Query 032236
Match_columns 144
No_of_seqs 33 out of 35
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 18:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v71_A Nuclear distribution pr 95.8 0.1 3.5E-06 41.4 10.5 63 21-87 47-109 (189)
2 3ol1_A Vimentin; structural ge 95.2 0.34 1.2E-05 34.9 10.7 82 18-99 22-116 (119)
3 3s84_A Apolipoprotein A-IV; fo 94.6 0.27 9.2E-06 39.8 9.7 71 32-102 149-227 (273)
4 3s84_A Apolipoprotein A-IV; fo 94.5 0.6 2.1E-05 37.8 11.4 73 31-103 38-122 (273)
5 2v66_B Nuclear distribution pr 94.1 0.39 1.3E-05 35.5 8.9 54 33-90 6-59 (111)
6 3ol1_A Vimentin; structural ge 91.7 0.77 2.6E-05 33.1 7.3 75 23-98 20-97 (119)
7 3swk_A Vimentin; cytoskeleton, 91.3 2 6.9E-05 29.6 8.8 75 18-100 2-79 (86)
8 2nrj_A HBL B protein; enteroto 90.2 1.1 3.7E-05 37.2 7.8 72 22-93 122-196 (346)
9 3kqg_A Langerin, C-type lectin 90.0 0.47 1.6E-05 33.6 4.8 44 51-95 2-45 (182)
10 2eqb_B RAB guanine nucleotide 90.0 2.3 7.9E-05 30.9 8.5 45 55-100 19-63 (97)
11 3na7_A HP0958; flagellar bioge 89.9 4.4 0.00015 31.6 10.7 65 20-88 101-165 (256)
12 2a3d_A Protein (de novo three- 89.9 0.32 1.1E-05 33.9 3.7 61 31-91 3-69 (73)
13 3cvf_A Homer-3, homer protein 89.9 2 6.9E-05 30.1 7.9 32 20-51 10-41 (79)
14 2ocy_A RAB guanine nucleotide 89.6 4.8 0.00016 31.0 10.5 47 53-100 49-95 (154)
15 3s4r_A Vimentin; alpha-helix, 89.2 4.2 0.00014 28.3 9.5 21 24-44 10-30 (93)
16 3cl3_D NF-kappa-B essential mo 89.2 0.36 1.2E-05 37.0 3.8 76 21-97 4-79 (130)
17 3cve_A Homer protein homolog 1 89.2 2.7 9.3E-05 29.0 8.0 33 20-52 4-36 (72)
18 3r2p_A Apolipoprotein A-I; amp 89.2 2.7 9.1E-05 31.5 8.6 48 54-101 110-165 (185)
19 1gk6_A Vimentin; intermediate 88.7 2.1 7.1E-05 27.7 6.8 43 37-80 7-49 (59)
20 2xv5_A Lamin-A/C; structural p 88.5 3.6 0.00012 28.0 8.2 48 32-80 7-54 (74)
21 3mq7_A Bone marrow stromal ant 88.4 2.7 9.3E-05 31.9 8.1 38 56-93 72-112 (121)
22 3onj_A T-snare VTI1; helix, HA 88.3 2.3 7.8E-05 29.5 7.2 47 25-71 36-89 (97)
23 3i00_A HIP-I, huntingtin-inter 87.8 6.5 0.00022 28.9 10.5 66 20-85 12-80 (120)
24 2dfs_A Myosin-5A; myosin-V, in 86.4 4.2 0.00015 38.5 10.0 69 36-104 959-1036(1080)
25 2jee_A YIIU; FTSZ, septum, coi 86.0 1.5 5.1E-05 31.0 5.2 30 63-92 45-74 (81)
26 3r2p_A Apolipoprotein A-I; amp 85.8 9.1 0.00031 28.5 10.7 28 67-94 149-180 (185)
27 2qyw_A Vesicle transport throu 85.3 3.7 0.00013 28.7 7.0 33 39-71 65-101 (102)
28 1gk4_A Vimentin; intermediate 85.1 3.8 0.00013 27.8 6.8 41 38-79 34-74 (84)
29 3oja_B Anopheles plasmodium-re 84.8 4.5 0.00015 33.5 8.3 33 24-56 457-489 (597)
30 3mov_A Lamin-B1; LMNB1, B-type 84.3 5.6 0.00019 28.0 7.6 41 38-79 45-85 (95)
31 3tnu_B Keratin, type II cytosk 84.2 3.8 0.00013 29.3 6.8 16 51-66 71-86 (129)
32 3tnu_A Keratin, type I cytoske 83.6 4 0.00014 29.3 6.8 32 37-68 59-90 (131)
33 1x8y_A Lamin A/C; structural p 83.2 8.7 0.0003 26.2 8.2 59 21-80 15-77 (86)
34 1nfn_A Apolipoprotein E3; lipi 82.9 4.3 0.00015 31.1 7.0 22 83-104 142-163 (191)
35 2wt7_A Proto-oncogene protein 82.8 5.4 0.00018 25.7 6.5 40 47-90 22-61 (63)
36 3i00_A HIP-I, huntingtin-inter 82.1 11 0.00036 27.8 8.6 52 29-87 10-61 (120)
37 2yy0_A C-MYC-binding protein; 81.4 2.8 9.4E-05 27.0 4.6 29 73-101 19-50 (53)
38 3lof_A Heat shock 70 kDa prote 81.2 10 0.00035 25.8 7.8 68 24-91 3-77 (113)
39 1mz9_A Cartilage oligomeric ma 81.0 4.6 0.00016 24.9 5.4 35 34-72 6-40 (45)
40 1vcs_A Vesicle transport throu 80.5 6 0.0002 27.6 6.5 33 38-70 53-89 (102)
41 3na7_A HP0958; flagellar bioge 79.5 20 0.00067 27.9 11.4 27 19-45 14-40 (256)
42 2v4h_A NF-kappa-B essential mo 78.6 18 0.00062 26.8 10.1 68 20-87 28-104 (110)
43 1gs9_A Apolipoprotein E, APOE4 77.4 9.9 0.00034 28.7 7.4 19 83-101 142-160 (165)
44 3tnu_B Keratin, type II cytosk 77.3 17 0.00058 25.9 8.3 55 37-95 43-104 (129)
45 1l8d_A DNA double-strand break 77.2 14 0.00049 24.9 10.4 29 21-49 15-43 (112)
46 2l7b_A Apolipoprotein E, APO-E 76.9 15 0.00051 30.3 8.9 36 66-101 151-190 (307)
47 2v71_A Nuclear distribution pr 76.7 26 0.00088 27.7 12.5 57 45-105 60-116 (189)
48 2p4w_A Transcriptional regulat 76.2 23 0.00078 26.8 9.2 62 20-82 119-181 (202)
49 3oja_A Leucine-rich immune mol 76.0 22 0.00074 29.0 9.5 53 38-90 418-473 (487)
50 3oja_B Anopheles plasmodium-re 75.3 33 0.0011 28.3 11.3 37 18-54 458-494 (597)
51 2l7b_A Apolipoprotein E, APO-E 75.2 6.6 0.00023 32.4 6.3 62 42-103 101-170 (307)
52 1t2k_D Cyclic-AMP-dependent tr 75.1 12 0.00042 23.7 6.3 38 48-89 22-59 (61)
53 4dnd_A Syntaxin-10, SYN10; str 74.4 8.8 0.0003 28.2 6.2 29 26-54 63-91 (130)
54 3htk_A Structural maintenance 74.3 13 0.00044 23.0 7.4 8 61-68 25-32 (60)
55 2lem_A Apolipoprotein A-I; lip 74.2 2.1 7.2E-05 32.9 2.9 30 66-95 146-179 (216)
56 1nfn_A Apolipoprotein E3; lipi 74.0 8.6 0.00029 29.4 6.3 17 67-83 100-116 (191)
57 3v86_A De novo design helix; c 73.8 4.5 0.00015 23.7 3.6 23 59-85 4-26 (27)
58 3lay_A Zinc resistance-associa 73.7 26 0.0009 26.9 9.0 54 52-105 89-145 (175)
59 1s94_A S-syntaxin; three helix 72.9 25 0.00084 25.6 8.6 67 32-99 38-107 (180)
60 3tnu_A Keratin, type I cytoske 72.6 23 0.0008 25.3 10.0 55 37-95 45-106 (131)
61 3iv1_A Tumor susceptibility ge 72.0 22 0.00076 24.8 7.6 53 50-103 13-65 (78)
62 1gd2_E Transcription factor PA 71.7 6.8 0.00023 26.5 4.7 34 53-90 34-67 (70)
63 1t2k_D Cyclic-AMP-dependent tr 71.7 3.1 0.00011 26.5 2.8 34 19-52 25-58 (61)
64 1t3j_A Mitofusin 1; coiled coi 71.5 17 0.00059 26.2 7.0 58 41-98 29-92 (96)
65 3zrx_A AF1503 protein, osmolar 70.7 8.3 0.00029 23.3 4.6 42 60-101 35-76 (115)
66 4a17_U RPL35, 60S ribosomal pr 70.5 22 0.00076 26.4 7.6 31 25-55 7-38 (124)
67 2e7s_A RAB guanine nucleotide 70.5 12 0.00041 28.5 6.2 41 59-100 43-83 (135)
68 3mq9_A Bone marrow stromal ant 69.9 43 0.0015 27.2 12.6 82 22-103 372-469 (471)
69 3qne_A Seryl-tRNA synthetase, 69.4 48 0.0016 29.2 10.7 76 23-109 33-117 (485)
70 2fxo_A Myosin heavy chain, car 69.4 21 0.00072 25.5 7.1 26 23-48 34-59 (129)
71 1ez3_A Syntaxin-1A; three heli 69.4 23 0.0008 23.9 10.3 69 32-101 7-78 (127)
72 4etp_A Kinesin-like protein KA 68.6 15 0.0005 31.0 7.0 33 18-50 5-37 (403)
73 1gs9_A Apolipoprotein E, APOE4 68.0 20 0.00067 27.0 7.0 30 61-90 94-123 (165)
74 4ani_A Protein GRPE; chaperone 67.5 9.8 0.00033 30.3 5.5 48 14-61 57-104 (213)
75 3trt_A Vimentin; cytoskeleton, 67.5 22 0.00075 22.9 8.0 27 21-50 7-33 (77)
76 3va9_A Sensor histidine kinase 67.5 31 0.001 24.5 8.3 61 32-92 74-139 (164)
77 2lem_A Apolipoprotein A-I; lip 67.1 3.8 0.00013 31.5 2.9 36 66-101 80-119 (216)
78 2wt7_A Proto-oncogene protein 67.1 12 0.00039 24.1 4.8 19 53-71 42-60 (63)
79 2yy0_A C-MYC-binding protein; 66.7 11 0.00038 24.1 4.6 32 55-90 19-50 (53)
80 1wt6_A Myotonin-protein kinase 66.5 32 0.0011 24.4 7.9 17 70-86 56-72 (81)
81 3kqg_A Langerin, C-type lectin 65.9 3.7 0.00013 28.8 2.5 35 35-70 4-38 (182)
82 3iz5_c 60S ribosomal protein L 65.5 37 0.0013 25.2 7.9 55 25-79 8-71 (124)
83 4dnd_A Syntaxin-10, SYN10; str 65.4 27 0.00092 25.5 7.1 60 31-90 32-91 (130)
84 2dfs_A Myosin-5A; myosin-V, in 65.1 78 0.0027 30.0 11.8 21 35-55 982-1002(1080)
85 2jee_A YIIU; FTSZ, septum, coi 65.1 33 0.0011 24.1 9.3 11 70-80 38-48 (81)
86 1ci6_A Transcription factor AT 64.7 14 0.00048 23.9 4.9 37 49-89 24-60 (63)
87 3vem_A Helicase protein MOM1; 63.3 44 0.0015 24.9 8.9 53 42-94 37-93 (115)
88 3fhn_A Protein transport prote 63.3 11 0.00036 35.0 5.5 87 16-107 10-114 (706)
89 1jcd_A Major outer membrane li 63.0 23 0.0008 22.8 5.7 27 69-95 14-40 (52)
90 2xdj_A Uncharacterized protein 62.5 35 0.0012 23.5 7.8 27 28-54 18-44 (83)
91 1dkg_A Nucleotide exchange fac 62.3 27 0.00092 27.0 7.0 24 56-79 61-84 (197)
92 1x79_B RAB GTPase binding effe 62.3 44 0.0015 24.6 11.6 66 35-103 21-89 (112)
93 1go4_E MAD1 (mitotic arrest de 62.2 2 6.8E-05 31.2 0.5 78 14-91 10-93 (100)
94 3v2d_2 50S ribosomal protein L 62.0 32 0.0011 22.9 6.9 58 24-92 9-67 (72)
95 1vq8_V 50S ribosomal protein L 61.9 25 0.00086 23.4 5.9 55 26-92 7-64 (71)
96 2dq0_A Seryl-tRNA synthetase; 61.3 42 0.0014 28.7 8.6 82 23-109 31-115 (455)
97 2xu6_A MDV1 coiled coil; prote 61.3 9.4 0.00032 26.6 3.8 29 17-45 22-50 (72)
98 4e81_A Chaperone protein DNAK; 58.8 59 0.002 24.9 8.7 9 63-71 180-188 (219)
99 1joc_A EEA1, early endosomal a 58.8 21 0.00071 25.6 5.4 16 74-89 19-34 (125)
100 1ud0_A HSC70, 70 kDa heat-shoc 58.7 38 0.0013 22.6 6.5 60 29-88 3-69 (113)
101 3lss_A Seryl-tRNA synthetase; 57.7 97 0.0033 27.1 10.4 23 23-45 37-59 (484)
102 4emc_A Monopolin complex subun 57.5 32 0.0011 27.5 6.8 62 46-111 25-92 (190)
103 1wle_A Seryl-tRNA synthetase; 55.9 1E+02 0.0036 26.9 11.1 83 23-109 70-162 (501)
104 1fxk_A Prefoldin; archaeal pro 55.6 42 0.0014 22.2 10.6 76 21-96 6-102 (107)
105 1g6u_A Domain swapped dimer; d 55.4 37 0.0013 21.9 5.6 21 70-90 24-44 (48)
106 3fx7_A Putative uncharacterize 55.4 22 0.00074 25.6 5.0 30 75-104 11-40 (94)
107 1ses_A Seryl-tRNA synthetase; 54.8 61 0.0021 27.3 8.4 80 23-109 28-110 (421)
108 1jnm_A Proto-oncogene C-JUN; B 54.6 17 0.00059 23.1 4.0 38 48-89 22-59 (62)
109 3htk_A Structural maintenance 54.5 35 0.0012 20.9 7.7 8 60-67 45-52 (60)
110 2p2u_A HOST-nuclease inhibitor 54.4 51 0.0017 24.8 7.1 20 36-55 22-41 (171)
111 3swk_A Vimentin; cytoskeleton, 54.3 48 0.0017 22.6 10.2 50 48-98 14-63 (86)
112 2qyw_A Vesicle transport throu 54.3 51 0.0017 22.8 8.1 57 30-89 45-101 (102)
113 1vcs_A Vesicle transport throu 54.0 48 0.0016 22.9 6.5 59 30-91 34-92 (102)
114 3sja_C Golgi to ER traffic pro 53.6 44 0.0015 22.6 6.0 44 30-74 6-58 (65)
115 1ic2_A Tropomyosin alpha chain 53.1 47 0.0016 22.0 9.4 63 35-98 4-66 (81)
116 1gk4_A Vimentin; intermediate 52.8 49 0.0017 22.1 8.5 35 35-69 6-40 (84)
117 3ghg_A Fibrinogen alpha chain; 52.8 48 0.0016 30.4 7.8 29 20-48 46-75 (562)
118 3uux_B Mitochondrial division 51.9 13 0.00045 30.7 3.8 29 17-45 178-206 (242)
119 3swf_A CGMP-gated cation chann 51.3 22 0.00074 24.8 4.3 27 24-50 26-52 (74)
120 2v66_B Nuclear distribution pr 50.5 71 0.0024 23.3 8.3 57 45-105 7-63 (111)
121 2p32_A Heat shock 70 kDa prote 50.3 59 0.002 22.3 7.1 64 26-89 14-84 (120)
122 3uun_A Dystrophin; triple heli 49.9 47 0.0016 21.1 11.1 70 33-102 39-114 (119)
123 2p22_C Protein SRN2; endosome, 49.7 50 0.0017 25.6 6.6 62 24-86 42-110 (192)
124 3uul_A Utrophin; spectrin repe 49.5 49 0.0017 21.2 11.0 71 33-103 39-115 (118)
125 3qh9_A Liprin-beta-2; coiled-c 49.5 67 0.0023 22.7 8.0 38 45-82 37-77 (81)
126 1i84_S Smooth muscle myosin he 49.1 1.1E+02 0.0039 28.6 9.9 17 52-68 882-898 (1184)
127 3rrk_A V-type ATPase 116 kDa s 48.7 46 0.0016 26.2 6.4 22 24-45 227-248 (357)
128 1nkp_B MAX protein, MYC proto- 48.6 38 0.0013 22.2 5.1 31 60-90 48-78 (83)
129 3u5e_h 60S ribosomal protein L 48.5 69 0.0023 23.6 6.9 55 25-92 6-61 (120)
130 3trt_A Vimentin; cytoskeleton, 48.5 51 0.0018 21.1 9.4 16 54-69 48-63 (77)
131 2a01_A Apolipoprotein A-I; fou 48.2 94 0.0032 24.1 10.7 36 66-101 147-186 (243)
132 4etp_A Kinesin-like protein KA 48.0 79 0.0027 26.5 8.0 33 38-74 11-43 (403)
133 1hjb_A Ccaat/enhancer binding 47.6 35 0.0012 23.8 4.9 24 68-91 52-75 (87)
134 3bbo_Z Ribosomal protein L29; 47.5 40 0.0014 26.7 5.7 59 24-93 66-125 (173)
135 1x79_B RAB GTPase binding effe 46.9 66 0.0023 23.6 6.5 45 55-103 6-50 (112)
136 3bas_A Myosin heavy chain, str 46.2 66 0.0023 21.8 9.4 45 59-103 35-82 (89)
137 4b9q_A Chaperone protein DNAK; 45.8 1E+02 0.0035 26.5 8.6 9 63-71 568-576 (605)
138 2dgc_A Protein (GCN4); basic d 45.3 31 0.0011 22.4 4.1 31 48-82 30-60 (63)
139 1nlw_A MAD protein, MAX dimeri 45.2 61 0.0021 21.7 5.7 35 56-90 44-78 (80)
140 1jnm_A Proto-oncogene C-JUN; B 44.8 8.7 0.0003 24.5 1.3 17 53-69 41-57 (62)
141 1gu4_A CAAT/enhancer binding p 44.2 37 0.0013 23.2 4.5 18 70-87 54-71 (78)
142 2fxo_A Myosin heavy chain, car 44.1 84 0.0029 22.3 12.0 56 48-104 34-89 (129)
143 2w6b_A RHO guanine nucleotide 43.3 55 0.0019 21.9 5.1 19 56-74 18-36 (56)
144 2d1l_A Metastasis suppressor p 42.6 1.3E+02 0.0045 24.2 10.3 46 19-64 83-140 (253)
145 2pnv_A Small conductance calci 42.1 45 0.0015 20.8 4.3 31 23-53 9-39 (43)
146 2dq3_A Seryl-tRNA synthetase; 42.1 39 0.0013 28.5 5.2 83 22-109 29-114 (425)
147 3ghg_A Fibrinogen alpha chain; 42.1 1.6E+02 0.0053 27.1 9.4 16 78-93 143-158 (562)
148 3ni0_A Bone marrow stromal ant 42.0 77 0.0026 23.2 6.2 24 54-77 38-61 (99)
149 2oxj_A Hybrid alpha/beta pepti 41.9 45 0.0016 20.4 4.2 26 56-81 5-30 (34)
150 3kin_B Kinesin heavy chain; mo 41.6 35 0.0012 24.3 4.3 24 27-50 93-116 (117)
151 3mov_A Lamin-B1; LMNB1, B-type 41.5 87 0.003 21.8 7.0 25 45-69 27-51 (95)
152 2zjr_V 50S ribosomal protein L 41.4 72 0.0025 20.8 5.9 51 31-92 10-60 (67)
153 2c5k_T Syntaxin TLG1, T-snare 41.0 77 0.0026 21.9 5.9 55 30-89 36-91 (95)
154 4ioe_A Secreted protein ESXB; 41.0 65 0.0022 20.1 9.1 36 17-52 10-49 (93)
155 1r73_A TM1492, 50S ribosomal p 40.6 74 0.0025 20.7 6.2 51 31-92 10-60 (66)
156 3m48_A General control protein 40.5 38 0.0013 20.6 3.6 25 56-80 4-28 (33)
157 2l3l_A Tubulin-specific chaper 40.4 98 0.0033 22.0 7.2 46 29-74 57-103 (111)
158 1uix_A RHO-associated kinase; 40.3 87 0.003 21.5 6.9 25 23-47 4-28 (71)
159 2do5_A Splicing factor 3B subu 40.2 15 0.00053 24.6 2.0 24 19-42 14-41 (58)
160 3mq7_A Bone marrow stromal ant 39.6 1.2E+02 0.0041 22.9 7.1 50 54-103 45-97 (121)
161 2j69_A Bacterial dynamin-like 39.6 2E+02 0.0068 25.4 10.2 49 50-98 347-398 (695)
162 3etw_A Adhesin A; antiparallel 39.6 65 0.0022 23.8 5.6 28 74-101 72-99 (119)
163 1m1j_C Fibrinogen gamma chain; 39.5 57 0.0019 28.1 6.0 9 36-44 47-55 (409)
164 4gwp_A Mediator of RNA polymer 39.2 33 0.0011 25.6 3.9 59 20-78 15-73 (115)
165 1s1c_X RHO-associated, coiled- 39.0 91 0.0031 21.3 6.9 19 35-53 4-22 (71)
166 1hjb_A Ccaat/enhancer binding 38.9 79 0.0027 22.0 5.6 20 71-90 41-60 (87)
167 2p22_A Suppressor protein STP2 38.6 1.4E+02 0.0047 23.2 8.4 66 25-90 14-80 (174)
168 1dn1_B Syntaxin 1A, syntaxin b 38.5 1.4E+02 0.0048 23.3 8.0 28 42-69 71-98 (267)
169 3a7p_A Autophagy protein 16; c 38.4 1.4E+02 0.0046 23.1 8.4 42 23-68 68-109 (152)
170 3r8s_Y 50S ribosomal protein L 38.1 57 0.0019 21.1 4.5 24 31-54 10-33 (63)
171 2asw_A Hypothetical protein AF 38.0 25 0.00086 18.6 2.4 42 38-79 8-52 (56)
172 1zww_A SH3-containing GRB2-lik 37.1 1.4E+02 0.0047 22.8 8.9 49 49-97 157-205 (256)
173 2p2u_A HOST-nuclease inhibitor 37.1 1.3E+02 0.0044 22.5 9.0 96 13-108 10-124 (171)
174 3ci9_A Heat shock factor-bindi 36.9 80 0.0027 20.0 5.8 39 66-104 6-44 (48)
