~~~~~elKk~qedi~ 523 (786)
T PF05483_consen 507 ETSDMALELKKQQEDIN 523 (786)
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 66666666666665543
No 288
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=41.75 E-value=99 Score=20.20 Aligned_cols=19 Identities=11% Similarity=0.412 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 032236 61 RDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 61 r~EL~dLK~~LnsEVeqLR 79 (144)
+.||..|-...+.-...++
T Consensus 44 ~~el~~l~~~i~~~~~~~~ 62 (103)
T PF00804_consen 44 KRELDELTDEIKQLFQKIK 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 289
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=41.45 E-value=1.1e+02 Score=26.65 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRD-ELTDMKKTLSVEVEQLRSEFQE 84 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~-EL~dLK~~LnsEVeqLRsEfqe 84 (144)
+.-..-+.++..+++.+++=|..+|+=-..++. +=.+--..+..+||++..||-.
T Consensus 185 ~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~~~pekee~~r~~lE~aEDeFv~ 240 (289)
T PF10455_consen 185 TTLNTDFKKANKARKKVENSRLQFDAARANLKNKAKPEKEEQLRVELEQAEDEFVS 240 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccCHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666654444433 2222223555566666666643
No 290
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=41.42 E-value=1.4e+02 Score=21.76 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032236 73 VEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 73 sEVeqLRsEfqeLRttLqqQ 92 (144)
.|+..+..+|+.....++++
T Consensus 83 ~~l~~~~~~l~~~~~~~~~~ 102 (158)
T PF03938_consen 83 QELQQKEQELQQFQQQAQQQ 102 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 291
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=41.38 E-value=1.8e+02 Score=23.10 Aligned_cols=60 Identities=27% Similarity=0.368 Sum_probs=36.5
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHH
Q 032236 26 AELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL----SVEVEQLRSEFQEL 85 (144)
Q Consensus 26 ~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L----nsEVeqLRsEfqeL 85 (144)
+.|.....-+.+|+-.+-.|+.+-..-+|+++.+.-..|.+-=.+| ..|+.-+-+.+--|
T Consensus 34 aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL 97 (140)
T PF04513_consen 34 AQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNL 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888888877766665555554444433333 34444444433333
No 292
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=41.21 E-value=74 Score=22.76 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=13.0
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhh
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSK 52 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRsk 52 (144)
..+|..|+++...|-..++.++..+..|+..
T Consensus 92 ~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 92 KKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 293
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=41.17 E-value=2.8e+02 Score=26.24 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=0.0
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR---------SEFQELRSTLQ 90 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR---------sEfqeLRttLq 90 (144)
|+...+..|.++...--...+..-.+++.||..+..=....+. -.++-+.|..|++.+- .-+-|+=.-|+
T Consensus 423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~-Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~ 501 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQ-KEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIR 501 (594)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHH
Q ss_pred HhHHHHhhhhhh
Q 032236 91 QQQDDVTASLRN 102 (144)
Q Consensus 91 qQ~e~~ta~L~n 102 (144)
+|.++.+..|.+
T Consensus 502 KQk~eI~KIl~D 513 (594)
T PF05667_consen 502 KQKEEIEKILSD 513 (594)
T ss_pred HHHHHHHHHHHH
No 294
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=41.09 E-value=55 Score=28.43 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=35.0
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQV 57 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQV 57 (144)
|--|+|-|++.|-+-+.+|+.-|+.||..|..-+++-..+-
T Consensus 213 G~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~ 253 (302)
T PF09738_consen 213 GDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQK 253 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 56788999999999999999999999999987776665543
No 295
>PF15294 Leu_zip: Leucine zipper
Probab=40.83 E-value=2.5e+02 Score=24.57 Aligned_cols=83 Identities=25% Similarity=0.405 Sum_probs=54.8
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHh
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQ---DLQNWRSKLDTQVKIYRDELTDMKKT-----LSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~---DLq~WRskLDtQVKtYr~EL~dLK~~-----LnsEVeqLRsEfqeLRttLqqQ 92 (144)
+..-|..|++--..|=+|+.++-+ ..-+=+++|..|.+.-+.+.++.+.. =..++..|..-|..+++.+.+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 345566666666667777766655 45667899999999999988887762 1234444556666666666666
Q ss_pred HHHHhhhhhhc
Q 032236 93 QDDVTASLRNL 103 (144)
Q Consensus 93 ~e~~ta~L~nL 103 (144)
+.+.+..++.|
T Consensus 210 ~~d~~~~~k~L 220 (278)
T PF15294_consen 210 LQDKESQQKAL 220 (278)
T ss_pred HHHHHHHHHHH
Confidence 66655555554
No 296
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.76 E-value=3.9e+02 Score=27.97 Aligned_cols=72 Identities=24% Similarity=0.452 Sum_probs=46.1
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHhhH----------HHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRS-----------KLDTQVKIYRDELTDMKKTLSV----------EVEQL 78 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRs-----------kLDtQVKtYr~EL~dLK~~Lns----------EVeqL 78 (144)
-...+|..+.++=.....-|..|..++.---. .|++++-+-++++.-..++|+- .++++
T Consensus 255 e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i 334 (1174)
T KOG0933|consen 255 EMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEI 334 (1174)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34567777888777777777777765544433 7888888888887766665553 34455
Q ss_pred HHHHHHHHHHHHH
Q 032236 79 RSEFQELRSTLQQ 91 (144)
Q Consensus 79 RsEfqeLRttLqq 91 (144)
++.+.+.|..|..
T Consensus 335 ~~~i~e~~~~l~~ 347 (1174)
T KOG0933|consen 335 RKNIEEDRKKLKE 347 (1174)
T ss_pred HHhHHHHHHHHHH
Confidence 5555555555443
No 297
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.74 E-value=2.8e+02 Score=27.22 Aligned_cols=65 Identities=18% Similarity=0.392 Sum_probs=35.6
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLS---VEVEQLRSEFQELRST 88 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln---sEVeqLRsEfqeLRtt 88 (144)
..|.++..--.+|-+++..++..+. -.-..+..+..-..++-.|++.|. .+|++|+.+|.+||.-
T Consensus 443 ~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 443 RELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333344444444444333 122234455555667777777775 4688888888888743
No 298
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.73 E-value=3.5e+02 Score=26.24 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=44.0
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQ------VKIYRDELTDMKKTLS---VEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQ------VKtYr~EL~dLK~~Ln---sEVeqLRsEfqeLRttLqqQ~ 93 (144)
.+|+.|++-..+--.-++.|++..-.-+..++.| |+.-+.|.-.|+..|| ++.+.|+++.-++..-++.+.
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f 373 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFF 373 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455555544444445555555555555555543 6666666666666553 667777766666665555544
Q ss_pred HHHhhhhh
Q 032236 94 DDVTASLR 101 (144)
Q Consensus 94 e~~ta~L~ 101 (144)
+.+.+.|.
T Consensus 374 ~~le~~~~ 381 (581)
T KOG0995|consen 374 KELEKKFI 381 (581)
T ss_pred HHHHHHHH
Confidence 44444433
No 299
>PRK14144 heat shock protein GrpE; Provisional
Probab=40.60 E-value=1.4e+02 Score=24.72 Aligned_cols=91 Identities=10% Similarity=0.175 Sum_probs=59.7
Q ss_pred cCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHH
Q 032236 15 KENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE------------LTDMKKTLSVEVEQLRSEF 82 (144)
Q Consensus 15 k~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E------------L~dLK~~LnsEVeqLRsEf 82 (144)
.+....+..+|.+|..-..+|-.|+..+.-|+.|.|-++..+++..+.- +-+|..+|++-.. .+.
T Consensus 44 ~~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~---~~~ 120 (199)
T PRK14144 44 HPSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQLADK---NSD 120 (199)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHcccc---cch
Confidence 3356667788999999999999999999999999999998887765543 2234444432110 011
Q ss_pred HHHHHHHHHhHHHHhhhhhhcccccC
Q 032236 83 QELRSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 83 qeLRttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
..+..-++-=...+-..|.+.|+.-.
T Consensus 121 ~~i~~Gv~mi~k~l~~~L~k~GV~~I 146 (199)
T PRK14144 121 PSMHEGLELTMKLFLDALQKFDVEQI 146 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 23333444334445667888888753
No 300
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=40.46 E-value=2e+02 Score=30.89 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=58.9
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQD--LQNWRSKLDTQVKIYRDELTDMKKTL------SVEVEQLRSEFQELRS 87 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~D--Lq~WRskLDtQVKtYr~EL~dLK~~L------nsEVeqLRsEfqeLRt 87 (144)
+=|..-|.-|++|...-..|+.|-+.||+- +- -.+.-+-....-|+.+|..| -.+|++|-+.|++||.
T Consensus 1164 ~CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~g----ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~ 1239 (1758)
T KOG0994|consen 1164 ECFQTWDAILQELALRTHRLINRAKELKQTGVLG----AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRR 1239 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch----hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 446677889999999999999999999872 22 23334445556677777777 3578999999999998
Q ss_pred HHHHhHHHHhhh
Q 032236 88 TLQQQQDDVTAS 99 (144)
Q Consensus 88 tLqqQ~e~~ta~ 99 (144)
.|+.-.+.++.-
T Consensus 1240 ~l~~~~e~L~~~ 1251 (1758)
T KOG0994|consen 1240 QLQALTEDLPQE 1251 (1758)
T ss_pred HHHHHHhhhhhh
Confidence 888766655443
No 301
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=40.45 E-value=2.7e+02 Score=24.88 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhh-hHHH---HH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSK-LDTQ---VK-IYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRsk-LDtQ---VK-tYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
.-..+-+.+|+.+|.+|.+|..- -++- |. .+---++.+......+++.+.+-|.++......+-.++..-|..++
T Consensus 275 ~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~ 354 (473)
T PF14643_consen 275 KICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTEAQSEDLFKFFQEAA 354 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999852 1222 22 2345567778888888888988898888888888777766665544
No 302
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=40.44 E-value=1.8e+02 Score=22.96 Aligned_cols=67 Identities=13% Similarity=0.358 Sum_probs=0.0
Q ss_pred hhhHHhHhHHhHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAEL-------LNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQL-RSEFQELRSTLQQ 91 (144)
Q Consensus 21 i~~ki~ELneSr~EL-------L~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqL-RsEfqeLRttLqq 91 (144)
+..-+..+......| -.||+.++.+++.|..+ |...+.+...+.+....||... +.-..++|.+|..
T Consensus 120 ~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~----~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~ 194 (216)
T cd07627 120 AESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERR----ASELKKEFEEVSELIKSELERFERERVEDFRNSVEI 194 (216)
T ss_pred HHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 303
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=40.44 E-value=9.3 Score=36.72 Aligned_cols=87 Identities=21% Similarity=0.381 Sum_probs=0.0
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRS----------KLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELR 86 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRs----------kLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLR 86 (144)
.+.-+...+.+-+.++..|-.+++.|..|+..-|. .|..|+...+.||.++|+.+..++...-.+|.+.|
T Consensus 244 qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaK 323 (859)
T PF01576_consen 244 QLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAK 323 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34455566777778888899999999988876554 45568888899999999999999998888898988
Q ss_pred HHHHHhHHHHhhhhhhc
Q 032236 87 STLQQQQDDVTASLRNL 103 (144)
Q Consensus 87 ttLqqQ~e~~ta~L~nL 103 (144)
..|..++.++...+..+
T Consensus 324 KkL~~~L~el~e~le~~ 340 (859)
T PF01576_consen 324 KKLERKLQELQEQLEEA 340 (859)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777766665555443
No 304
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=40.35 E-value=1.7e+02 Score=22.52 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=4.8
Q ss_pred HhHhHHhHHHH
Q 032236 25 IAELNESRAEL 35 (144)
Q Consensus 25 i~ELneSr~EL 35 (144)
|....-|+++|
T Consensus 25 lE~~K~S~~eL 35 (107)
T PF09304_consen 25 LEDEKTSQGEL 35 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhHHHH
Confidence 33344444444
No 305
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=40.31 E-value=59 Score=23.05 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=24.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 50 RSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 50 RskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
|.+|-++...-..+++...++|+.+=.=|=.||.+||..+.
T Consensus 12 K~~lk~~L~~I~~~~~~i~~~ld~~~~ClL~e~e~i~~~f~ 52 (70)
T PF10372_consen 12 KEQLKQYLEQIEEEISQIIQTLDEDDCCLLCEFEEIREKFL 52 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TT--GGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCceechhHHHHHHHHH
Confidence 45566666777778888888888654445555555555544
No 306
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=40.28 E-value=1.1e+02 Score=20.15 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhH
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLD 54 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLD 54 (144)
|-.||...+..||.+|.+-|...-
T Consensus 8 s~~eL~~~l~elk~eL~~Lr~q~~ 31 (58)
T PF00831_consen 8 SDEELQEKLEELKKELFNLRFQKA 31 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999988887654
No 307
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=40.08 E-value=38 Score=19.80 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 032236 74 EVEQLRSEFQELRSTL 89 (144)
Q Consensus 74 EVeqLRsEfqeLRttL 89 (144)
||++||+.+.+|...|
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6777777777776655
No 308
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=39.91 E-value=93 Score=19.36 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
..+.+.+-+++-.++..+..++..-...+.+|..++..+..-+..+|.=...||.
T Consensus 11 D~v~q~L~~i~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~R~~~~~Lrp 65 (68)
T PF07730_consen 11 DGVGQSLTAIKMQLEALRRRLADDPEEAREELEEIRELLREALQELRRIIHELRP 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-
T ss_pred hHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777776655667777777777777777666666666554
No 309
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=39.87 E-value=1.6e+02 Score=22.16 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=29.5
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELT 65 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~ 65 (144)
|...+.+-.+.+.+.-.+....++.|+.||..-..-+...+.+-.
T Consensus 58 I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~ 102 (156)
T CHL00118 58 IRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAK 102 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777888888766666655555533
No 310
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=39.84 E-value=3.4e+02 Score=25.85 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDM 67 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dL 67 (144)
.|=..++.|++++.+|..++..||+.. ..|+.|
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~n-e~Ls~L 116 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENN-EQLSRL 116 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 344567788999999999999998743 355444
No 311
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=39.79 E-value=55 Score=31.24 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=11.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 032236 68 KKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 68 K~~LnsEVeqLRsEfqeLRttLq 90 (144)
|..|..||++||+++++|+.-|+
T Consensus 81 r~~L~~everLraei~~l~~~I~ 103 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIE 103 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555544443
No 312
>PRK14156 heat shock protein GrpE; Provisional
Probab=39.69 E-value=1.2e+02 Score=24.54 Aligned_cols=86 Identities=20% Similarity=0.357 Sum_probs=52.8
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE------------LTDMKKTLSVEVEQLRSEFQELR 86 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E------------L~dLK~~LnsEVeqLRsEfqeLR 86 (144)
+++.++|.+|..--.+|-+|+..+..|.+|.|-++..+....+.- +-+|..+|++. .....++
T Consensus 30 ~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~-----~~~~~l~ 104 (177)
T PRK14156 30 TPEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVE-----GLTDDVK 104 (177)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCc-----ccchhHH
Confidence 456677778887778888888888888888888887776654432 22334444321 0112233
Q ss_pred HHHHHhHHHHhhhhhhcccccCC
Q 032236 87 STLQQQQDDVTASLRNLGLQDFS 109 (144)
Q Consensus 87 ttLqqQ~e~~ta~L~nL~lqd~~ 109 (144)
.-++-=...+-..|.++|+.-..
