Query 032238
Match_columns 144
No_of_seqs 188 out of 1219
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01112 phosphoglyceromutase; 99.9 4.5E-24 9.7E-29 159.8 11.5 111 1-111 113-223 (228)
2 PRK14117 gpmA phosphoglyceromu 99.9 1.2E-23 2.6E-28 157.7 11.4 116 1-116 89-229 (230)
3 PRK14118 gpmA phosphoglyceromu 99.9 4.8E-23 1E-27 154.1 11.8 107 1-107 88-219 (227)
4 PRK14119 gpmA phosphoglyceromu 99.9 4.3E-23 9.2E-28 154.4 11.4 107 1-107 89-220 (228)
5 PRK14116 gpmA phosphoglyceromu 99.9 1.1E-22 2.3E-27 152.3 10.8 108 1-108 89-221 (228)
6 PRK14115 gpmA phosphoglyceromu 99.9 5.2E-22 1.1E-26 150.2 12.3 119 1-119 88-231 (247)
7 PRK01295 phosphoglyceromutase; 99.9 3.3E-22 7E-27 147.6 10.8 108 1-109 90-198 (206)
8 TIGR01258 pgm_1 phosphoglycera 99.9 9.5E-22 2.1E-26 148.7 11.9 119 1-119 88-232 (245)
9 PRK14120 gpmA phosphoglyceromu 99.9 8E-22 1.7E-26 149.4 11.1 119 1-119 92-235 (249)
10 PTZ00123 phosphoglycerate muta 99.9 1.1E-21 2.4E-26 147.5 11.5 109 1-109 76-209 (236)
11 PRK13463 phosphatase PhoE; Pro 99.9 9.9E-22 2.2E-26 144.6 10.4 105 1-107 85-190 (203)
12 PRK15004 alpha-ribazole phosph 99.9 2E-21 4.3E-26 142.4 11.1 104 1-107 83-187 (199)
13 COG0588 GpmA Phosphoglycerate 99.9 6.6E-21 1.4E-25 138.8 10.5 110 1-110 89-223 (230)
14 PRK13462 acid phosphatase; Pro 99.8 2.1E-20 4.6E-25 137.7 11.2 99 1-107 87-185 (203)
15 COG0406 phoE Broad specificity 99.8 1.6E-19 3.4E-24 132.9 10.8 104 1-107 87-191 (208)
16 TIGR03848 MSMEG_4193 probable 99.8 2E-19 4.4E-24 132.2 11.2 104 1-107 83-190 (204)
17 TIGR03162 ribazole_cobC alpha- 99.8 2.7E-19 5.8E-24 128.5 9.6 96 1-100 80-176 (177)
18 PRK03482 phosphoglycerate muta 99.8 6.8E-19 1.5E-23 130.4 11.2 103 1-106 84-187 (215)
19 PRK07238 bifunctional RNase H/ 99.8 1.4E-18 3E-23 138.3 11.3 102 1-105 255-356 (372)
20 PTZ00322 6-phosphofructo-2-kin 99.8 5.6E-18 1.2E-22 143.5 12.3 100 1-105 520-626 (664)
21 KOG0235 Phosphoglycerate mutas 99.7 2.2E-16 4.7E-21 116.4 9.3 108 1-108 93-203 (214)
22 PF00300 His_Phos_1: Histidine 99.5 4E-14 8.7E-19 98.8 7.3 75 1-76 84-158 (158)
23 smart00855 PGAM Phosphoglycera 99.5 3.1E-14 6.7E-19 100.1 6.7 72 1-76 84-155 (155)
24 KOG0234 Fructose-6-phosphate 2 99.3 5.2E-12 1.1E-16 101.1 8.7 97 1-102 320-416 (438)
25 PTZ00122 phosphoglycerate muta 99.0 6.5E-10 1.4E-14 86.4 6.9 73 32-105 203-276 (299)
26 cd07067 HP_PGM_like Histidine 98.6 1.2E-07 2.7E-12 66.0 5.9 65 38-106 80-144 (153)
27 cd07040 HP Histidine phosphata 98.3 1.9E-06 4.2E-11 59.5 6.7 63 44-106 82-144 (153)
28 KOG3734 Predicted phosphoglyce 97.7 0.00012 2.5E-09 56.2 6.0 51 33-85 168-218 (272)
29 KOG4609 Predicted phosphoglyce 97.4 0.00064 1.4E-08 50.5 6.6 63 41-104 194-260 (284)
30 PRK06193 hypothetical protein; 96.9 0.0035 7.5E-08 46.5 6.1 45 34-82 132-176 (206)
31 TIGR00249 sixA phosphohistidin 96.3 0.016 3.4E-07 40.7 6.0 58 37-105 83-140 (152)
32 KOG4754 Predicted phosphoglyce 94.1 0.15 3.2E-06 38.1 5.3 72 7-81 127-200 (248)
33 PRK10848 phosphohistidine phos 93.8 0.32 7E-06 34.3 6.6 53 45-104 87-139 (159)
34 PRK15416 lipopolysaccharide co 93.7 0.25 5.4E-06 36.5 5.9 46 37-84 129-174 (201)
35 PF12048 DUF3530: Protein of u 82.0 6.7 0.00015 30.7 6.7 44 40-86 174-217 (310)
36 PF14606 Lipase_GDSL_3: GDSL-l 71.9 4.2 9.1E-05 29.5 2.7 32 37-70 71-102 (178)
37 PF01764 Lipase_3: Lipase (cla 70.8 20 0.00043 23.8 5.8 39 41-81 45-85 (140)
38 COG2062 SixA Phosphohistidine 68.9 18 0.00038 25.9 5.3 42 61-105 101-142 (163)
39 cd04256 AAK_P5CS_ProBA AAK_P5C 65.6 11 0.00024 29.2 4.1 32 39-74 29-60 (284)
40 TIGR00824 EIIA-man PTS system, 65.5 16 0.00034 24.3 4.4 45 31-80 33-80 (116)
41 PF09370 TIM-br_sig_trns: TIM- 64.3 6.7 0.00015 30.3 2.6 37 35-75 190-226 (268)
42 PRK04946 hypothetical protein; 62.2 35 0.00077 24.8 5.9 44 35-82 101-147 (181)
43 TIGR02935 probable nitrogen fi 61.4 22 0.00048 24.8 4.5 48 1-53 17-64 (140)
44 cd07397 MPP_DevT Myxococcus xa 60.5 11 0.00025 28.5 3.3 34 37-75 127-160 (238)