175 3jyw_X 60S ribosomal protein L 36.4 13 0.00043 26.2 1.2 29 25-53 5-34 (86)
176 2wuj_A Septum site-determining 36.3 53 0.0018 20.7 4.1 34 54-87 22-55 (57)
177 4efa_G V-type proton ATPase su 36.2 56 0.0019 23.7 4.7 58 45-102 47-105 (119)
178 2j69_A Bacterial dynamin-like 36.2 2E+02 0.0067 25.4 9.0 50 55-104 618-668 (695)
179 1m1j_B Fibrinogen beta chain; 36.1 2.3E+02 0.0077 25.0 11.8 51 21-71 98-158 (464)
180 3c3f_A Alpha/beta peptide with 35.9 64 0.0022 19.7 4.2 26 56-81 5-30 (34)
181 1joc_A EEA1, early endosomal a 35.6 1.2E+02 0.004 21.5 7.3 21 39-59 20-40 (125)
182 1tu3_F RAB GTPase binding effe 34.6 67 0.0023 22.7 4.7 45 51-96 8-52 (79)
183 3u1c_A Tropomyosin alpha-1 cha 34.4 1.1E+02 0.0039 21.0 9.4 18 37-54 9-26 (101)
184 3c3g_A Alpha/beta peptide with 34.3 71 0.0024 19.4 4.2 27 56-82 4-30 (33)
185 3onj_A T-snare VTI1; helix, HA 34.2 1.1E+02 0.0038 20.8 9.4 64 30-94 30-94 (97)
186 2lhr_A Iron-regulated surface 34.1 61 0.0021 22.8 4.4 41 21-61 25-66 (78)
187 4dyl_A Tyrosine-protein kinase 34.0 1.9E+02 0.0066 23.6 11.2 75 32-110 304-399 (406)
188 3dyt_A Sorting nexin-9; 3-heli 34.0 1.9E+02 0.0064 23.4 8.6 43 49-91 296-340 (366)
189 2a3q_A Hypothetical protein; M 33.9 1.2E+02 0.0041 22.7 6.4 37 35-72 34-72 (170)
190 1t72_A Phosphate transport sys 33.9 69 0.0023 23.1 4.9 36 66-101 4-39 (227)
191 3jsv_C NF-kappa-B essential mo 33.5 1.3E+02 0.0046 21.6 6.9 38 48-85 40-80 (94)
192 3s4r_A Vimentin; alpha-helix, 33.4 52 0.0018 22.7 3.9 24 65-88 69-92 (93)
193 3hhm_B NISH2 P85alpha; PI3KCA, 33.3 2.1E+02 0.0073 23.9 8.6 54 25-86 200-253 (373)
194 1uix_A RHO-associated kinase; 33.3 63 0.0022 22.2 4.3 16 38-53 5-20 (71)
195 3j21_W 50S ribosomal protein L 32.5 1.1E+02 0.0037 20.3 8.1 30 25-54 3-33 (72)
196 3lay_A Zinc resistance-associa 32.4 1.7E+02 0.0057 22.4 9.8 74 21-95 69-142 (175)
197 1am9_A Srebp-1A, protein (ster 32.2 62 0.0021 21.5 4.1 24 70-93 54-77 (82)
198 2oie_A RS21-C6; helix, hydrola 31.8 1.2E+02 0.004 20.4 6.2 57 48-104 31-92 (111)
199 1s1c_X RHO-associated, coiled- 31.8 83 0.0028 21.5 4.7 25 71-95 4-28 (71)
200 1m1j_C Fibrinogen gamma chain; 31.8 2.5E+02 0.0084 24.1 11.3 22 73-94 105-126 (409)
201 1kd8_A GABH AIV, GCN4 acid bas 31.8 92 0.0031 19.2 4.8 23 61-83 10-32 (36)
202 2p22_C Protein SRN2; endosome, 31.8 1.8E+02 0.0061 22.5 11.1 77 19-99 29-105 (192)
203 3kyp_A Pfnaps, nucleosome asse 31.7 1.6E+02 0.0054 22.4 6.8 49 56-104 4-52 (193)
204 2hy6_A General control protein 31.1 86 0.0029 19.1 4.2 26 56-81 5-30 (34)
205 1x8y_A Lamin A/C; structural p 30.6 1.2E+02 0.0042 20.3 7.1 18 51-68 24-41 (86)
206 1uo4_A General control protein 30.3 90 0.0031 19.0 4.2 25 56-80 5-29 (34)
207 1gu4_A CAAT/enhancer binding p 30.1 76 0.0026 21.6 4.3 35 56-90 26-60 (78)
208 1u00_A HSC66, chaperone protei 30.0 1.8E+02 0.0062 22.0 8.6 44 29-72 142-186 (227)
209 3r84_A Mediator of RNA polymer 29.7 81 0.0028 22.2 4.5 32 54-85 39-70 (86)
210 2d4y_A HAP1, flagellar HOOK-as 29.6 2.4E+02 0.0083 23.4 8.8 47 32-78 73-122 (463)
211 1f5n_A Interferon-induced guan 29.6 3E+02 0.01 24.4 11.8 51 48-98 512-563 (592)
212 3sjb_C Golgi to ER traffic pro 29.2 1.6E+02 0.0054 21.1 6.9 35 70-104 53-87 (93)
213 1zme_C Proline utilization tra 29.1 31 0.0011 21.0 2.0 9 35-43 49-57 (70)
214 3nmd_A CGMP dependent protein 28.4 1.1E+02 0.0039 20.9 5.0 9 39-47 21-29 (72)
215 3hnw_A Uncharacterized protein 28.3 1.8E+02 0.006 21.3 8.4 27 46-72 73-99 (138)
216 3l4q_C Phosphatidylinositol 3- 28.2 2.1E+02 0.0071 22.1 7.1 19 17-35 97-115 (170)
217 3lof_A Heat shock 70 kDa prote 27.9 1.4E+02 0.0047 20.0 5.9 12 68-79 39-50 (113)
218 2kmu_A ATP-dependent DNA helic 27.8 60 0.002 21.1 3.3 50 36-88 3-53 (56)
219 3vkg_A Dynein heavy chain, cyt 27.6 3.1E+02 0.011 29.7 10.0 70 35-105 1897-1966(3245)
220 3fx7_A Putative uncharacterize 27.6 1.7E+02 0.0057 20.9 7.0 64 25-95 22-85 (94)
221 1dkg_A Nucleotide exchange fac 27.4 2.1E+02 0.0072 21.9 7.5 91 17-108 36-142 (197)
222 2aze_B Transcription factor E2 27.4 89 0.003 22.1 4.4 15 34-48 3-17 (106)
223 3zbh_A ESXA; unknown function, 27.2 1.2E+02 0.004 18.9 10.3 35 18-52 11-49 (99)
224 1m1j_B Fibrinogen beta chain; 27.2 3.2E+02 0.011 24.0 10.8 23 73-95 175-197 (464)
225 3swy_A Cyclic nucleotide-gated 26.9 51 0.0017 20.9 2.7 20 24-43 24-43 (46)
226 1hci_A Alpha-actinin 2; triple 26.7 2.4E+02 0.0082 22.3 7.6 19 35-53 404-422 (476)
227 4ani_A Protein GRPE; chaperone 26.6 1.7E+02 0.0058 23.1 6.4 42 34-79 63-104 (213)
228 1fxk_A Prefoldin; archaeal pro 26.5 1.4E+02 0.0047 19.5 9.0 14 76-89 89-102 (107)
229 2zdi_C Prefoldin subunit alpha 26.3 51 0.0018 23.6 3.0 9 79-87 39-47 (151)
230 3u06_A Protein claret segregat 25.7 2E+02 0.0068 24.3 7.0 48 21-68 8-58 (412)
231 3m9b_A Proteasome-associated A 25.5 1.3E+02 0.0043 24.8 5.6 22 65-86 74-95 (251)
232 2zqm_A Prefoldin beta subunit 25.4 1.5E+02 0.0051 19.6 11.0 81 20-100 10-111 (117)
233 1nkp_A C-MYC, MYC proto-oncoge 25.3 1.6E+02 0.0054 19.8 7.0 58 33-90 19-83 (88)
234 4e61_A Protein BIM1; EB1-like 25.2 1.8E+02 0.0063 21.1 5.8 14 91-104 39-52 (106)
235 1ud0_A HSC70, 70 kDa heat-shoc 24.6 1.6E+02 0.0054 19.5 5.6 12 68-79 34-45 (113)
236 3t34_A Dynamin-related protein 24.6 22 0.00075 27.9 0.8 44 64-107 280-324 (360)
237 1lrz_A FEMA, factor essential 24.5 2.6E+02 0.009 22.6 7.3 27 21-47 245-271 (426)
238 2bni_A General control protein 24.4 1.3E+02 0.0043 18.4 4.2 25 56-80 5-29 (34)
239 2i0m_A Phosphate transport sys 24.3 1.1E+02 0.0038 21.8 4.5 32 69-100 3-34 (216)
240 2es4_D Lipase chaperone; prote 24.2 1.6E+02 0.0055 24.5 6.0 31 34-68 264-294 (332)
241 3mq9_A Bone marrow stromal ant 23.5 1.7E+02 0.0057 23.6 5.9 44 64-107 375-420 (471)
242 3vkg_A Dynein heavy chain, cyt 23.3 5.9E+02 0.02 27.6 11.1 61 19-87 2010-2070(3245)
243 3viq_B Mating-type switching p 23.2 2E+02 0.0068 20.2 7.4 59 32-95 3-63 (85)
244 3etv_A Protein transport prote 23.1 48 0.0016 28.8 2.7 29 16-44 9-37 (355)
245 1fio_A SSO1 protein; four heli 22.9 2.1E+02 0.0072 20.4 11.3 27 42-68 47-73 (196)
246 1gmj_A ATPase inhibitor; coile 22.9 2E+02 0.0069 20.2 7.0 57 25-86 22-78 (84)
247 2inr_A DNA topoisomerase 4 sub 22.9 1.3E+02 0.0045 26.9 5.5 39 49-87 455-496 (514)
248 1s94_A S-syntaxin; three helix 22.8 2.2E+02 0.0074 20.5 7.7 11 92-102 127-137 (180)
249 3szr_A Interferon-induced GTP- 22.7 1.4E+02 0.0047 25.9 5.5 40 66-105 297-337 (608)
250 2eqb_B RAB guanine nucleotide 22.6 2.2E+02 0.0074 20.4 11.4 18 62-79 43-60 (97)
251 2oez_A UPF0289 protein VP2528; 22.5 1.3E+02 0.0043 24.4 5.0 47 27-73 56-105 (247)
252 3kin_B Kinesin heavy chain; mo 22.3 1.4E+02 0.0048 21.1 4.7 27 59-86 90-116 (117)
253 3a98_A DOCK2, dedicator of cyt 22.0 1.3E+02 0.0043 22.2 4.5 19 35-53 120-138 (184)
254 3b1f_A Putative prephenate deh 21.9 1.9E+02 0.0066 21.3 5.6 17 56-72 252-268 (290)
255 1lwu_C Fibrinogen gamma chain; 21.9 3E+02 0.01 22.9 7.3 13 74-86 41-53 (323)
256 3lnr_A Aerotaxis transducer AE 21.9 86 0.0029 22.9 3.6 20 59-78 95-114 (175)
257 4ev6_A Magnesium transport pro 21.9 2.9E+02 0.01 21.7 11.4 37 21-57 176-217 (339)
258 1u5p_A Spectrin alpha chain, b 21.4 2.2E+02 0.0074 20.0 11.7 64 32-95 84-164 (216)
259 3fav_A ESAT-6-like protein ESX 21.3 1.7E+02 0.0058 18.7 7.9 36 17-52 8-47 (101)
260 2wg5_A General control protein 21.2 1E+02 0.0035 21.5 3.7 14 72-85 20-33 (109)
261 3pev_B Nucleoporin GLE1; RECA, 21.2 2.2E+02 0.0075 23.3 6.2 33 47-79 20-56 (297)
262 2zkr_v 60S ribosomal protein L 21.1 1.8E+02 0.0061 21.4 5.1 30 26-55 7-37 (123)
263 2xkj_E Topoisomerase IV; type 20.9 1.6E+02 0.0054 27.7 5.8 41 49-89 697-740 (767)
264 3cuq_A Vacuolar-sorting protei 20.8 1.3E+02 0.0043 24.2 4.6 44 37-88 7-50 (234)
265 3pbf_A Pulmonary surfactant-as 20.8 85 0.0029 20.9 3.1 22 68-89 4-25 (148)
266 3iyk_A VP5; icosahedral virus; 20.5 4.9E+02 0.017 23.7 10.6 86 9-94 83-181 (526)
267 3qfl_A MLA10; coiled-coil, (CC 20.5 1.4E+02 0.0048 20.4 4.3 14 38-51 20-33 (115)
268 3iv1_A Tumor susceptibility ge 20.3 2.2E+02 0.0076 19.7 6.2 6 59-64 64-69 (78)
269 3vol_A Aerotaxis transducer AE 20.2 22 0.00075 26.0 0.0 22 59-80 210-231 (233)
No 1
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.79 E-value=0.1 Score=41.45 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=41.4
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
+...|..+...-.+|-.++..|+.++..||.|++.+.......+ ..|..|+..||..-..|+.
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~----~~Lq~el~~l~~~~~~l~~ 109 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQV----SVLEDDLSQTRAIKEQLHK 109 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34566777777889999999999999999999987744332222 3333444444444444433
No 2
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.21 E-value=0.34 Score=34.95 Aligned_cols=82 Identities=18% Similarity=0.335 Sum_probs=57.3
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHH----------hhHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIY---RDELTDMKKT----------LSVEVEQLRSEFQE 84 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtY---r~EL~dLK~~----------LnsEVeqLRsEfqe 84 (144)
+..+..+|..+.--+..|...+.+++..+.++|.|.++.+... .+++..||+- |.+.|+.|+.|+.=
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888889999999999999999999999988766432 2345555443 44556666666666
Q ss_pred HHHHHHHhHHHHhhh
Q 032236 85 LRSTLQQQQDDVTAS 99 (144)
Q Consensus 85 LRttLqqQ~e~~ta~ 99 (144)
||..-.+++..+.+.
T Consensus 102 LKk~heeEl~eLq~q 116 (119)
T 3ol1_A 102 LKKLHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555555444
No 3
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=94.59 E-value=0.27 Score=39.84 Aligned_cols=71 Identities=21% Similarity=0.425 Sum_probs=52.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 032236 32 RAELLNRIQGL----KQDLQNWRSKLDTQVKIYRDELT----DMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRN 102 (144)
Q Consensus 32 r~ELL~Rvq~L----K~DLq~WRskLDtQVKtYr~EL~----dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~n 102 (144)
+..|-..+++| ++-.+.++.+|+.++...|.-|. ++|..|..-++.|+..|.++..-|++|.+.+...+.-
T Consensus 149 ~~kl~~~~e~L~~ql~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p 227 (273)
T 3s84_A 149 QEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEP 227 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHh
Confidence 44555555554 45567788888888887777664 6777777778889999999999999998888777643
No 4
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=94.46 E-value=0.6 Score=37.78 Aligned_cols=73 Identities=22% Similarity=0.447 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHH----HHHHHhhHHHHHHHHHH----HHHHHHHHHhHHHHhh
Q 032236 31 SRAELLNRIQGLKQDLQ----NWRSKLDTQVKIYRDELT----DMKKTLSVEVEQLRSEF----QELRSTLQQQQDDVTA 98 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq----~WRskLDtQVKtYr~EL~----dLK~~LnsEVeqLRsEf----qeLRttLqqQ~e~~ta 98 (144)
.+..+-.-|+.++..|. ..+.++..++..||..|. +||+.++..|+.||.-+ .+||..|.+-.+.+..
T Consensus 38 l~~~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk~ 117 (273)
T 3s84_A 38 VSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKG 117 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444455566666553 344455556666666665 67777888888888777 7777777777777766
Q ss_pred hhhhc
Q 032236 99 SLRNL 103 (144)
Q Consensus 99 ~L~nL 103 (144)
.|.-+
T Consensus 118 ~L~Py 122 (273)
T 3s84_A 118 RLTPY 122 (273)
T ss_dssp HHHHH
T ss_pred HhHhH
Confidence 66544
No 5
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.12 E-value=0.39 Score=35.45 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
.+|-.++..|+.++..||.|+..+-+ |-...-.+|..|+.+||..-..|...|+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~----e~~~~~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYA----QSYKQVSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999987543 3333444555666666666555555443
No 6
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.70 E-value=0.77 Score=33.08 Aligned_cols=75 Identities=12% Similarity=0.237 Sum_probs=43.1
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhHHHHhh
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL---RSTLQQQQDDVTA 98 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL---RttLqqQ~e~~ta 98 (144)
+-|.+|...=..+-.-=..|--++.+++.-+|.=-..|.+|+. ++.++-.++..||.++.+. |.-|..+.+.++.
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~-~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML-QREEAENTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 3444544443333333345556666777766666666776664 5666666677777666553 5555555555544
No 7
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.29 E-value=2 Score=29.60 Aligned_cols=75 Identities=13% Similarity=0.325 Sum_probs=55.2
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL---RSTLQQQQD 94 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL---RttLqqQ~e 94 (144)
+..+..+|..++--++.|..-+.+++.++.+||.|.++.+. +|.++-.++-.||.++-++ |.-|..+.+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~--------~R~~~E~d~~~LrkdvD~a~l~r~dLE~kve 73 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML--------QREEAENTLQSFRQDVDNASLARLDLERKVE 73 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45577889999999999999999999999999988766543 4566666666666655553 556666666
Q ss_pred HHhhhh
Q 032236 95 DVTASL 100 (144)
Q Consensus 95 ~~ta~L 100 (144)
+++.-|
T Consensus 74 sL~eEl 79 (86)
T 3swk_A 74 SLQEEI 79 (86)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 8
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=90.16 E-value=1.1 Score=37.18 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=56.5
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHhH
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVE---VEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsE---VeqLRsEfqeLRttLqqQ~ 93 (144)
-+.|..|...=...-..++.+..+|.++|.+|...+.+...-...|...|+++ +++|+.++..++..++...
T Consensus 122 ~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~ 196 (346)
T 2nrj_A 122 KEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYK 196 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777788889999999999999999888888888888777765 6688888888887776333
No 9
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=89.98 E-value=0.47 Score=33.56 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 51 SKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 51 skLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
++|.++|..-+.+|..+ ..|+..|++|++++..|+..|++|...