T Consensus 105 ~Gv~mi~k~l~~~L~~~GV~~i~ 127 (177)
T PRK14156 105 KGLEMVQESLIQALKEEGVEEVA 127 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCeecC
Confidence 33443344456678888887643
No 313
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=39.62 E-value=65 Score=26.08 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 59 IYRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 59 tYr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
...+|++.|-.++|.=++.|+.-+...+.
T Consensus 217 ~~~dEi~~l~~~~n~m~~~l~~~~~~~~~ 245 (461)
T PRK09470 217 TGPQEFRQAGASFNQMVTALERMMTSQQR 245 (461)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999988888866654333
No 314
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.46 E-value=1.7e+02 Score=22.17 Aligned_cols=41 Identities=32% Similarity=0.452 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHH
Q 032236 51 SKLDTQVKIYRDELTDMKKTLS---VEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 51 skLDtQVKtYr~EL~dLK~~Ln---sEVeqLRsEfqeLRttLqq 91 (144)
..|..|+..--.+|++||..+. .|--.|+-|=+-||..|.+
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666667777776543 3444667777777776664
No 315
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=39.44 E-value=31 Score=24.84 Aligned_cols=18 Identities=50% Similarity=0.833 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 032236 29 NESRAELLNRIQGLKQDL 46 (144)
Q Consensus 29 neSr~ELL~Rvq~LK~DL 46 (144)
.+.|.||+.+|+.+|+++
T Consensus 71 ~~~R~el~~~i~~~k~~i 88 (90)
T PF14159_consen 71 AENRQELLQKIQSLKKEI 88 (90)
T ss_pred hHhHHHHHHHHHHHHHHh
Confidence 478999999999999875
No 316
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.40 E-value=3.6e+02 Score=26.02 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 032236 34 ELLNRIQGLKQ 44 (144)
Q Consensus 34 ELL~Rvq~LK~ 44 (144)
+|+.++...+.
T Consensus 520 ~li~~l~~~~~ 530 (782)
T PRK00409 520 ELIASLEELER 530 (782)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 317
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=39.31 E-value=3e+02 Score=25.09 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032236 71 LSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 71 LnsEVeqLRsEfqeLRttLqq 91 (144)
+...+..||.+..+.|..|++
T Consensus 402 i~e~l~~Lrk~E~eAr~kL~~ 422 (569)
T PRK04778 402 LSEMLQGLRKDELEAREKLER 422 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544443
No 318
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.27 E-value=2.3e+02 Score=25.99 Aligned_cols=53 Identities=23% Similarity=0.420 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 52 KLDTQVKIYRDELTDMKKT---LSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 52 kLDtQVKtYr~EL~dLK~~---LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
.++.+++.-+++|.+|..+ -..+|++|+..|+++|.+|-.+..++-.++..|.
T Consensus 112 ~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le 167 (560)
T PF06160_consen 112 EIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELE 167 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHH
Confidence 3456677777777766543 4568999999999999988776655554444443
No 319
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.20 E-value=2.8e+02 Score=24.67 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=20.0
Q ss_pred chhhHHhHhHHhHHHHHHHH---HHHHHHHHHHHhhhHHHH
Q 032236 20 PVGSKIAELNESRAELLNRI---QGLKQDLQNWRSKLDTQV 57 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rv---q~LK~DLq~WRskLDtQV 57 (144)
+.+.+|.+|...-.+|-..+ +.-+.-++..+.-|+...
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777776666654433 333344445554455444
No 320
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=39.16 E-value=1.3e+02 Score=28.70 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=34.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 47 QNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 47 q~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
...-..|+.|++.+...+.++...|..--++|+..|..|-+.|.
T Consensus 599 ~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~ms 642 (661)
T PRK06664 599 YNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVK 642 (661)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688888888888888888888888888888888777664
No 321
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=39.14 E-value=1.6e+02 Score=22.77 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=13.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 032236 69 KTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 69 ~~LnsEVeqLRsEfqeLRttLq 90 (144)
..|+.+|+.|+....+|.+-++
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 86 DELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666655443
No 322
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=39.11 E-value=1.2e+02 Score=25.49 Aligned_cols=46 Identities=26% Similarity=0.506 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 58 KIYRDELTDMKKTLSV-----------EVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 58 KtYr~EL~dLK~~Lns-----------EVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
+.|..|+..|+..+.. |.+++..-...|..-.+.|++.+....+-|
T Consensus 27 ~~Y~~ei~~L~~~i~~~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L 83 (298)
T PF11262_consen 27 ELYDEEIERLEKEISQMSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRL 83 (298)
T ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555 555555555555555555555544444444
No 323
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=38.79 E-value=2e+02 Score=22.96 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=45.2
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
.|-..+..+++-|.+-+..|..||+.|..-| ..++-.|-+|+ +=|=|.|+.||.+.|++
T Consensus 78 ~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l----~~kad~vvsYq-------------ll~hr~e~ee~~~~l~~---- 136 (175)
T PRK13182 78 IVQNISSVDFEQLEAQLNTITRRLDELERQL----QQKADDVVSYQ-------------LLQHRREMEEMLERLQK---- 136 (175)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHH-------------HHHhHHHHHHHHHHHHH----
Confidence 3444566788888888888888887765544 56777888886 23456777777766653
Q ss_pred Hhhhhhhcc
Q 032236 96 VTASLRNLG 104 (144)
Q Consensus 96 ~ta~L~nL~ 104 (144)
+.+.++.+.
T Consensus 137 le~~~~~~e 145 (175)
T PRK13182 137 LEARLKKLE 145 (175)
T ss_pred HHHHHHHHH
Confidence 444455544
No 324
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=38.77 E-value=1.1e+02 Score=29.33 Aligned_cols=83 Identities=18% Similarity=0.382 Sum_probs=57.1
Q ss_pred CCccchhhHHhHhHHhH---HHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 16 ENITPVGSKIAELNESR---AELLNR----IQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr---~ELL~R----vq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
+.+..+...|+-|.-|- +.|+.- |.++..+|+-||+.--. .-.||..=+..--.-++-|..++++|...
T Consensus 479 ~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq----~~~elq~eq~~t~~a~epL~~~la~lq~~ 554 (583)
T KOG3809|consen 479 EKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQ----NEQELQNEQAATFGASEPLYNILANLQKE 554 (583)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHH----hHHHHHhhhhcccccchHHHHHHHHHHHH
Confidence 34555556666666554 334433 46899999999985322 23455555666677889999999999999
Q ss_pred HHHhHHHHhhhhhh
Q 032236 89 LQQQQDDVTASLRN 102 (144)
Q Consensus 89 LqqQ~e~~ta~L~n 102 (144)
|..+++.+.++=++
T Consensus 555 I~d~~e~i~~~r~~ 568 (583)
T KOG3809|consen 555 INDTKEEISKARGR 568 (583)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887766444
No 325
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.49 E-value=2.9e+02 Score=29.18 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032236 32 RAELLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskL 53 (144)
-.|.-..|-.+|.+|++|...+
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~ 558 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQEL 558 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH
Confidence 3333334444444444444443
No 326
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=38.44 E-value=3.2e+02 Score=25.14 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=15.8
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032236 27 ELNESRAELLNRIQGLKQDLQNWRSKLDTQV 57 (144)
Q Consensus 27 ELneSr~ELL~Rvq~LK~DLq~WRskLDtQV 57 (144)
++...|.++-.++...+.+|+..-.+|+..-
T Consensus 59 E~~~~R~Ele~el~~~e~rL~qrE~rL~qRe 89 (514)
T TIGR03319 59 EVHKLRAELERELKERRNELQRLERRLLQRE 89 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444555555555555443
No 327
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=38.27 E-value=2.2e+02 Score=28.02 Aligned_cols=43 Identities=23% Similarity=0.382 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032236 36 LNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEF 82 (144)
Q Consensus 36 L~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEf 82 (144)
|.|-+++-++-..|-+.+-.|...-+.|.. .+..+|++|..++
T Consensus 41 lkrer~~rkee~a~l~~~k~qlr~~q~e~q----~~~~ei~~LqeEL 83 (775)
T PF10174_consen 41 LKRERALRKEEAAELSRLKEQLRVTQEENQ----KAQEEIQALQEEL 83 (775)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHhhHH----HHHHHHHHHHHHH
Confidence 678888888888888888888887777776 4556777777766
No 328
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=38.01 E-value=1.8e+02 Score=22.12 Aligned_cols=68 Identities=25% Similarity=0.339 Sum_probs=46.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 28 LNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL---SVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 28 LneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L---nsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
+-+.=+.+-.+|..=|.--=+=|..|.+..+.-..+...|...+ ..|.|+|+.|++-|..--+.|.+-
T Consensus 46 ~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~ 116 (120)
T PF14931_consen 46 FIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEYESLQKVEQEQNEL 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555677788877777666666665544 689999999999999988888764
No 329
>PRK14139 heat shock protein GrpE; Provisional
Probab=37.95 E-value=2.2e+02 Score=23.14 Aligned_cols=89 Identities=16% Similarity=0.242 Sum_probs=58.0
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------HH----HHHHHhhHHHHHHHHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE--------LT----DMKKTLSVEVEQLRSEFQ 83 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E--------L~----dLK~~LnsEVeqLRsEfq 83 (144)
..+.-+..+|.+|.+--.+|-++...+.-|.+|.|-++..+....+.- |. +|..+|++ ....+.
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~----~~~~~~ 107 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALAD----ESGDLE 107 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc----ccchHH
Confidence 345556778999999999999999999999999999988776554432 22 23333322 122333
Q ss_pred HHHHHHHHhHHHHhhhhhhcccccC
Q 032236 84 ELRSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 84 eLRttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
.+..-++-=...+...|..+|+.-.
T Consensus 108 ~l~~Gv~mi~k~l~~vL~k~Gv~~I 132 (185)
T PRK14139 108 KLREGVELTLKQLTSAFEKGRVVEI 132 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcee
Confidence 3444444334446677888998763
No 330
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=37.89 E-value=2.7e+02 Score=25.43 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSV-EVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 56 QVKtYr~EL~dLK~~Lns-EVeqLRsEfqeLRttLqq 91 (144)
+.+.++..|.++...|+. +.+.++..+++|+.-++.
T Consensus 554 e~~~i~~~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~ 590 (627)
T PRK00290 554 EKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQK 590 (627)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 345666666666766654 334444444444444333
No 331
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=37.69 E-value=98 Score=29.59 Aligned_cols=63 Identities=16% Similarity=0.333 Sum_probs=36.0
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDM---KKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dL---K~~LnsEVeqLRsEfqeLRttLq 90 (144)
.|+.|+.+..++..-=..|-.||+....| |-+|+.||.-| ..+|+..=..++.=|..+|..|+
T Consensus 390 ~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d-----------~wsynaELlVlleN~~tld~~Ds~~~~L~ekvk~qL~ 455 (550)
T PF00509_consen 390 QFEQIDKEFNEVEKRIDNLEKKVDDKIAD-----------VWSYNAELLVLLENQRTLDLHDSNVNNLYEKVKRQLR 455 (550)
T ss_dssp EEEECSCSSSTTGHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred chhhHHHHHHHHHHHHHHHHHhhhccchh-----------hhcccHHHHHHhccccchhhhHHHHHHHHHHHHHHHh
Confidence 45566666655554333334444444433 78999998765 45666655555555555555443
No 332
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=37.63 E-value=11 Score=34.92 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032236 74 EVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 74 EVeqLRsEfqeLRttLqq 91 (144)
++..|.+++++++..|..
T Consensus 186 ~~~~l~~e~~~l~~~le~ 203 (722)
T PF05557_consen 186 QIQSLESELEELKEQLEE 203 (722)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 333
>PRK04654 sec-independent translocase; Provisional
Probab=37.60 E-value=2.6e+02 Score=23.84 Aligned_cols=7 Identities=29% Similarity=0.814 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 032236 66 DMKKTLS 72 (144)
Q Consensus 66 dLK~~Ln 72 (144)
+||+.|+
T Consensus 58 ELrk~l~ 64 (214)
T PRK04654 58 ELKRSLQ 64 (214)
T ss_pred HHHHHHH
Confidence 4444443
No 334
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=37.52 E-value=2e+02 Score=27.27 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=23.0
Q ss_pred hhHHhHhHHhHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHH
Q 032236 22 GSKIAELNESRAELLNRIQG-------LKQDLQNWRSKLDTQVKIYRDEL 64 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~-------LK~DLq~WRskLDtQVKtYr~EL 64 (144)
..++..|+.-..++-.+++. |-++++-|+.+|.-+-..+...+
T Consensus 381 e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~ 430 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEAL 430 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444455444444444443 44567778777665555554443
No 335
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=37.46 E-value=2.8e+02 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.489 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032236 59 IYRDELTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 59 tYr~EL~dLK~~LnsEVeqLRsEfqeL 85 (144)
.|+.++..|+..|...++.++.-+..+
T Consensus 116 ~y~~~~~~l~~~l~~~l~~~~~~y~~~ 142 (332)
T TIGR01541 116 LYKEQLAAIKAALNEALAELHAYYAAE 142 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777766666655444443
No 336
>PRK14157 heat shock protein GrpE; Provisional
Probab=37.16 E-value=1.2e+02 Score=25.61 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=19.5
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVK 58 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVK 58 (144)
.+|.+|.+-..++..|+.-++-|.+|.|-+..-++.
T Consensus 84 ~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e 119 (227)
T PRK14157 84 TPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQD 119 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555544443
No 337
>PRK14159 heat shock protein GrpE; Provisional
Probab=37.00 E-value=1.4e+02 Score=24.12 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=56.6
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE------------LTDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E------------L~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
-|.+|.+|.+-..+|-.++.-++-|+.|.|-+..-++...+.- +-+|..+|++.-. -.....+..-
T Consensus 28 ~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~--~~~~~~l~~G 105 (176)
T PRK14159 28 EDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECH--DEISLKIKEG 105 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--cchHHHHHHH
Confidence 3688899999999999999999999999999998887766542 2345555543110 0111223333
Q ss_pred HHHhHHHHhhhhhhcccccC
Q 032236 89 LQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 89 LqqQ~e~~ta~L~nL~lqd~ 108 (144)
++-=...+-..|+..|+.-.
T Consensus 106 v~mi~k~l~~vL~k~Gv~~I 125 (176)
T PRK14159 106 VQNTLDLFLKKLEKHGVALI 125 (176)
T ss_pred HHHHHHHHHHHHHHCcCEec
Confidence 33333445567889998853
No 338
>PF14182 YgaB: YgaB-like protein
Probab=36.93 E-value=96 Score=22.84 Aligned_cols=33 Identities=21% Similarity=0.533 Sum_probs=28.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 032236 70 TLSVEVEQLRSEFQELRSTLQQQQDDVTASLRN 102 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~n 102 (144)
++..||.+.|.++++++....+|-+.|-.+..+
T Consensus 44 ~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI~sy~~ 76 (79)
T PF14182_consen 44 SIQEEISQMKKELKEIQRVFEKQTEEVIRSYQS 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999998777654
No 339
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.87 E-value=1.6e+02 Score=22.68 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 032236 71 LSVEVEQLRSEFQELRSTLQQQQDDVTASLRN 102 (144)
Q Consensus 71 LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~n 102 (144)
||..+..|..|++.++..+......+...+.-
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888777777666655543
No 340
>PRK14139 heat shock protein GrpE; Provisional
Probab=36.85 E-value=1.5e+02 Score=24.12 Aligned_cols=41 Identities=5% Similarity=0.111 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032236 36 LNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 36 L~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRs 80 (144)
-.+|..|++.+..|+.++ ...+.|+...|+....|.+.++.