45 COG2390 DeoR Transcriptional r 56.7 59 0.0013 25.8 6.8 54 36-90 90-143 (321)
46 PRK10481 hypothetical protein; 56.5 24 0.00051 26.6 4.3 65 1-71 33-101 (224)
47 TIGR03729 acc_ester putative p 54.1 29 0.00064 25.7 4.6 42 34-77 139-180 (239)
48 PF03610 EIIA-man: PTS system 53.9 37 0.00081 22.2 4.6 47 32-83 33-82 (116)
49 COG1021 EntE Peptide arylation 53.6 40 0.00088 28.1 5.4 59 2-66 22-83 (542)
50 PRK12314 gamma-glutamyl kinase 53.5 17 0.00036 27.9 3.2 29 40-72 30-58 (266)
51 COG1134 TagH ABC-type polysacc 53.2 24 0.00053 27.0 3.9 29 39-71 179-207 (249)
52 cd04261 AAK_AKii-LysC-BS AAK_A 52.7 33 0.00072 25.6 4.7 40 35-78 7-50 (239)
53 cd00519 Lipase_3 Lipase (class 52.0 47 0.001 24.3 5.3 43 37-81 105-149 (229)
54 COG1121 ZnuC ABC-type Mn/Zn tr 51.9 12 0.00026 28.7 2.1 12 59-70 187-198 (254)
55 PF01488 Shikimate_DH: Shikima 51.7 29 0.00063 23.4 3.9 29 60-88 11-39 (135)
56 PLN02517 phosphatidylcholine-s 51.6 29 0.00062 30.1 4.5 41 28-70 179-221 (642)
57 PF13422 DUF4110: Domain of un 50.6 33 0.00071 22.3 3.8 24 32-55 11-34 (96)
58 cd00741 Lipase Lipase. Lipase 50.4 51 0.0011 22.4 5.1 40 40-81 8-49 (153)
59 PF02450 LCAT: Lecithin:choles 50.1 24 0.00052 28.5 3.8 49 28-80 89-140 (389)
60 cd04246 AAK_AK-DapG-like AAK_A 49.9 46 0.001 24.8 5.1 40 35-78 7-50 (239)
61 PF07302 AroM: AroM protein; 48.9 31 0.00067 25.9 3.9 64 1-71 31-98 (221)
62 PF13479 AAA_24: AAA domain 48.3 38 0.00083 24.7 4.3 37 36-75 105-141 (213)
63 COG1136 SalX ABC-type antimicr 48.1 31 0.00067 26.0 3.8 33 41-76 176-208 (226)
64 COG1416 Uncharacterized conser 48.0 61 0.0013 21.7 4.8 34 45-80 18-51 (112)
65 COG0693 ThiJ Putative intracel 46.9 38 0.00083 23.9 4.1 51 31-85 70-124 (188)
66 PRK13695 putative NTPase; Prov 45.6 1E+02 0.0022 21.4 6.2 41 40-84 109-149 (174)
67 PF04117 Mpv17_PMP22: Mpv17 / 44.0 36 0.00077 20.1 3.0 20 2-21 1-20 (68)
68 PF00317 Ribonuc_red_lgN: Ribo 43.5 28 0.0006 21.6 2.6 27 27-53 13-42 (83)
69 smart00195 DSPc Dual specifici 43.1 64 0.0014 21.4 4.6 36 36-75 57-92 (138)
70 cd03255 ABC_MJ0796_Lo1CDE_FtsE 42.4 43 0.00093 24.2 3.8 27 43-72 176-202 (218)
71 KOG2728 Uncharacterized conser 42.2 27 0.00059 26.9 2.7 36 36-74 8-43 (302)
72 cd03293 ABC_NrtD_SsuB_transpor 41.8 44 0.00095 24.2 3.8 27 43-72 167-193 (220)
73 COG0381 WecB UDP-N-acetylgluco 41.2 1E+02 0.0022 25.2 5.9 42 35-80 69-110 (383)
74 TIGR01092 P5CS delta l-pyrroli 40.9 42 0.00091 29.6 4.0 31 39-73 27-57 (715)
75 COG1116 TauB ABC-type nitrate/ 40.5 44 0.00095 25.6 3.6 30 44-76 167-196 (248)
76 cd03267 ABC_NatA_like Similar 40.2 52 0.0011 24.3 4.0 27 43-72 189-215 (236)
77 cd03261 ABC_Org_Solvent_Resist 39.9 47 0.001 24.4 3.8 26 43-71 172-197 (235)
78 PRK09191 two-component respons 39.8 1.2E+02 0.0026 22.2 6.0 43 36-81 115-157 (261)
79 COG2893 ManX Phosphotransferas 39.6 34 0.00074 23.8 2.7 18 63-80 3-20 (143)
80 TIGR01166 cbiO cobalt transpor 39.6 23 0.0005 25.1 1.9 25 42-70 162-186 (190)
81 cd03296 ABC_CysA_sulfate_impor 39.5 49 0.0011 24.4 3.8 26 43-71 172-197 (239)
82 cd03259 ABC_Carb_Solutes_like 39.5 50 0.0011 23.8 3.8 27 42-71 165-191 (213)
83 PF12500 TRSP: TRSP domain C t 39.4 1.2E+02 0.0026 21.5 5.5 20 59-78 55-74 (155)
84 cd03222 ABC_RNaseL_inhibitor T 39.4 60 0.0013 23.2 4.1 28 41-71 105-132 (177)
85 cd03229 ABC_Class3 This class 39.3 55 0.0012 23.0 3.9 27 42-71 135-161 (178)
86 PLN02162 triacylglycerol lipas 39.2 83 0.0018 26.5 5.3 34 44-79 262-297 (475)
87 PF04101 Glyco_tran_28_C: Glyc 39.0 22 0.00048 24.6 1.7 20 65-84 75-94 (167)
88 cd03238 ABC_UvrA The excision 38.9 26 0.00057 25.0 2.2 27 42-72 124-150 (176)
89 cd03237 ABC_RNaseL_inhibitor_d 38.7 52 0.0011 24.7 3.8 27 43-72 151-177 (246)
90 TIGR02315 ABC_phnC phosphonate 38.4 51 0.0011 24.3 3.7 26 43-71 181-206 (243)
91 PF02697 DUF217: Uncharacteriz 38.1 31 0.00066 21.1 2.0 14 35-48 20-33 (71)
92 PLN00413 triacylglycerol lipas 37.9 1.1E+02 0.0024 25.8 5.8 34 44-79 268-303 (479)
