BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032238
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FZT|A Chain A, Solution Structure And Dynamics Of An Open B-Sheet,
Glycolytic Enzyme-Monomeric 23.7 Kda Phosphoglycerate
Mutase From Schizosaccharomyces Pombe
Length = 211
Score = 119 bits (298), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSG 61
YG+LQGLNK + +++G E V WRRSYDI PPNGESL+ +++ + Y++ I P + G
Sbjct: 96 YGDLQGLNKDDARKKWGAEQVQIWRRSYDIAPPNGESLKDTAERVLPYYKSTIVPHILKG 155
Query: 62 KHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLY-IYKEGRFMKR 111
+ V++AAHGNSLR++IM L+ LT +++ EL+TG+P++Y + K+G+++ +
Sbjct: 156 EKVLIAAHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDKDGKYVSK 206
>pdb|1XQ9|A Chain A, Structure Of Phosphoglycerate Mutase From Plasmodium
Falciparum At 2.6 Resolution
pdb|1XQ9|B Chain B, Structure Of Phosphoglycerate Mutase From Plasmodium
Falciparum At 2.6 Resolution
Length = 258
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 25/125 (20%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPPN-------------------------G 36
YG LQGLNK ETA++YG+E V WRRSYDIPPP
Sbjct: 100 YGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFT 159
Query: 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
E L+ ++ + ++ +HI P + + K VMVAAHGNSLR ++ +LD L+ +V+ L + TG
Sbjct: 160 ECLKDTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNIPTG 219
Query: 97 IPLLY 101
+PL+Y
Sbjct: 220 VPLVY 224
>pdb|1E58|A Chain A, E.Coli Cofactor-Dependent Phosphoglycerate Mutase
Length = 249
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 25/130 (19%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPPN-------------------------G 36
YG LQGLNK ETAE+YG E V WRR + + PP
Sbjct: 91 YGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLT 150
Query: 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
ESL + + + Y+ E I P+++SG+ V++AAHGNSLR+++ YLD ++ +E++ L + TG
Sbjct: 151 ESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTG 210
Query: 97 IPLLYIYKEG 106
+PL+Y + E
Sbjct: 211 VPLVYEFDEN 220
>pdb|1E59|A Chain A, E.Coli Cofactor-Dependent Phosphoglycerate Mutase
Complexed With Vanadate
Length = 249
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 25/130 (19%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPPN-------------------------G 36
YG LQGLNK ETAE+YG E V WRR + + PP
Sbjct: 91 YGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLT 150
Query: 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
ESL + + + Y+ E I P+++SG+ V++AAHGNSLR+++ YLD ++ +E++ L + TG
Sbjct: 151 ESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTG 210
Query: 97 IPLLYIYKEG 106
+PL+Y + E
Sbjct: 211 VPLVYEFDEN 220
>pdb|3KKK|A Chain A, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|B Chain B, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|C Chain C, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|D Chain D, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
Length = 258
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 25/124 (20%)
Query: 3 GELQGLNKQETAERYGKELVHGWRRSYDIPPPN-------------------------GE 37
G LQGLNK ETA++YG+E V WRRSYDIPPP E
Sbjct: 101 GSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTE 160
Query: 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGI 97
L+ ++ + ++ +HI P + + K VMVAAHGNSLR ++ +LD L+ +V+ L + TG+
Sbjct: 161 CLKDTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNIPTGV 220
Query: 98 PLLY 101
PL+Y
Sbjct: 221 PLVY 224
>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
Length = 274
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 25/125 (20%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPP-------------------------PNG 36
YG LQGLNK ETA +YG++ V WRRSYD+PP P+
Sbjct: 116 YGALQGLNKSETAAKYGEDKVLIWRRSYDVPPXSLDESDDRHPIKDPRYKHIPKRELPST 175
Query: 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
E L+ + + Y+ + I ++ GK V+VAAHGNSLR+++ Y D L+ ++V+ L + TG
Sbjct: 176 ECLKDTVARVIPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNIPTG 235
Query: 97 IPLLY 101
IPL+Y
Sbjct: 236 IPLVY 240
>pdb|3FDZ|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound
2,3-Diphosphoglyceric Acid And 3- Phosphoglyceric Acid
Length = 257
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 25/125 (20%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGES---------------------LE 40
YG L GLNK ETA +YG E V WRRSYD PPP E L
Sbjct: 98 YGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLT 157
Query: 41 MCSKQAVA----YFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
C K VA + E I P +++GK V++AAHGNSLR++I YLD ++ +++ L + G
Sbjct: 158 ECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNG 217
Query: 97 IPLLY 101
+PL+Y
Sbjct: 218 VPLVY 222
>pdb|3EZN|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b
pdb|3EZN|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b
pdb|3FDZ|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound
2,3-Diphosphoglyceric Acid And 3- Phosphoglyceric Acid
pdb|3GP3|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|C Chain C, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|D Chain D, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP5|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
And Vanadate
pdb|3GP5|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
And Vanadate
pdb|3GW8|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With Vanadate And Glycerol
pdb|3GW8|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With Vanadate And Glycerol
Length = 257
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 25/125 (20%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGES---------------------LE 40