T Consensus 38 ~~~l~~le~e~~elkd~~----lR~~AefeN~rKR~~kE~e~~~~ 78 (185)
T PRK14139 38 EAELAEAEAKAAELQDSF----LRAKAETENVRRRAQEDVAKAHK 78 (185)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777776444 55667777788888888777763
No 341
>PRK07737 fliD flagellar capping protein; Validated
Probab=36.78 E-value=1.7e+02 Score=26.62 Aligned_cols=49 Identities=8% Similarity=0.224 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhHHHHhhhh
Q 032236 52 KLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL---QQQQDDVTASL 100 (144)
Q Consensus 52 kLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL---qqQ~e~~ta~L 100 (144)
.|+.|++.+..++..+...|..--++|+..|..|-.++ +.|..-++..|
T Consensus 445 ~l~~~i~~l~~~i~~~~~rl~~~e~ry~~qf~ale~~~s~mnsq~s~L~~~l 496 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQKANEQSMYLMNAL 496 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57778888888888888888888888888888776655 44555555444
No 342
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.76 E-value=3.1e+02 Score=24.46 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=41.8
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---h----hHHHHHHHHHHHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKT---L----SVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~---L----nsEVeqLRsEfqeLRttLq 90 (144)
-+...-++|.++-.....+++.+.+=...=-+.++.|-+..++=...||+. + ...++.|+.++++.+..+.
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHH
Confidence 345556777777777777777777666666666666655544333333332 2 3345566666666555554
No 343
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=36.73 E-value=1.3e+02 Score=20.10 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=10.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhh
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSK 52 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRsk 52 (144)
+.|..|-.++..++..+.++...
T Consensus 26 e~R~~l~~~~~~~~~~~~~~~~~ 48 (74)
T PF12732_consen 26 ETREKLKDKAEDLKDKAKDLYEE 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 344
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=36.60 E-value=2e+02 Score=22.21 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=35.1
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLS 72 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln 72 (144)
...+.+-.+.+.+.-......+.-|.++|..-..-++.++.+-..++..+-
T Consensus 61 ~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il 111 (184)
T CHL00019 61 LNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLI 111 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666677777777778888888888888777777666555443
No 345
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.30 E-value=2.4e+02 Score=23.04 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 71 LSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 71 LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
|-.+++.|..|...|...+..=.++
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544443443
No 346
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.26 E-value=3.7e+02 Score=28.20 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=61.4
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLD------TQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLD------tQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
..+..-|..++.--.+.+.+|+.|-.++-.-++.|+ +.+|.-.+|+.+-|+.|=.|=.+||+.+.-+++-|..+
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666667778888888888777776665 45777888899999999999999999999998888877
Q ss_pred HHHHhh
Q 032236 93 QDDVTA 98 (144)
Q Consensus 93 ~e~~ta 98 (144)
...+-+
T Consensus 494 ~~~L~~ 499 (1200)
T KOG0964|consen 494 EKNLRA 499 (1200)
T ss_pred HHHHHH
Confidence 765544
No 347
>PRK14147 heat shock protein GrpE; Provisional
Probab=36.12 E-value=1.5e+02 Score=23.62 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
|-.++..|++++..|+.++ -..+.|+-..|+....|++.++
T Consensus 23 l~~~l~~l~~e~~elkd~~----lR~~Ad~eN~rkR~~kE~e~~~ 63 (172)
T PRK14147 23 LKAEVESLRSEIALVKADA----LRERADLENQRKRIARDVEQAR 63 (172)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777776665433 3445666666666666666655
No 348
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=36.11 E-value=1.8e+02 Score=21.68 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=36.2
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQ 77 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeq 77 (144)
|...|.+-...+.+.-......+..|.++|..-..-+...+.+-..+......+.+.
T Consensus 38 I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~ 94 (159)
T PRK09173 38 IKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEE 94 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677777777777788887777777777776655555444444433
No 349
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.02 E-value=5.5e+02 Score=27.14 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=7.8
Q ss_pred HhHhHHhHHHHHHHHHHHHH
Q 032236 25 IAELNESRAELLNRIQGLKQ 44 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~ 44 (144)
+.+|.+...+...++..++.
T Consensus 357 LeELee~Lee~eeeLeelee 376 (1486)
T PRK04863 357 LEELEERLEEQNEVVEEADE 376 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444433333
No 350
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.00 E-value=2.2e+02 Score=23.58 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=42.0
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----------HHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTD-----------MKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~d-----------LK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
.|..+..|+..+-++|..+ -+..|...+..-+..|..=+.+ +.++...=+..+.+-|.++|.+|++.
T Consensus 40 av~~m~~a~~~is~~l~~~--~~~~~~~~~~~~~e~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR 117 (225)
T cd07590 40 AVLALSKAEQRLSQDLASG--PLCEDNDELRNLVEALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRR 117 (225)
T ss_pred HHHHHHHHHhHHHHHHHhc--ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556665555555543 1222322233334444444434 44444445566779999999999864
Q ss_pred ------HHHHhhhhhhc
Q 032236 93 ------QDDVTASLRNL 103 (144)
Q Consensus 93 ------~e~~ta~L~nL 103 (144)
.+...+++..|
T Consensus 118 ~~Kl~DYD~~r~~~~kl 134 (225)
T cd07590 118 EQSLQEYERLQAKVEKL 134 (225)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 34445555544
No 351
>PRK14141 heat shock protein GrpE; Provisional
Probab=35.30 E-value=2.6e+02 Score=23.20 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=38.1
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRD 62 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~ 62 (144)
.++..+|.+|.+.-.+|-.|+..+.-|+.|.|-++..++...+.
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~ 77 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARA 77 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999998887766553
No 352
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=35.15 E-value=1.9e+02 Score=21.66 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=47.3
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHhhHHHHHHH--------HHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK----KTLSVEVEQLR--------SEFQELRST 88 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK----~~LnsEVeqLR--------sEfqeLRtt 88 (144)
|...+.+-.+.+.+.-.-....++-|.++|..-..-+...+.+-...+ ...+.|.+++. .+.+..+..
T Consensus 44 I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~ 123 (164)
T PRK14471 44 IKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAE 123 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666677777778888876666666665544333 33344444433 455556666
Q ss_pred HHHhHHHHhhhhh
Q 032236 89 LQQQQDDVTASLR 101 (144)
Q Consensus 89 LqqQ~e~~ta~L~ 101 (144)
|+.+..++...++
T Consensus 124 l~~~i~~la~~~a 136 (164)
T PRK14471 124 IKNQVANLSVEIA 136 (164)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666554443
No 353
>PLN02320 seryl-tRNA synthetase
Probab=35.00 E-value=3.4e+02 Score=25.40 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=36.7
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH---HHhhhh
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQD---DVTASL 100 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e---~~ta~L 100 (144)
+|-+|.+-+.++..++..|+.+ |..+-.+++..+. ++-...|-.|+..|+.++.+|...++.-.+ ..-..|
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~e----rn~~sk~i~~~~~--~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAE----RNAVANKMKGKLE--PSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555555555555554443 2223333322111 011223444666666666666665544333 334445
Q ss_pred hhcccccCC
Q 032236 101 RNLGLQDFS 109 (144)
Q Consensus 101 ~nL~lqd~~ 109 (144)
-|+=--+++
T Consensus 168 PN~~h~~VP 176 (502)
T PLN02320 168 PNMTHPDVP 176 (502)
T ss_pred CCCCCccCC
Confidence 555455554
No 354
>PRK14127 cell division protein GpsB; Provisional
Probab=34.88 E-value=1.9e+02 Score=21.86 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 49 WRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 49 WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
+|+-=-.+|..|=+++.+==..|..|+..|+.+...|+..|.+-...
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444567777777777766777777777777777777666554443
No 355
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=34.54 E-value=1.6e+02 Score=20.65 Aligned_cols=60 Identities=17% Similarity=0.358 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 36 LNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK----KTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 36 L~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK----~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
+..++.++.++......++.-+..+..=+.... ..+...++.|+..+..++..+......
T Consensus 145 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~ 208 (213)
T cd00176 145 LKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKK 208 (213)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333332222221 334555556666666665555554443
No 356
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=34.49 E-value=2.2e+02 Score=25.37 Aligned_cols=39 Identities=8% Similarity=0.341 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 51 SKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 51 skLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
..|+.+++.+..++..+...|...-++|+..|-.|-..+
T Consensus 409 ~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~ 447 (462)
T PRK08032 409 DGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLM 447 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777776655544
No 357
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=34.46 E-value=2e+02 Score=23.09 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 37 NRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
.+|+.|+..+..|+ .+....+.|+-.+|+.+..|++..+
T Consensus 43 ~~i~~Le~q~~e~~----~~~lr~~Ae~eN~rkR~~re~e~~~ 81 (193)
T COG0576 43 QEIAELEAQLEELK----DKYLRAQAEFENLRKRTEREREEAK 81 (193)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555533 3344455555555555555555544
No 358
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=34.43 E-value=5.2e+02 Score=26.92 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=58.2
Q ss_pred CcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH-------------HHHHHHH
Q 032236 14 KKENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV-------------EVEQLRS 80 (144)
Q Consensus 14 rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Lns-------------EVeqLRs 80 (144)
...+|-...--..++...-.+++....+.-..+++=+..+.+++..|+.+++...+-+.+ ...+...
T Consensus 616 k~~~f~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~ 695 (1072)
T KOG0979|consen 616 KSRNFFSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKE 695 (1072)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344666666667777777778877777777788888889999999999998877654332 2222333
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 81 EFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 81 EfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
-++-++.-|-.|.+.+.+.++++-
T Consensus 696 ~ie~~~~~l~~qkee~~~~~~~~I 719 (1072)
T KOG0979|consen 696 RIENLVVDLDRQEEEYAASEAKKI 719 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555543
No 359
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=34.43 E-value=2.5e+02 Score=22.73 Aligned_cols=82 Identities=12% Similarity=0.230 Sum_probs=51.3
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----hHHHHH--------HHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL----SVEVEQ--------LRSEFQELRST 88 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L----nsEVeq--------LRsEfqeLRtt 88 (144)
|...|.+-...+.+.-.....-+..|.+||..-..-+...+.+-...+..+ +.|.++ ++.|.+..+..
T Consensus 41 I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~ 120 (246)
T TIGR03321 41 IAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDE 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777888888888877777776665444433 334443 34555666666
Q ss_pred HHHhHHHHhhhhhh
Q 032236 89 LQQQQDDVTASLRN 102 (144)
Q Consensus 89 LqqQ~e~~ta~L~n 102 (144)
|+.|.-++.-.++.
T Consensus 121 l~~ei~~la~~~A~ 134 (246)
T TIGR03321 121 LRRRTGAEVFAIAR 134 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555544443
No 360
>PRK14151 heat shock protein GrpE; Provisional
Probab=34.29 E-value=2.4e+02 Score=22.54 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=58.2
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------HH----HHHHHhhHHHHHHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE--------LT----DMKKTLSVEVEQLRSEFQE 84 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E--------L~----dLK~~LnsEVeqLRsEfqe 84 (144)
...-+.++|.+|..--.+|-.|+..+.-|.+|.|-+...++...+.- |. +|..+|++-- .-...++.
T Consensus 21 ~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~-~~~~~~~~ 99 (176)
T PRK14151 21 AGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSS-ADDEAIKP 99 (176)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc-ccchhHHH
Confidence 44556678889988888999999999999999999998887665532 22 3334443200 00012334
Q ss_pred HHHHHHHhHHHHhhhhhhcccccC
Q 032236 85 LRSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 85 LRttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
+..-++-=...+-..|..+|+.-.
T Consensus 100 ~~~Gv~mi~k~l~~~L~k~Gv~~i 123 (176)
T PRK14151 100 MREGVELTLKMFQDTLKRYQLEAV 123 (176)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEe
Confidence 444444444445567888998764
No 361
>PF14282 FlxA: FlxA-like protein
Probab=34.17 E-value=1.3e+02 Score=21.85 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcccc
Q 032236 54 DTQVKIYRDELTDMKKT--LSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLGLQ 106 (144)
Q Consensus 54 DtQVKtYr~EL~dLK~~--LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~lq 106 (144)
..|++....+|..|... |..|. -+..+..|+.|+..+.+.|+.|-.|
T Consensus 25 ~~Qi~~Lq~ql~~l~~~~~~~~e~------k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 25 QKQIKQLQEQLQELSQDSDLDAEQ------KQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666652 33332 2455666777777777777766544
No 362
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=34.08 E-value=1.9e+02 Score=21.21 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=44.1
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHhhHHHHHHH--------HHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK----KTLSVEVEQLR--------SEFQELRST 88 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK----~~LnsEVeqLR--------sEfqeLRtt 88 (144)
|...|.+-.+.+.+.-..+...+..|.++|.....-+...+.+....+ ...+.|++++. .+.+..+..
T Consensus 40 I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~ 119 (156)
T PRK05759 40 IADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREE 119 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666667777777777777776666655555444333 33344555444 334444555
Q ss_pred HHHhHHHHhhh
Q 032236 89 LQQQQDDVTAS 99 (144)
Q Consensus 89 LqqQ~e~~ta~ 99 (144)
|+.+..++.-.
T Consensus 120 l~~~~~~lA~~ 130 (156)
T PRK05759 120 LRKQVADLAVA 130 (156)
T ss_pred HHHHHHHHHHH
Confidence 55555444333
No 363
>PRK14140 heat shock protein GrpE; Provisional
Probab=33.96 E-value=1.4e+02 Score=24.38 Aligned_cols=90 Identities=20% Similarity=0.327 Sum_probs=54.6
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE------------LTDMKKTLSVEVEQLRSEFQ 83 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E------------L~dLK~~LnsEVeqLRsEfq 83 (144)
.-+..+..+|.+|..--.+|-.++..++-|++|.|.+....+...+.- +-+|..+|++.- --..+.
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~--~~~~~~ 114 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEA--DDEQTK 114 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ccchHH
Confidence 345557778888888888888888888899999998888777654432 122333332100 001233
Q ss_pred HHHHHHHHhHHHHhhhhhhccccc
Q 032236 84 ELRSTLQQQQDDVTASLRNLGLQD 107 (144)
Q Consensus 84 eLRttLqqQ~e~~ta~L~nL~lqd 107 (144)
.+..-++-=...+-..|..+|+.-
T Consensus 115 ~i~~Gv~mi~k~l~~~L~k~GV~~ 138 (191)
T PRK14140 115 SLLKGVEMVHRQLLEALKKEGVEV 138 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEe
Confidence 344333333344566788899864
No 364
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.89 E-value=74 Score=23.50 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=11.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 032236 64 LTDMKKTLSVEVEQLRSEFQE 84 (144)
Q Consensus 64 L~dLK~~LnsEVeqLRsEfqe 84 (144)
+..-+..|-+|-+||+.|-.-
T Consensus 44 ~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 44 AQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666665443
No 365
>PRK13411 molecular chaperone DnaK; Provisional
Probab=33.86 E-value=3.1e+02 Score=25.49 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhH
Q 032236 58 KIYRDELTDMKKTLSV 73 (144)
Q Consensus 58 KtYr~EL~dLK~~Lns 73 (144)
+.++..|..++..|..