93 cd03258 ABC_MetN_methionine_tr 37.6 53 0.0012 24.0 3.7 25 44-71 177-201 (233)
94 PLN02324 triacylglycerol lipas 37.6 90 0.002 25.8 5.2 37 41-79 194-234 (415)
95 TIGR02769 nickel_nikE nickel i 36.8 56 0.0012 24.6 3.8 27 43-72 186-212 (265)
96 cd03256 ABC_PhnC_transporter A 36.8 58 0.0013 23.9 3.8 12 60-71 194-205 (241)
97 PLN02408 phospholipase A1 36.7 1E+02 0.0022 25.0 5.3 39 41-81 179-221 (365)
98 cd03246 ABCC_Protease_Secretio 36.6 31 0.00067 24.1 2.2 12 60-71 145-156 (173)
99 PRK14484 phosphotransferase ma 36.4 42 0.00092 22.8 2.7 18 63-80 3-21 (124)
100 PF07819 PGAP1: PGAP1-like pro 36.3 85 0.0018 23.3 4.6 44 34-77 54-103 (225)
101 cd00006 PTS_IIA_man PTS_IIA, P 36.3 96 0.0021 20.4 4.5 42 32-78 33-76 (122)
102 TIGR02211 LolD_lipo_ex lipopro 36.3 61 0.0013 23.4 3.8 12 60-71 191-202 (221)
103 cd03257 ABC_NikE_OppD_transpor 36.2 58 0.0013 23.6 3.7 26 43-71 181-206 (228)
104 PRK11831 putative ABC transpor 36.1 58 0.0013 24.6 3.8 26 43-71 179-204 (269)
105 PF01965 DJ-1_PfpI: DJ-1/PfpI 36.1 38 0.00082 23.0 2.5 46 31-80 41-90 (147)
106 PRK13646 cbiO cobalt transport 36.0 60 0.0013 24.8 3.9 25 45-72 183-207 (286)
107 cd03297 ABC_ModC_molybdenum_tr 36.0 61 0.0013 23.4 3.8 27 43-72 167-193 (214)
108 cd03301 ABC_MalK_N The N-termi 35.9 62 0.0013 23.2 3.8 12 60-71 180-191 (213)
109 PF00782 DSPc: Dual specificit 35.8 32 0.0007 22.6 2.1 37 35-75 51-87 (133)
110 PTZ00489 glutamate 5-kinase; P 35.8 69 0.0015 24.6 4.1 32 38-74 26-57 (264)
111 cd03295 ABC_OpuCA_Osmoprotecti 35.6 60 0.0013 23.9 3.7 28 41-71 169-196 (242)
112 cd03230 ABC_DR_subfamily_A Thi 35.6 64 0.0014 22.5 3.7 26 42-71 130-155 (173)
113 TIGR02673 FtsE cell division A 35.5 28 0.00061 25.1 1.9 12 60-71 186-197 (214)
114 PRK11248 tauB taurine transpor 35.4 61 0.0013 24.3 3.8 27 42-71 163-189 (255)
115 PRK13540 cytochrome c biogenes 35.3 30 0.00066 24.8 2.0 12 60-71 176-187 (200)
116 cd03225 ABC_cobalt_CbiO_domain 35.1 68 0.0015 23.0 3.9 24 44-71 171-194 (211)
117 TIGR01184 ntrCD nitrate transp 35.1 65 0.0014 23.6 3.9 12 60-71 164-175 (230)
118 PRK10584 putative ABC transpor 34.9 67 0.0014 23.4 3.9 27 43-72 182-208 (228)
119 PF05057 DUF676: Putative seri 34.9 1.1E+02 0.0025 22.3 5.1 45 37-82 53-101 (217)
120 PRK10771 thiQ thiamine transpo 34.7 66 0.0014 23.5 3.8 26 44-72 166-191 (232)
121 PRK14250 phosphate ABC transpo 34.6 68 0.0015 23.7 3.9 26 43-71 167-192 (241)
122 PRK11629 lolD lipoprotein tran 34.5 68 0.0015 23.5 3.9 12 60-71 195-206 (233)
123 COG1647 Esterase/lipase [Gener 34.5 1.2E+02 0.0025 23.2 5.0 43 38-81 64-106 (243)
124 PRK09177 xanthine-guanine phos 34.3 1.5E+02 0.0032 20.7 5.4 46 38-85 11-57 (156)
125 COG5502 Uncharacterized conser 34.1 1.3E+02 0.0027 20.9 4.7 40 12-51 50-90 (135)
126 PRK11780 isoprenoid biosynthes 34.1 36 0.00079 25.3 2.3 27 44-74 115-141 (217)
127 TIGR02323 CP_lyasePhnK phospho 34.0 67 0.0014 23.8 3.8 26 43-71 184-209 (253)
128 cd03265 ABC_DrrA DrrA is the A 33.9 72 0.0016 23.1 3.9 25 44-71 168-192 (220)
129 TIGR00960 3a0501s02 Type II (G 33.9 30 0.00065 25.0 1.8 12 60-71 187-198 (216)
130 COG1122 CbiO ABC-type cobalt t 33.5 61 0.0013 24.4 3.5 25 44-71 175-199 (235)
131 PRK09984 phosphonate/organopho 33.5 69 0.0015 24.0 3.8 13 60-72 202-214 (262)
132 PRK10247 putative ABC transpor 33.4 72 0.0016 23.3 3.8 26 43-71 173-198 (225)
133 KOG3724 Negative regulator of 33.3 66 0.0014 29.0 4.0 48 29-77 142-200 (973)
134 PLN02847 triacylglycerol lipas 33.1 1.1E+02 0.0025 26.6 5.3 43 38-82 229-273 (633)
135 KOG1486 GTP-binding protein DR 32.8 22 0.00047 27.8 0.9 16 128-143 33-48 (364)
136 PF06180 CbiK: Cobalt chelatas 32.8 33 0.00071 26.4 1.9 37 35-72 116-152 (262)
137 TIGR02364 dha_pts dihydroxyace 32.6 52 0.0011 22.3 2.7 18 63-80 2-20 (125)
138 PRK10575 iron-hydroxamate tran 32.4 75 0.0016 23.9 3.9 24 45-71 185-208 (265)
139 cd03226 ABC_cobalt_CbiO_domain 32.3 33 0.00073 24.6 1.9 25 43-71 162-186 (205)