T Consensus 2 ~~l~~~~~~l~~~~~~~-~~l~~~~~~l~~~l~~~~~~l~~~~~~ 45 (182)
T 3kqg_A 2 STLNAQIPELKSDLEKA-SALNTKIRALQGSLENMSKLLKRQNDI 45 (182)
T ss_dssp -----------CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655544 467888888888888888888876553
No 10
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.96 E-value=2.3 Score=30.88 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 032236 55 TQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 55 tQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L 100 (144)
.+++.+..|+..|+..|..| ..+|.+...-++.|.++++++|++|
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE-~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKE-NELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666544 3456677777777777777777776
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.95 E-value=4.4 Score=31.57 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=44.4
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
-...+|..|.+.--+++.++..++..+.... ..+..-+.+|..++..+..++..++.+...++..
T Consensus 101 ~~~~~i~~lE~eile~~e~ie~~~~~l~~~~----~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~ 165 (256)
T 3na7_A 101 IAKERSNQANREIENLQNEIKRKSEKQEDLK----KEMLELEKLALELESLVENEVKNIKETQQIIFKK 165 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777788888888877776544 4455666777777777777777777666655433
No 12
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=89.93 E-value=0.32 Score=33.94 Aligned_cols=61 Identities=31% Similarity=0.430 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 31 SRAELLNRIQGLKQDLQNWRS------KLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRs------kLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
|-.|.-+|+..+|..||.--+ -.+..+-.|..||.-.|-.=|-|||.||.|-..+|..||-
T Consensus 3 swaefkqrlaaiktrlqalggseaelaafekeiaafeselqaykgkgnpevealrkeaaairdelqa 69 (73)
T 2a3d_A 3 SWAEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQA 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence 445677888888888876543 2455666777777777777899999999999999998874
No 13
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=89.92 E-value=2 Score=30.05 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=27.3
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHh
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRS 51 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRs 51 (144)
-+..|++++...-.+|=.||++|+.+|++=|+
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999987654
No 14
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.61 E-value=4.8 Score=31.04 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 032236 53 LDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 53 LDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L 100 (144)
|...++.+..|+..|...|..|- .+|.+...-++.|.+++|++|++|
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~-~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKEN-ELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777776553 467777778888888888888887
No 15
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.20 E-value=4.2 Score=28.34 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=17.1
Q ss_pred HHhHhHHhHHHHHHHHHHHHH
Q 032236 24 KIAELNESRAELLNRIQGLKQ 44 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~ 44 (144)
.|+.||+-=.-.|.||+.|-+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEq 30 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQ 30 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888899988765
No 16
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=89.19 E-value=0.36 Score=37.01 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=25.6
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~t 97 (144)
+-+-++||++|++.| +---..|+-|++=--.+.-++.....|+.++|..+...|.+|+=..+-|.++|+=++-.++
T Consensus 4 vtSL~~ELqEsqskL-~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~ 79 (130)
T 3cl3_D 4 ASGSLGELQESQSRL-EAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAAS 79 (130)
T ss_dssp ------------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999998875 3445567777776566777788888899999999999999999999999999987776555
No 17
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=89.18 E-value=2.7 Score=28.98 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=27.7
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhh
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSK 52 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRsk 52 (144)
-+..|++++..--.+|=.||++|+++|.+=+++
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999876543
No 18
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=89.18 E-value=2.7 Score=31.46 Aligned_cols=48 Identities=15% Similarity=0.410 Sum_probs=30.5
Q ss_pred HHHHHHHHHHH----HHHHHHhhHHHHHHHHH----HHHHHHHHHHhHHHHhhhhh
Q 032236 54 DTQVKIYRDEL----TDMKKTLSVEVEQLRSE----FQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 54 DtQVKtYr~EL----~dLK~~LnsEVeqLRsE----fqeLRttLqqQ~e~~ta~L~ 101 (144)
...+..||..| .+|++.++..|++||.- .++||+.|.+.++.+.++|.
T Consensus 110 ~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~ 165 (185)
T 3r2p_A 110 QEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLA 165 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444443 35666677777766643 56788888888888777764
No 19
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=88.73 E-value=2.1 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032236 37 NRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRs 80 (144)
..|..|..+|+.=|..+..|...| .+|-+.|.+|..||..-|.
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eY-q~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLV-GDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHH
Confidence 456677788888888888999999 5788899999999877664
No 20
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=88.48 E-value=3.6 Score=28.01 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032236 32 RAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRs 80 (144)
+..+-..|..|..+|+.=|..+..|...| .+|-++|.+|..||..-|.
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EY-q~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 45555677788899999999999999999 5788999999999977764
No 21
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.42 E-value=2.7 Score=31.88 Aligned_cols=38 Identities=34% Similarity=0.478 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhH
Q 032236 56 QVKIYRDELTDMKKTL---SVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 56 QVKtYr~EL~dLK~~L---nsEVeqLRsEfqeLRttLqqQ~ 93 (144)
+|+..++||..|+..| ..|||+||.+++.+...|....
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 4666666666666554 3577777777777766665443
No 22
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=88.27 E-value=2.3 Score=29.49 Aligned_cols=47 Identities=13% Similarity=0.439 Sum_probs=27.4
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHH-HHHHh
Q 032236 25 IAELNESRAELLNRIQGLKQDLQNW------RSKLDTQVKIYRDELTD-MKKTL 71 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~W------RskLDtQVKtYr~EL~d-LK~~L 71 (144)
|.+....-.|...=|..|--++++- |.++.+.|+.|+.+|.. ||..|
T Consensus 36 i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~l 89 (97)
T 3onj_A 36 LKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPL 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555554 77777788888777766 66544
No 23
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=87.83 E-value=6.5 Score=28.87 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=40.3
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKK---TLSVEVEQLRSEFQEL 85 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~---~LnsEVeqLRsEfqeL 85 (144)
+-+..|..|.--=..|-..+..+|.+-|.|-..|..||..-..||..-+. ..-.|.++||.+..++
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666556666666777777777777777777777777766442 2334555555555544
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.37 E-value=4.2 Score=38.49 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 36 LNRIQGLKQDLQNWRS------KLDTQVKIYRDELTDMKKTLSV---EVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 36 L~Rvq~LK~DLq~WRs------kLDtQVKtYr~EL~dLK~~Lns---EVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
...+..||+|+..=.. .+..+|+....|+..|++.+.. |.+.|....++++..|++....+......|.
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555444332 3445666666666666654432 3344444444444444444433333333333
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.95 E-value=1.5 Score=30.97 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=17.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 63 ELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 63 EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
|+..=+..|..|.++|+.|-.....+|+.=
T Consensus 45 e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 45 NAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556667777776666666665543
No 26
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=85.83 E-value=9.1 Score=28.51 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHH----HHHHHHHHHhHH
Q 032236 67 MKKTLSVEVEQLRSEF----QELRSTLQQQQD 94 (144)
Q Consensus 67 LK~~LnsEVeqLRsEf----qeLRttLqqQ~e 94 (144)
++..|..-|+.||.-| .++|+.|.+.++
T Consensus 149 lr~~l~~~~e~lk~~l~Py~ee~k~kl~~~le 180 (185)
T 3r2p_A 149 MRDRARAHVDALRTHLAPYSDELRQRLAARLE 180 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444444444444442 344444444443
No 27
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=85.30 E-value=3.7 Score=28.74 Aligned_cols=33 Identities=15% Similarity=0.566 Sum_probs=21.8
Q ss_pred HHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHh
Q 032236 39 IQGLKQDLQN----WRSKLDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 39 vq~LK~DLq~----WRskLDtQVKtYr~EL~dLK~~L 71 (144)
|+.|--++++ -|+++.+.|+.||.+|..||.-|
T Consensus 65 l~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 65 LAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444443 67888888888888887776544
No 28
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=85.06 E-value=3.8 Score=27.75 Aligned_cols=41 Identities=24% Similarity=0.553 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 38 RIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 38 Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
.|..|..+|+.=|..+..|...| .+|-+.|.+|..||..-|
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EY-q~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREY-QDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHH
Confidence 33444455555555555555555 344455555555554433
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.76 E-value=4.5 Score=33.53 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=13.0
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQNWRSKLDTQ 56 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQ 56 (144)
.+.++...-..|-.++....+.++.=+.+++..
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344443333333333333333444434444333
No 30
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=84.26 E-value=5.6 Score=28.00 Aligned_cols=41 Identities=22% Similarity=0.458 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 38 RIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 38 Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
.|..|..+|+.=|..+..|...|+ +|-++|.+|..||..-|
T Consensus 45 ~i~~lE~eL~~~r~e~~~ql~EYq-~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 45 MLTDKEREMAEIRDQMQQQLNDYE-QLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 344455555555555556666664 45566666655555443
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.17 E-value=3.8 Score=29.35 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 032236 51 SKLDTQVKIYRDELTD 66 (144)
Q Consensus 51 skLDtQVKtYr~EL~d 66 (144)
...+.+++.|+.-|+.
T Consensus 71 ~~~~~~l~~~q~~i~~ 86 (129)
T 3tnu_B 71 QRGELALKDARNKLAE 86 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.64 E-value=4 Score=29.33 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 032236 37 NRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK 68 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK 68 (144)
+...+|..-|.+-....+.+++.|+.-|+.|.
T Consensus 59 ~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE 90 (131)
T 3tnu_A 59 SMKASLENSLEETKGRYCMQLAQIQEMIGSVE 90 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555566655555443
No 33
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=83.20 E-value=8.7 Score=26.16 Aligned_cols=59 Identities=24% Similarity=0.444 Sum_probs=39.4
Q ss_pred hhhHHhHhHHh----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032236 21 VGSKIAELNES----RAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 21 i~~ki~ELneS----r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRs 80 (144)
+...|.++... ...+=..|..|..+|+.=|..+..|...| .+|-++|.+|..||..-|.
T Consensus 15 Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EY-q~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHH
Confidence 34555554432 22334455667778888888888888888 4677888888888876664
No 34
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=82.88 E-value=4.3 Score=31.08 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHhhhhhhcc
Q 032236 83 QELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 83 qeLRttLqqQ~e~~ta~L~nL~ 104 (144)
.+||..+.+.++.+.+.|.-.+
T Consensus 142 eelr~kl~~~~eeLr~~l~P~~ 163 (191)
T 1nfn_A 142 RKLRKRLLRDADDLQKRLAVYQ 163 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 4666666666666666665443
No 35
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=82.83 E-value=5.4 Score=25.71 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=29.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 47 QNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 47 q~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
+.|-..|..+|..+..+- ..|..+|..|+.+...|+..|.
T Consensus 22 k~~~~~Le~~v~~L~~~n----~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEK----SALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888887666554 4455678889999988888774
No 36
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.12 E-value=11 Score=27.75 Aligned_cols=52 Identities=13% Similarity=0.337 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 29 NESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 29 neSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
.+.|..++ ..||.++..||..|+.=--.++..+..|+..+| +|..||.+=|.
T Consensus 10 ~d~rD~~I---e~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~----~Le~eL~e~r~ 61 (120)
T 3i00_A 10 KDEKDHLI---ERLYREISGLKAQLENMKTESQRVVLQLKGHVS----ELEADLAEQQH 61 (120)
T ss_dssp CCTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred CCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34556554 459999999999988877777777777776544 56666666653
No 37
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.43 E-value=2.8 Score=26.98 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHhHHHHhhhhh
Q 032236 73 VEVEQLRSEFQELRST---LQQQQDDVTASLR 101 (144)
Q Consensus 73 sEVeqLRsEfqeLRtt---LqqQ~e~~ta~L~ 101 (144)
++|+.||.|..+||.. |+++.+.+.+.|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777776653 3344444444443
No 38
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=81.20 E-value=10 Score=25.79 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHH--HHhhhHH-HHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHH
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQN--WRSKLDT-QVKIYRDELTDMKKTLSVE----VEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~--WRskLDt-QVKtYr~EL~dLK~~LnsE----VeqLRsEfqeLRttLqq 91 (144)
+..++-+.|.+|=+-|-.+++-|.+ +..+|.. ..+.....|.+++..|... ++.++.-+.+|......
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~ 77 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNP 77 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888877 8888864 4456788888888888764 66666666666655544
No 39
>1mz9_A Cartilage oligomeric matrix protein; pentameric coiled-coil domain, protein binding; HET: VDY; 1.70A {Mus musculus} SCOP: h.1.7.1 PDB: 1vdf_A 1fbm_A
Probab=80.97 E-value=4.6 Score=24.94 Aligned_cols=35 Identities=37% Similarity=0.469 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLS 72 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln 72 (144)
.|+.++..++.=++.=|.-+..||| |++.||++++
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~~qqvk----E~~~lr~ti~ 40 (45)
T 1mz9_A 6 QMLRELQETNAALQDVRELLRQQVK----EITFLKNTVM 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHH----HHHHHHhhHh
Confidence 5788888888888888888999998 7777777654
No 40
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=80.46 E-value=6 Score=27.57 Aligned_cols=33 Identities=9% Similarity=0.371 Sum_probs=20.5
Q ss_pred HHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHH
Q 032236 38 RIQGLKQDLQN----WRSKLDTQVKIYRDELTDMKKT 70 (144)
Q Consensus 38 Rvq~LK~DLq~----WRskLDtQVKtYr~EL~dLK~~ 70 (144)
=|+.|--++++ -|..+.+.|+.|+.+|..||..
T Consensus 53 ll~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 53 LLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp HHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445444 5777788888888777655543
No 41
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.55 E-value=20 Score=27.85 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=14.6
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQD 45 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~D 45 (144)
+-+|.+|..|..-+.+|-..|+.|..+
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~ 40 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALND 40 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445556666655555555555554443
No 42
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.57 E-value=18 Score=26.85 Aligned_cols=68 Identities=18% Similarity=0.341 Sum_probs=41.5
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSK------LDTQVKIYRDELTD---MKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRsk------LDtQVKtYr~EL~d---LK~~LnsEVeqLRsEfqeLRt 87 (144)
-+..++....+.=.+-..-|..||..+..-+.. |.+||..|+.-..- -|..+++|.++|..++.-|..
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 334444444443333344455666666665543 45699999986653 456788888888877765543
No 43
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=77.44 E-value=9.9 Score=28.67 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=8.4
Q ss_pred HHHHHHHHHhHHHHhhhhh
Q 032236 83 QELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 83 qeLRttLqqQ~e~~ta~L~ 101 (144)
.+||+.+.+..+.+.+.|.
T Consensus 142 eeL~~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 142 RKLRKRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhh
Confidence 3444444444444444443
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.35 E-value=17 Score=25.88 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHH---hhhHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 37 NRIQGLKQDLQNWR---SKLDTQVK----IYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 37 ~Rvq~LK~DLq~WR---skLDtQVK----tYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
..||+|.-+|++=+ ..|..++. .|..++.+++ .-|..|..+++.+|..+..|...
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q----~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDAR----NKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666666555433 33444443 3444444443 33445666666666666666443
No 45
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=77.17 E-value=14 Score=24.92 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=16.8
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNW 49 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~W 49 (144)
+..+|.+|+.-+.++-+++..+++.+..-
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666555443
No 46
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=76.95 E-value=15 Score=30.26 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=22.4
Q ss_pred HHHHHhhHHHHHHHHHH----HHHHHHHHHhHHHHhhhhh
Q 032236 66 DMKKTLSVEVEQLRSEF----QELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 66 dLK~~LnsEVeqLRsEf----qeLRttLqqQ~e~~ta~L~ 101 (144)
+||+.++..|+.||.-| .+||+.|.+-.+.+.++|+
T Consensus 151 EL~~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~~L~ 190 (307)
T 2l7b_A 151 KLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLG 190 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHCS
T ss_pred HHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666676666655 3556666666666666654
No 47
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.70 E-value=26 Score=27.66 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=28.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLGL 105 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~l 105 (144)
+|+.=-.+|...|..||..+...+.-.++.+..|..++..||.. .+.+...|++|.+
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~----~~~l~~~ireLEq 116 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI----KEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33333344455555555555555555555555555555544433 3334445555543
No 48
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=76.18 E-value=23 Score=26.81 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=51.7
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHhhHHHHHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTD-MKKTLSVEVEQLRSEF 82 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~d-LK~~LnsEVeqLRsEf 82 (144)
++...+.+|...-..|..|+..|.+. .+|-+.+.-.|..|-.+|-+ .-..+..||+.+..||
T Consensus 119 e~~~~~~~l~~~L~~l~~~l~~le~~-~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 181 (202)
T 2p4w_A 119 PINVKMRELAEFLHELNERIREIIEE-KRELEEARILIETYIENTMRRLAEENRQIIEEIFRDI 181 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778889999999999999998664 59999999999999999865 3556778888888777
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.03 E-value=22 Score=29.02 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHH
Q 032236 38 RIQGLKQDLQNWRSKLDTQVKIYRDELTDMKK---TLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 38 Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~---~LnsEVeqLRsEfqeLRttLq 90 (144)
+...+.+++|.=|.++...++.++.|+..|+. .|--+++.+.....+.+.++|
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 418 RYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 34445566666666666666666666666665 444444444444444444444
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.33 E-value=33 Score=28.29 Aligned_cols=37 Identities=11% Similarity=0.296 Sum_probs=21.1
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLD 54 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLD 54 (144)
+..+...|..|.+-....-.-++.+++++...|..+.
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3445666666665555555556666666655554444
No 51
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=75.16 E-value=6.6 Score=32.37 Aligned_cols=62 Identities=24% Similarity=0.395 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH----HHHHHhhHHHHHHHHHH----HHHHHHHHHhHHHHhhhhhhc
Q 032236 42 LKQDLQNWRSKLDTQVKIYRDELT----DMKKTLSVEVEQLRSEF----QELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 42 LK~DLq~WRskLDtQVKtYr~EL~----dLK~~LnsEVeqLRsEf----qeLRttLqqQ~e~~ta~L~nL 103 (144)
|.++.+.=|.+|.+.+..||..|. +|+..+...|+.||..+ .+||+.+.+..+.+.+.|.-.
T Consensus 101 l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py 170 (307)
T 2l7b_A 101 LSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY 170 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhH
Confidence 344555666777777777776654 44555555666666544 567777777777777777544
No 52
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=75.07 E-value=12 Score=23.65 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=25.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 48 NWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 48 ~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
.|-..|...|+.+..+-. .|.++|..|+.|...|+.-|
T Consensus 22 ~~~~~Le~~~~~L~~~n~----~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNG----QLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 356667777776666554 44567778888887777644
No 53
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=74.35 E-value=8.8 Score=28.16 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=18.9
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhhH
Q 032236 26 AELNESRAELLNRIQGLKQDLQNWRSKLD 54 (144)
Q Consensus 26 ~ELneSr~ELL~Rvq~LK~DLq~WRskLD 54 (144)
.|++..+.||.+-++.++.||.+-...+.
T Consensus 63 ~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 63 EELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777777766554443
No 54
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=74.27 E-value=13 Score=22.98 Aligned_cols=8 Identities=38% Similarity=0.493 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 032236 61 RDELTDMK 68 (144)
Q Consensus 61 r~EL~dLK 68 (144)
+.++..++
T Consensus 25 ~~~~~~~k 32 (60)
T 3htk_A 25 TDEFLKAK 32 (60)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 55
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=74.17 E-value=2.1 Score=32.94 Aligned_cols=30 Identities=20% Similarity=0.577 Sum_probs=13.2
Q ss_pred HHHHHhhHHHHHHHHHH----HHHHHHHHHhHHH
Q 032236 66 DMKKTLSVEVEQLRSEF----QELRSTLQQQQDD 95 (144)
Q Consensus 66 dLK~~LnsEVeqLRsEf----qeLRttLqqQ~e~ 95 (144)
+||..|..-|+.||.-| +++|+.|.+.++.
T Consensus 146 ~lr~kl~~~~e~lk~~l~P~~ee~~~kl~~~lee 179 (216)
T 2lem_A 146 EFRDRMRTHVDSLRTQLAPHSEQMRESLAQRLAE 179 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 34444444444444432 3444444444444
No 56
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=74.02 E-value=8.6 Score=29.39 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=8.0
Q ss_pred HHHHhhHHHHHHHHHHH
Q 032236 67 MKKTLSVEVEQLRSEFQ 83 (144)
Q Consensus 67 LK~~LnsEVeqLRsEfq 83 (144)
++..|..+++.||..+.
T Consensus 100 lr~~l~kdlEelr~kL~ 116 (191)
T 1nfn_A 100 AQARLGADMEDVCGRLV 116 (191)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33344455555554444
No 57
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=73.83 E-value=4.5 Score=23.66 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032236 59 IYRDELTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 59 tYr~EL~dLK~~LnsEVeqLRsEfqeL 85 (144)
..++|+++|| .||..|+.|.++|
T Consensus 4 qlkdevgelk----gevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELK----GEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hhhHHHHHHH----hHHHHHHHHHhcc
Confidence 3456777665 4777777777765
No 58
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.74 E-value=26 Score=26.91 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 032236 52 KLDTQVKIYRDELTDMKKTLS---VEVEQLRSEFQELRSTLQQQQDDVTASLRNLGL 105 (144)
Q Consensus 52 kLDtQVKtYr~EL~dLK~~Ln---sEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~l 105 (144)
.|..|...-+.||..|-.+=| ..|..|-.|+.+||..|..+.-+....++.-|+
T Consensus 89 ~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~KeGi 145 (175)
T 3lay_A 89 ALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGI 145 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344455555666655543222 456667777777777777776666666655554
No 59
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=72.89 E-value=25 Score=25.65 Aligned_cols=67 Identities=12% Similarity=0.306 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHH--HHhhHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 032236 32 RAELLNRIQGLKQDLQNWRSKLDTQVKIYRDE-LTDMK--KTLSVEVEQLRSEFQELRSTLQQQQDDVTAS 99 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~E-L~dLK--~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~ 99 (144)
-.+.+..|+.++.+|+.-+.+++ +++..... |+... ..+..+++.|..++..+-..|+..+..+...