T Consensus 558 ~~i~~~l~~~~~wL~~ 573 (653)
T PRK13411 558 QRAEQKVEQLEAALTD 573 (653)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4455555555555543
No 366
>PF13514 AAA_27: AAA domain
Probab=33.85 E-value=4.7e+02 Score=25.75 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=26.7
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIY 60 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtY 60 (144)
.+.++......+-.||+.++.++..|+..+..=+..|
T Consensus 737 ~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l 773 (1111)
T PF13514_consen 737 ELREALAEIRELRRRIEQMEADLAAFEEQVAALAERL 773 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555556677788899999999999888776554443
No 367
>PF13514 AAA_27: AAA domain
Probab=33.84 E-value=4.7e+02 Score=25.75 Aligned_cols=82 Identities=21% Similarity=0.393 Sum_probs=62.7
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLD-----TQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDV 96 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLD-----tQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ 96 (144)
..++..+..-...+-.++..+...+..++..++ ..+-....+|..|...+. ++...+.++..++..+......+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~-~~~~~~~dl~~~~~e~~~~~~~~ 319 (1111)
T PF13514_consen 241 AERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRG-EYRKARQDLPRLEAELAELEAEL 319 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777778888888888877764 345556777777776664 48888889999999998888888
Q ss_pred hhhhhhcc
Q 032236 97 TASLRNLG 104 (144)
Q Consensus 97 ta~L~nL~ 104 (144)
..-++.||
T Consensus 320 ~~~~~~lg 327 (1111)
T PF13514_consen 320 RALLAQLG 327 (1111)
T ss_pred HHHHHhcC
Confidence 88889998
No 368
>PRK14154 heat shock protein GrpE; Provisional
Probab=33.82 E-value=1.8e+02 Score=24.27 Aligned_cols=41 Identities=10% Similarity=0.327 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
|-.+|..|++.+..++.++ ...+.|+..+|+....|++.++
T Consensus 57 l~~el~~le~e~~elkd~~----lRl~ADfeNyRKR~~kE~e~~~ 97 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQY----LRAQAEMDNLRKRIEREKADII 97 (208)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666554333 3445666667777777766665
No 369
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.80 E-value=71 Score=27.85 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=0.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032236 35 LLNRIQGLKQDLQNWRS 51 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRs 51 (144)
|-.+++.||+++.+++.
T Consensus 103 l~~~~~elkkEie~IKk 119 (370)
T PF02994_consen 103 LKKRIKELKKEIENIKK 119 (370)
T ss_dssp ---------------H-
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44455666666666663
No 370
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.68 E-value=1.9e+02 Score=24.94 Aligned_cols=16 Identities=38% Similarity=0.684 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 032236 71 LSVEVEQLRSEFQELR 86 (144)
Q Consensus 71 LnsEVeqLRsEfqeLR 86 (144)
|.+||+.|.+.....+
T Consensus 69 L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 69 LAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 371
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=33.67 E-value=1.7e+02 Score=23.45 Aligned_cols=88 Identities=30% Similarity=0.339 Sum_probs=53.2
Q ss_pred CCCCCCCcCCccchhhHHhHhHH-----hHHHHH---HHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 032236 8 STPSVPKKENITPVGSKIAELNE-----SRAELL---NRIQGLKQ--DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQ 77 (144)
Q Consensus 8 ~~p~~~rk~~~~pi~~ki~ELne-----Sr~ELL---~Rvq~LK~--DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeq 77 (144)
+.|..++.++-..+.=-+-|||. +|.|.+ +|=..||- =-|+-|+|==+| +.||.--|.-|..||++
T Consensus 17 ~~~~~d~lsDd~LvsmSVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Q----k~eLE~~k~~L~qqv~~ 92 (135)
T KOG4196|consen 17 SGEGGDRLSDDELVSMSVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQ----KHELEKEKAELQQQVEK 92 (135)
T ss_pred CCCCCCCcCHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 45555777777777777888886 344433 23333443 134444443333 57888888888888999
Q ss_pred HHHHHHHHH---HHHHHhHHHHhhh
Q 032236 78 LRSEFQELR---STLQQQQDDVTAS 99 (144)
Q Consensus 78 LRsEfqeLR---ttLqqQ~e~~ta~ 99 (144)
|+.|...|+ ++++.-.+.+..+
T Consensus 93 L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 93 LKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888877765 3444444444433
No 372
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.63 E-value=2.3e+02 Score=21.99 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=19.4
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNW 49 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~W 49 (144)
+-.-++...|.+--+.++-+.+.+...|..-
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~ 39 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEI 39 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666677777777777653
No 373
>PRK14156 heat shock protein GrpE; Provisional
Probab=33.53 E-value=1.5e+02 Score=23.87 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRs 80 (144)
..+...|+.|+.++..|+.++ -..+.|+-.+|+.+..|++..+.
T Consensus 30 ~~~~~~l~~l~~e~~elkd~~----lR~~AEfeN~rKR~~rE~e~~~~ 73 (177)
T PRK14156 30 TPEKSELELANERADEFENKY----LRAHAEMQNIQRRANEERQQLQR 73 (177)
T ss_pred cccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999887654 56677888888888888888763
No 374
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=33.48 E-value=94 Score=24.91 Aligned_cols=44 Identities=20% Similarity=0.464 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 43 KQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 43 K~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
|.+|+.=+..|.+||+..+.|++.++ -|+..++.-|..|-+..-
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~----~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLR----RELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhh
Confidence 66888889999999999999988765 477788888887766543
No 375
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=33.31 E-value=2.5e+02 Score=22.44 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 032236 58 KIYRDELTDMKKTLSVEVEQL 78 (144)
Q Consensus 58 KtYr~EL~dLK~~LnsEVeqL 78 (144)
..++.+...+......||+..
T Consensus 166 ~~a~~~fe~is~~~k~El~rF 186 (224)
T cd07623 166 DRGQKEFEEISKTIKKEIERF 186 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555
No 376
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=33.22 E-value=83 Score=25.26 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 58 KIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 58 KtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
..+.+|++.|-.++|.=+++|+.-+.+++.....
T Consensus 214 ~~~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~ 247 (457)
T TIGR01386 214 SRAPAELRELAQSFNAMLGRLEDAFQRLSQFSAD 247 (457)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999888888877777654443
No 377
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.13 E-value=2.3e+02 Score=21.90 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=15.0
Q ss_pred hHHhHhHHhHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQ 44 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~ 44 (144)
.-=..|...|.+|-+||++|-.
T Consensus 54 ~vs~~l~~tKkhLsqRId~vd~ 75 (126)
T PF07889_consen 54 QVSESLSSTKKHLSQRIDRVDD 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334567778888888887743
No 378
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.13 E-value=1.4e+02 Score=19.27 Aligned_cols=22 Identities=50% Similarity=0.673 Sum_probs=12.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 032236 69 KTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 69 ~~LnsEVeqLRsEfqeLRttLq 90 (144)
.+|-.|++.|+.+++.|+..|+
T Consensus 22 ~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 22 DSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4455566666666666655543
No 379
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=33.11 E-value=1.7e+02 Score=20.26 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhhhcccc
Q 032236 76 EQLRSEFQELRSTLQQQQDDVTASLRNLGLQ 106 (144)
Q Consensus 76 eqLRsEfqeLRttLqqQ~e~~ta~L~nL~lq 106 (144)
..||..|+++...-++....+++.+..+|-.
T Consensus 30 ~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~ 60 (111)
T PF09537_consen 30 PELKSLFQEFAQERQQHAEELQAEIQELGGE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5788888888888888888889999999843
No 380
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=33.01 E-value=1.4e+02 Score=22.92 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 032236 42 LKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV 73 (144)
Q Consensus 42 LK~DLq~WRskLDtQVKtYr~EL~dLK~~Lns 73 (144)
-+++..+|-.++..|=+.|..|...|.+-+|.
T Consensus 36 d~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~ 67 (109)
T PF11690_consen 36 DKKEAYDFIDKVVDQHQRYCDERRKLRKKIQD 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999888877765
No 381
>PRK14153 heat shock protein GrpE; Provisional
Probab=32.97 E-value=1.5e+02 Score=24.35 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 032236 51 SKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDV 96 (144)
Q Consensus 51 skLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ 96 (144)
..++..+...+.++.+|+..+ -.+..||.-+|-+..++++..
T Consensus 36 ~~~~~ei~~l~~e~~elkd~~----lR~~AEfeN~rKR~~kE~e~~ 77 (194)
T PRK14153 36 STADSETEKCREEIESLKEQL----FRLAAEFDNFRKRTAREMEEN 77 (194)
T ss_pred ccchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
No 382
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=32.95 E-value=1.7e+02 Score=23.91 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 41 GLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 41 ~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
...++|..=..+|..||.....||.+==+.|+.||++|.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le 140 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLE 140 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888777666666666666654
No 383
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=32.86 E-value=2e+02 Score=21.03 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=13.6
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHH
Q 032236 25 IAELNESRAELLNRIQGLKQDLQNW 49 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~W 49 (144)
|.=|-.+|.-|..-+..|+..++.+
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~ 92 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQEL 92 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666665555544
No 384
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=32.71 E-value=4.6e+02 Score=27.53 Aligned_cols=83 Identities=28% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHhHhHHh---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032236 24 KIAELNES---RAELLNRIQGLKQDLQNWRSKLDTQVKIYRD---ELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 24 ki~ELneS---r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~---EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~t 97 (144)
+|+.||.| +..-++|++++|..|..=--.+++|.+.-.+ ||..++-.|-.|=..|-++++-|+.| -+-...+-
T Consensus 489 ~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~~LE 567 (1195)
T KOG4643|consen 489 QIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-SQNGALLE 567 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHHHHHH
Q ss_pred hhhhhccccc
Q 032236 98 ASLRNLGLQD 107 (144)
Q Consensus 98 a~L~nL~lqd 107 (144)
-..-++++++
T Consensus 568 q~~n~lE~~~ 577 (1195)
T KOG4643|consen 568 QNNNDLELIH 577 (1195)
T ss_pred HhhhHHHHHH
No 385
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=32.50 E-value=1.3e+02 Score=18.82 Aligned_cols=61 Identities=15% Similarity=0.393 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDM----KKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dL----K~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
.++.+.+.++.++..=+.+++. |...-..|.+. ...+...++.|...+..|...+......
T Consensus 38 ~~~~~~~~~~~ei~~~~~~l~~-l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~ 102 (105)
T PF00435_consen 38 EQLKKHKELQEEIESRQERLES-LNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777764444443 22333333222 4556667777777777777777665543
No 386
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=32.33 E-value=1.2e+02 Score=24.13 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 032236 34 ELLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskL 53 (144)
+.+.++..|.+++..+|.++
T Consensus 179 ~~~~~i~~L~kei~~L~~~~ 198 (221)
T PF14335_consen 179 ERLEQIEKLEKEIAKLKKKI 198 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 387
>PRK14155 heat shock protein GrpE; Provisional
Probab=32.21 E-value=2.9e+02 Score=22.81 Aligned_cols=93 Identities=9% Similarity=0.166 Sum_probs=58.8
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHhhHHHHH-HHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE------------LTDMKKTLSVEVEQ-LRSEF 82 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E------------L~dLK~~LnsEVeq-LRsEf 82 (144)
.....+..+|.+|...-.+|-.|..-+.-|++|.|-+...+++..+.- +-+|..+|++--.. .-.++
T Consensus 13 ~~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~ 92 (208)
T PRK14155 13 FEADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPAV 92 (208)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHH
Confidence 344667788999999999999999999999999999998887665542 22344444431100 00112
Q ss_pred HHHHHHHHHhHHHHhhhhhhcccccC
Q 032236 83 QELRSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 83 qeLRttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
..+..-++-=...+-..|.++|+.-.
T Consensus 93 ~~i~~Gvemi~k~~~~~L~k~GV~~I 118 (208)
T PRK14155 93 KNFIIGVEMTEKELLGAFERNGLKKI 118 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcee
Confidence 33333333333345567888888753
No 388
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=32.19 E-value=2.6e+02 Score=24.86 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=18.2
Q ss_pred HhHHhHHHHHHHHHHHH--HHHHHHHhhh
Q 032236 27 ELNESRAELLNRIQGLK--QDLQNWRSKL 53 (144)
Q Consensus 27 ELneSr~ELL~Rvq~LK--~DLq~WRskL 53 (144)
+++.-+.+.+..|...+ ++|..+|.+.
T Consensus 4 ~~~~~~~~~~~~i~~~~~~~~l~~~r~~~ 32 (339)
T PRK00488 4 DLEELVEEALAAIAAASDLEALEALRVKY 32 (339)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45555666677777665 7888888764
No 389
>PRK14151 heat shock protein GrpE; Provisional
Probab=32.19 E-value=2e+02 Score=23.06 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
..|-.+|..|++++..|+.+ ....+.|+-.+|+....|++..+
T Consensus 23 ~~l~~~i~~le~e~~el~d~----~lR~~Ae~eN~rkR~~kE~e~~~ 65 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQ----SLRAAADLQNVRRRAEQDVEKAH 65 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677888888887643 45667778888888888887766
No 390
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=32.16 E-value=1.6e+02 Score=21.60 Aligned_cols=60 Identities=23% Similarity=0.394 Sum_probs=28.3
Q ss_pred HHHHHhhhHHHHHHHHHHH-------------HHHHHHhhHHHHHHHHHHHHHHHH---HHHhHHHHhhhhhhccc
Q 032236 46 LQNWRSKLDTQVKIYRDEL-------------TDMKKTLSVEVEQLRSEFQELRST---LQQQQDDVTASLRNLGL 105 (144)
Q Consensus 46 Lq~WRskLDtQVKtYr~EL-------------~dLK~~LnsEVeqLRsEfqeLRtt---LqqQ~e~~ta~L~nL~l 105 (144)
|-.|-..|+.|++.|...- |+-=..|+++|..+...-+.|... |..||..+...|..|+-
T Consensus 24 in~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~ 99 (116)
T PF05064_consen 24 INKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEK 99 (116)
T ss_dssp -------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666665432 222346788888888777777654 45677778888888763
No 391
>PF15463 ECM11: Extracellular mutant protein 11
Probab=32.14 E-value=2.2e+02 Score=21.44 Aligned_cols=61 Identities=10% Similarity=0.296 Sum_probs=40.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 44 QDLQNWRSKLDTQVKIYRDELTDM---KKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 44 ~DLq~WRskLDtQVKtYr~EL~dL---K~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
-.+..|-..-|-=++.|..=+..| |..+.-=++.+-.++.+=-..|+.+...+...|..+.