140 TIGR01277 thiQ thiamine ABC tr 32.3 79 0.0017 22.8 3.8 13 60-72 178-190 (213)
141 PF06821 Ser_hydrolase: Serine 32.2 1.1E+02 0.0023 21.7 4.5 20 61-80 54-73 (171)
142 cd03292 ABC_FtsE_transporter F 32.2 32 0.0007 24.7 1.8 25 43-71 172-196 (214)
143 PRK13547 hmuV hemin importer A 32.1 74 0.0016 24.2 3.8 25 44-71 191-215 (272)
144 TIGR02689 ars_reduc_gluta arse 32.1 48 0.001 22.1 2.5 18 62-79 1-18 (126)
145 PRK10418 nikD nickel transport 32.0 76 0.0016 23.7 3.8 24 44-70 177-200 (254)
146 cd03216 ABC_Carb_Monos_I This 32.0 33 0.00073 23.8 1.8 28 41-72 116-143 (163)
147 PRK13650 cbiO cobalt transport 31.9 78 0.0017 24.1 3.9 27 43-72 176-202 (279)
148 cd03300 ABC_PotA_N PotA is an 31.7 79 0.0017 23.2 3.8 13 60-72 180-192 (232)
149 PRK15112 antimicrobial peptide 31.7 73 0.0016 24.0 3.7 26 43-71 185-210 (267)
150 PF01715 IPPT: IPP transferase 31.7 1.3E+02 0.0028 22.8 5.0 49 30-84 28-77 (253)
151 PRK13541 cytochrome c biogenes 31.6 40 0.00086 24.0 2.1 11 60-70 172-182 (195)
152 cd03231 ABC_CcmA_heme_exporter 31.6 32 0.0007 24.7 1.7 24 43-70 161-184 (201)
153 PRK13637 cbiO cobalt transport 31.6 78 0.0017 24.2 3.9 27 42-71 179-205 (287)
154 cd03232 ABC_PDR_domain2 The pl 31.5 34 0.00073 24.4 1.7 27 41-71 142-168 (192)
155 TIGR02770 nickel_nikD nickel i 31.5 80 0.0017 23.1 3.8 12 60-71 175-186 (230)
156 TIGR01187 potA spermidine/putr 31.4 74 0.0016 24.9 3.8 27 43-72 136-162 (325)
157 PRK11391 etp phosphotyrosine-p 31.4 48 0.001 22.8 2.4 18 62-79 3-20 (144)
158 COG0444 DppD ABC-type dipeptid 31.2 69 0.0015 25.4 3.5 28 42-72 188-215 (316)
159 PRK15093 antimicrobial peptide 31.2 77 0.0017 24.9 3.8 26 43-71 194-219 (330)
160 cd03298 ABC_ThiQ_thiamine_tran 31.2 83 0.0018 22.6 3.8 12 60-71 178-189 (211)
161 PRK11247 ssuB aliphatic sulfon 31.0 79 0.0017 23.8 3.8 26 44-72 170-195 (257)
162 cd03235 ABC_Metallic_Cations A 31.0 39 0.00085 24.3 2.0 25 43-71 168-192 (213)
163 PRK13538 cytochrome c biogenes 30.9 36 0.00078 24.5 1.8 11 60-70 178-188 (204)
164 TIGR01189 ccmA heme ABC export 30.7 37 0.0008 24.2 1.9 24 43-70 163-186 (198)
165 TIGR02982 heterocyst_DevA ABC 30.7 83 0.0018 22.8 3.8 26 43-71 177-202 (220)
166 TIGR03864 PQQ_ABC_ATP ABC tran 30.4 86 0.0019 23.0 3.8 12 60-71 182-193 (236)
167 PF02604 PhdYeFM_antitox: Anti 30.3 86 0.0019 18.5 3.2 30 38-71 5-34 (75)
168 PRK10419 nikE nickel transport 30.2 83 0.0018 23.8 3.8 26 43-71 187-212 (268)
169 TIGR01809 Shik-DH-AROM shikima 30.1 89 0.0019 24.0 4.0 27 60-86 124-150 (282)
170 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 30.0 92 0.002 22.8 3.9 25 43-71 178-202 (224)
171 PF10615 DUF2470: Protein of u 29.8 1.4E+02 0.003 18.3 5.1 62 69-140 21-83 (83)
172 cd04260 AAK_AKi-DapG-BS AAK_AK 29.7 84 0.0018 23.5 3.7 31 35-69 7-39 (244)
173 TIGR03005 ectoine_ehuA ectoine 29.7 89 0.0019 23.2 3.8 26 43-71 182-207 (252)
174 PRK13543 cytochrome c biogenes 29.7 42 0.00091 24.4 2.0 24 44-71 174-197 (214)
175 PRK10253 iron-enterobactin tra 29.6 92 0.002 23.4 3.9 27 43-72 179-205 (265)
176 cd03219 ABC_Mj1267_LivG_branch 29.5 40 0.00086 24.7 1.9 12 60-71 192-203 (236)
177 PRK11432 fbpC ferric transport 29.4 79 0.0017 25.2 3.7 28 43-73 172-199 (351)
178 PRK13633 cobalt transporter AT 29.4 88 0.0019 23.8 3.8 26 45-73 182-207 (280)
179 PRK11701 phnK phosphonate C-P 29.3 89 0.0019 23.3 3.8 27 43-72 187-213 (258)
180 cd03214 ABC_Iron-Siderophores_ 29.2 97 0.0021 21.7 3.8 29 41-72 131-159 (180)
181 PLN02934 triacylglycerol lipas 29.2 1.5E+02 0.0033 25.2 5.3 38 40-79 301-340 (515)
182 cd03294 ABC_Pro_Gly_Bertaine T 29.1 91 0.002 23.6 3.8 12 60-71 210-221 (269)
183 TIGR03608 L_ocin_972_ABC putat 29.0 1E+02 0.0022 21.9 3.9 26 43-72 170-195 (206)
184 TIGR03568 NeuC_NnaA UDP-N-acet 28.8 1.9E+02 0.0041 23.0 5.8 46 35-84 70-119 (365)
185 PRK13636 cbiO cobalt transport 28.8 92 0.002 23.7 3.8 27 44-73 178-204 (283)
186 PRK13645 cbiO cobalt transport 28.6 91 0.002 23.8 3.8 25 44-71 187-211 (289)