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~-~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~ 107 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVD-AVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELN 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888777776 55555554 22111 1233445555555555544444444444433
No 60
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.63 E-value=23 Score=25.27 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHH---hhhHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 37 NRIQGLKQDLQNWR---SKLDTQVK----IYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 37 ~Rvq~LK~DLq~WR---skLDtQVK----tYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
.+||.|.-+|++=+ ..|..++. .|..++.++ +.-|..|..+++.+|..+..|...
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~----q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQI----QEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665554432 34444443 333344433 333445666666666666666443
No 61
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=72.00 E-value=22 Score=24.77 Aligned_cols=53 Identities=19% Similarity=0.363 Sum_probs=37.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 50 RSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 50 RskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
|-+|--.+..|+.||.-||.+ ..|+..=++-+++|=+.|+++...+.+.+..|
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT-~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRT-EEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888888888876 44666666777777777777777777766554
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=71.70 E-value=6.8 Score=26.49 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 53 LDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 53 LDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
|..+|..+..+.. .|+.|.+.||..+..|++-+.
T Consensus 34 LE~~v~~le~~~~----~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 34 LETQVVTLKELHS----STTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4556655554433 467888888888888777654
No 63
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=71.69 E-value=3.1 Score=26.48 Aligned_cols=34 Identities=12% Similarity=0.266 Sum_probs=17.2
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhh
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSK 52 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRsk 52 (144)
..+..++..|..--.+|-..|+.|..++..|+..
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555443
No 64
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=71.53 E-value=17 Score=26.18 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHH---HHHHhHHHHhh
Q 032236 41 GLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR---SEFQELRS---TLQQQQDDVTA 98 (144)
Q Consensus 41 ~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR---sEfqeLRt---tLqqQ~e~~ta 98 (144)
.+.++|..=+.+|..||.....||-+==+.|+.||.+|- +..+-||. -|..+++++..
T Consensus 29 QVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456788888899999999998888776677777776654 34444444 23455555443
No 65
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=70.65 E-value=8.3 Score=23.35 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 60 YRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 60 Yr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
+.+|++.|-.++|.=++.|+.-+++.+..+..--.++.+.+.
T Consensus 35 ~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~~l~ 76 (115)
T 3zrx_A 35 RADEIGILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTPLT 76 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 578999999999988888887776644444433333444443
No 66
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=70.47 E-value=22 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=24.4
Q ss_pred HhHhHH-hHHHHHHHHHHHHHHHHHHHhhhHH
Q 032236 25 IAELNE-SRAELLNRIQGLKQDLQNWRSKLDT 55 (144)
Q Consensus 25 i~ELne-Sr~ELL~Rvq~LK~DLq~WRskLDt 55 (144)
+.||.+ |-.||...+..||.+|-+-|...-|
T Consensus 7 a~ELR~~s~eEL~~~L~eLK~ELf~LRfq~at 38 (124)
T 4a17_U 7 VFKLRTQTEEQLVGELGKLQTELSQLRIAKIA 38 (124)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455554 6799999999999999998876543
No 67
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.47 E-value=12 Score=28.45 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 032236 59 IYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 59 tYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L 100 (144)
....|+..|...|..| ..+|.+...-++.|.++++++|++|
T Consensus 43 ~~~~e~~~L~~~l~eE-~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKE-NELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp THHHHHHTHHHHHHHT-TSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333 2344555555556666666666655
No 68
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=69.93 E-value=43 Score=27.16 Aligned_cols=82 Identities=17% Similarity=0.288 Sum_probs=52.7
Q ss_pred hhHHhHhHHhHHHHHHHHHH----------HHHHHHHHH---hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-
Q 032236 22 GSKIAELNESRAELLNRIQG----------LKQDLQNWR---SKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS- 87 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~----------LK~DLq~WR---skLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRt- 87 (144)
+..++++.+.=.++|.+... |.+.|-.-+ ..+.+|-.+|.--+--|..+|..+|.|-...++||..
T Consensus 372 eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGE 451 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544445544432 344443333 3467888888888888999999999887777887764
Q ss_pred --HHHHhHHHHhhhhhhc
Q 032236 88 --TLQQQQDDVTASLRNL 103 (144)
Q Consensus 88 --tLqqQ~e~~ta~L~nL 103 (144)
+|.+++++..+.+..+
T Consensus 452 ~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 452 ITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 4556666666666543
No 69
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.44 E-value=48 Score=29.16 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=44.3
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHh---H
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKK------TLSVEVEQLRSEFQELRSTLQQQ---Q 93 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~------~LnsEVeqLRsEfqeLRttLqqQ---~ 93 (144)
.+|-+|.+.+.+++.+++.|+.+ | +....+++.+|+ .|-.|+..|+.++++|...+.+- +
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~----r-------n~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKK----L-------NSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777776666665543 2 223334444443 46677888888888777665544 3
Q ss_pred HHHhhhhhhcccccCC
Q 032236 94 DDVTASLRNLGLQDFS 109 (144)
Q Consensus 94 e~~ta~L~nL~lqd~~ 109 (144)
...-..|-||=-.+++
T Consensus 102 ~~~l~~iPN~~~~~vP 117 (485)
T 3qne_A 102 RSKINQVGNIVHESVV 117 (485)
T ss_dssp HHHHTTSCCCCCTTSC
T ss_pred HHHHHhCCCCCCccCC
Confidence 3444445555555655
No 70
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=69.37 E-value=21 Score=25.51 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=11.6
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQN 48 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~ 48 (144)
....+|.+....|+.-...|...|+.
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 71
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=69.36 E-value=23 Score=23.95 Aligned_cols=69 Identities=12% Similarity=0.269 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 32 RAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTD---MKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~d---LK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
-.+.+..|+.++.++..-+.+++ +++....++.. --..+..+++.|..++..+-..|+..++.+.....
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~-~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVE-EVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888777 55555555421 01234555666666666666666666555544443
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=68.64 E-value=15 Score=30.98 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=18.1
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHH
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQNWR 50 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WR 50 (144)
+..+..+|.+|.+...+|-..|..++.++..+.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555554
No 73
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=67.97 E-value=20 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 61 RDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 61 r~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
..++..||..|..+++.+|..+...+..|+
T Consensus 94 ~~~~e~Lr~~L~~d~EelR~~l~p~~~el~ 123 (165)
T 1gs9_A 94 SKELQAAQARLGADMEDVRGRLVQYRGEVQ 123 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544443333333
No 74
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=67.52 E-value=9.8 Score=30.34 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=39.7
Q ss_pred CcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032236 14 KKENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYR 61 (144)
Q Consensus 14 rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr 61 (144)
-.+.+..+..+|.+|...-.+|.+++..+.-|+.|.|-+..-.+...+
T Consensus 57 ~~~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~ 104 (213)
T 4ani_A 57 TAEELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAE 104 (213)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999999999999998887776554
No 75
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=67.50 E-value=22 Score=22.92 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=14.9
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWR 50 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WR 50 (144)
++.-|.++...=.++. +.-+.|+..|-
T Consensus 7 L~~il~eiRaQYE~ia---~knr~EaE~~y 33 (77)
T 3trt_A 7 CTAAMRDVRQQYESVA---AKNLQEAEEWY 33 (77)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHhHHHHHHHH
Confidence 3445555554444444 44567777774
No 76
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=67.47 E-value=31 Score=24.54 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHh
Q 032236 32 RAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLS-----VEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln-----sEVeqLRsEfqeLRttLqqQ 92 (144)
--+...||..|+.-+..|+.-++..+..++.-..+....+. .-|+++|..+.+|+..-+..
T Consensus 74 np~Q~~~l~~l~~~~~~~~~~~~~~i~l~~~~~~~a~~~~~~~~Gk~~md~iR~~~~~~~~~E~~l 139 (164)
T 3va9_A 74 NPEQIAHIDELRLLTDMRMAQLGRVVELGPERMREALDILEQARVDRLTERIETSLSVLTRAEQAL 139 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888999999998766655542222222121 23566666666666554433
No 77
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=67.13 E-value=3.8 Score=31.48 Aligned_cols=36 Identities=6% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHhhHHHHHHHHHH----HHHHHHHHHhHHHHhhhhh
Q 032236 66 DMKKTLSVEVEQLRSEF----QELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 66 dLK~~LnsEVeqLRsEf----qeLRttLqqQ~e~~ta~L~ 101 (144)
+|++.|+.+++.+|..+ .+++..+.+.++++...|.
T Consensus 80 ~lr~~l~kd~ee~r~~l~py~~el~~~~~~~~e~lr~~L~ 119 (216)
T 2lem_A 80 WVRQEMNKDLEEVKQKVQPYLDEFQKKWKEDVELYRQKAS 119 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666666666665443 3445555555555554443
No 78
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.07 E-value=12 Score=24.12 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 032236 53 LDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 53 LDtQVKtYr~EL~dLK~~L 71 (144)
|..+|..++.|+..|+..|
T Consensus 42 L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 42 LQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 79
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.65 E-value=11 Score=24.09 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 55 TQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 55 tQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
..|..-+.|+.+||. +|+.|+.++++|++.|.
T Consensus 19 ~d~eaLk~E~~eLk~----k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKE----KYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 445566666666653 45667777777766654
No 80
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=66.45 E-value=32 Score=24.37 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=13.0
Q ss_pred HhhHHHHHHHHHHHHHH
Q 032236 70 TLSVEVEQLRSEFQELR 86 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLR 86 (144)
.|-.||++|+.++.+||
T Consensus 56 eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 56 DLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35678888888888865
No 81
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=65.95 E-value=3.7 Score=28.84 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKT 70 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~ 70 (144)
|-..|++||+||+.= ..|.+.|...+.+|..+++.
T Consensus 4 l~~~~~~l~~~~~~~-~~l~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 4 LNAQIPELKSDLEKA-SALNTKIRALQGSLENMSKL 38 (182)
T ss_dssp ---------CHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 455677777777753 34555665555555555543
No 82
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=65.50 E-value=37 Score=25.24 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=35.8
Q ss_pred HhHhHH-hHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHhhH-HHHHHH
Q 032236 25 IAELNE-SRAELLNRIQGLKQDLQNWRSKLDT-------QVKIYRDELTDMKKTLSV-EVEQLR 79 (144)
Q Consensus 25 i~ELne-Sr~ELL~Rvq~LK~DLq~WRskLDt-------QVKtYr~EL~dLK~~Lns-EVeqLR 79 (144)
+.||.+ |-.||...+..||.+|-+-|...-| +++.-|-.|.-+++-||. +.+.||
T Consensus 8 a~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgqlen~~rIr~vRRdIARi~Tvl~er~~~~lr 71 (124)
T 3iz5_c 8 AGELWNKSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQLR 71 (124)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455654 6899999999999999999876653 344444455555554442 334444
No 83
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=65.40 E-value=27 Score=25.53 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
-+.|+..-|..|..-++.|..-+..--..-+.|+..+++-|...++-++-++.||..++.
T Consensus 32 Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 32 VRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777888864433211112356666677777777777777777776665
No 84
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=65.09 E-value=78 Score=30.05 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHH
Q 032236 35 LLNRIQGLKQDLQNWRSKLDT 55 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDt 55 (144)
+-.+|..|.+++..=+..+..
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666554444443
No 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.08 E-value=33 Score=24.06 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=5.1
Q ss_pred HhhHHHHHHHH
Q 032236 70 TLSVEVEQLRS 80 (144)
Q Consensus 70 ~LnsEVeqLRs 80 (144)
+|+.|++.+++
T Consensus 38 ~L~~e~~e~~~ 48 (81)
T 2jee_A 38 SLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44445555333
No 86
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.74 E-value=14 Score=23.91 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 49 WRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 49 WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
|-..|..+|+....+-.. |..+|..|+.|.+-||.-|
T Consensus 24 ~~~~le~~~~~L~~~N~~----L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEA----LKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 444555555554444443 3345566666666666554
No 87
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=63.32 E-value=44 Score=24.94 Aligned_cols=53 Identities=15% Similarity=0.366 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHhHH
Q 032236 42 LKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSE----FQELRSTLQQQQD 94 (144)
Q Consensus 42 LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsE----fqeLRttLqqQ~e 94 (144)
|+-+|..-|--.|.=+|++-+--+.||.-++-||+++|.. ||++-++..++..
T Consensus 37 L~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK 93 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTT 93 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667778888888888888889999998876 4555554444433
No 88
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=63.30 E-value=11 Score=34.96 Aligned_cols=87 Identities=28% Similarity=0.419 Sum_probs=57.6
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHhhHHHHHHHHH------HHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK---KTLSVEVEQLRSE------FQELR 86 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK---~~LnsEVeqLRsE------fqeLR 86 (144)
.++.-|+++|.++++-|.+|-.+||+.+.-. ...++-.+.|..=..|+- .+| ..|++||.. |.+|+
T Consensus 10 ~dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~s~-~~~~~l~~~yg~l~il~~l~ 84 (706)
T 3fhn_A 10 DDLLNINDRIKQVQNERNELASKLQNLKQSL----ASNDTEVALSEVIAQDIIEVGASV-EGLEQLRAKYGDLQILNKLE 84 (706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTCTTCCCCHHHHHHHHHSCSSH-HHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHhccccH-HHHHHHHHHcCCcHHHHHHH
Confidence 4677899999999999999999999999765 444444444443333331 122 468888865 46676
Q ss_pred HHHHHhH---------HHHhhhhhhccccc
Q 032236 87 STLQQQQ---------DDVTASLRNLGLQD 107 (144)
Q Consensus 87 ttLqqQ~---------e~~ta~L~nL~lqd 107 (144)
+.+++|. +++.+.|..|..|.
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (706)
T 3fhn_A 85 KVAVQQTQMQAGVDKLDSFERQLDELAEQP 114 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6666553 34455555555554
No 89
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=63.03 E-value=23 Score=22.85 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=19.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 69 KTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 69 ~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
..||..|.+|.++...||+.++.=++.
T Consensus 14 ~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777655543
No 90
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=62.50 E-value=35 Score=23.51 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=18.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhhhH
Q 032236 28 LNESRAELLNRIQGLKQDLQNWRSKLD 54 (144)
Q Consensus 28 LneSr~ELL~Rvq~LK~DLq~WRskLD 54 (144)
.+.+..+|.++|+.|+.|+..-|+.++
T Consensus 18 ~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 18 HSQLLTQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344567777777777777777666554
No 91
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=62.35 E-value=27 Score=27.04 Aligned_cols=24 Identities=8% Similarity=0.368 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
+....+.|+..+|+....|++.++
T Consensus 61 ~~lR~~Ae~eN~rkR~~ke~~~~~ 84 (197)
T 1dkg_A 61 GILRVKAEMENLRRRTELDIEKAH 84 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544
No 92
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=62.29 E-value=44 Score=24.55 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLS---VEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~Ln---sEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
=|.+..+.+++|.+- ++...+.|..+++.|..... ..+.-|+..|-..+...+.|+--++.+-..+
T Consensus 21 qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V 89 (112)
T 1x79_B 21 QLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQV 89 (112)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999886 88889999999999987664 3567788999999999999988888776554
No 93
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.18 E-value=2 Score=31.23 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=54.1
Q ss_pred CcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHH--Hhhh---HHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 14 KKENITPVGSKIAELNESRAELLNRIQGLKQDLQNW--RSKL---DTQVKIYRDE-LTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 14 rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~W--RskL---DtQVKtYr~E-L~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
..+.+.-+-.+|..|.--+..|..|+..|.-.|..- |+.. .|.|=-|..= .+..+...-.+|++|+.|...||.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999998888652 2222 2233222221 233444556889999999999888
Q ss_pred HHHH
Q 032236 88 TLQQ 91 (144)
Q Consensus 88 tLqq 91 (144)
.++.
T Consensus 90 ~v~~ 93 (100)
T 1go4_E 90 LLRA 93 (100)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7754
No 94
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=61.99 E-value=32 Score=22.95 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=39.4
Q ss_pred HHhHhHH-hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 24 KIAELNE-SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 24 ki~ELne-Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
++.||.+ |..||...+..||++|-+-|...-| |.|.+ .+.+-..|.++.-+.|-|.+.
T Consensus 9 K~~elr~~s~eEL~~~L~elk~ELf~LR~q~at---------gql~n--~~~ir~vRr~IARi~Tvl~er 67 (72)
T 3v2d_2 9 QLEEARKLSPVELEKLVREKKRELMELRFQASI---------GQLSQ--NHKIRDLKRQIARLLTVLNEK 67 (72)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHT---------TCCCC--TTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCC--cHHHHHHHHHHHHHHHHHHHH
Confidence 4566655 6899999999999999988875433 33322 255666666677666666543
No 95
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=61.94 E-value=25 Score=23.40 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=36.6
Q ss_pred hHhHH-hHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 26 AELNE-SRAELLNRIQGLKQDLQNWRSKLDT--QVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 26 ~ELne-Sr~ELL~Rvq~LK~DLq~WRskLDt--QVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
.||.+ |..||...+..||++|-+-|...-| |+.. .+.+-..|.++.-+.|-|.+.
T Consensus 7 ~elr~~s~~EL~~~l~elk~ELf~LR~q~atggql~n------------~~~ir~vRr~IARi~Tvl~er 64 (71)
T 1vq8_V 7 QEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPEN------------PGRIKELRKAIARIKTIQGEE 64 (71)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccC------------hHHHHHHHHHHHHHHHHHHHH
Confidence 34443 7789999999999999998877665 2211 134555666666666665543
No 96
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=61.33 E-value=42 Score=28.68 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=47.3
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhh---h
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTA---S 99 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta---~ 99 (144)
.+|-+|.+-+.+++.+++.|+.+ |..+-.++...+.. ++=...|-.|+..|+.++++|...+.+-.+.+.. .
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~----~n~~sk~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHE----RNKIAVEIGKRRKK-GEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTS-CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67778888888888888777654 44444444432211 0112356667777777777776666554444444 4
Q ss_pred hhhcccccCC
Q 032236 100 LRNLGLQDFS 109 (144)
Q Consensus 100 L~nL~lqd~~ 109 (144)
|-|+=-.+++
T Consensus 106 ipN~~~~~vP 115 (455)
T 2dq0_A 106 LPNITHPSVP 115 (455)
T ss_dssp SCCCCCTTSC
T ss_pred CCCCCCccCC
Confidence 4444445554
No 97
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=61.31 E-value=9.4 Score=26.55 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=26.4
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQD 45 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~D 45 (144)
.+.-|+.||+-|+.-|.-++.||.+|-+|
T Consensus 22 EI~EID~Ki~nL~~mR~ivldRlA~lEqd 50 (72)
T 2xu6_A 22 EIRDIEVEVENLRQKKEKLLGKIANIEQN 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46678999999999999999999999886
No 98
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=58.80 E-value=59 Score=24.93 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 032236 63 ELTDMKKTL 71 (144)
Q Consensus 63 EL~dLK~~L 71 (144)
.|.+++..|
T Consensus 180 ~l~~~~~~L 188 (219)
T 4e81_A 180 ALTALETAL 188 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 99
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=58.79 E-value=21 Score=25.57 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 032236 74 EVEQLRSEFQELRSTL 89 (144)
Q Consensus 74 EVeqLRsEfqeLRttL 89 (144)
||+.|+.+.++|+..|
T Consensus 19 e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 19 EIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 100
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=58.66 E-value=38 Score=22.65 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=34.0
Q ss_pred HHhHHHHHHHHHHHHHHHH--HHHhhhHHH-HHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHH
Q 032236 29 NESRAELLNRIQGLKQDLQ--NWRSKLDTQ-VKIYRDELTDMKKTLSV----EVEQLRSEFQELRST 88 (144)
Q Consensus 29 neSr~ELL~Rvq~LK~DLq--~WRskLDtQ-VKtYr~EL~dLK~~Lns----EVeqLRsEfqeLRtt 88 (144)
-+.|.+|=+=|-.+++-|. .+..+|... .+..+..|.+|+..|.. ..+.++.-+.+|...
T Consensus 3 ~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~ 69 (113)
T 1ud0_A 3 PRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKV 69 (113)
T ss_dssp -CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHH
Confidence 3456666666666666665 466666543 44566777777777752 344444444444433
No 101
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=57.69 E-value=97 Score=27.15 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=15.9
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQD 45 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~D 45 (144)
.+|-+|.+.+.+++.+++.|+..