T Consensus 69 ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk 132 (139)
T PF15463_consen 69 LSFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMK 132 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899998888888877655544 4455555666666666666666677666666665544
No 392
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=32.01 E-value=1.5e+02 Score=19.47 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 032236 74 EVEQLRSEFQELRSTLQQQQDDV 96 (144)
Q Consensus 74 EVeqLRsEfqeLRttLqqQ~e~~ 96 (144)
.|+++..++.+++..+.......
T Consensus 88 ~i~a~~~~~~~~~~~l~~~~~~~ 110 (125)
T PF13801_consen 88 AIEALLEEIREAQAELRQERLEH 110 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777776666665543
No 393
>PRK09343 prefoldin subunit beta; Provisional
Probab=32.00 E-value=2.1e+02 Score=21.17 Aligned_cols=18 Identities=28% Similarity=0.219 Sum_probs=7.3
Q ss_pred HHHHHHhhHHHHHHHHHH
Q 032236 65 TDMKKTLSVEVEQLRSEF 82 (144)
Q Consensus 65 ~dLK~~LnsEVeqLRsEf 82 (144)
.++++.|+..++-+..++
T Consensus 70 ~e~~~~l~~r~E~ie~~i 87 (121)
T PRK09343 70 TKVEKELKERKELLELRS 87 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 394
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=31.93 E-value=1.5e+02 Score=21.41 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=20.0
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQN 48 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~ 48 (144)
|..|-+.|++++.-=+.|=.+|..|+..+.+
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~ 36 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDLESNLPD 36 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4566677777777666666666666665544
No 395
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=31.77 E-value=2e+02 Score=26.45 Aligned_cols=27 Identities=19% Similarity=0.523 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032236 39 IQGLKQDLQNWRSKLDTQVKIYRDELT 65 (144)
Q Consensus 39 vq~LK~DLq~WRskLDtQVKtYr~EL~ 65 (144)
|..|.+++.+|-.+|++....|.....
T Consensus 431 i~~l~~~i~~~~~rl~~~e~~~~~qf~ 457 (483)
T COG1345 431 IKSLDKDIKSLDKRLEAAEERYKTQFN 457 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 396
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.65 E-value=84 Score=21.79 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=17.2
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNW 49 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~W 49 (144)
+.+..+..+|..|+..+..+-.++..++..+.-|
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555555555544443
No 397
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=31.64 E-value=3.7e+02 Score=23.85 Aligned_cols=20 Identities=5% Similarity=0.190 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhHH
Q 032236 55 TQVKIYRDELTDMKKTLSVE 74 (144)
Q Consensus 55 tQVKtYr~EL~dLK~~LnsE 74 (144)
..+..++..|..+...|+.-
T Consensus 300 ~~L~~~~qrLd~L~~RL~~a 319 (432)
T TIGR00237 300 NKLALQQLQFEKLEKRKQAA 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555556666655555443
No 398
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.60 E-value=5e+02 Score=26.72 Aligned_cols=54 Identities=28% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhHHHHhhhhhhc
Q 032236 46 LQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQ---ELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 46 Lq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfq---eLRttLqqQ~e~~ta~L~nL 103 (144)
+.+-+..+|+|...++.-.. .|..|.++|.++.+ ...+.|+.|.+.+.+.|++.
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~----~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEK----ELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44566777777777765322 23334444443333 33556667777777776643
No 399
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.60 E-value=2.3e+02 Score=21.51 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032236 36 LNRIQGLKQDLQNWRSKLDTQVKIYR 61 (144)
Q Consensus 36 L~Rvq~LK~DLq~WRskLDtQVKtYr 61 (144)
+.|++.=|..+..==.+|-+.+...+
T Consensus 39 l~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 39 LARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666665566665554443
No 400
>PRK14141 heat shock protein GrpE; Provisional
Probab=31.59 E-value=1.2e+02 Score=25.11 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=41.0
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
.-.|++..-.+-.-|-..|-.+|..|++.+..++.++ ---+.|+-.+|+....|++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~i~~le~e~~elkd~~----lR~~Ae~eN~RKR~~kE~e~~~ 76 (209)
T PRK14141 18 ANNPVDREAKPYEMEDDPEPDPLEALKAENAELKDRM----LRLAAEMENLRKRTQRDVADAR 76 (209)
T ss_pred ccCccccccccccCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456665544333333667778888998888876544 5667788888888888888877
No 401
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.53 E-value=1.5e+02 Score=21.35 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=32.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 29 NESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 29 neSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
.+.+.+|+.+|..|...|+.-..+++..- .|.+.|++|=+=|..-|.-
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk---------------~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVK---------------EENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 46688899999888888888777776543 3556666665554444433
No 402
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=31.50 E-value=3.7e+02 Score=23.78 Aligned_cols=70 Identities=24% Similarity=0.465 Sum_probs=51.0
Q ss_pred chhhHHhHhHHhHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----------------------HH
Q 032236 20 PVGSKIAELNESRA--------ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDM----------------------KK 69 (144)
Q Consensus 20 pi~~ki~ELneSr~--------ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dL----------------------K~ 69 (144)
.++..+..|.+.|. -|.+|+..+...+..=|+.+-+-++.|++.|-.. |-
T Consensus 136 al~~AL~~l~~~R~~EG~~L~~~l~~~L~~ie~~v~~v~~~~P~~~~~~~~~l~~ri~~~~~~~d~~rl~qE~al~a~K~ 215 (290)
T COG1561 136 ALEEALDDLIEMREREGAALKADLLQRLDAIEELVEKVESLMPEILEWYRERLVARLNEAQDQLDEDRLEQEVALLAQKA 215 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHh
Confidence 34556666666664 4889999999999999999999999999876543 22
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 032236 70 TLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRttL 89 (144)
-++-|+.+|+|-|.+.|..|
T Consensus 216 DI~EEldRL~sHv~~~~~iL 235 (290)
T COG1561 216 DIAEELDRLKSHVKEFRNIL 235 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777766666
No 403
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.50 E-value=6.1e+02 Score=26.29 Aligned_cols=58 Identities=28% Similarity=0.469 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYR---DELTDMKKTL---SVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr---~EL~dLK~~L---nsEVeqLRsEfqeLRttLqq 91 (144)
+|-..|+.+.+.|-+.+..+-+|+..|+ .++.-++..| +.|++-+.++|++++.+|+.
T Consensus 452 ele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 452 ELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555443 3555555554 56777777888888887543
No 404
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.37 E-value=2.1e+02 Score=20.82 Aligned_cols=26 Identities=42% Similarity=0.787 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 61 RDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 61 r~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
++++.+| ..+|..++.++..|+.+|+
T Consensus 64 ~~dv~~L----~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 64 RDDVHDL----QLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHH----HHHHHHHHhHHHHHHHHHH
Confidence 4555444 4456677777777776664
No 405
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=31.35 E-value=4.2e+02 Score=29.03 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=18.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 50 RSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 50 RskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
|.++..+.+....+|..||+-|..+++.+|
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r 829 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLR 829 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666665555
No 406
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.24 E-value=5.3e+02 Score=26.33 Aligned_cols=77 Identities=25% Similarity=0.442 Sum_probs=42.2
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLS----------VEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln----------sEVeqLRsEfqeLRttLq 90 (144)
+.-.|.-|..-|+-|-.-|-+|--++..-|.+-+ -|-..+.+|.+|+...+ -|.|.||-++-+|+...+
T Consensus 871 lq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~-~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mYk 949 (961)
T KOG4673|consen 871 LQTELASLESIRSSLAEELVKLTAECEKLREKAD-RVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMYK 949 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHH
Confidence 3334444444444333333333333333333322 23334455555555544 367889999999999999
Q ss_pred HhHHHHhh
Q 032236 91 QQQDDVTA 98 (144)
Q Consensus 91 qQ~e~~ta 98 (144)
.|++.+-+
T Consensus 950 ~QIdeLl~ 957 (961)
T KOG4673|consen 950 EQIDELLN 957 (961)
T ss_pred HHHHHHHh
Confidence 99987644
No 407
>PRK10325 heat shock protein GrpE; Provisional
Probab=31.23 E-value=2.3e+02 Score=23.02 Aligned_cols=21 Identities=10% Similarity=0.420 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 032236 59 IYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 59 tYr~EL~dLK~~LnsEVeqLR 79 (144)
..+.|.-.+|+....|++.++
T Consensus 64 R~~Ae~eN~rkR~~ke~~~~~ 84 (197)
T PRK10325 64 RVKAEMENLRRRTELDIEKAH 84 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 408
>PRK14163 heat shock protein GrpE; Provisional
Probab=31.20 E-value=3.2e+02 Score=22.92 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
.+|-.+|..|++.+..|+.++ ...+.|+-.+|+....|++..+
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~----lR~~AEfeN~rkR~~kE~e~~~ 85 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADL----QRLQAEYQNYRRRVERDRVTVK 85 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888999888887554 5677888888888888888776
No 409
>PF13270 DUF4061: Domain of unknown function (DUF4061)
Probab=31.19 E-value=1.6e+02 Score=21.58 Aligned_cols=59 Identities=17% Similarity=0.367 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
=+=+.+|+.+-.+|..--..|+.+.......-.+=++..+..|.+|-+.+..|-..|++
T Consensus 32 ~eqM~~IReqQE~LarlHfeL~~~~~~~~e~~~~~~~~~~~nm~~L~~~Le~Ls~sIek 90 (90)
T PF13270_consen 32 MEQMTKIREQQEKLARLHFELDSEQEEFREDSESNKTQSDENMDKLFSNLEQLSNSIEK 90 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34577888888888888888887776654443455677788899999999988888764
No 410
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=31.14 E-value=2.5e+02 Score=21.63 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=42.4
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHhhHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELT----DMKKTLSVEVEQL 78 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~----dLK~~LnsEVeqL 78 (144)
|...|.+-.+.+.+.-.+...-+..|.++|..-..=+..++.+-. .++.....|++++
T Consensus 63 I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~ 124 (184)
T PRK13455 63 IRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARR 124 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888999999999999988888888666554 4444444444444
No 411
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.08 E-value=1.9e+02 Score=20.21 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=9.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 032236 70 TLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRttLq 90 (144)
.|+.++..++.++..++..|+
T Consensus 105 ~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 105 KLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555444444
No 412
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.04 E-value=3.6e+02 Score=23.47 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=51.9
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLD---TQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLD---tQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e 94 (144)
+.-=++.|.+++..+..+=.-|+.|-..+..--++++ -.+...+.|| +.|+.++..|+..+.+-...|.++.-
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~ei----k~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEI----KKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445778888888888887777777665554444333 3333333333 45778899999999998888888877
Q ss_pred HHh
Q 032236 95 DVT 97 (144)
Q Consensus 95 ~~t 97 (144)
++.
T Consensus 109 Amq 111 (265)
T COG3883 109 AMQ 111 (265)
T ss_pred HHH
Confidence 653
No 413
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=30.86 E-value=2.4e+02 Score=21.49 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=50.0
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----hHHHHHHH--------HHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL----SVEVEQLR--------SEFQELRST 88 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L----nsEVeqLR--------sEfqeLRtt 88 (144)
|...+.+-...+.+.-..+..-+..|.++|..-..-+..++.+-...+..+ +.|++++. .+.+..+..
T Consensus 54 I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~ 133 (175)
T PRK14472 54 IQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDV 133 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777888888888999999988888888887766655444 44444433 344444455
Q ss_pred HHHhHHHHh
Q 032236 89 LQQQQDDVT 97 (144)
Q Consensus 89 LqqQ~e~~t 97 (144)
|+++..++.
T Consensus 134 l~~~i~~lA 142 (175)
T PRK14472 134 LRNEVADLA 142 (175)
T ss_pred HHHHHHHHH
Confidence 555544433
No 414
>PRK11281 hypothetical protein; Provisional
Probab=30.85 E-value=5.1e+02 Score=26.55 Aligned_cols=41 Identities=34% Similarity=0.336 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHhH
Q 032236 53 LDTQVKIYRDELTDMKKTLSVEV----------EQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 53 LDtQVKtYr~EL~dLK~~LnsEV----------eqLRsEfqeLRttLqqQ~ 93 (144)
|+..+++=|+=|.+|-++||+.+ +||.+-..+++++|++|+
T Consensus 405 l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~q~Ql~~~~~~l~~~L~~~l 455 (1113)
T PRK11281 405 LLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQQI 455 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444555555555544 677777788888888775
No 415
>PF13315 DUF4085: Protein of unknown function (DUF4085)
Probab=30.81 E-value=1.5e+02 Score=24.90 Aligned_cols=40 Identities=25% Similarity=0.503 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHhhHHHHHHH
Q 032236 40 QGLKQDLQNWRSKLDTQV----KIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 40 q~LK~DLq~WRskLDtQV----KtYr~EL~dLK~~LnsEVeqLR 79 (144)
..||+.+..|...-+..| ..|++..-.+++.|-.-|.+|+
T Consensus 79 ~~l~~~~~ew~~~~~~~~~~~~~~Y~e~~~sI~~~lp~~v~ql~ 122 (208)
T PF13315_consen 79 EKLKKAITEWCEDYEKRVKRLCQAYYEYYNSIKEKLPQNVQQLF 122 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 578888866666655555 4688888888888888888876
No 416
>PRK14148 heat shock protein GrpE; Provisional
Probab=30.78 E-value=3e+02 Score=22.55 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=54.0
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------H----HHHHHHhhHHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE--------L----TDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E--------L----~dLK~~LnsEVeqLRsEfqeL 85 (144)
+..+..+|.+|.+.-.+|-+|+.-+.-|..|.|-++.-++...+.- | -+|..+|++--. -.++..+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~--~~~~~~l 119 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVK--LEEAIAM 119 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--chhHHHH
Confidence 4556677888888888888888888888888888877666544332 1 223333332100 0123344
Q ss_pred HHHHHHhHHHHhhhhhhcccccC
Q 032236 86 RSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 86 RttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
..-++-=...+-..|..+|+.-.
T Consensus 120 ~~Gv~mi~k~l~~vL~k~Gv~~I 142 (195)
T PRK14148 120 KEGIELTAKMLVDILKKNGVEEL 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEe
Confidence 44444444456677888998863
No 417
>PRK06798 fliD flagellar capping protein; Validated
Probab=30.69 E-value=2.6e+02 Score=25.11 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 52 KLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 52 kLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
.|+.|++.....+.++...|..--++|+..|-.|-+++.+
T Consensus 383 ~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~ 422 (440)
T PRK06798 383 SIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAA 422 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777777777778888888888777654
No 418
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=30.67 E-value=1.8e+02 Score=20.02 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
|-.||-.++..|+++|-+-|...-| |.|.++ +.+-++|.++.-++|-+.+
T Consensus 13 s~~eL~~~l~elk~elf~LRfq~at---------gql~n~--~~ir~~RrdIARikTil~e 62 (67)
T CHL00154 13 TDSEISEEIIKTKKELFDLRLKKAT---------RQNFKP--HLFKHKKHRLAQLLTLLSS 62 (67)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---------CcccCh--HHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998854332 333333 4556666666666665543
No 419
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=30.63 E-value=3.9e+02 Score=23.74 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=5.0
Q ss_pred hHHHHhhhhhhc
Q 032236 92 QQDDVTASLRNL 103 (144)
Q Consensus 92 Q~e~~ta~L~nL 103 (144)
+++...+.|..|
T Consensus 375 ~l~~~~~~l~~l 386 (432)
T TIGR00237 375 QFGTLVGKLNAL 386 (432)
T ss_pred HHHHHHHHHHhC
Confidence 334444444444
No 420
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=30.61 E-value=4.7e+02 Score=24.99 Aligned_cols=75 Identities=24% Similarity=0.353 Sum_probs=39.0
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDT------QVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDt------QVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
.++...+++|.--=.+....+.+-..++-+|.+.|.. ++|.-..-|-+=.+-|-.|..+|+.+|+.+|..|.++
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3334444444433334444455555667777766542 2222222223333444567788888888888655544
Q ss_pred H
Q 032236 93 Q 93 (144)
Q Consensus 93 ~ 93 (144)
.