187 PRK13640 cbiO cobalt transport 28.5 96 0.0021 23.6 3.9 13 60-72 193-205 (282)
188 TIGR03410 urea_trans_UrtE urea 28.4 1E+02 0.0023 22.4 4.0 25 44-71 168-192 (230)
189 cd03169 GATase1_PfpI_1 Type 1 28.4 95 0.0021 21.8 3.6 48 33-84 82-131 (180)
190 PRK13548 hmuV hemin importer A 28.3 96 0.0021 23.2 3.8 24 45-71 178-201 (258)
191 PF03681 UPF0150: Uncharacteri 28.3 67 0.0015 17.4 2.3 21 35-55 27-47 (48)
192 PRK13634 cbiO cobalt transport 28.3 95 0.0021 23.8 3.9 13 60-72 195-207 (290)
193 PRK09473 oppD oligopeptide tra 28.3 90 0.002 24.6 3.8 26 44-72 198-223 (330)
194 PRK10126 tyrosine phosphatase; 28.2 62 0.0014 22.2 2.6 18 62-79 3-20 (147)
195 cd03213 ABCG_EPDR ABCG transpo 28.1 42 0.00092 24.0 1.8 26 42-71 146-171 (194)
196 TIGR03265 PhnT2 putative 2-ami 28.0 90 0.0019 24.9 3.7 28 43-73 170-197 (353)
197 TIGR00968 3a0106s01 sulfate AB 27.9 1E+02 0.0022 22.7 3.9 11 61-71 181-191 (237)
198 PRK13648 cbiO cobalt transport 27.8 1E+02 0.0022 23.2 3.9 12 60-71 192-203 (269)
199 PRK15056 manganese/iron transp 27.8 45 0.00097 25.3 1.9 12 60-71 191-202 (272)
200 PRK13539 cytochrome c biogenes 27.8 46 0.00099 24.0 1.9 24 44-71 164-187 (207)
201 cd03266 ABC_NatA_sodium_export 27.7 44 0.00094 24.2 1.8 25 43-71 172-196 (218)
202 PRK09452 potA putrescine/sperm 27.6 96 0.0021 25.0 3.9 29 42-73 179-207 (375)
203 PRK11614 livF leucine/isoleuci 27.6 47 0.001 24.4 2.0 25 42-70 172-196 (237)
204 PF05060 MGAT2: N-acetylglucos 27.5 1.6E+02 0.0035 23.8 5.1 53 38-94 41-93 (356)
205 PRK15079 oligopeptide ABC tran 27.5 94 0.002 24.5 3.8 26 45-73 199-224 (331)
206 PRK11308 dppF dipeptide transp 27.4 94 0.002 24.5 3.7 26 45-73 192-217 (327)
207 PRK10619 histidine/lysine/argi 27.4 45 0.00098 24.9 1.9 12 60-71 201-212 (257)
208 COG1119 ModF ABC-type molybden 27.3 97 0.0021 23.9 3.6 24 45-70 209-232 (257)
209 TIGR01978 sufC FeS assembly AT 27.2 50 0.0011 24.2 2.1 12 60-71 193-204 (243)
210 COG1930 CbiN ABC-type cobalt t 27.1 31 0.00066 22.3 0.8 33 2-37 31-63 (97)
211 PRK13696 hypothetical protein; 27.1 61 0.0013 19.3 2.0 14 34-47 20-33 (62)
212 cd00267 ABC_ATPase ABC (ATP-bi 27.1 47 0.001 22.7 1.8 28 41-72 114-141 (157)
213 TIGR03269 met_CoM_red_A2 methy 26.9 92 0.002 26.0 3.8 13 60-72 218-230 (520)
214 cd03247 ABCC_cytochrome_bd The 26.9 58 0.0013 22.8 2.3 12 61-72 147-158 (178)
215 PRK09493 glnQ glutamine ABC tr 26.8 47 0.001 24.5 1.9 25 43-71 172-196 (240)
216 KOG1154 Gamma-glutamyl kinase 26.8 93 0.002 24.0 3.4 33 41-74 29-61 (285)
217 PF11569 Homez: Homeodomain le 26.8 28 0.0006 20.3 0.5 20 124-143 16-35 (56)
218 COG0263 ProB Glutamate 5-kinas 26.6 1.1E+02 0.0024 24.8 4.0 39 34-76 21-59 (369)
219 PRK00865 glutamate racemase; P 26.6 1.5E+02 0.0031 22.5 4.5 57 11-71 22-78 (261)
220 COG3551 Uncharacterized protei 26.5 36 0.00079 27.1 1.2 29 116-144 178-206 (402)
221 PRK13652 cbiO cobalt transport 26.5 1.1E+02 0.0024 23.2 3.9 26 43-71 173-198 (277)
222 TIGR02324 CP_lyasePhnL phospho 26.5 52 0.0011 23.9 2.0 26 43-72 185-210 (224)
223 PLN02454 triacylglycerol lipas 26.5 1.8E+02 0.004 24.0 5.3 37 41-79 207-247 (414)
224 PRK13635 cbiO cobalt transport 26.5 1.1E+02 0.0025 23.2 4.0 13 60-72 190-202 (279)
225 cd03269 ABC_putative_ATPase Th 26.3 43 0.00092 24.1 1.5 26 43-72 164-189 (210)
226 PRK04155 chaperone protein Hch 26.3 84 0.0018 24.5 3.2 41 31-75 151-194 (287)
227 cd03279 ABC_sbcCD SbcCD and ot 26.3 55 0.0012 23.8 2.1 23 45-71 171-193 (213)
228 cd03268 ABC_BcrA_bacitracin_re 26.2 45 0.00098 23.9 1.7 26 43-72 162-187 (208)
229 PRK11144 modC molybdate transp 26.2 1E+02 0.0022 24.5 3.8 27 43-72 164-190 (352)
230 TIGR01186 proV glycine betaine 26.1 1.1E+02 0.0024 24.6 3.9 27 43-72 165-191 (363)
231 PRK14258 phosphate ABC transpo 26.0 1.2E+02 0.0025 22.8 3.9 12 60-71 200-211 (261)
232 TIGR02142 modC_ABC molybdenum 26.0 1.1E+02 0.0023 24.4 3.9 26 44-72 168-193 (354)
233 PRK11022 dppD dipeptide transp 26.0 1.1E+02 0.0023 24.1 3.8 13 60-72 203-215 (326)