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~ 59 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKL 59 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777666553
No 102
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=57.52 E-value=32 Score=27.54 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=34.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHH------hhhhhhcccccCCCC
Q 032236 46 LQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDV------TASLRNLGLQDFSGD 111 (144)
Q Consensus 46 Lq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~------ta~L~nL~lqd~~~d 111 (144)
|+.=-+.|.+|+.+...|+..|++. +..|+.......+.+.++.+.+ -.-|..|...++-.+
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~q----l~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl~V~~~~ed 92 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQ----IDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNVRVHKSYED 92 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEECCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCcEEEEEEEc
Confidence 3334455667777777777655543 3445555555566666666543 334555666665444
No 103
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=55.92 E-value=1e+02 Score=26.87 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=40.3
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELT-------DMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~-------dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
.+|-+|.+.+.++..+++.|+.. |..+-.++...+..=. +-...|-.|+..|+.++++|...+.+-.+.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~----rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEE----KEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655543 3333334433221100 011245556666666666665555443333
Q ss_pred Hhh---hhhhcccccCC
Q 032236 96 VTA---SLRNLGLQDFS 109 (144)
Q Consensus 96 ~ta---~L~nL~lqd~~ 109 (144)
+.. .|-|+=-.+++
T Consensus 146 l~~~l~~iPN~~~~~vP 162 (501)
T 1wle_A 146 FYLRALRLPNQTHPDVP 162 (501)
T ss_dssp HHHHHTTSCCCCCTTCC
T ss_pred HHHHHHhCCCCCCCCCC
Confidence 333 44444444544
No 104
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=55.56 E-value=42 Score=22.15 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=38.6
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLD---------------------TQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLD---------------------tQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
.-.+...|+.....|...++.|+.++..=..-++ .-+......|..-+..+..+|+.|.
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le 85 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666666666665554332221 1234445555555555555555555
Q ss_pred HHHHHHHHHHHHhHHHH
Q 032236 80 SEFQELRSTLQQQQDDV 96 (144)
Q Consensus 80 sEfqeLRttLqqQ~e~~ 96 (144)
.....++..+.+-+..+
T Consensus 86 ~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 86 RQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555554444433
No 105
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=55.44 E-value=37 Score=21.93 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=12.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 032236 70 TLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRttLq 90 (144)
.|.+|++.|...+..|++.||
T Consensus 24 aleselqalekklaalksklq 44 (48)
T 1g6u_A 24 ALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666554
No 106
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=55.42 E-value=22 Score=25.57 Aligned_cols=30 Identities=13% Similarity=0.407 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 75 VEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 75 VeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
|+..-.+++..+.+|+.+...+.+.+.+|+
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~ 40 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLE 40 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333334444444444444444444444443
No 107
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=54.82 E-value=61 Score=27.30 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=45.4
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhh---h
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTA---S 99 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta---~ 99 (144)
.+|.+|.+.+.+++.+++.|+.. |..+-.++.. +. ++=...|-.++..|+.++++|...+.+-.+.+.. .
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~----~n~~sk~i~~-~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTE----RNQVAKRVPK-AP--PEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHSSS-SC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh-hc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888888888777654 3344444432 10 0122345566777777777766655554444444 3
Q ss_pred hhhcccccCC
Q 032236 100 LRNLGLQDFS 109 (144)
Q Consensus 100 L~nL~lqd~~ 109 (144)
|-|+=-.+++
T Consensus 101 ipN~~~~~vp 110 (421)
T 1ses_A 101 VPLPPWPGAP 110 (421)
T ss_dssp CCCCCCTTSC
T ss_pred CCCCCCCCCC
Confidence 4444444444
No 108
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.64 E-value=17 Score=23.07 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=19.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 48 NWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 48 ~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
.|-..|...|..+..+-. .|..+|..|+.|...|+.-|
T Consensus 22 ~~~~~Le~~v~~L~~~n~----~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNS----ELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 344555556655544433 34456666666666665443
No 109
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=54.47 E-value=35 Score=20.94 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 032236 60 YRDELTDM 67 (144)
Q Consensus 60 Yr~EL~dL 67 (144)
+++++..+
T Consensus 45 ~~~~I~~~ 52 (60)
T 3htk_A 45 IRDEVIKK 52 (60)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 110
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=54.38 E-value=51 Score=24.76 Aligned_cols=20 Identities=10% Similarity=0.333 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 032236 36 LNRIQGLKQDLQNWRSKLDT 55 (144)
Q Consensus 36 L~Rvq~LK~DLq~WRskLDt 55 (144)
|.+|..|+.++..=-..++.
T Consensus 22 lr~ia~l~r~~~~i~~~~n~ 41 (171)
T 2p2u_A 22 LAEIATIDRKVGEIEAQMNE 41 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333
No 111
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=54.35 E-value=48 Score=22.56 Aligned_cols=50 Identities=16% Similarity=0.320 Sum_probs=27.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 032236 48 NWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTA 98 (144)
Q Consensus 48 ~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta 98 (144)
.=+++|..++...+..+.++|.-.-.|+.. |.....==..|++-.++++-
T Consensus 14 ~e~~~l~~e~dn~~~~~edfk~KyE~E~~~-R~~~E~d~~~LrkdvD~a~l 63 (86)
T 3swk_A 14 NDKARVEVERDNLAEDIMRLREKLQEEMLQ-REEAENTLQSFRQDVDNASL 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHH
Confidence 346677777777777777777777776642 32222222334455554443
No 112
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=54.26 E-value=51 Score=22.80 Aligned_cols=57 Identities=9% Similarity=0.287 Sum_probs=33.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
+.|..++..|+..-.+...-=..|+-.|...- ...|..+++-|..-|+++..|+..+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p---~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAP---LTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55556666666666666666666666555542 3456666666666666666655543
No 113
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=54.04 E-value=48 Score=22.88 Aligned_cols=59 Identities=8% Similarity=0.273 Sum_probs=35.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqq 91 (144)
+.|..++..|+..-.+...-=..|+-.|...- ...|..+|+-|..-|+++..|+..+++
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p---~~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIP---PQSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC---TTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666665566555556665555442 345667777777777777666665554
No 114
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=53.57 E-value=44 Score=22.62 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHH---------HHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 032236 30 ESRAELLNRIQGLKQDL---------QNWRSKLDTQVKIYRDELTDMKKTLSVE 74 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DL---------q~WRskLDtQVKtYr~EL~dLK~~LnsE 74 (144)
.....|..-|+.|+.++ .-| .||+-++..-..||..+++.|++|
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeFAKW-aKL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNYAKW-TKNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556666677777765 446 578888888888888888888776
No 115
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.08 E-value=47 Score=21.99 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTA 98 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta 98 (144)
+=.+++.||.|..+|..+++.--..++. .-.-...+..||..|..-++-|-.-|-.=.+.+..
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~-~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKA-AEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999998877643222221 11122334555555555555554444333333333
No 116
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=52.77 E-value=49 Score=22.14 Aligned_cols=35 Identities=11% Similarity=0.335 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKK 69 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~ 69 (144)
|.+...+|..-|.+=......+++.|+..|+.|..
T Consensus 6 l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~ 40 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 40 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666777788888777776653
No 117
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.76 E-value=48 Score=30.44 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=14.9
Q ss_pred chhhHHhHhHHh-HHHHHHHHHHHHHHHHH
Q 032236 20 PVGSKIAELNES-RAELLNRIQGLKQDLQN 48 (144)
Q Consensus 20 pi~~ki~ELneS-r~ELL~Rvq~LK~DLq~ 48 (144)
|=+=+|+.|-.- -..|..||..||..|.+
T Consensus 46 PSGCrLQglLdkqErDltkrINELKnqLEd 75 (562)
T 3ghg_A 46 PSGCRMKGLIDEVNQDFTNRINKLKNSLFE 75 (562)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CcccchhhhHHhhcCcHHHHHHHHHHHHHH
Confidence 444455554333 33466666666664443
No 118
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=51.87 E-value=13 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=25.5
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQD 45 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~D 45 (144)
.|.-|+.||+.|+.-|.-++.||.+|-++
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~lEqd 206 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANIEQN 206 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45668999999999999999999998775
No 119
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=51.31 E-value=22 Score=24.77 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=17.4
Q ss_pred HHhHhHHhHHHHHHHHHHHHHHHHHHH
Q 032236 24 KIAELNESRAELLNRIQGLKQDLQNWR 50 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~DLq~WR 50 (144)
-++|..+||..|-.||-.|-.-|..|+
T Consensus 26 LLaEy~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 26 ILAEYESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 466777888888877766555444433
No 120
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.47 E-value=71 Score=23.32 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=35.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLGL 105 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~l 105 (144)
||+.=-.+|...|.+|+.-+...++-.|+.+-.|..|+..||.+ .+.+...|+.|++
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~----~~~l~~~iReLEq 63 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI----KEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33444456667777777777777777777777777777665543 3344455555554
No 121
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=50.25 E-value=59 Score=22.33 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=41.0
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHH--HHhhhHHH-HHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHH
Q 032236 26 AELNESRAELLNRIQGLKQDLQN--WRSKLDTQ-VKIYRDELTDMKKTLSV----EVEQLRSEFQELRSTL 89 (144)
Q Consensus 26 ~ELneSr~ELL~Rvq~LK~DLq~--WRskLDtQ-VKtYr~EL~dLK~~Lns----EVeqLRsEfqeLRttL 89 (144)
.++-+.|.+|=+=|-.+++-|.+ +..+|+.. .+.....|.+|+..|.. ..+.++.-+.+|...+
T Consensus 14 re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~ 84 (120)
T 2p32_A 14 LVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLA 84 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHH
Confidence 45666777777777777777776 77777654 45567777778877763 3455555555544443
No 122
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=49.92 E-value=47 Score=21.11 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELT------DMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRN 102 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~------dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~n 102 (144)
..++.+.+.|..|+..-+..++.=++..+.=+. +-...+...++.|+..+..|..........+...|..
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~ 114 (119)
T 3uun_A 39 KDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMD 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999888876665544332 2345677778889999999998888888877777754
No 123
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=49.72 E-value=50 Score=25.64 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=39.8
Q ss_pred HHhHhHHhH-HHHHHHH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032236 24 KIAELNESR-AELLNRI------QGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELR 86 (144)
Q Consensus 24 ki~ELneSr-~ELL~Rv------q~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLR 86 (144)
.+.+|.++- ..|-.-| +.+..++..+++.+.. +......|.++|..++..+++++.=..+.+
T Consensus 42 eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~-ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~ 110 (192)
T 2p22_C 42 EIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQ-LEENFEDLHEQKDKVQALLENARILESKYV 110 (192)
T ss_dssp HHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777774 5555554 3445666666555543 367777788888888887777665555553
No 124
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=49.49 E-value=49 Score=21.17 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 33 AELLNRIQGLKQDLQNWRSKLDTQVKIYRDELT------DMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~------dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
..++.+.+.|..|+...+..++.=++..+.=+. +-...+...+..|+..+..|..........+...|..+
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~~ 115 (118)
T 3uul_A 39 KEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALMEL 115 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999888876665544331 22445777788888889998888888887777776544
No 125
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=49.45 E-value=67 Score=22.72 Aligned_cols=38 Identities=24% Similarity=0.511 Sum_probs=27.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhh---HHHHHHHHHH
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTLS---VEVEQLRSEF 82 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~Ln---sEVeqLRsEf 82 (144)
++.|=|.--.-.+|+-++||+.|+..|. +||+.|.+++
T Consensus 37 elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 37 ELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555666667778888899999998874 5676666654
No 126
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=49.10 E-value=1.1e+02 Score=28.64 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 032236 52 KLDTQVKIYRDELTDMK 68 (144)
Q Consensus 52 kLDtQVKtYr~EL~dLK 68 (144)
.+..++...+.++..++
T Consensus 882 ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 882 ELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 127
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=48.69 E-value=46 Score=26.21 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=8.9
Q ss_pred HHhHhHHhHHHHHHHHHHHHHH
Q 032236 24 KIAELNESRAELLNRIQGLKQD 45 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK~D 45 (144)
.|.+|+....+|-..+..++.+
T Consensus 227 ~l~~l~~~i~~l~~~l~~~~~~ 248 (357)
T 3rrk_A 227 AAARMKERARLAPEELVGIREE 248 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333
No 128
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=48.60 E-value=38 Score=22.18 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 60 YRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 60 Yr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
|=..|..-...|..|++.|+.+...|+..|.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445556677777777666665553
No 129
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=48.51 E-value=69 Score=23.59 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=39.5
Q ss_pred HhHhHH-hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 25 IAELNE-SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 25 i~ELne-Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
+.||.+ |..||...+..||.+|-+-|...- .|.| .+.+-..|.++.-+.|-|.+.
T Consensus 6 ~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~a---------tgql----~~~Ir~vRR~IARi~Tvl~er 61 (120)
T 3u5e_h 6 AYELRTKSKEQLASQLVDLKKELAELKVQKL---------SRPS----LPKIKTVRKSIACVLTVINEQ 61 (120)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHT---------TSSC----CTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---------HCCc----chhHHHHHHHHHHHHHHHHHH
Confidence 345544 678999999999999998886543 2333 566777777777777777654
No 130
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=48.49 E-value=51 Score=21.13 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 032236 54 DTQVKIYRDELTDMKK 69 (144)
Q Consensus 54 DtQVKtYr~EL~dLK~ 69 (144)
...|...+.||.+|+.
T Consensus 48 ~~~l~~~k~Ei~elrr 63 (77)
T 3trt_A 48 NDALRQAKQESTEYRR 63 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555544
No 131
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=48.19 E-value=94 Score=24.06 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=19.0
Q ss_pred HHHHHhhHHHHHHHHHH----HHHHHHHHHhHHHHhhhhh
Q 032236 66 DMKKTLSVEVEQLRSEF----QELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 66 dLK~~LnsEVeqLRsEf----qeLRttLqqQ~e~~ta~L~ 101 (144)
+||..|..-|+.||.-| .++|+.|.+.++.+...|.
T Consensus 147 elr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~ 186 (243)
T 2a01_A 147 EMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGG 186 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcc
Confidence 44555555555555555 3555555555555555443
No 132
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.02 E-value=79 Score=26.49 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 032236 38 RIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVE 74 (144)
Q Consensus 38 Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsE 74 (144)
.|..|+++.. .|+..++.++.|+.+++..|..|
T Consensus 11 ~~~~l~~~~~----~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 11 KIAALKEKIA----ALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 23445556666666666655544
No 133
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=47.60 E-value=35 Score=23.82 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=15.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Q 032236 68 KKTLSVEVEQLRSEFQELRSTLQQ 91 (144)
Q Consensus 68 K~~LnsEVeqLRsEfqeLRttLqq 91 (144)
-..|-.+|++|+.|++.||.-|.+
T Consensus 52 N~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 52 NERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777766654
No 134
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=47.46 E-value=40 Score=26.68 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=40.5
Q ss_pred HHhHhHH-hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 24 KIAELNE-SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 24 ki~ELne-Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
++.||.+ |..||..+|..||++|-+-|...-| |.|.+ .+.+-..|.++.-+.|-|.+..
T Consensus 66 Ka~ELR~lS~eEL~ekL~eLKkELFnLRfQkAT---------GQLeN--psrIR~VRRdIARIkTVLrEre 125 (173)
T 3bbo_Z 66 ELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSA---------RNEFK--SSDFRRMKKQVARMLTVKRERE 125 (173)
T ss_dssp CHHHHHHSCHHHHHHHHHHHTTHHHHHHHHHHH---------CCCSC--HHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCC--chHHHHHHHHHHHHHHHHHHHH
Confidence 4667665 7799999999999999998876443 22211 2456667777777777665543
No 135
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=46.92 E-value=66 Score=23.60 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 55 TQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 55 tQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
+||+..+.++..|+. +++.++.++.+|-.-+++..++-...+..|
T Consensus 6 ~~~~~lq~~~~ql~~----qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L 50 (112)
T 1x79_B 6 DQVKKLQLMLRQAND----QLEKTMKDKQELEDFIKQSSEDSSHQISAL 50 (112)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666654444 444455555555555555555555444444
No 136
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.15 E-value=66 Score=21.76 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHhHHHHhhhhhhc
Q 032236 59 IYRDELTDMKKTLSVEVEQL---RSEFQELRSTLQQQQDDVTASLRNL 103 (144)
Q Consensus 59 tYr~EL~dLK~~LnsEVeqL---RsEfqeLRttLqqQ~e~~ta~L~nL 103 (144)
.-+.||..-...|..|...| -.+..+.+..|..+...+...|.+|
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444 4666777777777777676666665
No 137
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=45.82 E-value=1e+02 Score=26.48 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 032236 63 ELTDMKKTL 71 (144)
Q Consensus 63 EL~dLK~~L 71 (144)
.+.+++..|
T Consensus 568 ~~~~~~~~l 576 (605)
T 4b9q_A 568 ALTALETAL 576 (605)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 138
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=45.31 E-value=31 Score=22.39 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=15.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032236 48 NWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEF 82 (144)
Q Consensus 48 ~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEf 82 (144)
.|-..|..+|.....|-.. |.+||++|+.++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~----L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYH----LENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3445566666665544443 334555555543
No 139
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=45.20 E-value=61 Score=21.71 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
.-..|=..|.+--..|-.|+++|+.+...|+..|.
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666777777778888888888888887765
No 140
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.79 E-value=8.7 Score=24.50 Aligned_cols=17 Identities=18% Similarity=0.559 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032236 53 LDTQVKIYRDELTDMKK 69 (144)
Q Consensus 53 LDtQVKtYr~EL~dLK~ 69 (144)
|..+|...+.|+..||.
T Consensus 41 L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 41 LASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444555444443
No 141
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.16 E-value=37 Score=23.21 Aligned_cols=18 Identities=44% Similarity=0.595 Sum_probs=9.0
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 032236 70 TLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRt 87 (144)
.|-.+|++|+.|+.-||.
T Consensus 54 ~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 54 RLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555543
No 142
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=44.09 E-value=84 Score=22.32 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=42.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 48 NWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 48 ~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
.=|..|..+....-.|..+|...|.+|-+.| .+..+++..|..+...+...|..|.
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l-~e~EE~~~~L~~~k~eLe~~l~el~ 89 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQDNL-ADAEERCDQLIKNKIQLEAKVKEMN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777788888888888887665 4778888888888777777777663
No 143
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=43.34 E-value=55 Score=21.89 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 032236 56 QVKIYRDELTDMKKTLSVE 74 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsE 74 (144)
||...+.|..-|+++|..|
T Consensus 18 qV~eL~qe~k~m~k~lEeE 36 (56)
T 2w6b_A 18 EVQELRQDNKKMKKSLEEE 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555444
No 144
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=42.63 E-value=1.3e+02 Score=24.22 Aligned_cols=46 Identities=15% Similarity=0.344 Sum_probs=31.9
Q ss_pred cchhhHHhHhHHhHHHHHHH-----HHHHHHHHHHHHhhhH-------HHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNR-----IQGLKQDLQNWRSKLD-------TQVKIYRDEL 64 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~R-----vq~LK~DLq~WRskLD-------tQVKtYr~EL 64 (144)
..|-.+...++..+.+.+.. |.-|++-+..|...+. .+.|.||.||
T Consensus 83 ~~i~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e~d~k~~~~~~K~~~~~~k~~r~el 140 (253)
T 2d1l_A 83 TRMCMRHRSIEAKLRQFSSALIDCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEI 140 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666654 4567888888888887 6788888887
No 145
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=42.13 E-value=45 Score=20.83 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=23.2
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhh
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskL 53 (144)
.-+.||++++.+|=.||-+|-.-|.+-...|
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999988887665544433
No 146
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=42.10 E-value=39 Score=28.47 Aligned_cols=83 Identities=23% Similarity=0.454 Sum_probs=47.4
Q ss_pred hhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh-
Q 032236 22 GSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASL- 100 (144)
Q Consensus 22 ~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L- 100 (144)
-.+|-+|.+.+.++..+++.|+.+ |..+-.++...+.. ++=...|-.|+..|+.++++|...+.+-.+.+...|
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~----~n~~sk~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSE----RNKLSKEIGKLKRE-GKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTTGGGSS-CSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888776654 33333333321110 001235667788888888777776655555444444
Q ss_pred --hhcccccCC
Q 032236 101 --RNLGLQDFS 109 (144)
Q Consensus 101 --~nL~lqd~~ 109 (144)
-|+=--+++
T Consensus 104 ~ipN~~~~~vp 114 (425)
T 2dq3_A 104 WIPNLPHPSVP 114 (425)
T ss_dssp TSCCCCCTTSC
T ss_pred hCCCCCCCCCC
Confidence 444344444
No 147
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.06 E-value=1.6e+02 Score=27.15 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhH
Q 032236 78 LRSEFQELRSTLQQQQ 93 (144)
Q Consensus 78 LRsEfqeLRttLqqQ~ 93 (144)
++++||.|-..|--|+
T Consensus 143 q~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 143 QLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 148
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=41.98 E-value=77 Score=23.21 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 032236 54 DTQVKIYRDELTDMKKTLSVEVEQ 77 (144)
Q Consensus 54 DtQVKtYr~EL~dLK~~LnsEVeq 77 (144)
+.|..+|+.=+-.|+.+|--|.-|
T Consensus 38 eaQAaTCNqTV~tL~~SL~kekaq 61 (99)
T 3ni0_A 38 ETQANSCNLTVVTLQESLEKKVSQ 61 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999988444
No 149
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.90 E-value=45 Score=20.37 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRSE 81 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRsE 81 (144)
|...-=+||-.=++.|-.||++||+=
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44444456777777788888888753
No 150
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=41.56 E-value=35 Score=24.27 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=12.4
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHH
Q 032236 27 ELNESRAELLNRIQGLKQDLQNWR 50 (144)
Q Consensus 27 ELneSr~ELL~Rvq~LK~DLq~WR 50 (144)
...+--..|-.+|+.|..+|..||
T Consensus 93 ~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 93 KEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334445555555555555555
No 151
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=41.54 E-value=87 Score=21.79 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=15.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKK 69 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~ 69 (144)
-|.+-...++.++..|+..|+.|..