YG L GLNK ETA +YG E V WRRSYD PPP E L
Sbjct: 98 YGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLT 157
Query: 41 MCSKQAVA----YFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
C K VA + E I P +++GK V++AAHGNSLR++I YLD ++ +++ L + G
Sbjct: 158 ECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNG 217
Query: 97 IPLLY 101
+PL+Y
Sbjct: 218 VPLVY 222
>pdb|3LNT|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound Malonic Acid
pdb|3LNT|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound Malonic Acid
Length = 250
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 25/125 (20%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGES---------------------LE 40
YG L GLNK ETA +YG E V WRRSYD PPP E L
Sbjct: 91 YGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLT 150
Query: 41 MCSKQAVA----YFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
C K VA + E I P +++GK V++AAHGNSLR++I YLD ++ +++ L + G
Sbjct: 151 ECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNG 210
Query: 97 IPLLY 101
+PL+Y
Sbjct: 211 VPLVY 215
>pdb|4EO9|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpm1 From
Mycobacterium Leprae
Length = 268
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 23/123 (18%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPP-------------------NGESLEMC 42
YG LQGL+K T RYG+E WRRSYD PPP G L C
Sbjct: 116 YGALQGLDKAVTKARYGEERFMAWRRSYDTPPPPIEKGSEFSQDADPRYTDIGGGPLTEC 175
Query: 43 SKQAVA----YFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIP 98
V YF + I P L++G+ V++ AHGNSLR+++ +LD+++ EV+ L + TGIP
Sbjct: 176 LADVVTRFLPYFTDVIVPDLRTGRTVLIVAHGNSLRALVKHLDEMSDDEVVGLNVPTGIP 235
Query: 99 LLY 101
L Y
Sbjct: 236 LRY 238
>pdb|1RII|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|C Chain C, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|D Chain D, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
Length = 265
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 67/123 (54%), Gaps = 23/123 (18%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPP-------------------NGESLEMC 42
YG LQGL+K ET RYG+E WRRSYD PPP G L C
Sbjct: 93 YGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTEC 152
Query: 43 SKQAVA----YFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIP 98
VA YF + I L+ GK V++ AHGNSLR+++ +LD+++ E++ L + TGIP
Sbjct: 153 LADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIP 212
Query: 99 LLY 101
L Y
Sbjct: 213 LRY 215
>pdb|1YFK|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YFK|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|C Chain C, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|D Chain D, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|E Chain E, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|F Chain F, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|G Chain G, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|H Chain H, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|I Chain I, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|J Chain J, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|K Chain K, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|L Chain L, Crystal Structure Of Human B Type Phosphoglycerate Mutase
Length = 262
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 27/127 (21%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPP---------------------------P 34
YG L GLNK ETA ++G+ V WRRSYD+PP P
Sbjct: 92 YGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLP 151
Query: 35 NGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELS 94
+ ESL+ +A+ ++ E I PQ++ GK V++AAHGNSLR I+ +L+ L+ + ++ L L
Sbjct: 152 SCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLP 211
Query: 95 TGIPLLY 101
TGIP++Y
Sbjct: 212 TGIPIVY 218
>pdb|3D8H|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
Cryptosporidium Parvum, Cgd7_4270
pdb|3D8H|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
Cryptosporidium Parvum, Cgd7_4270
Length = 267
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 25/124 (20%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPP-------------------------NG 36
YG LQGLNK ETA ++G++ V WRRS+D+PPP
Sbjct: 109 YGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTT 168
Query: 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
E L+ ++ YF + I P + SGK V+V+AHGNSLR+++ L+ +T ++++ + + T
Sbjct: 169 ECLKDTVERVKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTA 228
Query: 97 IPLL 100
PL+
Sbjct: 229 CPLV 232
>pdb|1QHF|A Chain A, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
pdb|1QHF|B Chain B, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
Length = 240
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 25/125 (20%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPP-------------------------NG 36
YG+LQG +K ET +++G+E + +RRS+D+PPP
Sbjct: 89 YGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPET 148
Query: 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
ESL + + + Y+++ I L SGK VM+AAHGNSLR ++ +L+ ++ ++ L + TG
Sbjct: 149 ESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTG 208
Query: 97 IPLLY 101
IPL++
Sbjct: 209 IPLVF 213
>pdb|4PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|1BQ3|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ4|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|5PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|F Chain F, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|G Chain G, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|H Chain H, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|E Chain E, Saccharomyces Cerevisiae Phosphoglycerate Mutase