234 PRK10070 glycine betaine trans 26.0 1E+02 0.0023 25.1 3.8 12 60-71 214-225 (400)
235 PRK11124 artP arginine transpo 25.9 48 0.001 24.5 1.8 26 43-72 177-202 (242)
236 PRK11000 maltose/maltodextrin 25.8 1E+02 0.0022 24.7 3.7 27 43-72 169-195 (369)
237 COG1582 FlgEa Uncharacterized 25.7 90 0.0019 18.8 2.5 19 37-55 42-60 (67)
238 cd03224 ABC_TM1139_LivF_branch 25.6 54 0.0012 23.7 2.0 12 60-71 181-192 (222)
239 cd03218 ABC_YhbG The ABC trans 25.6 51 0.0011 24.0 1.9 25 43-71 169-193 (232)
240 PRK10851 sulfate/thiosulfate t 25.6 1.1E+02 0.0024 24.4 3.9 29 42-73 171-199 (353)
241 PRK11650 ugpC glycerol-3-phosp 25.3 1.1E+02 0.0024 24.4 3.8 26 44-72 171-196 (356)
242 cd03369 ABCC_NFT1 Domain 2 of 25.3 60 0.0013 23.3 2.2 12 61-72 174-185 (207)
243 PRK11153 metN DL-methionine tr 25.2 1.1E+02 0.0025 24.1 3.9 27 43-72 176-202 (343)
244 cd03262 ABC_HisP_GlnQ_permease 25.2 1.3E+02 0.0028 21.5 3.9 26 42-71 170-195 (213)
245 COG1118 CysA ABC-type sulfate/ 25.2 1.1E+02 0.0024 24.5 3.7 30 40-72 170-199 (345)
246 cd03133 GATase1_ES1 Type 1 glu 25.2 82 0.0018 23.4 2.9 25 45-73 113-137 (213)
247 CHL00131 ycf16 sulfate ABC tra 25.2 55 0.0012 24.2 2.0 13 60-72 200-212 (252)
248 cd03299 ABC_ModC_like Archeal 25.2 1.2E+02 0.0027 22.2 3.9 11 61-71 180-190 (235)
249 cd03148 GATase1_EcHsp31_like T 25.2 1.1E+02 0.0024 22.9 3.6 38 32-73 101-141 (232)
250 COG1598 Predicted nuclease of 25.1 1E+02 0.0023 18.6 2.9 22 34-55 28-49 (73)
251 PRK10895 lipopolysaccharide AB 25.1 55 0.0012 24.1 2.0 11 60-70 186-196 (241)
252 COG4118 Phd Antitoxin of toxin 25.1 1.7E+02 0.0037 18.4 3.9 35 38-77 6-40 (84)
253 cd03228 ABCC_MRP_Like The MRP 25.0 59 0.0013 22.6 2.0 24 43-71 132-155 (171)
254 cd03135 GATase1_DJ-1 Type 1 gl 24.9 1.3E+02 0.0027 20.4 3.7 48 32-83 65-115 (163)
255 PRK14249 phosphate ABC transpo 24.9 54 0.0012 24.4 1.9 11 61-71 196-206 (251)
256 TIGR03771 anch_rpt_ABC anchore 24.8 61 0.0013 23.7 2.1 12 60-71 162-173 (223)
257 PRK13402 gamma-glutamyl kinase 24.7 1E+02 0.0022 25.0 3.5 31 40-74 26-56 (368)
258 PRK13649 cbiO cobalt transport 24.6 58 0.0013 24.7 2.1 12 60-71 194-205 (280)
259 cd03215 ABC_Carb_Monos_II This 24.5 54 0.0012 23.1 1.7 25 43-71 140-164 (182)
260 PRK09580 sufC cysteine desulfu 24.5 56 0.0012 24.1 1.9 13 60-72 194-206 (248)
261 PRK09544 znuC high-affinity zi 24.4 1.3E+02 0.0027 22.6 3.9 27 43-72 156-182 (251)
262 TIGR01618 phage_P_loop phage n 24.4 1.6E+02 0.0035 21.9 4.3 31 37-71 113-143 (220)
263 cd03147 GATase1_Ydr533c_like T 24.4 67 0.0014 24.1 2.3 41 31-75 98-141 (231)
264 COG0549 ArcC Carbamate kinase 24.4 88 0.0019 24.7 2.9 31 36-71 21-51 (312)
265 PRK06635 aspartate kinase; Rev 24.3 99 0.0021 24.9 3.4 40 35-78 9-52 (404)
266 PRK03695 vitamin B12-transport 24.1 65 0.0014 24.0 2.2 26 43-72 169-194 (248)
267 PRK08293 3-hydroxybutyryl-CoA 24.1 2.1E+02 0.0045 21.8 5.1 41 34-81 157-200 (287)
268 PRK15088 PTS system mannose-sp 24.1 84 0.0018 24.9 2.9 18 63-80 4-21 (322)
269 TIGR01552 phd_fam prevent-host 24.0 1.4E+02 0.0029 16.3 3.8 30 38-72 3-32 (52)
270 COG3530 Uncharacterized protei 24.0 28 0.00061 20.9 0.2 29 2-37 16-44 (71)
271 KOG2369 Lecithin:cholesterol a 23.9 1.3E+02 0.0028 25.3 4.0 34 35-70 157-190 (473)
272 COG1010 CobJ Precorrin-3B meth 23.9 1.1E+02 0.0023 23.5 3.2 31 38-73 54-84 (249)
273 cd03240 ABC_Rad50 The catalyti 23.8 2.1E+02 0.0046 20.6 4.8 24 45-71 160-183 (204)
274 COG4107 PhnK ABC-type phosphon 23.8 2.4E+02 0.0052 21.0 4.9 42 34-78 178-219 (258)
275 PRK11300 livG leucine/isoleuci 23.7 1.4E+02 0.003 22.1 4.0 11 61-71 204-214 (255)
276 PRK10908 cell division protein 23.6 58 0.0013 23.6 1.8 24 43-70 173-196 (222)
277 COG4987 CydC ABC-type transpor 23.5 2.1E+02 0.0046 24.7 5.2 49 22-72 464-534 (573)
278 PRK11231 fecE iron-dicitrate t 23.4 65 0.0014 24.0 2.1 25 43-71 174-198 (255)
279 PRK13632 cbiO cobalt transport 23.4 1.4E+02 0.003 22.5 3.9 26 43-71 178-203 (271)