T Consensus 27 ~l~e~E~~~~~e~~~~q~~i~~lE~ 51 (95)
T 3mov_A 27 RIQELEDLLAKEKDNSRRMLTDKER 51 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444666777777777766543
No 152
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=41.36 E-value=72 Score=20.82 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
|..||...+..||++|-+-|...-| |.|-+ .+.+-..|.++.-+.|-|.+.
T Consensus 10 s~~EL~~~l~elk~ELf~LR~q~at---------gql~n--~~~ir~vRr~IARi~Tvl~er 60 (67)
T 2zjr_V 10 QATDFAKEIDARKKELMELRFQAAA---------GQLAQ--PHRVRQLRREVAQLNTVKAEL 60 (67)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHH---------SCCCC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---------CCCcc--cHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999888864432 12211 245566666777776666543
No 153
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=41.00 E-value=77 Score=21.94 Aligned_cols=55 Identities=7% Similarity=0.308 Sum_probs=30.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKI-YRDELTDMKKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKt-Yr~EL~dLK~~LnsEVeqLRsEfqeLRttL 89 (144)
..+.||..-++.|..+|.+-+..+.. ++. --.||..=| .-|..|+.++..|+.-+
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i-~e~~~~~EI~~Rk----~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIV-MKRDENEDVSGRE----AQVKNIKQQLDALKLRF 91 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH-HHTSTTCCCHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 56678888888888888776666655 221 112222222 23445555555555544
No 154
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=40.99 E-value=65 Score=20.14 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=25.8
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHHHH----HHhh
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDLQN----WRSK 52 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~----WRsk 52 (144)
++..+......++....+|-..+..|+..+.. |.+.
T Consensus 10 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~ 49 (93)
T 4ioe_A 10 TPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGA 49 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 44556667777788888888888888777765 7763
No 155
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=40.64 E-value=74 Score=20.72 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQ 92 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ 92 (144)
|-.||...+..||++|-+-|...-| |.|-+ .+.+-..|.++.-+.|-|.+.
T Consensus 10 s~~EL~~~l~elk~ELf~LR~q~at---------gql~n--~~~ir~vRr~IARi~Tvl~er 60 (66)
T 1r73_A 10 TDEELKNLLEEKKRQLMELRFQLAM---------GQLKN--TSLIKLTKRDIARIKTILRER 60 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH---------TCCCC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc---------cCccC--cHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999999888864332 22211 245666677777777766554
No 156
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=40.47 E-value=38 Score=20.57 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRs 80 (144)
|...-=+||-.=+..|..||..||+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333344555556666677777764
No 157
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=40.44 E-value=98 Score=22.05 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=32.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHhhHH
Q 032236 29 NESRAELLNRIQGLKQDLQNWRSKL-DTQVKIYRDELTDMKKTLSVE 74 (144)
Q Consensus 29 neSr~ELL~Rvq~LK~DLq~WRskL-DtQVKtYr~EL~dLK~~LnsE 74 (144)
.+.=.+++.+|+.|.+.|.+=-.-| .--+++|++.|..|+..|+.-
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~ 103 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAER 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888777654444 235788888888887776643
No 158
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=40.34 E-value=87 Score=21.46 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=11.9
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQ 47 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq 47 (144)
..|..|.--..+|..++..+-.+++
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~ 28 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLS 28 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555544444
No 159
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.19 E-value=15 Score=24.64 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=19.2
Q ss_pred cchhhHHhHhH----HhHHHHHHHHHHH
Q 032236 19 TPVGSKIAELN----ESRAELLNRIQGL 42 (144)
Q Consensus 19 ~pi~~ki~ELn----eSr~ELL~Rvq~L 42 (144)
.-+++|++|+- -+|.||+.|+++-
T Consensus 14 ~ELQaKLaE~GAPi~g~REElvdRLk~Y 41 (58)
T 2do5_A 14 QELQAKLAEIGAPIQGNREELVERLQSY 41 (58)
T ss_dssp HHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcccccHHHHHHHHHHH
Confidence 35788898884 4599999999875
No 160
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.65 E-value=1.2e+02 Score=22.86 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhHHHHhhhhhhc
Q 032236 54 DTQVKIYRDELTDMKKTLSVEVEQLRSEFQELR---STLQQQQDDVTASLRNL 103 (144)
Q Consensus 54 DtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLR---ttLqqQ~e~~ta~L~nL 103 (144)
++|.-+|+.=+-.|+.+|--|..|-...+++|+ .+|++++.+..+.+..|
T Consensus 45 eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 45 EAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999888776444444444 23444555555544444
No 161
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=39.58 E-value=2e+02 Score=25.36 Aligned_cols=49 Identities=12% Similarity=0.331 Sum_probs=31.4
Q ss_pred HhhhHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 032236 50 RSKLDTQVKIYRDELTDMK---KTLSVEVEQLRSEFQELRSTLQQQQDDVTA 98 (144)
Q Consensus 50 RskLDtQVKtYr~EL~dLK---~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta 98 (144)
+..++..+..+..++..++ ..+..++++|+...++++..|.+-.+.+.+
T Consensus 347 ~~~i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 398 (695)
T 2j69_A 347 REAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQAR 398 (695)
T ss_dssp HHHHHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666665555554 345667778887788887777776655443
No 162
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=39.57 E-value=65 Score=23.81 Aligned_cols=28 Identities=14% Similarity=0.353 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 74 EVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 74 EVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
++.+|=++++.++..|+.++...+..+-
T Consensus 72 ~y~~l~k~Y~~~~keLd~~ik~qekiId 99 (119)
T 3etw_A 72 QYQELASKYEDALKKLEAEMEQQKAVIS 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554444433
No 163
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.51 E-value=57 Score=28.10 Aligned_cols=9 Identities=11% Similarity=0.106 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 032236 36 LNRIQGLKQ 44 (144)
Q Consensus 36 L~Rvq~LK~ 44 (144)
|.+|++++.
T Consensus 47 l~elsn~ts 55 (409)
T 1m1j_C 47 LQQATNSTG 55 (409)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344433
No 164
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=39.24 E-value=33 Score=25.60 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=31.1
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQL 78 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqL 78 (144)
-||.+|--+-..=+.++.....+|+.=..-...+.++++.|=.-|+..-..|.-||..|
T Consensus 15 ~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~l 73 (115)
T 4gwp_A 15 DIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLL 73 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555544333345566677777666666665555555443
No 165
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=39.05 E-value=91 Score=21.32 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 032236 35 LLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskL 53 (144)
|=..|..|..+..+|+.+|
T Consensus 4 L~k~i~~l~~E~eel~~kl 22 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKM 22 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 166
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.92 E-value=79 Score=21.97 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 032236 71 LSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 71 LnsEVeqLRsEfqeLRttLq 90 (144)
+-.+|+.|..|-..|+..|.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554443
No 167
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=38.61 E-value=1.4e+02 Score=23.19 Aligned_cols=66 Identities=9% Similarity=0.179 Sum_probs=39.2
Q ss_pred HhHhHHhHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 25 IAELNESRAELLNRIQ-GLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq-~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
|..|++-=++|..+.. .++.-+-.=.+-|+.-++.++++|..=+..|..+++.|..+.+.|...+.
T Consensus 14 l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~ 80 (174)
T 2p22_A 14 LQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQID 80 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443 33333333445556666788888777777777777777777766665543
No 168
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=38.54 E-value=1.4e+02 Score=23.32 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 032236 42 LKQDLQNWRSKLDTQVKIYRDELTDMKK 69 (144)
Q Consensus 42 LK~DLq~WRskLDtQVKtYr~EL~dLK~ 69 (144)
++.+|..-...+....+.++.-|..|+.
T Consensus 71 ~~~~l~~l~~~i~~~~~~i~~~Lk~l~~ 98 (267)
T 1dn1_B 71 TKEELEELMSDIKKTANKVRSKLKSIEQ 98 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 169
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=38.42 E-value=1.4e+02 Score=23.11 Aligned_cols=42 Identities=14% Similarity=0.087 Sum_probs=22.2
Q ss_pred hHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 032236 23 SKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK 68 (144)
Q Consensus 23 ~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK 68 (144)
..|..|..-.+.|-.||..|+.+|..+...++ ..++|+.-|+
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e----~l~DEl~aLq 109 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTE----RLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 35555555555666666666666655544333 2344444443
No 170
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=38.06 E-value=57 Score=21.12 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhH
Q 032236 31 SRAELLNRIQGLKQDLQNWRSKLD 54 (144)
Q Consensus 31 Sr~ELL~Rvq~LK~DLq~WRskLD 54 (144)
|-.||...+..||++|-+-|...-
T Consensus 10 s~~EL~~~l~elk~Elf~LR~q~a 33 (63)
T 3r8s_Y 10 SVEELNTELLNLLREQFNLRMQAA 33 (63)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999998887553
No 171
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=38.00 E-value=25 Score=18.65 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHH--HHHHHHHHHHHhhHHHHHHH
Q 032236 38 RIQGLKQDLQNWR-SKLDTQVKI--YRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 38 Rvq~LK~DLq~WR-skLDtQVKt--Yr~EL~dLK~~LnsEVeqLR 79 (144)
.|..|..-+.... +.++..+.. ..+|++.|-.++|.=++.|+
T Consensus 8 pl~~l~~~~~~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l~ 52 (56)
T 2asw_A 8 PIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLK 52 (56)
T ss_dssp HHHHHHHHHHHHHTTCTTCCCTTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 3444444333332 344444332 34666666666665554444
No 172
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=37.11 E-value=1.4e+02 Score=22.82 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=30.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032236 49 WRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVT 97 (144)
Q Consensus 49 WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~t 97 (144)
=|.+++.-.=.|-.--..+++....||+..+.+|.+.+..+...+..+.
T Consensus 157 ~rkkl~~~rLdyD~~k~k~~k~~eeEle~A~~~fe~~~e~~~~~m~~l~ 205 (256)
T 1zww_A 157 HLKKLEGRRLDFGYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLL 205 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333333333334455678899999999888887777766544
No 173
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=37.07 E-value=1.3e+02 Score=22.49 Aligned_cols=96 Identities=9% Similarity=0.149 Sum_probs=70.2
Q ss_pred CCcCCccchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHH---
Q 032236 13 PKKENITPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEF-QELRST--- 88 (144)
Q Consensus 13 ~rk~~~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEf-qeLRtt--- 88 (144)
+.-.+..-++..|.++-+.+.++-.....+..++..=+.+...+.+.+++.+..|...|-.=.+.-|.|| ..-|+.
T Consensus 10 ~~i~~~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~elf~k~Kt~~l~ 89 (171)
T 2p2u_A 10 VIVADIRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLNKTEMFKDRKSLDLG 89 (171)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC---CCBCS
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCCeEEEeC
Confidence 5566677788888888888888877777778888777778888899999999999998888888888887 533310
Q ss_pred ------------H---HHhHHHHhhhhhhcccccC
Q 032236 89 ------------L---QQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 89 ------------L---qqQ~e~~ta~L~nL~lqd~ 108 (144)
+ +.-.+.+-..|+.+|+.+.
T Consensus 90 ~G~v~~R~~~~~v~~~~~~~~~vle~Lk~~gl~~~ 124 (171)
T 2p2u_A 90 FGTIGFRLSTQIVQMSKITKDMTLERLRQFGISEG 124 (171)
T ss_dssp SCBCCCCCCCCCCCCTTCCHHHHHHHHHHTTCCTT
T ss_pred CEEEEEEeCCCccccccCCHHHHHHHHHHCCcHhh
Confidence 0 0123556677777787763
No 174
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=36.87 E-value=80 Score=20.03 Aligned_cols=39 Identities=18% Similarity=0.451 Sum_probs=31.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 66 DMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 66 dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
+|-.....=++|+..-|+.|...|-..+++..+.|-+|+
T Consensus 6 dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE 44 (48)
T 3ci9_A 6 DLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLE 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344445555788999999999999999999999998886
No 175
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=36.45 E-value=13 Score=26.22 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=23.5
Q ss_pred HhHhHH-hHHHHHHHHHHHHHHHHHHHhhh
Q 032236 25 IAELNE-SRAELLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 25 i~ELne-Sr~ELL~Rvq~LK~DLq~WRskL 53 (144)
+.||.+ |..||..++..||++|-+-|...
T Consensus 5 a~ELR~~S~eEL~~~L~eLK~ELf~LRfq~ 34 (86)
T 3jyw_X 5 AYELRTKSKEQLASQLVDLKKELAELKVQK 34 (86)
T ss_dssp HHHHHTSCHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 68999999999999999988765
No 176
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=36.29 E-value=53 Score=20.75 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 54 DTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 54 DtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
-.+|..|=+++.+==..|..|+..|+.+...|+.
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666665555555666666655555443
No 177
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=36.24 E-value=56 Score=23.75 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=37.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHhHHHHhhhhhh
Q 032236 45 DLQNWRSKLDTQVKIYRDELTDMKKTLSVEVE-QLRSEFQELRSTLQQQQDDVTASLRN 102 (144)
Q Consensus 45 DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVe-qLRsEfqeLRttLqqQ~e~~ta~L~n 102 (144)
++..+|..-+.+.+.|..+..+-......+++ .-..++++|++...+-.+.|-..|-+
T Consensus 47 EIe~yR~qkE~eFk~~e~~~~g~~~~~~~~~e~eT~~ki~~i~~~~~~~k~~Vv~~Ll~ 105 (119)
T 4efa_G 47 EIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGVQGELAEIKKIAEKKKDDVVKILIE 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------CTTSSSHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 78889999999999999888887777766664 33567777777777777777666543
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=36.21 E-value=2e+02 Score=25.38 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=29.3
Q ss_pred HHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 55 TQVKIYRDELT-DMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 55 tQVKtYr~EL~-dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
+.|+.|-+++. ++...|+..++..|.+++.+..--+.+...+.+.++.|.
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 668 (695)
T 2j69_A 618 NAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLK 668 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44444444444 456677777777777777666655555544444444443
No 179
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=36.06 E-value=2.3e+02 Score=24.97 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=26.9
Q ss_pred hhhHHhHhHHhHHHHHHHHHH-------HHH---HHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 032236 21 VGSKIAELNESRAELLNRIQG-------LKQ---DLQNWRSKLDTQVKIYRDELTDMKKTL 71 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~-------LK~---DLq~WRskLDtQVKtYr~EL~dLK~~L 71 (144)
|+..|.+|+..-.+|-++..+ |+. ..|.=...+...|+.|..+|..+...+
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 455566665555554332222 222 222224456667888888886665443
No 180
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=35.90 E-value=64 Score=19.70 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRSE 81 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRsE 81 (144)
|+..-=+||-.=+..|-.||..||+=
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44444456666677777888887764
No 181
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.56 E-value=1.2e+02 Score=21.55 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 032236 39 IQGLKQDLQNWRSKLDTQVKI 59 (144)
Q Consensus 39 vq~LK~DLq~WRskLDtQVKt 59 (144)
|..|+..++..|.+|+.+...
T Consensus 20 ~~~l~~~~~el~~~l~~~~~~ 40 (125)
T 1joc_A 20 IEKLQTKVLELQRKLDNTTAA 40 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555544433
No 182
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=34.56 E-value=67 Score=22.75 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 032236 51 SKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDV 96 (144)
Q Consensus 51 skLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ 96 (144)
.+|+.++-.|+.-+..|..-|++ .|+...+|-.|.-+||=|+|..
T Consensus 8 ~~Le~~~~e~k~kv~~LQ~eLdt-sE~VQrDFVkLSQsLQvqLE~I 52 (79)
T 1tu3_F 8 ATVEQLMFEEKNKAQRLQTELDV-SEQVQRDFVKLSQTLQVQLERI 52 (79)
T ss_dssp -------------CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543 5778889999999999888753
No 183
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=34.44 E-value=1.1e+02 Score=21.03 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhH
Q 032236 37 NRIQGLKQDLQNWRSKLD 54 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLD 54 (144)
.+++.||.|..+|-.+.+
T Consensus 9 kKm~~lk~e~e~a~drae 26 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAE 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777777766554
No 184
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.31 E-value=71 Score=19.37 Aligned_cols=27 Identities=4% Similarity=0.062 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRSEF 82 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRsEf 82 (144)
|+..-=+||-.=+..|-.||..||+=+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444444667777778888888887643
No 185
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=34.21 E-value=1.1e+02 Score=20.83 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHhHH
Q 032236 30 ESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQE-LRSTLQQQQD 94 (144)
Q Consensus 30 eSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqe-LRttLqqQ~e 94 (144)
+.|..++..|+.--.+...-=..|+-.|...- .=+..|..+|+-|..-|+++.. |+..+++=.+
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~-~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI-GDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56777888888888888877777777775540 0124578888888888888887 8777775443
No 186
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=34.06 E-value=61 Score=22.83 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=26.0
Q ss_pred hhhHHhHhHHhHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQ-GLKQDLQNWRSKLDTQVKIYR 61 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq-~LK~DLq~WRskLDtQVKtYr 61 (144)
+..+|=||+.-|..|=..+. .-|+-|..-+.-||.||++-.
T Consensus 25 LERqvYEL~kiqdkLPeklkaeYk~KL~~tk~~Ld~qv~SA~ 66 (78)
T 2lhr_A 25 LERQVYELEKLQEKLPEKYKAEYKKKLDQTRVELADQVKSAV 66 (78)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777666553 345566666666666666543
No 187
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=34.02 E-value=1.9e+02 Score=23.61 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH---------HHHH---------HHHHHHH---HHHHH
Q 032236 32 RAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVE---------VEQL---------RSEFQEL---RSTLQ 90 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsE---------VeqL---------RsEfqeL---RttLq 90 (144)
..-|=+|+..+|.+|..=+..+++ -+.|+.+|+..+..+ |..+ +-.++.| +..|+
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~----k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 379 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFR----RQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQ 379 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHH
Confidence 445667788888888776666554 456666666666433 2222 2333333 46788
Q ss_pred HhHHHHhhhhhhcccccCCC
Q 032236 91 QQQDDVTASLRNLGLQDFSG 110 (144)
Q Consensus 91 qQ~e~~ta~L~nL~lqd~~~ 110 (144)
.|.+-+-++|..||-.+.|.
T Consensus 380 ~q~~~~~~~~~~~~~~~~p~ 399 (406)
T 4dyl_A 380 AQQELLQTKLEHLGPGEPPP 399 (406)
T ss_dssp HHHHHHHHHHHTTTTSCCCC
T ss_pred HHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999887663
No 188
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=33.99 E-value=1.9e+02 Score=23.42 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHhhhH-HHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHH
Q 032236 49 WRSKLD-TQVKIYRDELTDMKKTLSVEVEQLRSE-FQELRSTLQQ 91 (144)
Q Consensus 49 WRskLD-tQVKtYr~EL~dLK~~LnsEVeqLRsE-fqeLRttLqq 91 (144)
+++|++ .+|..++.+...+-..+..||+....+ ..++|..|+.
T Consensus 296 ~~~K~~~~~~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~ 340 (366)
T 3dyt_A 296 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRL 340 (366)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 456667777777777777777777666 5566665543
No 189
>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural genomics, PROT structure initiative, PSI; 2.32A {Mus musculus} SCOP: a.204.1.2 PDB: 2q4p_A
Probab=33.95 E-value=1.2e+02 Score=22.68 Aligned_cols=37 Identities=5% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhh
Q 032236 35 LLNRIQGLKQDLQNWRS--KLDTQVKIYRDELTDMKKTLS 72 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRs--kLDtQVKtYr~EL~dLK~~Ln 72 (144)
|..|+..+-.+ -+|.. .....+.....|+++|...+.