Length = 246
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 25/125 (20%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPP-------------------------NG 36
YG+LQG +K ET +++G+E + +RRS+D+PPP
Sbjct: 89 YGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPET 148
Query: 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
ESL + + + Y+++ I L SGK VM+AAHGNSLR ++ +L+ ++ ++ L + TG
Sbjct: 149 ESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTG 208
Query: 97 IPLLY 101
IPL++
Sbjct: 209 IPLVF 213
>pdb|2HHJ|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
pdb|2HHJ|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
Length = 267
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 29/128 (22%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPP--------------------------- 34
YG L GLN+++ A +G+E V WRRSY++ PP
Sbjct: 92 YGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQ 151
Query: 35 --NGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLE 92
ESL+ ++ + Y+ E I P++ GK ++++AHGNS R+++ +L+ ++ +++IN+
Sbjct: 152 LPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINIT 211
Query: 93 LSTGIPLL 100
L TG+P+L
Sbjct: 212 LPTGVPIL 219
>pdb|1T8P|A Chain A, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|1T8P|B Chain B, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|2A9J|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2A9J|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2F90|A Chain A, Crystal Structure Of Bisphosphoglycerate Mutase In Complex
With 3-Phosphoglycerate And Alf4-
pdb|2F90|B Chain B, Crystal Structure Of Bisphosphoglycerate Mutase In Complex
With 3-Phosphoglycerate And Alf4-
pdb|2H4X|A Chain A, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4X|B Chain B, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4Z|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H4Z|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H52|A Chain A, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|2H52|B Chain B, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|3NFY|A Chain A, The Structure Of Human Bisphosphoglycerate Mutase To 1.94a
pdb|3NFY|B Chain B, The Structure Of Human Bisphosphoglycerate Mutase To 1.94a
Length = 267
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 29/128 (22%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPP--------------------------- 34
YG L GLN+++ A +G+E V WRRSY++ PP
Sbjct: 92 YGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQ 151
Query: 35 --NGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLE 92
ESL+ ++ + Y+ E I P++ GK ++++AHGNS R+++ +L+ ++ +++IN+
Sbjct: 152 LPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINIT 211
Query: 93 LSTGIPLL 100
L TG+P+L
Sbjct: 212 LPTGVPIL 219
>pdb|3PGM|A Chain A, The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm
Resolution
pdb|3PGM|B Chain B, The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm
Resolution
Length = 244
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 27/125 (21%)
Query: 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPP-------------------------PNG 36
YG+LQG +K +T +++G+E + +RRS+D+PP P
Sbjct: 89 YGDLQGKDKAQTLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPET 148
Query: 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTG 96
ESL + + + Y+++ I + GK M+AAHGNSLR ++ +L+ ++ ++ L + G
Sbjct: 149 ESLALVIDRLLPYWQDVIAKLV--GKTSMIAAHGNSLRGLVKHLEGISDADIAKLNIPPG 206
Query: 97 IPLLY 101
L++
Sbjct: 207 TILVF 211
>pdb|2OOI|A Chain A, The Crystal Structure Of Gene Product Sa0254 From
Staphylocococcus Aureus Subsp. Aureus N315
pdb|2OOI|B Chain B, The Crystal Structure Of Gene Product Sa0254 From
Staphylocococcus Aureus Subsp. Aureus N315
Length = 162
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 73 LRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEGRFMKRGSPVGPTE 119
I +DKLTS E L+LSTG P L Y + + G P ++
Sbjct: 101 FSDIFFNVDKLTSSEASLLQLSTGEPCLR-YHQTFYTMTGKPFDSSD 146
>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide
pdb|1WAK|A Chain A, X-Ray Structure Of Srpk1
Length = 397
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 25 WRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLT 84
W+RS PPP+G ++ A + +EP+ V +A GN+ + + +
Sbjct: 197 WQRS-GAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQ 255
Query: 85 SQEVINLELSTG 96
+++ +LE+ G
Sbjct: 256 TRQYRSLEVLIG 267
>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its
Substrate AsfSF2
Length = 381
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 25 WRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLT 84
W+RS PPP+G ++ A + +EP+ V +A GN+ + + +
Sbjct: 181 WQRS-GAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQ 239
Query: 85 SQEVINLELSTG 96
+++ +LE+ G
Sbjct: 240 TRQYRSLEVLIG 251
>pdb|2OPW|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 (Apo)
pdb|3OBZ|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 2- Oxoglutarate And Iron Complex
Length = 291
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 68 AHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEGRFMKRGSPVGPTEAGVYAYTE 127
AH +SI T + L++ + +YI+K+ F G V P + + YTE
Sbjct: 109 AHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHF---GGEVSPHQDASFLYTE 165
Query: 128 TLA 130
L
Sbjct: 166 PLG 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,226,235
Number of Sequences: 62578
Number of extensions: 158420
Number of successful extensions: 410
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 30
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)