T Consensus 196 t 196 (546)
T KOG0977|consen 196 T 196 (546)
T ss_pred H
Confidence 3
No 421
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=30.61 E-value=2.2e+02 Score=25.27 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=23.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 29 NESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 29 neSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
.-+|..+|.||..|+ -+|+.-..+..+| -+++..|++-..++|.++
T Consensus 219 ~Kcr~rkLdrisrLE-----------dkv~~lk~~n~~L----~~~l~~l~~~v~e~k~~V 264 (279)
T KOG0837|consen 219 SKCRKRKLDRISRLE-----------DKVKTLKIYNRDL----ASELSKLKEQVAELKQKV 264 (279)
T ss_pred HHHHHHHHHHHHHHH-----------hhhhhhhhhhhhH----HHHHHHHHHHHHHHHHHH
Confidence 345666666665554 4555544444332 344445555555544433
No 422
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=30.55 E-value=2.8e+02 Score=22.17 Aligned_cols=69 Identities=23% Similarity=0.418 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH-----------------------------HHHHHHHHHHHhhHHHHHHHHHHH
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKI-----------------------------YRDELTDMKKTLSVEVEQLRSEFQ 83 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKt-----------------------------Yr~EL~dLK~~LnsEVeqLRsEfq 83 (144)
+.|.+|+..||.|+..-|..+++=+.. -++-|.+-|++|--+|+.|+++..
T Consensus 26 srl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e 105 (131)
T KOG1760|consen 26 SRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELE 105 (131)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888877664433 344567778888889999998888
Q ss_pred HHHHHHHHhHHHHhhhhh
Q 032236 84 ELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 84 eLRttLqqQ~e~~ta~L~ 101 (144)
.+.+.+.+=.--+-++|+
T Consensus 106 ~I~~~m~~LK~~LYaKFg 123 (131)
T KOG1760|consen 106 SISARMDELKKVLYAKFG 123 (131)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 877776655544444443
No 423
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=30.50 E-value=5.4e+02 Score=25.43 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 032236 75 VEQLRSEFQELRSTLQQQQDDVTASLRNLGL 105 (144)
Q Consensus 75 VeqLRsEfqeLRttLqqQ~e~~ta~L~nL~l 105 (144)
+..+...+..+...+......+...|...|+
T Consensus 733 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f 763 (1047)
T PRK10246 733 LQTLQQQDVLEAQRLQKAQAQFDTALQASVF 763 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3334444444555555555555566666655
No 424
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=30.43 E-value=4.1e+02 Score=24.00 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=21.9
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHH
Q 032236 26 AELNESRAELLNRIQGLKQDLQNWRSKLDTQ-VKIYRD 62 (144)
Q Consensus 26 ~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQ-VKtYr~ 62 (144)
..|.---..|..|+|.|+.++..-..|++-| |..|+.
T Consensus 55 ~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q 92 (333)
T KOG1853|consen 55 DQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ 92 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333456777777777777777666654 444543
No 425
>PF10874 DUF2746: Protein of unknown function (DUF2746); InterPro: IPR022704 The proteins in this entry are uncharacterised.
Probab=30.33 E-value=1.5e+02 Score=20.53 Aligned_cols=33 Identities=15% Similarity=0.467 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 032236 42 LKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVE 74 (144)
Q Consensus 42 LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsE 74 (144)
|+-||-.-+..+...+..-+..+++|+..|++|
T Consensus 13 mRDDiD~l~~~v~~~~~~~~rDigglReelrtE 45 (57)
T PF10874_consen 13 MRDDIDELRDRVREGFREMRRDIGGLREELRTE 45 (57)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555566666666666555
No 426
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=30.32 E-value=3.7e+02 Score=25.08 Aligned_cols=55 Identities=15% Similarity=0.358 Sum_probs=44.9
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HhhHHHHHHH
Q 032236 25 IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKK---TLSVEVEQLR 79 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~---~LnsEVeqLR 79 (144)
..+.-+-=.+|++|+.++..++..-...|++=+++|..=++.|.+ .|-.-++.|+
T Consensus 368 a~eIa~~a~~Lydkl~~f~~~~~klG~~L~~a~~~y~~A~~~L~~Grgnli~~a~~~k 425 (475)
T PRK10361 368 AQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFR 425 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 445556668899999999999999999999999999999888876 5666666554
No 427
>PRK14157 heat shock protein GrpE; Provisional
Probab=30.22 E-value=1.9e+02 Score=24.48 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
.....|+.+|..|++++..|+.++ .-.+.|.-..|+....|++.++
T Consensus 77 ~~~~~~~~~l~~le~e~~e~kd~l----lR~~AEfeNyRKR~~rE~e~~~ 122 (227)
T PRK14157 77 SDSDDTLTPLGQAKKEAAEYLEAL----QRERAEFINYRNRTQKEQDRFR 122 (227)
T ss_pred cccchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999987654 4566777777777777777766
No 428
>PHA03332 membrane glycoprotein; Provisional
Probab=30.13 E-value=4.7e+02 Score=27.75 Aligned_cols=66 Identities=14% Similarity=0.315 Sum_probs=36.4
Q ss_pred hHHhHhHHhHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQ-------DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~-------DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
+.|++++++=..+=.||++|.. -+..--..||.-++.-..-+++|...+|.-+-+.++-|.-|++-
T Consensus 891 aaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 891 AATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433 34444555666666666666666666666666666666555555
No 429
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=30.03 E-value=1.9e+02 Score=20.11 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=35.9
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L 71 (144)
-|...+.+..+.+.+.-........-|.++|...+.-++..+.+....+...
T Consensus 34 ~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~ 85 (132)
T PF00430_consen 34 KIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEI 85 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777788888777777776666655555443
No 430
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=29.92 E-value=3.4e+02 Score=23.64 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=22.4
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYR 61 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr 61 (144)
....++.|++-..+|-.+|..|+..|..=. +...|.+.+.
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-k~~~k~~~~~ 279 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP-KKKNKLKELE 279 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHH
Confidence 345666677777777777777766654433 3344444333
No 431
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=29.85 E-value=5.8e+02 Score=25.53 Aligned_cols=71 Identities=34% Similarity=0.363 Sum_probs=0.0
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---------------
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQN---WRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEF--------------- 82 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~---WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEf--------------- 82 (144)
+.+++.+|..+=.+|-.|.-+.++.|.- =+.-|-.|+..-+.+| .+-++-|++||+-+
T Consensus 167 L~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~l----e~q~tlv~~LR~YvGeq~p~~~~~~~we~ 242 (739)
T PF07111_consen 167 LTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEEL----EAQVTLVEQLRKYVGEQVPPEVHSQAWEP 242 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHhhhCCcccccHHHHH
Q ss_pred --HHHHHHHHHhHHH
Q 032236 83 --QELRSTLQQQQDD 95 (144)
Q Consensus 83 --qeLRttLqqQ~e~ 95 (144)
++|..|++.=+++
T Consensus 243 Er~~L~~tVq~L~ed 257 (739)
T PF07111_consen 243 EREELLETVQHLQED 257 (739)
T ss_pred HHHHHHHHHHHHHHH
No 432
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=29.80 E-value=65 Score=25.33 Aligned_cols=28 Identities=21% Similarity=0.629 Sum_probs=17.6
Q ss_pred HHHHHHHHHHh---hhHHHHHHHHHHHHHHH
Q 032236 41 GLKQDLQNWRS---KLDTQVKIYRDELTDMK 68 (144)
Q Consensus 41 ~LK~DLq~WRs---kLDtQVKtYr~EL~dLK 68 (144)
.+=+|++.||. .+|.|++.-|.-|..||
T Consensus 96 ~iY~d~~aWk~hr~~ID~eIe~Lq~Ki~~LK 126 (145)
T PF12548_consen 96 VIYQDPKAWKDHRLHIDHEIETLQDKIKNLK 126 (145)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578999974 46666666555555544
No 433
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=29.75 E-value=1.8e+02 Score=19.67 Aligned_cols=37 Identities=14% Similarity=0.348 Sum_probs=29.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 68 KKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 68 K~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
-.....=++++..-|+.|...|-..+++..+.|-+|+
T Consensus 5 t~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE 41 (54)
T PF06825_consen 5 TAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLE 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3344445678899999999999999999988888876
No 434
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=29.72 E-value=18 Score=33.59 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKK 69 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~ 69 (144)
.+...+.+|+..++..+.|..+++.
T Consensus 136 ~~~~~k~~le~~~~~L~~E~~~~~~ 160 (722)
T PF05557_consen 136 ELEQLKRKLEEEKRRLQREKEQLLE 160 (722)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 435
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=29.67 E-value=2.5e+02 Score=21.21 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032236 29 NESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 29 neSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL 85 (144)
.....-|...|.. +|..+-..+..+++++...+......+....+.+..|
T Consensus 37 ~~~~~~Le~~i~~-------~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 86 (158)
T PF09769_consen 37 VRPPSYLEEQIRK-------AREFLQPYYSWAQDELNTVKSKYYNAERSVTSTIASL 86 (158)
T ss_pred cCCchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555444 4555555666666666666666666666666665554
No 436
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=29.67 E-value=3e+02 Score=22.24 Aligned_cols=13 Identities=8% Similarity=0.516 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 032236 38 RIQGLKQDLQNWR 50 (144)
Q Consensus 38 Rvq~LK~DLq~WR 50 (144)
++...++++..++
T Consensus 112 ~l~~a~~~~~R~~ 124 (327)
T TIGR02971 112 ELETAQREVDRYR 124 (327)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 437
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=29.64 E-value=2.7e+02 Score=21.69 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=18.6
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032236 26 AELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE 63 (144)
Q Consensus 26 ~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E 63 (144)
.+-.+.+.+.-........-|.++|..-..-+...+.+
T Consensus 72 ~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~e 109 (181)
T PRK13454 72 AAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAE 109 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555566665555555444443
No 438
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=29.63 E-value=2.8e+02 Score=21.77 Aligned_cols=17 Identities=12% Similarity=0.507 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 032236 52 KLDTQVKIYRDELTDMK 68 (144)
Q Consensus 52 kLDtQVKtYr~EL~dLK 68 (144)
.|+.+...-+..+++|.
T Consensus 84 ~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 84 NLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444455443
No 439
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.55 E-value=98 Score=26.48 Aligned_cols=51 Identities=18% Similarity=0.414 Sum_probs=37.0
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 032236 25 IAELNESRAELLNRIQGLKQDLQ----NWRSKLDTQVKIYRDELTDMKKTLSVEV 75 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq----~WRskLDtQVKtYr~EL~dLK~~LnsEV 75 (144)
|++..++..|.=.=|..+-.++- +-|+.+..-+..|+.+|..|+.-+-..+
T Consensus 38 l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 38 LSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTT 92 (220)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666555555555553 5699999999999999988877666655
No 440
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=29.53 E-value=2.9e+02 Score=21.92 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=30.1
Q ss_pred hhhHHhHhHHhHHHHHHH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 032236 21 VGSKIAELNESRAELLNR-----IQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~R-----vq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L 71 (144)
+......++..+..+..- |.-|.+.+..|...+..--|.|..|.-..+..|
T Consensus 63 ~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l 118 (219)
T PF08397_consen 63 ISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDEL 118 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444455555555554 556777788888777766666666655444433
No 441
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=29.34 E-value=1.3e+02 Score=21.56 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYRDEL-TDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL-~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
.|..+|+.|+.... .++.++..+..+| .+....+..=+..| -+..|||.+=|.-+..
T Consensus 4 ~l~~~~~~L~~~~~----~l~~~i~~~~~~l~~~~~~~v~~hI~lL-heYNeiKD~gQ~Lig~ 61 (83)
T PF07061_consen 4 SLEAEIQELKEQIE----QLEKEISELEAELIEDPEKIVKRHIKLL-HEYNEIKDIGQGLIGL 61 (83)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHhhcccCHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence 34555555555322 5566666665553 33333333334333 4778888877665553
No 442
>COG2770 ResE FOG: HAMP domain [Signal transduction mechanisms]
Probab=29.09 E-value=76 Score=21.56 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=31.8
Q ss_pred HHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032236 37 NRIQGLKQ--DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 37 ~Rvq~LK~--DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL 85 (144)
+|+..+.+ .+-+|..++..+ -++|++.|.+++|.=+++++.-+..|
T Consensus 35 ~~l~~~~~~~~~g~~~~~i~~~---~~dEi~~L~~a~~~m~~~l~~~~~~l 82 (83)
T COG2770 35 RRLADLAQNLALGDLSAEIPQP---MLDEIGELAKAFNRMRDSLQRALSAL 82 (83)
T ss_pred HHHHHHHHHHHcCCccccCCcc---chhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444443 344666666666 68999999999999888888766543
No 443
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.74 E-value=4.8e+02 Score=27.66 Aligned_cols=66 Identities=23% Similarity=0.369 Sum_probs=47.0
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEF 82 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEf 82 (144)
.++.-++..|.+|..-...+=..+..|..++.+-+.+..-+.+.|+.=. .+...++.++..+++++
T Consensus 935 ~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~-~~~~E~k~~~~~~k~~~ 1000 (1293)
T KOG0996|consen 935 RNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAE-ESLKEIKKELRDLKSEL 1000 (1293)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888889999999999999888888886432 22233344444444333
No 444
>PRK07342 peptide chain release factor 2; Provisional
Probab=28.71 E-value=3.5e+02 Score=24.15 Aligned_cols=53 Identities=11% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH----H-HHHHHHHHHHHHHHHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV----E-VEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Lns----E-VeqLRsEfqeLRttLqq 91 (144)
+++.++..|+.-+..|+ +++....++.+|..-++. | .+.+..|+..|+..|.+
T Consensus 17 ~~~ke~~~l~~~v~~~~-----~~~~~~~~~~~l~el~~~e~D~el~~~a~~e~~~l~~~l~~ 74 (339)
T PRK07342 17 KLMRERQQLDDSINGIN-----HLEQTLNDNIELIAMGEEEGDKSIVEDAEKTIRDLKDEIDR 74 (339)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776 355555566666555532 1 22344555555555554
No 445
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.66 E-value=3.5e+02 Score=27.19 Aligned_cols=70 Identities=17% Similarity=0.365 Sum_probs=34.0
Q ss_pred CcCCccchhhHHhHhHHhHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHH
Q 032236 14 KKENITPVGSKIAELNESRA-----ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLS---VEVEQLRSEFQ 83 (144)
Q Consensus 14 rk~~~~pi~~ki~ELneSr~-----ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln---sEVeqLRsEfq 83 (144)
.+.++-|.+..-.++-.-|- .++.-|.-=-.+|+.=|.+|+..+..|+.-+.+||+.+- .|+++|+.++.