T Consensus 34 Lqk~~~~~~~~-~dW~~~~~p~~l~~~L~EEvgEL~eai~ 72 (170)
T 2a3q_A 34 IRRLHAEFAAE-RDWEQFHQPRNLLLALVGEVGELAELFQ 72 (170)
T ss_dssp HHHHHHHHHHT-SCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc-CCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444322 37753 566677777788888877664
No 190
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=33.90 E-value=69 Score=23.06 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=23.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 032236 66 DMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLR 101 (144)
Q Consensus 66 dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~ 101 (144)
+.++.+..++++++.++..|-......++.+...|.
T Consensus 4 ~~~~~~~~~l~~~~~~l~~M~~~v~~~l~~a~~al~ 39 (227)
T 1t72_A 4 GGGMKLFKELEETKEQVIKMAKLVQEAIDKATEALN 39 (227)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777776666666665554
No 191
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=33.45 E-value=1.3e+02 Score=21.57 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=24.7
Q ss_pred HHHhhhHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHH
Q 032236 48 NWRSKLDTQVKIYRDELTD---MKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 48 ~WRskLDtQVKtYr~EL~d---LK~~LnsEVeqLRsEfqeL 85 (144)
.+-.-|..||..|+.-..- -|..++.|.++|...+.-|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4456677899999876542 3566777777766655443
No 192
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.37 E-value=52 Score=22.72 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=15.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 65 TDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 65 ~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
..=|..|-.|+..|..+..++|..
T Consensus 69 ~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 69 TNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333556666777777777777654
No 193
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=33.35 E-value=2.1e+02 Score=23.92 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=26.6
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032236 25 IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELR 86 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLR 86 (144)
|.-+.+--..|-+||+.|+.--+.-..-|..|+..|+ .|..++..|+-++..||
T Consensus 200 ~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~lkp~l~ql~ 253 (373)
T 3hhm_B 200 IQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYR--------EIDKRMNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhccChHHHHHH
Confidence 3445555556666666655444433344444444444 23344444555554443
No 194
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=33.30 E-value=63 Score=22.17 Aligned_cols=16 Identities=19% Similarity=0.381 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhh
Q 032236 38 RIQGLKQDLQNWRSKL 53 (144)
Q Consensus 38 Rvq~LK~DLq~WRskL 53 (144)
.|..|..+..+|..+|
T Consensus 5 ~v~~l~~E~eel~~kl 20 (71)
T 1uix_A 5 DVANLANEKEELNNKL 20 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555444
No 195
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.53 E-value=1.1e+02 Score=20.31 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=23.4
Q ss_pred HhHhHH-hHHHHHHHHHHHHHHHHHHHhhhH
Q 032236 25 IAELNE-SRAELLNRIQGLKQDLQNWRSKLD 54 (144)
Q Consensus 25 i~ELne-Sr~ELL~Rvq~LK~DLq~WRskLD 54 (144)
+.||.+ |..||...+..||.+|-+-|...-
T Consensus 3 ~~elr~~s~~EL~~~L~elk~ELf~LR~q~a 33 (72)
T 3j21_W 3 PSEIREMSIEEIDAKIRELRLQLAKERGLLT 33 (72)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 678999999999999999887654
No 196
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=32.35 E-value=1.7e+02 Score=22.37 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=46.1
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
-+++.+.+++-+.+....+..|++++..=|..|..-+..=.--- .-=..|..|+..||.++...|...+.++..
T Consensus 69 T~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~De-akI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 69 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDT-AKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777776666666655442111000 122457778888888888888877777653
No 197
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=32.16 E-value=62 Score=21.48 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=15.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhH
Q 032236 70 TLSVEVEQLRSEFQELRSTLQQQQ 93 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRttLqqQ~ 93 (144)
.|..+++.|..+...|+..++++.
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355666667777777776666543
No 198
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=31.84 E-value=1.2e+02 Score=20.38 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=28.2
Q ss_pred HHHh--hhHHHHHHHHHHHHHHHHHhhHHHH-H--HHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 48 NWRS--KLDTQVKIYRDELTDMKKTLSVEVE-Q--LRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 48 ~WRs--kLDtQVKtYr~EL~dLK~~LnsEVe-q--LRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
+|.. .....+.....|+++|...+..-.. + ...-...-+..|..++.||--.|.+|.
T Consensus 31 dw~~~~~~~~~~~~L~eE~gEl~e~~~~~~~~~~~~~~~~~~~~~~l~eElgDvL~~l~~lA 92 (111)
T 2oie_A 31 DWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVALA 92 (111)
T ss_dssp TCGGGCCHHHHHHHHHHHHHHHHHHHHTCCCCSSCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 6753 5566666666777776655431000 0 000001224556667777666666554
No 199
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=31.83 E-value=83 Score=21.53 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 71 LSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 71 LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
|..-|+.|..|..+|...|+.+++.
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee 28 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEE 28 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555554444
No 200
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.82 E-value=2.5e+02 Score=24.15 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 032236 73 VEVEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 73 sEVeqLRsEfqeLRttLqqQ~e 94 (144)
+.|..|+..+..+++.|++...
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~ 126 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQ 126 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3555566655555555554433
No 201
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.81 E-value=92 Score=19.20 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 032236 61 RDELTDMKKTLSVEVEQLRSEFQ 83 (144)
Q Consensus 61 r~EL~dLK~~LnsEVeqLRsEfq 83 (144)
=+||-.=+..|-.||.+||+.+.
T Consensus 10 VEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 10 VEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc
Confidence 34555556666667777766543
No 202
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=31.79 E-value=1.8e+02 Score=22.49 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=47.6
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTA 98 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta 98 (144)
.|+-..|..|.-+ +|-.=++.= +|+.++-..--.+|+..+.++..+ .++..++.++...+.++|..|+.+++.++.
T Consensus 29 ~~LP~~L~~LS~~--eL~~LL~~~-~dlL~~~v~~l~~~q~~~~~~e~l-~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~ 104 (192)
T 2p22_C 29 IPLPEGINLLSSK--EIIDLIQTH-RHQLELYVTKFNPLTDFAGKIHAF-RDQFKQLEENFEDLHEQKDKVQALLENARI 104 (192)
T ss_dssp CCCSSGGGSCTTH--HHHHHHHHC-HHHHHHHGGGGSCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHhCCHH--HHHHHHhCh-HHHHHHHHHhchhHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4566667777544 333222221 233333333223577778888888 777777888888888888888888876554
Q ss_pred h
Q 032236 99 S 99 (144)
Q Consensus 99 ~ 99 (144)
-
T Consensus 105 L 105 (192)
T 2p22_C 105 L 105 (192)
T ss_dssp H
T ss_pred H
Confidence 3
No 203
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=31.71 E-value=1.6e+02 Score=22.39 Aligned_cols=49 Identities=8% Similarity=0.263 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
.++..+.|+..|-.....|+-+|...+..++.-|=+++..+-+.+-+.-
T Consensus 4 ~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP~FW 52 (193)
T 3kyp_A 4 DFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFW 52 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCccHH
Confidence 4678899999999999999999999999999999888887776554443
No 204
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=31.07 E-value=86 Score=19.12 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRSE 81 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRsE 81 (144)
|...-=+||-.-+..|-.||..||+=
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444467777777777888877753
No 205
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.57 E-value=1.2e+02 Score=20.31 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 032236 51 SKLDTQVKIYRDELTDMK 68 (144)
Q Consensus 51 skLDtQVKtYr~EL~dLK 68 (144)
.....+++.|+.-|+.|.
T Consensus 24 ~~~~~~l~~~q~~i~~lE 41 (86)
T 1x8y_A 24 DSLARERDTSRRLLAEKE 41 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777776666653
No 206
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=30.28 E-value=90 Score=19.01 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRs 80 (144)
|+..-=+||-.=+..|..||..||+
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445555556666677776664
No 207
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=30.10 E-value=76 Score=21.61 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
-|+.||+-=-.--..+-..|+.|..|-..|+..+.
T Consensus 26 AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433222223344455555555555555544
No 208
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=29.96 E-value=1.8e+02 Score=22.00 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=18.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHhh
Q 032236 29 NESRAELLNRIQGLKQDLQNWRSKLD-TQVKIYRDELTDMKKTLS 72 (144)
Q Consensus 29 neSr~ELL~Rvq~LK~DLq~WRskLD-tQVKtYr~EL~dLK~~Ln 72 (144)
.+.+.+|=+=|-.++.-|.++..++. ...+.....|.+++..|.
T Consensus 142 ~e~kn~le~~i~~~~~~l~~~~~~~~~~~k~~i~~~l~~~~~wl~ 186 (227)
T 1u00_A 142 AEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQ 186 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333332 233445555556665554
No 209
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=29.67 E-value=81 Score=22.15 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032236 54 DTQVKIYRDELTDMKKTLSVEVEQLRSEFQEL 85 (144)
Q Consensus 54 DtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeL 85 (144)
.++-..++....+.-.+|++=--+||.|++-|
T Consensus 39 ~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~L 70 (86)
T 3r84_A 39 ESVKPQFENHVKQFYERLDKSTTQLRKEIQLL 70 (86)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666654
No 210
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=29.62 E-value=2.4e+02 Score=23.36 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---hhHHHHHH
Q 032236 32 RAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKT---LSVEVEQL 78 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~---LnsEVeqL 78 (144)
=..|..|+..+-..|++=|..++.|++..=.++-.|=+. ||.+|-..
T Consensus 73 a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~ 122 (463)
T 2d4y_A 73 AEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRM 122 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777888888888888888888888877777665544 56666544
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.58 E-value=3e+02 Score=24.39 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHhHHHHhh
Q 032236 48 NWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELR-STLQQQQDDVTA 98 (144)
Q Consensus 48 ~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLR-ttLqqQ~e~~ta 98 (144)
.---.|.+|-++|++-+..|+.-+-.|.+++..|.+.+- ..|+.|-+-+..
T Consensus 512 ~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~ 563 (592)
T 1f5n_A 512 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 563 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334568999999999999999999999999887776543 345554444433
No 212
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=29.19 E-value=1.6e+02 Score=21.09 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=21.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 032236 70 TLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLG 104 (144)
Q Consensus 70 ~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~ 104 (144)
-||.-++.|..|++.++..|......+...|..|+
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777777777777777777766654
No 213
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=29.08 E-value=31 Score=20.97 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 032236 35 LLNRIQGLK 43 (144)
Q Consensus 35 LL~Rvq~LK 43 (144)
|..||..|.
T Consensus 49 L~~ri~~Le 57 (70)
T 1zme_C 49 LQKDLNDKT 57 (70)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 214
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.41 E-value=1.1e+02 Score=20.90 Aligned_cols=9 Identities=33% Similarity=0.541 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 032236 39 IQGLKQDLQ 47 (144)
Q Consensus 39 vq~LK~DLq 47 (144)
|+.|+..|+
T Consensus 21 i~eLq~~L~ 29 (72)
T 3nmd_A 21 LRDLQYALQ 29 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 215
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.28 E-value=1.8e+02 Score=21.33 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=17.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 032236 46 LQNWRSKLDTQVKIYRDELTDMKKTLS 72 (144)
Q Consensus 46 Lq~WRskLDtQVKtYr~EL~dLK~~Ln 72 (144)
++..-..|..+++.+..|+.+||.-|-
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777776543
No 216
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=28.21 E-value=2.1e+02 Score=22.15 Aligned_cols=19 Identities=47% Similarity=0.648 Sum_probs=10.8
Q ss_pred CccchhhHHhHhHHhHHHH
Q 032236 17 NITPVGSKIAELNESRAEL 35 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~EL 35 (144)
|..-+.++|.+|.+|+..|
T Consensus 97 N~e~LksRL~~l~~sk~~L 115 (170)
T 3l4q_C 97 NSERLKSRIAEIHESRTKL 115 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666555
No 217
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=27.86 E-value=1.4e+02 Score=19.99 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=4.9
Q ss_pred HHHhhHHHHHHH
Q 032236 68 KKTLSVEVEQLR 79 (144)
Q Consensus 68 K~~LnsEVeqLR 79 (144)
|..+...|..++
T Consensus 39 k~~i~~~i~e~~ 50 (113)
T 3lof_A 39 KKKVLDKCQEVI 50 (113)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 218
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=27.78 E-value=60 Score=21.09 Aligned_cols=50 Identities=24% Similarity=0.460 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHH
Q 032236 36 LNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVE-VEQLRSEFQELRST 88 (144)
Q Consensus 36 L~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsE-VeqLRsEfqeLRtt 88 (144)
+.|+..||.+|..|....-.+- --+--=.|+|. |.| |.++=.++..||..
T Consensus 3 me~~~~lk~~LK~WE~~F~~~~-GRkP~k~DIk~--~p~~I~~~YK~Y~~Lk~~ 53 (56)
T 2kmu_A 3 MERLRDVRERLQAWERAFRRQR-GRRPSQDDVEA--APEETRALYREYRTLKRT 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-CSCCCHHHHTT--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHc--CHHHHHHHHHHHHHHHhc
Confidence 5789999999999987664332 00000112221 334 77777777766654
No 219
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.61 E-value=3.1e+02 Score=29.68 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 032236 35 LLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDDVTASLRNLGL 105 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L~nL~l 105 (144)
-|.=|...+.=|..-|..+.++...|+.=|.-|+.+ +..|+.|+.++.+++-.|.+....+...|..+..
T Consensus 1897 yLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888889999999999999999999999887 7889999999999999999888888888877764
No 220
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=27.56 E-value=1.7e+02 Score=20.88 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=42.1
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 25 IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
+..|+++=+.|-++..+|+ .|+ |.+-..|-+++.+|.++|+..++.--.-+-=||..|+-+-++
T Consensus 22 ~d~Lq~~~~~L~~~f~~L~----sWq---Dqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~~ 85 (94)
T 3fx7_A 22 KELLREEVNSLSNHFHNLE----SWR---DARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEED 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc----hHh---hHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHHH
Confidence 3445555555555555552 577 677788888888888888888876666666666666555443
No 221
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=27.40 E-value=2.1e+02 Score=21.95 Aligned_cols=91 Identities=18% Similarity=0.352 Sum_probs=51.7
Q ss_pred CccchhhHHhHhHHhHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHH--------HHH----HHHHHhhHHHHHHHH
Q 032236 17 NITPVGSKIAELNESRAELL----NRIQGLKQDLQNWRSKLDTQVKIYRD--------ELT----DMKKTLSVEVEQLRS 80 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL----~Rvq~LK~DLq~WRskLDtQVKtYr~--------EL~----dLK~~LnsEVeqLRs 80 (144)
....+..+|.+|...-.++. +++..+.-|+.|.|-+..-.+...+. +|. +|..+|.+-- .-..
T Consensus 36 ~~~~~~~~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~-~~~~ 114 (197)
T 1dkg_A 36 QVDPRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVAD-KANP 114 (197)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC------
T ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc-cccc
Confidence 44555666766665555554 68888999999999998888766553 222 2333332100 0001
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhcccccC
Q 032236 81 EFQELRSTLQQQQDDVTASLRNLGLQDF 108 (144)
Q Consensus 81 EfqeLRttLqqQ~e~~ta~L~nL~lqd~ 108 (144)
.+..|+.-+.-=...+...|...|+.-.
T Consensus 115 ~~~~l~~Gv~~~~~~l~~~L~~~Gv~~i 142 (197)
T 1dkg_A 115 DMSAMVEDIELTLKSMLDVVRKFGVEVI 142 (197)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 2333444444334456667888888764
No 222
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=27.39 E-value=89 Score=22.10 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 032236 34 ELLNRIQGLKQDLQN 48 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~ 48 (144)
++..|++.||.++.+
T Consensus 3 ~~~~~~~~Lk~El~~ 17 (106)
T 2aze_B 3 HMGGRLEGLTQDLRQ 17 (106)
T ss_dssp ---CHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 344566666666544
No 223
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=27.24 E-value=1.2e+02 Score=18.91 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=21.5
Q ss_pred ccchhhHHhHhHHhHHHHHHHHHHHHHHHHH----HHhh
Q 032236 18 ITPVGSKIAELNESRAELLNRIQGLKQDLQN----WRSK 52 (144)
Q Consensus 18 ~~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~----WRsk 52 (144)
+..+......+.....+|-..+..|+..+.. |.+.
T Consensus 11 ~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~ 49 (99)
T 3zbh_A 11 PEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGA 49 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 3445555666666666666666666666554 7664
No 224
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.21 E-value=3.2e+02 Score=24.00 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 032236 73 VEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 73 sEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
..++.|+..++.|...+..+.+.
T Consensus 175 ~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777766654
No 225
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=26.95 E-value=51 Score=20.89 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=14.8
Q ss_pred HHhHhHHhHHHHHHHHHHHH
Q 032236 24 KIAELNESRAELLNRIQGLK 43 (144)
Q Consensus 24 ki~ELneSr~ELL~Rvq~LK 43 (144)
-++|..+|+..|-.||-.|-
T Consensus 24 Llae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 24 LLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887664
No 226
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=26.71 E-value=2.4e+02 Score=22.35 Aligned_cols=19 Identities=11% Similarity=0.534 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 032236 35 LLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskL 53 (144)
++.+...+..++..++..+
T Consensus 404 ~l~~~~~~~~el~~~~~~~ 422 (476)
T 1hci_A 404 QMNQLKQYEHNIINYKNNI 422 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 3444444444444444443
No 227
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=26.63 E-value=1.7e+02 Score=23.13 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLR 79 (144)
.|-.+|..|+..+..|+.+ ....+.|+..+|+....|++.++
T Consensus 63 ~l~~~l~~l~~e~~el~d~----~lR~~AEfeN~RkR~~rE~e~~~ 104 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHR----YLRLYADFENFRRRTRQEMEAAE 104 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777654 34566777777887777777766
No 228
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.53 E-value=1.4e+02 Score=19.54 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 032236 76 EQLRSEFQELRSTL 89 (144)
Q Consensus 76 eqLRsEfqeLRttL 89 (144)
+.++.+|.+++..|
T Consensus 89 ~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 89 ERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 229
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=26.31 E-value=51 Score=23.59 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 032236 79 RSEFQELRS 87 (144)
Q Consensus 79 RsEfqeLRt 87 (144)
.+.|.|++.
T Consensus 39 ~~~~~e~~~ 47 (151)
T 2zdi_C 39 KAEVQTVRE 47 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 230
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.66 E-value=2e+02 Score=24.31 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=0.0
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQNWRSKL---DTQVKIYRDELTDMK 68 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskL---DtQVKtYr~EL~dLK 68 (144)
+...+.+|.+...+|...++.++.++..-..+| ++.-+.+-++|.+||
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 231
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.51 E-value=1.3e+02 Score=24.83 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=12.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q 032236 65 TDMKKTLSVEVEQLRSEFQELR 86 (144)
Q Consensus 65 ~dLK~~LnsEVeqLRsEfqeLR 86 (144)
.+..+.+..|+..||.|+..|+
T Consensus 74 ~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 74 METLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3334445556666666666554
No 232
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.41 E-value=1.5e+02 Score=19.60 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=42.6
Q ss_pred chhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHHHHHhhHHHHHH
Q 032236 20 PVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLD---------------------TQVKIYRDELTDMKKTLSVEVEQL 78 (144)
Q Consensus 20 pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLD---------------------tQVKtYr~EL~dLK~~LnsEVeqL 78 (144)
.+-.++..|+.....|...++.|+.++..-..-++ .-+......|..-++.+..+++.|
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~l 89 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNAL 89 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666666665554433221 123444555555555555666666
Q ss_pred HHHHHHHHHHHHHhHHHHhhhh
Q 032236 79 RSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 79 RsEfqeLRttLqqQ~e~~ta~L 100 (144)
......++..+.+-+..+...|
T Consensus 90 e~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 90 ERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444444
No 233
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.27 E-value=1.6e+02 Score=19.83 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHH--hhhH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032236 33 AELLNRIQGLKQDLQNWR--SKLD-----TQVKIYRDELTDMKKTLSVEVEQLRSEFQELRSTLQ 90 (144)
Q Consensus 33 ~ELL~Rvq~LK~DLq~WR--skLD-----tQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRttLq 90 (144)
..|=.++..|+.=+-.+. .+++ ..--.|=.+|..-...|..+++.|+.+-+.|+..|+
T Consensus 19 ~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 19 NELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555543 1221 233456666666666666677777777666666554
No 234
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.23 E-value=1.8e+02 Score=21.11 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=6.1
Q ss_pred HhHHHHhhhhhhcc
Q 032236 91 QQQDDVTASLRNLG 104 (144)
Q Consensus 91 qQ~e~~ta~L~nL~ 104 (144)
++++=-=.+|++++
T Consensus 39 kERDFYF~KLRdIE 52 (106)
T 4e61_A 39 IEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 235
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=24.61 E-value=1.6e+02 Score=19.52 Aligned_cols=12 Identities=8% Similarity=0.191 Sum_probs=4.7
Q ss_pred HHHhhHHHHHHH
Q 032236 68 KKTLSVEVEQLR 79 (144)
Q Consensus 68 K~~LnsEVeqLR 79 (144)
|+.+...|..|+
T Consensus 34 k~~i~~~i~~l~ 45 (113)
T 1ud0_A 34 KQKILDKCNEII 45 (113)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 236
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=24.57 E-value=22 Score=27.86 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=31.4
Q ss_pred HHHHHHHhhHHH-HHHHHHHHHHHHHHHHhHHHHhhhhhhccccc
Q 032236 64 LTDMKKTLSVEV-EQLRSEFQELRSTLQQQQDDVTASLRNLGLQD 107 (144)
Q Consensus 64 L~dLK~~LnsEV-eqLRsEfqeLRttLqqQ~e~~ta~L~nL~lqd 107 (144)
..-|+..|+..+ ++++..+-.|+..|+..+......|..||-.-
T Consensus 280 ~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~lg~~~ 324 (360)
T 3t34_A 280 SEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGKPI 324 (360)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 556777887776 78899999999999999999999999999654
No 237
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=24.54 E-value=2.6e+02 Score=22.61 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=21.7
Q ss_pred hhhHHhHhHHhHHHHHHHHHHHHHHHH
Q 032236 21 VGSKIAELNESRAELLNRIQGLKQDLQ 47 (144)
Q Consensus 21 i~~ki~ELneSr~ELL~Rvq~LK~DLq 47 (144)
++..++.|++.+.+|..++..++.+|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788888888888888888887773
No 238
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.37 E-value=1.3e+02 Score=18.36 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 032236 56 QVKIYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 56 QVKtYr~EL~dLK~~LnsEVeqLRs 80 (144)
|+..-=+||-.=+..|-.||..||+
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444445666667777777777765
No 239
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=24.26 E-value=1.1e+02 Score=21.82 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=16.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 032236 69 KTLSVEVEQLRSEFQELRSTLQQQQDDVTASL 100 (144)
Q Consensus 69 ~~LnsEVeqLRsEfqeLRttLqqQ~e~~ta~L 100 (144)
+.++.++++++.++..|-.....++......|
T Consensus 3 ~~~~~~l~~l~~~l~~M~~~v~~~l~~a~~al 34 (216)
T 2i0m_A 3 NQFDLELHELEQSFLGLGQLVLETASKALLAL 34 (216)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555544444
No 240
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=24.15 E-value=1.6e+02 Score=24.46 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 032236 34 ELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMK 68 (144)
Q Consensus 34 ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK 68 (144)
|-..|+..|-++=+.|+.+ |..|..|...|.