280 TIGR03740 galliderm_ABC gallid 23.3 56 0.0012 23.7 1.7 25 43-71 160-184 (223)
281 cd03138 GATase1_AraC_2 AraC tr 23.2 96 0.0021 21.9 2.9 36 43-82 90-125 (195)
282 PRK14027 quinate/shikimate deh 23.2 2.1E+02 0.0045 22.1 4.9 25 60-84 126-150 (283)
283 PRK14245 phosphate ABC transpo 23.2 61 0.0013 24.0 1.9 12 61-72 195-206 (250)
284 PF00328 His_Phos_2: Histidine 23.1 3.4E+02 0.0073 20.5 6.3 24 61-85 289-312 (347)
285 TIGR03873 F420-0_ABC_ATP propo 22.9 67 0.0015 23.9 2.1 25 43-71 173-197 (256)
286 PF06289 FlbD: Flagellar prote 22.9 1.1E+02 0.0023 18.1 2.5 17 37-53 42-58 (60)
287 PF01451 LMWPc: Low molecular 22.8 43 0.00094 22.4 0.9 16 64-79 1-16 (138)
288 TIGR01188 drrA daunorubicin re 22.7 1.3E+02 0.0029 23.1 3.7 25 43-71 160-184 (302)
289 PRK13530 arsenate reductase; P 22.7 83 0.0018 21.3 2.3 18 62-79 4-21 (133)
290 PRK14269 phosphate ABC transpo 22.6 1.5E+02 0.0032 21.9 3.9 11 61-71 191-201 (246)
291 PRK13642 cbiO cobalt transport 22.6 1.4E+02 0.0031 22.6 3.9 14 60-73 190-203 (277)
292 cd03289 ABCC_CFTR2 The CFTR su 22.5 81 0.0018 24.2 2.5 12 60-71 186-197 (275)
293 cd03270 ABC_UvrA_I The excisio 22.5 65 0.0014 23.7 1.9 26 43-72 175-200 (226)
294 cd03264 ABC_drug_resistance_li 22.4 62 0.0013 23.3 1.7 12 61-72 179-190 (211)
295 PF14417 MEDS: MEDS: MEthanoge 22.4 3E+02 0.0064 19.6 8.5 41 37-81 27-68 (191)
296 PF00201 UDPGT: UDP-glucoronos 22.2 1.1E+02 0.0024 25.1 3.4 24 61-84 340-363 (500)
297 PF12993 DUF3877: Domain of un 22.1 1.2E+02 0.0026 21.9 3.1 40 65-105 103-143 (175)
298 PRK14242 phosphate transporter 22.0 71 0.0015 23.7 2.0 11 61-71 198-208 (253)
299 cd03245 ABCC_bacteriocin_expor 21.9 81 0.0018 22.7 2.3 11 62-72 190-200 (220)
300 PRK13638 cbiO cobalt transport 21.9 71 0.0015 24.1 2.1 25 44-72 173-197 (271)
301 PRK14240 phosphate transporter 21.8 72 0.0016 23.6 2.1 11 61-71 195-205 (250)
302 PRK11264 putative amino-acid A 21.8 69 0.0015 23.7 2.0 12 60-71 193-204 (250)
303 TIGR03415 ABC_choXWV_ATP choli 21.8 1.5E+02 0.0032 24.1 3.9 13 60-72 214-226 (382)
304 PRK14268 phosphate ABC transpo 21.7 66 0.0014 24.1 1.8 11 61-71 203-213 (258)
305 PF02553 CbiN: Cobalt transpor 21.6 29 0.00063 21.5 -0.1 27 8-37 37-63 (74)
306 COG3840 ThiQ ABC-type thiamine 21.6 1.6E+02 0.0035 22.0 3.7 12 60-71 179-190 (231)
307 cd05191 NAD_bind_amino_acid_DH 21.5 2E+02 0.0044 17.4 3.8 24 60-83 22-45 (86)
308 cd03252 ABCC_Hemolysin The ABC 21.5 73 0.0016 23.3 2.0 13 60-72 186-198 (237)
309 PF04422 FrhB_FdhB_N: Coenzyme 21.5 71 0.0015 19.7 1.6 19 65-83 15-33 (82)
310 PRK13643 cbiO cobalt transport 21.5 1.6E+02 0.0034 22.5 3.9 12 60-71 193-204 (288)
311 COG5564 Predicted TIM-barrel e 21.5 91 0.002 23.7 2.4 36 36-75 197-232 (276)
312 PRK14262 phosphate ABC transpo 21.4 77 0.0017 23.5 2.1 11 61-71 195-205 (250)
313 COG0169 AroE Shikimate 5-dehyd 21.4 1.6E+02 0.0036 22.9 4.0 26 61-86 126-151 (283)
314 COG1125 OpuBA ABC-type proline 21.4 1.2E+02 0.0026 23.9 3.1 25 43-70 171-195 (309)
315 PF06971 Put_DNA-bind_N: Putat 21.3 1E+02 0.0022 17.4 2.1 18 124-141 6-23 (50)
316 cd03409 Chelatase_Class_II Cla 21.2 53 0.0012 20.4 1.1 10 64-73 2-11 (101)
317 PRK13647 cbiO cobalt transport 21.2 1.7E+02 0.0036 22.2 4.0 11 61-71 188-198 (274)
318 PF01359 Transposase_1: Transp 21.2 78 0.0017 19.7 1.8 17 126-142 53-69 (81)
319 TIGR03269 met_CoM_red_A2 methy 21.1 1.4E+02 0.0029 25.0 3.7 13 60-72 477-489 (520)
320 cd03253 ABCC_ATM1_transporter 21.1 75 0.0016 23.2 2.0 12 61-72 186-197 (236)
321 cd04242 AAK_G5K_ProB AAK_G5K_P 21.0 1.3E+02 0.0028 22.6 3.3 28 40-71 20-47 (251)
322 COG4586 ABC-type uncharacteriz 21.0 1.3E+02 0.0029 23.8 3.3 27 41-70 190-216 (325)
323 cd03254 ABCC_Glucan_exporter_l 20.9 80 0.0017 22.9 2.1 12 61-72 188-199 (229)
324 TIGR03258 PhnT 2-aminoethylpho 20.9 1.5E+02 0.0033 23.7 3.8 29 42-73 172-201 (362)
325 cd03217 ABC_FeS_Assembly ABC-t 20.8 1.9E+02 0.004 20.7 4.0 27 41-71 138-164 (200)