T Consensus 61 ~~~~~~p~~~s~~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 61 NIENLDPYDASCSGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred cccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 35566666664444443332 111112222235555566666666666666666665442 34444444443
No 446
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=28.63 E-value=1.4e+02 Score=28.81 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=33.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHH
Q 032236 48 NWRSKLDTQVKIYRDELTDMKKTLSVEVEQL---RSEFQELRSTLQ 90 (144)
Q Consensus 48 ~WRskLDtQVKtYr~EL~dLK~~LnsEVeqL---RsEfqeLRttLq 90 (144)
..+.+|..+.+..+.|+..|+..|+++-+.. +.||.+++...-
T Consensus 437 le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg 482 (742)
T PRK05561 437 LEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFG 482 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 4577889999999999999999999987654 566666655443
No 447
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=28.40 E-value=2.4e+02 Score=25.85 Aligned_cols=50 Identities=28% Similarity=0.509 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhHH-----------------HHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 41 GLKQDLQNWRSKLDT-----------------QVKIYRDE-------LTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 41 ~LK~DLq~WRskLDt-----------------QVKtYr~E-------L~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
.+|+|-.|||..|+. +++..-.| ++.-.+.||++++-|-++|.++..+|-
T Consensus 217 t~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~ls 290 (384)
T KOG0972|consen 217 TLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLS 290 (384)
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999987753 11122222 334467899999998888877655543
No 448
>PRK14145 heat shock protein GrpE; Provisional
Probab=28.31 E-value=3.4e+02 Score=22.36 Aligned_cols=86 Identities=15% Similarity=0.349 Sum_probs=53.8
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE------------LTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E------------L~dLK~~LnsEVeqLRsEfqeL 85 (144)
+.-+..++.+|.+.-.+|-.++..+.-|++|.|-++.-.+...+.- +-+|..+|.+ -.+...+
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~-----~~~~~~l 121 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS-----SGDYNSL 121 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc-----cccHHHH
Confidence 3445667777777777888888888889999988887666544432 2233334432 1223334
Q ss_pred HHHHHHhHHHHhhhhhhcccccC
Q 032236 86 RSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 86 RttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
+.-++-=...+...|...|+.-.
T Consensus 122 ~~Gv~mi~k~l~~vL~k~GVe~I 144 (196)
T PRK14145 122 KEGIELIYRQFKKILDKFGVKEI 144 (196)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEe
Confidence 44444444456677888998764
No 449
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=28.19 E-value=3.8e+02 Score=22.92 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=36.4
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L 71 (144)
-|.|+..+|.+....|..|+..|+..-..+.. ..+.+...+....=|..|..+.
T Consensus 262 kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~-~~~~~~~~~~re~~lq~L~~ay 315 (353)
T cd09236 262 KYDKDLDAVSEEAQEQEEILQQIEVANKAFLQ-SRKGDPATKERERALQSLDLAY 315 (353)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccChhHHHHHHHHHHHHHHH
Confidence 48899999999999999999999987776632 1223444444444444444444
No 450
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=28.17 E-value=2e+02 Score=19.71 Aligned_cols=41 Identities=7% Similarity=0.232 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHH--HHhhH------HHHHHHHHHHHHHHHHHHh
Q 032236 52 KLDTQVKIYRDELTDMK--KTLSV------EVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 52 kLDtQVKtYr~EL~dLK--~~Lns------EVeqLRsEfqeLRttLqqQ 92 (144)
-|...+..++.||-.|| .+... .+-+.|.++.-+.|-|.+.
T Consensus 16 eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ek 64 (69)
T PRK14549 16 EREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQREK 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 35566777778888877 33333 7777778888777777654
No 451
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=28.08 E-value=84 Score=20.49 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 032236 73 VEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 73 sEVeqLRsEfqeLRttLqqQ~ 93 (144)
-||.-|..-+.||+..+.+|+
T Consensus 22 dEV~~L~~NL~EL~~e~~~qq 42 (42)
T PF11464_consen 22 DEVATLEENLRELQDEIDEQQ 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 588899999999999988874
No 452
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=27.94 E-value=2.6e+02 Score=20.92 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=34.3
Q ss_pred hhHHhHhHHhHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 032236 22 GSKIAELNESRAELLNRIQ----GLKQDLQNWRSKLDTQVKIYRDELTDMKKTLS 72 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq----~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln 72 (144)
+.-|.+|+.-|+--..-+- ..+..|...|.+-|..+..|+.-+.++.....
T Consensus 2 ~~lv~~LQ~ERg~s~~~l~s~~~~~~~~l~~qr~~tD~a~~~~~~~~~~~~~~~~ 56 (247)
T PF08376_consen 2 SDLVHALQQERGLSAAYLASPGKQFRAELKAQRAATDRAIAELRRALADIDDSDS 56 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4456666666665555554 34678888999999999999888887544433
No 453
>PHA01750 hypothetical protein
Probab=27.93 E-value=1.9e+02 Score=21.20 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=18.8
Q ss_pred HHHhhHHHHHHHHHHHHHHH---HHHHhHHHHh
Q 032236 68 KKTLSVEVEQLRSEFQELRS---TLQQQQDDVT 97 (144)
Q Consensus 68 K~~LnsEVeqLRsEfqeLRt---tLqqQ~e~~t 97 (144)
+.-.++|+.-||.|+++++- -|++|..++.
T Consensus 37 keIV~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 37 KEIVNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44567788888888888762 2444444433
No 454
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=27.79 E-value=1.8e+02 Score=18.95 Aligned_cols=22 Identities=36% Similarity=0.512 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 032236 31 SRAELLNRIQGLKQDLQNWRSK 52 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRsk 52 (144)
|-.||...+..|+++|-+-|..
T Consensus 7 s~~eL~~~l~~l~~elf~Lr~q 28 (57)
T cd00427 7 SDEELQEKLDELKKELFNLRFQ 28 (57)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888888777633
No 455
>PRK14146 heat shock protein GrpE; Provisional
Probab=27.78 E-value=2.4e+02 Score=23.40 Aligned_cols=35 Identities=9% Similarity=0.215 Sum_probs=18.2
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQ 56 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQ 56 (144)
...|.+|...-.+|-.++..+.-|+.|.|-+....
T Consensus 60 ~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE 94 (215)
T PRK14146 60 QKELDNAKKEIESLKDSWARERAEFQNFKRRSAQE 94 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544433
No 456
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=27.72 E-value=3.8e+02 Score=22.79 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=18.4
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLD 54 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLD 54 (144)
-..+.+++.--..|=+-|..+..|++.-|.+++
T Consensus 44 ~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 44 NKALEALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555556666666666665554
No 457
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=27.71 E-value=2.4e+02 Score=20.36 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=33.5
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK 68 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK 68 (144)
|...+.+-.+.+.+.-......+..|.+||..-..-+..++.+....+
T Consensus 41 I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~ 88 (140)
T PRK07353 41 IRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLA 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777888888888888877776666666554443
No 458
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=27.62 E-value=2e+02 Score=19.48 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHh
Q 032236 73 VEVEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 73 sEVeqLRsEfqeLRttLqqQ~e~~t 97 (144)
...+.|..+|+..-...+.-+..+.
T Consensus 71 ~~~~KL~~df~~~l~~fq~~q~~~~ 95 (102)
T PF14523_consen 71 LQREKLSRDFKEALQEFQKAQRRYA 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666665555544433
No 459
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=27.61 E-value=2.8e+02 Score=21.14 Aligned_cols=80 Identities=9% Similarity=0.144 Sum_probs=48.5
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HhhHHHHHHH--------HHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKK----TLSVEVEQLR--------SEFQELRST 88 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~----~LnsEVeqLR--------sEfqeLRtt 88 (144)
|...|.+..+.+.+.-......+.-|++||..-..-+...+.+....+. ..+.|+++++ .+.+..+..
T Consensus 55 I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~ 134 (174)
T PRK07352 55 ILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQ 134 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777888888888887777777766554443 3344444433 344445555
Q ss_pred HHHhHHHHhhhh
Q 032236 89 LQQQQDDVTASL 100 (144)
Q Consensus 89 LqqQ~e~~ta~L 100 (144)
|+.|..++...+
T Consensus 135 l~~qi~~la~~~ 146 (174)
T PRK07352 135 LRREAAELAIAK 146 (174)
T ss_pred HHHHHHHHHHHH
Confidence 555555444333
No 460
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.48 E-value=3.6e+02 Score=23.97 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032236 41 GLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQ 83 (144)
Q Consensus 41 ~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfq 83 (144)
.||.++..-|.||+--++. +.||-+=-+.|.+|++.++..++
T Consensus 132 d~ke~~ee~kekl~E~~~E-keeL~~eleele~e~ee~~erlk 173 (290)
T COG4026 132 DLKEDYEELKEKLEELQKE-KEELLKELEELEAEYEEVQERLK 173 (290)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888776654 33443333444455554443333
No 461
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=27.40 E-value=1.8e+02 Score=18.88 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=23.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 47 QNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 47 q~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
+++|-.+...|-.|+++|.+ .+++ =+........+|..|..+
T Consensus 3 HerkR~IElk~~elrd~LEe--~g~~--~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 3 HERKREIELKCLELRDELEE--QGYS--EEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp -HHHHHHHHHHHHHHHHHHH--HT----HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCC--HHHHHHHHHHHHHHHHhc
Confidence 35667888888888888887 4432 123334445555555443
No 462
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=27.02 E-value=4.1e+02 Score=22.92 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=38.2
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHH---------HHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 032236 26 AELNESRAELLNRIQGLKQDLQN---------WRSKLDTQVKIYRDELTDMKKTLSVEVE 76 (144)
Q Consensus 26 ~ELneSr~ELL~Rvq~LK~DLq~---------WRskLDtQVKtYr~EL~dLK~~LnsEVe 76 (144)
++.+.--.+|-+|+.+-++-|.+ .|++|+--...|+.+|--+|.-|..-|.
T Consensus 46 ~~~~~K~deLedr~~se~KRLRsrR~~~AEn~rrs~L~kv~~l~QARidRvK~HiDdkia 105 (228)
T PF06721_consen 46 EKMNVKFDELEDRISSEQKRLRSRRINYAENNRRSALEKVASLYQARIDRVKAHIDDKIA 105 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45555667888888888888776 5677888888888888888887755443
No 463
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=27.00 E-value=2.4e+02 Score=20.19 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=24.9
Q ss_pred hhhHHhHhHHhHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRI---QGLKQDLQNWRSKLDTQVKIYRDELTDMKK 69 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rv---q~LK~DLq~WRskLDtQVKtYr~EL~dLK~ 69 (144)
|...|..|......|++-. +.++..|.+=........+..+..|..|+.
T Consensus 18 i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~ 69 (151)
T cd00179 18 ISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEE 69 (151)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444545555555432 345555555555555555555555555554
No 464
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=26.94 E-value=3.6e+02 Score=22.15 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 032236 57 VKIYRDELTDMKKTLS 72 (144)
Q Consensus 57 VKtYr~EL~dLK~~Ln 72 (144)
+..++..|..++..|+
T Consensus 193 l~~~~~~Ld~l~~rL~ 208 (319)
T PF02601_consen 193 LEQQQQRLDELKQRLK 208 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 465
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=26.81 E-value=5.7e+02 Score=24.61 Aligned_cols=77 Identities=19% Similarity=0.360 Sum_probs=49.5
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHH-HHH--HHhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDL-----QNWRSKLDTQVKIYRDELT-DMK--KTLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DL-----q~WRskLDtQVKtYr~EL~-dLK--~~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
..+|.+|+-.-..=|.|++.=|.-| .-=-|-++.--+.||+||. +|- .++|+.|+.||...++=-.++|.++
T Consensus 351 QkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqREL 430 (593)
T KOG4807|consen 351 QKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQREL 430 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHH
Confidence 3567777666666666666555332 2234667777888999886 333 3689999999977766555666665
Q ss_pred HHHhh
Q 032236 94 DDVTA 98 (144)
Q Consensus 94 e~~ta 98 (144)
+-++.
T Consensus 431 eVLSE 435 (593)
T KOG4807|consen 431 EVLSE 435 (593)
T ss_pred HHHHH
Confidence 54443
No 466
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=26.69 E-value=4e+02 Score=22.61 Aligned_cols=56 Identities=18% Similarity=0.295 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSV---EVEQLRSEFQELR 86 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Lns---EVeqLRsEfqeLR 86 (144)
|=.||-..+.--.-+|..||-.-.-.++.+++++..|+.-|+. |=+..|..+|.|.
T Consensus 2 s~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777888888899999999999999999999999888775 3445555555555
No 467
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.57 E-value=1.1e+02 Score=22.04 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=31.7
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDM 67 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dL 67 (144)
-+-..|.+|+++=..|++||...|.+-. +|+.+=+.-+.=|+.|
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~----kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENE----KLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4556788999999999999999998754 4555544444445555
No 468
>PRK14146 heat shock protein GrpE; Provisional
Probab=26.51 E-value=2.8e+02 Score=22.95 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 37 NRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
..+..|+..+..|+.++ -.-+.|+-.+|+....|++.++
T Consensus 61 ~~l~~l~~e~~el~d~~----lR~~AdfeN~rkR~~kE~e~~~ 99 (215)
T PRK14146 61 KELDNAKKEIESLKDSW----ARERAEFQNFKRRSAQEFVSIR 99 (215)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666555332 3445556666666666666555
No 469
>PHA00728 hypothetical protein
Probab=26.42 E-value=75 Score=25.71 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032236 72 SVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 72 nsEVeqLRsEfqeLRttLqq 91 (144)
-+||||||.|-.||+..|.+
T Consensus 4 ~teveql~keneelkkkla~ 23 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAE 23 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHH
Confidence 47999999999999877653
No 470
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=26.42 E-value=3e+02 Score=21.13 Aligned_cols=51 Identities=8% Similarity=0.144 Sum_probs=37.4
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L 71 (144)
|...|.+....+.+.-......++.|.++|.....-+...+.+-...+..+
T Consensus 54 I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~ 104 (173)
T PRK13453 54 INRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQI 104 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777788888888899999888888888777765544443
No 471
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=26.33 E-value=3.8e+02 Score=22.30 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=36.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 47 QNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 47 q~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
.+==++++..|.....=|.+++..|..|-+ .-..+++|-..++.|+.++..-..|+-
T Consensus 21 ~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~-~~~~lk~l~~~~~~~~~~l~hl~~nvP 77 (243)
T PF07160_consen 21 KDTLSKIDQEVSAIEELLNDIEQELQREEE-ALPKLKELMESSEEQQKKLQHLKENVP 77 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333457788888888888888887777764 445666776777777666655544443
No 472
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=26.24 E-value=5.3e+02 Score=25.15 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHHHHHH---------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhHHHHhhhh
Q 032236 33 AELLNRI---------QGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL---RSTLQQQQDDVTASL 100 (144)
Q Consensus 33 ~ELL~Rv---------q~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL---RttLqqQ~e~~ta~L 100 (144)
++||++| +.|..-|+-|+..++-+.+.|.+==.+|...| .++++.-.-++.- ...-++-.++....|
T Consensus 86 T~LLG~l~qL~~~~Sl~~l~s~l~~~na~~~ga~~~~~~lS~~ledaL-~aaq~~ad~l~q~~~~~~~Aq~~l~~aq~~l 164 (593)
T PRK15374 86 TLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTAL-GEAQEATDLYEASIKKTDTAKSVYDAAEKKL 164 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4566665 45566788999999999999975333333222 3344333333333 333333344444445
Q ss_pred hhc
Q 032236 101 RNL 103 (144)
Q Consensus 101 ~nL 103 (144)
..|
T Consensus 165 ~~l 167 (593)
T PRK15374 165 TQA 167 (593)
T ss_pred HHH
Confidence 444
No 473
>KOG2479 consensus Translation initiation factor 3, subunit d (eIF-3d) [Translation, ribosomal structure and biogenesis]
Probab=26.21 E-value=28 Score=33.01 Aligned_cols=10 Identities=70% Similarity=1.212 Sum_probs=9.2
Q ss_pred HHHhhhHHHH
Q 032236 48 NWRSKLDTQV 57 (144)
Q Consensus 48 ~WRskLDtQV 57 (144)
+||.|||||-
T Consensus 409 dWRqKLdtQR 418 (549)
T KOG2479|consen 409 DWRQKLDTQR 418 (549)
T ss_pred cHHHhhhhhc
Confidence 7999999994
No 474
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.19 E-value=3.9e+02 Score=22.33 Aligned_cols=56 Identities=16% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHhHHHH
Q 032236 37 NRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSE-FQELRSTLQQQQDDV 96 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsE-fqeLRttLqqQ~e~~ 96 (144)
.|++.++.++..|..+.+ .++.+-.++-+..+.||+....| ..++|.++..=+++.