T Consensus 264 EaA~RL~~Ldqqra~wq~r----~~~Y~~eR~~I~ 294 (332)
T 2es4_D 264 EAAARAAQMQQDDEAWQTR----YQAYAAERDRIA 294 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 4567999999999999877 567998877775
No 241
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.53 E-value=1.7e+02 Score=23.64 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=21.8
Q ss_pred HHHHHHHhhHHHHHHHHH--HHHHHHHHHHhHHHHhhhhhhccccc
Q 032236 64 LTDMKKTLSVEVEQLRSE--FQELRSTLQQQQDDVTASLRNLGLQD 107 (144)
Q Consensus 64 L~dLK~~LnsEVeqLRsE--fqeLRttLqqQ~e~~ta~L~nL~lqd 107 (144)
|.++.+.++..++.++.+ -....+-||+|++.+...|.+++-|-
T Consensus 375 l~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 375 LKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHh
Confidence 344444444444444433 23334446666666666666655443
No 242
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.30 E-value=5.9e+02 Score=27.64 Aligned_cols=61 Identities=20% Similarity=0.425 Sum_probs=31.5
Q ss_pred cchhhHHhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032236 19 TPVGSKIAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRS 87 (144)
Q Consensus 19 ~pi~~ki~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRt 87 (144)
.|...++++++..-.+...++...+..|+. |+..|..|+++... ...|.+.|+.++.....
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~----le~~l~~L~~~~~~----~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITA----LEKSIATYKEEYAT----LIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 677777777766666555566555555543 44444444444432 23344444444444333
No 243
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.17 E-value=2e+02 Score=20.19 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 032236 32 RAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDM--KKTLSVEVEQLRSEFQELRSTLQQQQDD 95 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dL--K~~LnsEVeqLRsEfqeLRttLqqQ~e~ 95 (144)
++.|-.||..|+.... .|+.++..++.+|... .+.+-.=+..| .+..|+|..=|.-+.-
T Consensus 3 ~~~L~~~i~~L~~q~~----~L~~ei~~~~a~L~~~~~~~~~~~hI~~L-h~YNeiKD~gq~L~g~ 63 (85)
T 3viq_B 3 KSQLESRVHLLEQQKE----QLESSLQDALAKLKNRDAKQTVQKHIDLL-HTYNEIRDIALGMIGK 63 (85)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHTCSSSCHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence 3455556655554432 4555555555555432 22333333333 4677888777665553
No 244
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=23.10 E-value=48 Score=28.79 Aligned_cols=29 Identities=28% Similarity=0.590 Sum_probs=23.3
Q ss_pred CCccchhhHHhHhHHhHHHHHHHHHHHHH
Q 032236 16 ENITPVGSKIAELNESRAELLNRIQGLKQ 44 (144)
Q Consensus 16 ~~~~pi~~ki~ELneSr~ELL~Rvq~LK~ 44 (144)
.++.-|+.+|.+.++-|.+|-.+||+.+.
T Consensus 9 ~DLl~id~~I~~i~~eRd~La~~lq~~~~ 37 (355)
T 3etv_A 9 DDLLNINDRIKQVQNERNELASKLQNLKQ 37 (355)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778999999999999999999999986
No 245
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.95 E-value=2.1e+02 Score=20.41 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 032236 42 LKQDLQNWRSKLDTQVKIYRDELTDMK 68 (144)
Q Consensus 42 LK~DLq~WRskLDtQVKtYr~EL~dLK 68 (144)
++.++..=...+..-++.++.-|..|.
T Consensus 47 ~~~~i~~l~~~i~~~~~~~~~~lk~l~ 73 (196)
T 1fio_A 47 LRHSLDNFVAQATDLQFKLKNEIKSAQ 73 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445554444444
No 246
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.92 E-value=2e+02 Score=20.20 Aligned_cols=57 Identities=14% Similarity=0.303 Sum_probs=30.8
Q ss_pred HhHhHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032236 25 IAELNESRAELLNRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELR 86 (144)
Q Consensus 25 i~ELneSr~ELL~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLR 86 (144)
.......+.+.+-| +.-|..|..-|.+|..++...+.||..|.+.+ +..+.-+.+|+
T Consensus 22 FgKrEaA~Ee~Yfr-qkekEqL~~LKkkl~~el~~h~~ei~~le~~i----~rhk~~i~~l~ 78 (84)
T 1gmj_A 22 FGKREQAEEERYFR-ARAKEQLAALKKHKENEISHHAKEIERLQKEI----ERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred cccHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhh
Confidence 33344444555444 23345566666666667777777776665544 34454444443
No 247
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=22.89 E-value=1.3e+02 Score=26.87 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=23.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHH
Q 032236 49 WRSKLDTQVKIYRDELTDMKKTLSVE---VEQLRSEFQELRS 87 (144)
Q Consensus 49 WRskLDtQVKtYr~EL~dLK~~LnsE---VeqLRsEfqeLRt 87 (144)
.+.+|..+.+....|+.+|+.-|+++ ..-.+.|+.+++.
T Consensus 455 e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~ 496 (514)
T 2inr_A 455 DIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKK 496 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777766 3344555555543
No 248
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=22.77 E-value=2.2e+02 Score=20.51 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=4.6
Q ss_pred hHHHHhhhhhh
Q 032236 92 QQDDVTASLRN 102 (144)
Q Consensus 92 Q~e~~ta~L~n 102 (144)
|...++..|.+
T Consensus 127 q~~~L~~kf~~ 137 (180)
T 1s94_A 127 QYSTISRKFVE 137 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 249
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=22.72 E-value=1.4e+02 Score=25.86 Aligned_cols=40 Identities=15% Similarity=0.387 Sum_probs=25.5
Q ss_pred HHHHHhhHH-HHHHHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 032236 66 DMKKTLSVE-VEQLRSEFQELRSTLQQQQDDVTASLRNLGL 105 (144)
Q Consensus 66 dLK~~LnsE-VeqLRsEfqeLRttLqqQ~e~~ta~L~nL~l 105 (144)
-|++.|+.. +.+.+..|-.|+..|++++......|..||-
T Consensus 297 ~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~ 337 (608)
T 3szr_A 297 CLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGV 337 (608)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455555544 3456666777777777777777777777764
No 250
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.57 E-value=2.2e+02 Score=20.43 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 032236 62 DELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 62 ~EL~dLK~~LnsEVeqLR 79 (144)
.+.-.-++.++.|||-|.
T Consensus 43 ~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 43 TKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555554
No 251
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=22.48 E-value=1.3e+02 Score=24.44 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=34.5
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhhH
Q 032236 27 ELNESRAELLNRIQGLKQDLQNWRSK---LDTQVKIYRDELTDMKKTLSV 73 (144)
Q Consensus 27 ELneSr~ELL~Rvq~LK~DLq~WRsk---LDtQVKtYr~EL~dLK~~Lns 73 (144)
+=-+-|+|||.=+...++-|..||.. =...+..+.++|......|+.
T Consensus 56 ~R~dlK~eLlKeLERq~~~L~~~~~~P~Vd~~~l~~~l~~l~~~~~~L~~ 105 (247)
T 2oez_A 56 EQIQLKSELAKDLEKQRLSYRHWLNVEGVDQEALNSLLNEIDVVHSQLMG 105 (247)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 33456899999999999999999976 224556666666666666654
No 252
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=22.25 E-value=1.4e+02 Score=21.08 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032236 59 IYRDELTDMKKTLSVEVEQLRSEFQELR 86 (144)
Q Consensus 59 tYr~EL~dLK~~LnsEVeqLRsEfqeLR 86 (144)
.|+.|...+ +.|...|.+|..|+...|
T Consensus 90 ~~~~e~~~~-~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 90 KYEKEKEKN-KALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 344443333 234445555555555444
No 253
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}
Probab=22.02 E-value=1.3e+02 Score=22.15 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 032236 35 LLNRIQGLKQDLQNWRSKL 53 (144)
Q Consensus 35 LL~Rvq~LK~DLq~WRskL 53 (144)
+..+|+.+=.+|-.||.+|
T Consensus 120 ~f~~l~~~~~eL~~~R~ql 138 (184)
T 3a98_A 120 RFLQVQSMMYDLMEWRSQL 138 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 254
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=21.94 E-value=1.9e+02 Score=21.33 Aligned_cols=17 Identities=6% Similarity=0.450 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 032236 56 QVKIYRDELTDMKKTLS 72 (144)
Q Consensus 56 QVKtYr~EL~dLK~~Ln 72 (144)
.+..|..+|..++..|.
T Consensus 252 ~l~~~~~~l~~~~~~l~ 268 (290)
T 3b1f_A 252 RIENFKQRLDEVSNLIK 268 (290)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 255
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.93 E-value=3e+02 Score=22.87 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 032236 74 EVEQLRSEFQELR 86 (144)
Q Consensus 74 EVeqLRsEfqeLR 86 (144)
.|.+|...+.+|+
T Consensus 41 ~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 41 FVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 256
>3lnr_A Aerotaxis transducer AER2; HAMP domain, poly-HAMP domains, signaling protein; 2.64A {Pseudomonas aeruginosa}
Probab=21.87 E-value=86 Score=22.94 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q 032236 59 IYRDELTDMKKTLSVEVEQL 78 (144)
Q Consensus 59 tYr~EL~dLK~~LnsEVeqL 78 (144)
.|......|..++|.=++.+
T Consensus 95 ~~~G~~~~l~~~vN~~~~~~ 114 (175)
T 3lnr_A 95 RLEGRAARIAKGVNELVAAH 114 (175)
T ss_dssp GCCTHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHhHHHH
Confidence 46666666666666666544
No 257
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.85 E-value=2.9e+02 Score=21.69 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=26.2
Q ss_pred hhhHHhHhHH-----hHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032236 21 VGSKIAELNE-----SRAELLNRIQGLKQDLQNWRSKLDTQV 57 (144)
Q Consensus 21 i~~ki~ELne-----Sr~ELL~Rvq~LK~DLq~WRskLDtQV 57 (144)
++.+|.+|.+ ...+.+.||..|+++|-..|..+..+-
T Consensus 176 l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~~~~ 217 (339)
T 4ev6_A 176 LEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANR 217 (339)
T ss_dssp HHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3445555543 256788999999999999888776554
No 258
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=21.36 E-value=2.2e+02 Score=19.97 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHhHH
Q 032236 32 RAELLNRIQGLKQDLQNWRSKLDT--QVKIYRDELTDMKKTL---------------SVEVEQLRSEFQELRSTLQQQQD 94 (144)
Q Consensus 32 r~ELL~Rvq~LK~DLq~WRskLDt--QVKtYr~EL~dLK~~L---------------nsEVeqLRsEfqeLRttLqqQ~e 94 (144)
...|-.|-+.|+.-...+|.+|+. ++-.|...+.++..-| -..|+.|...++.+...|..-..
T Consensus 84 ~~~l~~~w~~L~~~~~~R~~~Le~~~~l~qf~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~kh~~~~~el~~~~~ 163 (216)
T 1u5p_A 84 RETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 163 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344555666666666777777764 3344544444444333 24688888888888888876655
Q ss_pred H
Q 032236 95 D 95 (144)
Q Consensus 95 ~ 95 (144)
.
T Consensus 164 ~ 164 (216)
T 1u5p_A 164 A 164 (216)
T ss_dssp H
T ss_pred H
Confidence 4
No 259
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=21.28 E-value=1.7e+02 Score=18.73 Aligned_cols=36 Identities=11% Similarity=0.365 Sum_probs=21.4
Q ss_pred CccchhhHHhHhHHhHHHHHHHHHHHHHHH----HHHHhh
Q 032236 17 NITPVGSKIAELNESRAELLNRIQGLKQDL----QNWRSK 52 (144)
Q Consensus 17 ~~~pi~~ki~ELneSr~ELL~Rvq~LK~DL----q~WRsk 52 (144)
++..+......+.....+|-..+..|+..+ ..|.+.
T Consensus 8 ~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~ 47 (101)
T 3fav_A 8 DAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGA 47 (101)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchH
Confidence 445566666777777777777777776666 357654
No 260
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.20 E-value=1e+02 Score=21.47 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHHH
Q 032236 72 SVEVEQLRSEFQEL 85 (144)
Q Consensus 72 nsEVeqLRsEfqeL 85 (144)
+.++..|+.|++.|
T Consensus 20 ~~~i~~lkeel~~L 33 (109)
T 2wg5_A 20 LSKNYHLENEVARL 33 (109)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 261
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=21.20 E-value=2.2e+02 Score=23.26 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=19.1
Q ss_pred HHHHhhhHHHHHH----HHHHHHHHHHHhhHHHHHHH
Q 032236 47 QNWRSKLDTQVKI----YRDELTDMKKTLSVEVEQLR 79 (144)
Q Consensus 47 q~WRskLDtQVKt----Yr~EL~dLK~~LnsEVeqLR 79 (144)
++=|..+..+|+. -+..++++|...|-=|-||.
T Consensus 20 ~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt 56 (297)
T 3pev_B 20 AQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLT 56 (297)
T ss_dssp HHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCC
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhcccc
Confidence 3333334444443 45556778888877776663
No 262
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.07 E-value=1.8e+02 Score=21.44 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=23.3
Q ss_pred hHhHH-hHHHHHHHHHHHHHHHHHHHhhhHH
Q 032236 26 AELNE-SRAELLNRIQGLKQDLQNWRSKLDT 55 (144)
Q Consensus 26 ~ELne-Sr~ELL~Rvq~LK~DLq~WRskLDt 55 (144)
.||.+ |..||...|..||.+|-+-|...-|
T Consensus 7 ~ELR~~s~eEL~~~L~eLK~ELf~LRfq~at 37 (123)
T 2zkr_v 7 RDLRGKKKEELLKQLDDLKVELSQLRVAKVT 37 (123)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443 7789999999999999998876543
No 263
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=20.87 E-value=1.6e+02 Score=27.65 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=28.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHH
Q 032236 49 WRSKLDTQVKIYRDELTDMKKTLSVE---VEQLRSEFQELRSTL 89 (144)
Q Consensus 49 WRskLDtQVKtYr~EL~dLK~~LnsE---VeqLRsEfqeLRttL 89 (144)
.+.+|..+.+....++.+|+.-|+++ ..-.+.|+.+++...
T Consensus 697 e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~y 740 (767)
T 2xkj_E 697 EEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740 (767)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 56788888888888888888888887 344555555555443
No 264
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.84 E-value=1.3e+02 Score=24.24 Aligned_cols=44 Identities=16% Similarity=0.442 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032236 37 NRIQGLKQDLQNWRSKLDTQVKIYRDELTDMKKTLSVEVEQLRSEFQELRST 88 (144)
Q Consensus 37 ~Rvq~LK~DLq~WRskLDtQVKtYr~EL~dLK~~LnsEVeqLRsEfqeLRtt 88 (144)
.++..|++-|.-.|++|..=...|+.||.. | ...|..|++|=.+
T Consensus 7 ~~~~~~~~Ql~~F~~~L~~FA~kH~~eI~~-----d---p~fR~~F~~mc~s 50 (234)
T 3cuq_A 7 DQLAQMSKQLDMFKTNLEEFASKHKQEIRK-----N---PEFRVQFQDMCAT 50 (234)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHH-----C---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccc-----C---HHHHHHHHHHHHH
Confidence 356778899999999999999999988865 2 3578888888443
No 265
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=20.79 E-value=85 Score=20.90 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=12.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 032236 68 KKTLSVEVEQLRSEFQELRSTL 89 (144)
Q Consensus 68 K~~LnsEVeqLRsEfqeLRttL 89 (144)
...|-.++.+|+.++..|+..|
T Consensus 4 ~e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 4 DEELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666655555
No 266
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=20.55 E-value=4.9e+02 Score=23.74 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCCCCCcCCccchhhHHhHhHHhHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHhhHHHHHH
Q 032236 9 TPSVPKKENITPVGSKIAELNESRAELLNRI-------QGLKQDLQNWRSKLDTQVKIYR---DELTDMKKTLSVEVEQL 78 (144)
Q Consensus 9 ~p~~~rk~~~~pi~~ki~ELneSr~ELL~Rv-------q~LK~DLq~WRskLDtQVKtYr---~EL~dLK~~LnsEVeqL 78 (144)
.|+-|=.++=.-+..||.||.+-+.+=.-|. +.+-.+|.+-+.-+..|++.-. +|+..|.++|.+=..-+
T Consensus 83 ~~pDPLsPgE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~ 162 (526)
T 3iyk_A 83 EIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKIL 162 (526)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444445566778899999987665544443 2344577777776776666633 55566666655543333
Q ss_pred H---HHHHHHHHHHHHhHH
Q 032236 79 R---SEFQELRSTLQQQQD 94 (144)
Q Consensus 79 R---sEfqeLRttLqqQ~e 94 (144)
+ ..++.|..+|+++-.
T Consensus 163 ~~e~~~l~~L~~AL~kE~~ 181 (526)
T 3iyk_A 163 TEEDLQMRRLATALQKEIG 181 (526)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3 334555566655543
No 267
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=20.50 E-value=1.4e+02 Score=20.40 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHh
Q 032236 38 RIQGLKQDLQNWRS 51 (144)
Q Consensus 38 Rvq~LK~DLq~WRs 51 (144)
.+.+++.|++.++.
T Consensus 20 l~~gv~~~i~~Lk~ 33 (115)
T 3qfl_A 20 LHKGVKKNIEDLGK 33 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHH
Confidence 34444555554443
No 268
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.33 E-value=2.2e+02 Score=19.66 Aligned_cols=6 Identities=0% Similarity=0.180 Sum_probs=2.2
Q ss_pred HHHHHH
Q 032236 59 IYRDEL 64 (144)
Q Consensus 59 tYr~EL 64 (144)
.|+...
T Consensus 64 ~lk~K~ 69 (78)
T 3iv1_A 64 LLKKKD 69 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 269
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=20.18 E-value=22 Score=26.02 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 032236 59 IYRDELTDMKKTLSVEVEQLRS 80 (144)
Q Consensus 59 tYr~EL~dLK~~LnsEVeqLRs 80 (144)
.|++|++.|+.++|.=+.+|+.
T Consensus 210 ~~~~e~~~l~~~~n~~~~~L~~ 231 (233)
T 3vol_A 210 DYQGTFGQLKDFSNDTAQSLSR 231 (233)
T ss_dssp ----------------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHh
Confidence 4889999999999998888874
Done!