T Consensus 159 dK~~~a~~Ev~e~e~k~~----~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ 215 (234)
T cd07665 159 DKLQQAKDEIAEWESRVT----QYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETL 215 (234)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=26.10 E-value=2.7e+02 Score=20.54 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=23.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032236 69 KTLSVEVEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 69 ~~LnsEVeqLRsEfqeLRttLqqQ~e~~t 97 (144)
.+||+.|.|+.++.+.+|++.+.=++...
T Consensus 34 ~~L~~kvdql~~dv~~a~aaa~aAk~EA~ 62 (85)
T PRK09973 34 QTLNAKIARLEQDMKALRPQIYAAKSEAN 62 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999998877666543
No 476
>PRK00182 tatB sec-independent translocase; Provisional
Probab=26.09 E-value=3.6e+02 Score=21.91 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 38 RIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 38 Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
|+=.+=++|-.|-.. +|.-+.+.+..++.| |..||.|||.-|++
T Consensus 25 rLP~~~r~lg~~ir~-------~R~~~~~~k~el~~E---lg~e~~elrk~l~~ 68 (160)
T PRK00182 25 RLPRLIEDVRAALLA-------ARTAINNAKQQLDGD---FGEEFDEFRKPLNQ 68 (160)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HhhHHHHHHHHHHH
Confidence 444455556666443 334444444444444 33456666555543
No 477
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=26.06 E-value=1.4e+02 Score=20.68 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032236 57 VKIYRDELTDMKKTLSVEVEQLRSEFQELR 86 (144)
Q Consensus 57 VKtYr~EL~dLK~~LnsEVeqLRsEfqeLR 86 (144)
|.=.+.|=+..=++|+.||+.|+.+-.||.
T Consensus 12 i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 12 ILFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344566667777889999999998877764
No 478
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=26.02 E-value=2.3e+02 Score=20.05 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 61 RDELTDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 61 r~EL~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
..-|-+--.-|=.|+|.+|.-|.++-++
T Consensus 30 ~~~ld~~~~ClL~e~e~i~~~f~~~q~~ 57 (70)
T PF10372_consen 30 IQTLDEDDCCLLCEFEEIREKFLDIQTL 57 (70)
T ss_dssp HHHTT-TT--GGGGHHHHHHHHHHHHHH
T ss_pred HHHhccCCceechhHHHHHHHHHHHHHH
Confidence 3333344455556677777777666553
No 479
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=25.84 E-value=3.9e+02 Score=25.09 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=9.8
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHH
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQN 48 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~ 48 (144)
.++++++.-.++-.++..++.++..
T Consensus 230 ~~~~l~~~i~~l~~~~~~~~~~l~~ 254 (759)
T PF01496_consen 230 AIKELEEEIEELEKELEELEEELKK 254 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333333333333333
No 480
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=25.82 E-value=1.6e+02 Score=23.34 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HhhhHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 35 LLNRIQGLKQDLQNW-RSKLDTQVKIYR-DELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 35 LL~Rvq~LK~DLq~W-RskLDtQVKtYr-~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
++.++..|...+... ..+++..+..+. .|++.|-.++|.-+++|+..++..|.-+..=-.++.+.|+.+
T Consensus 85 ~~~pl~~l~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~n~~~~~l~~~~~~~~~~~~~~sHelrtPL~~i 155 (356)
T PRK10755 85 ITRPLAELQKELEARTADNLTPIAIHSSTLEIEAVTSALNQLVSRLTSTLDQERLFTADVAHELRTPLAGI 155 (356)
T ss_pred HHhHHHHHHHHHHhcCcccCCccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHH
No 481
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=25.75 E-value=2.7e+02 Score=20.41 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
++..|..+ +..+..+++..+.++.+||..|.
T Consensus 75 e~e~Y~~~----~~~i~~~i~~~k~~ie~lk~~L~ 105 (139)
T PF05615_consen 75 ERENYEQL----NEEIEQEIEQAKKEIEELKEELE 105 (139)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666544 44444455555555555555443
No 482
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=25.74 E-value=90 Score=22.39 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032236 34 ELLNRIQGLKQDLQNWRS 51 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRs 51 (144)
+||+||..|.+++..-+.
T Consensus 75 ~LLd~i~~Lr~el~~L~~ 92 (101)
T PRK10265 75 TLLDEIAHLKQENRLLRQ 92 (101)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555544333
No 483
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=25.72 E-value=81 Score=21.25 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=15.7
Q ss_pred ccchhhHHhHhHHhHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNR 38 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~R 38 (144)
+.-|+..|++|..-|..|.++
T Consensus 21 iedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 21 IEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345778888888888887765
No 484
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=25.58 E-value=4.4e+02 Score=23.95 Aligned_cols=53 Identities=15% Similarity=0.369 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHH
Q 032236 37 NRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKT---LSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~---LnsEVeqLRsEfqeLRttLq 90 (144)
.||++|-- |.+.-..++....+|..|--.|+.. |..-|+.+|..+.++|..|.
T Consensus 54 ervrklh~-~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~e 109 (389)
T PF06216_consen 54 ERVRKLHI-ISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIE 109 (389)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666643 6778889999999999998766543 33344444444444444443
No 485
>PRK10404 hypothetical protein; Provisional
Probab=25.49 E-value=2.8e+02 Score=20.41 Aligned_cols=28 Identities=4% Similarity=0.242 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 61 RDELTDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 61 r~EL~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
..++..||..+..=+..+|.-+.++...
T Consensus 33 ~e~~~~lR~r~~~~L~~ar~~l~~~~~~ 60 (101)
T PRK10404 33 DQKYVELKARAEKALDDVKKRVSQASDS 60 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445555555555555555444444443
No 486
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=25.27 E-value=2.3e+02 Score=20.95 Aligned_cols=35 Identities=31% Similarity=0.556 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 032236 62 DELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDV 96 (144)
Q Consensus 62 ~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ 96 (144)
++|+.-=.+||+-|+||.++...+|...|--+++.
T Consensus 28 dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~ea 62 (78)
T COG4238 28 DQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEA 62 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
No 487
>PRK10807 paraquat-inducible protein B; Provisional
Probab=25.23 E-value=5.5e+02 Score=23.78 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=0.0
Q ss_pred hhhHHhHhHHhHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGL-----KQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEV-----EQLRSEFQELRSTLQ 90 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~L-----K~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEV-----eqLRsEfqeLRttLq 90 (144)
+.+.+.+|.++=..+|.||..| =.++..==..++.=+++.+..+..+...+.++. .+|+.=+++++++|+
T Consensus 411 ~ps~l~~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~ 490 (547)
T PRK10807 411 VSGGLAQIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQ 490 (547)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ----------------HhHHHHhhhhhhc
Q 032236 91 ----------------QQQDDVTASLRNL 103 (144)
Q Consensus 91 ----------------qQ~e~~ta~L~nL 103 (144)
+|+..+..+|+.|
T Consensus 491 ~~~~~s~~~~~l~~tl~~l~~~~r~lr~l 519 (547)
T PRK10807 491 GFQPGSPAYNKMVADMQRLDQVLRELQPV 519 (547)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=25.21 E-value=2.9e+02 Score=20.49 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHhHHHHhhhhhhcccc
Q 032236 50 RSKLDTQVKIYRDELTDMKKTLSVEVEQL-------RSEFQELRSTLQQQQDDVTASLRNLGLQ 106 (144)
Q Consensus 50 RskLDtQVKtYr~EL~dLK~~LnsEVeqL-------RsEfqeLRttLqqQ~e~~ta~L~nL~lq 106 (144)
|..+...+..+..||-+|-.+|=.|--.. |-.++.=...|.+|+......|..|-.|
T Consensus 10 r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~q 73 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQ 73 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=25.20 E-value=2.4e+02 Score=19.66 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 43 KQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 43 K~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
|.|++.==.+|..-...|......-. -+.|+..++.||...=.+|..+++++..++.
T Consensus 7 ~~ev~~sl~~l~~~~~~~~~~~~~~~--~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 7 KDEVQSSLDRLESLYRRWQRLRSDTS--SSEELKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC--CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=25.15 E-value=3.2e+02 Score=21.99 Aligned_cols=40 Identities=20% Similarity=0.508 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 032236 57 VKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDV 96 (144)
Q Consensus 57 VKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ 96 (144)
++.++.++..|......|+-.|+..+..+..-|-+.+..+
T Consensus 7 L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~i 46 (244)
T PF00956_consen 7 LKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREI 46 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 491
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=25.14 E-value=4.5e+02 Score=22.76 Aligned_cols=65 Identities=22% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
.+..++.....|-..++.+...+.. .+..++..-..+..+.-..|..+++++...+.+++..+..
T Consensus 54 q~~~~~~~~~~L~~ql~~~~~~~~~---~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~ 118 (372)
T PF04375_consen 54 QLQQLQQQLQALQQQLQQLQQQLEA---QQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQLAA 118 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=25.11 E-value=2.2e+02 Score=19.02 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHH
Q 032236 29 NESRAELLNRIQGLKQDLQNWRSK----LDTQVKIYRDELTD 66 (144)
Q Consensus 29 neSr~ELL~Rvq~LK~DLq~WRsk----LDtQVKtYr~EL~d 66 (144)
.+.|..|-.++..++..+.++... +..++..+.+++.+
T Consensus 25 ~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e 66 (74)
T PF12732_consen 25 KETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEETADEAKE 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.07 E-value=3.7e+02 Score=23.27 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=0.0
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL 85 (144)
+......|..+......|=.+|+.-|.||..=+-+|.+ |...|-+...|-|.|..|++.+
T Consensus 178 ~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s--------Lq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 178 LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS--------LQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhcChHHHHHHHHHHHHHHHH
No 494
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=24.98 E-value=3.7e+02 Score=21.69 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=0.0
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 25 IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
+.-+...-..++.-++....-..+|=+..-.++..|. ++..=-+.|..|+.+|+.+..+++ .++++.+.+...|.
T Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~l~~en~~L~~e~~~l~~~~~~~~-~l~~en~~L~~lL~ 110 (276)
T PRK13922 36 LSPVRQVVGDVVSPVQRVVNAPREFVSGVFESLASLF-DLREENEELKKELLELESRLQELE-QLEAENARLRELLN 110 (276)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
No 495
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.85 E-value=90 Score=22.01 Aligned_cols=47 Identities=26% Similarity=0.401 Sum_probs=0.0
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~L 71 (144)
|+.-|..|...=..|...+..|+..+ ..|..++..|+.....|+.+|
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~----~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEI----EELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhhhHHHHHHHhh
No 496
>PRK10337 sensor protein QseC; Provisional
Probab=24.82 E-value=1.3e+02 Score=24.64 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQV--KIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQV--KtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
.+.++..|...+..-.......+ ....+|++.|-.++|.=+++|+..+...|.-+..--.++.+.|..+
T Consensus 185 ~~~pl~~l~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i 255 (449)
T PRK10337 185 ELAPLKKLALALRMRDPDSETPLNATGVPSEVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAAL 255 (449)
T ss_pred hhchHHHHHHHHHhhCcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
No 497
>PRK14140 heat shock protein GrpE; Provisional
Probab=24.75 E-value=3.9e+02 Score=21.85 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH----------------------------HHHHH
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR----------------------------SEFQE 84 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR----------------------------sEfqe 84 (144)
.+|-.+|..|++++..|+.++ ...+.|+-.+|+....|++..+ ..+..
T Consensus 40 ~~l~~~i~~l~~ei~elkd~~----lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~~~~~~~ 115 (191)
T PRK14140 40 DEEQAKIAELEAKLDELEERY----LRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEADDEQTKS 115 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHH
Q ss_pred HHHHHHHhHHHHhhhhhhcccc
Q 032236 85 LRSTLQQQQDDVTASLRNLGLQ 106 (144)
Q Consensus 85 LRttLqqQ~e~~ta~L~nL~lq 106 (144)
+..-++-=...+-..|..+|+.
T Consensus 116 i~~Gv~mi~k~l~~~L~k~GV~ 137 (191)
T PRK14140 116 LLKGVEMVHRQLLEALKKEGVE 137 (191)
T ss_pred HHHHHHHHHHHHHHHHHHCCCE
No 498
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.67 E-value=3.4e+02 Score=21.15 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=0.0
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
..+|..|..-...|-.+|..|+..|...+..+. .|+.|+..|.-+|.-+...+++
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e---------------~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANE---------------ILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
No 499
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=24.53 E-value=4.2e+02 Score=22.16 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHH-------------HHHHhhhHHHHHHHHHHHHHHHHHhh
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDL-------------QNWRSKLDTQVKIYRDELTDMKKTLS 72 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DL-------------q~WRskLDtQVKtYr~EL~dLK~~Ln 72 (144)
|.|+..+|...-..|..||..|+..-.++ +.+=.+|..=.+.|.+=.++|.+++.
T Consensus 252 f~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~~~~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~ 319 (342)
T cd08915 252 FDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNSNDSLDPREEALQDLEASYKKYLELKENLNEGSK 319 (342)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 500
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=24.51 E-value=4.1e+02 Score=21.97 Aligned_cols=82 Identities=11% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHhHHHHhhh
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEV-EQLRSEFQELRSTLQQQQDDVTAS 99 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEV-eqLRsEfqeLRttLqqQ~e~~ta~ 99 (144)
|...|.+-.+.+.+.-.....-++.+++++..-..=+...+.|-...+..+-.+. +........-+..|..++...-..
T Consensus 41 I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~ 120 (250)
T PRK14474 41 IANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKA 120 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q 032236 100 LRN 102 (144)
Q Consensus 100 L~n 102 (144)
|+.
T Consensus 121 L~~ 123 (250)
T PRK14474 121 LQQ 123 (250)
T ss_pred HHH
Done!