326 PRK15088 PTS system mannose-sp 20.7 1.9E+02 0.0042 22.9 4.3 43 31-78 34-79 (322)
327 PRK11607 potG putrescine trans 20.7 1.5E+02 0.0032 24.0 3.7 28 43-73 185-212 (377)
328 PRK13631 cbiO cobalt transport 20.3 74 0.0016 25.0 1.9 13 60-72 225-237 (320)
329 TIGR01165 cbiN cobalt transpor 20.3 34 0.00073 22.0 -0.0 29 6-37 37-65 (91)
330 COG1131 CcmA ABC-type multidru 20.3 1.6E+02 0.0035 22.7 3.8 26 42-70 171-196 (293)
331 PRK13651 cobalt transporter AT 20.3 71 0.0015 24.8 1.8 25 43-71 201-225 (305)
332 PRK11174 cysteine/glutathione 20.2 1.6E+02 0.0034 25.0 3.9 12 60-71 533-544 (588)
333 PRK02898 cobalt transport prot 20.2 33 0.00072 22.5 -0.1 32 3-37 34-65 (100)
334 cd03784 GT1_Gtf_like This fami 20.1 72 0.0016 25.2 1.8 20 65-84 307-326 (401)
335 PF15650 Tox-REase-9: Restrict 20.1 1.6E+02 0.0036 18.8 3.0 49 89-140 29-78 (89)
336 smart00012 PTPc_DSPc Protein t 20.1 1.5E+02 0.0033 18.0 3.1 17 61-77 39-55 (105)
337 smart00404 PTPc_motif Protein 20.1 1.5E+02 0.0033 18.0 3.1 17 61-77 39-55 (105)
338 COG1126 GlnQ ABC-type polar am 20.1 1.9E+02 0.0042 22.0 3.9 26 41-70 170-195 (240)
339 COG0488 Uup ATPase components 20.0 95 0.0021 26.5 2.6 28 47-80 189-216 (530)
No 1
>PRK01112 phosphoglyceromutase; Provisional
Probab=99.91 E-value=4.5e-24 Score=159.80 Aligned_cols=111 Identities=56% Similarity=0.947 Sum_probs=98.7
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l 80 (144)
+||.|||++++|+.++||+.+...|.+++..++|+|||+.++.+|+.+++++++.+....+++|||||||++||++++++
T Consensus 113 ~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~l 192 (228)
T PRK01112 113 MYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDL 192 (228)
T ss_pred cccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHH
Confidence 68999999999999999988788898877788999999999999999999987542223578999999999999999999
Q ss_pred hCCCccceeeeeecCCcEEEEEEcCCceeec
Q 032238 81 DKLTSQEVINLELSTGIPLLYIYKEGRFMKR 111 (144)
Q Consensus 81 ~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~ 111 (144)
++++.+.++.+.+++|+..+++++.+++-.+
T Consensus 193 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T PRK01112 193 EKLSEEEVLSLELPTGKPIVYEWTGQKFEKH 223 (228)
T ss_pred hCCCHHHHhhcccCCcceEEEEECCCCcccc
Confidence 9999999999999999999999998876653
No 2
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=99.91 E-value=1.2e-23 Score=157.69 Aligned_cols=116 Identities=37% Similarity=0.701 Sum_probs=95.7
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCC-------------------------CCCCCCCCCHHHHHHHHHHHHHHhhc
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSY-------------------------DIPPPNGESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~-------------------------~~~~pgGES~~~~~~Rv~~~l~~l~~ 55 (144)
+||.|||++.+|+.++||+..+..|..++ +.++|+|||+.++.+|+..++++++.
T Consensus 89 ~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv~~~l~~~~~ 168 (230)
T PRK14117 89 HYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIA 168 (230)
T ss_pred cchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999999999986566776421 23678999999999999999999863
Q ss_pred hhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCCceeecCCCCC
Q 032238 56 PQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEGRFMKRGSPVG 116 (144)
Q Consensus 56 ~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 116 (144)
...+.+++|||||||++||++++++++++...++.+.++||+..+++++++....+..+.+
T Consensus 169 ~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~~~~~~~~~~n~s~~~i~~~~~~~~~~~~~~~ 229 (230)
T PRK14117 169 PALKDGKNVFVGAHGNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEKLNVVKEYYLG 229 (230)
T ss_pred hhccCCCEEEEEeChHHHHHHHHHHhCcCHHHHhhcCCCCceEEEEEECCCCceeeccccC
Confidence 2223468999999999999999999999998888888999999999998776555444444
No 3
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=99.90 E-value=4.8e-23 Score=154.09 Aligned_cols=107 Identities=43% Similarity=0.802 Sum_probs=91.5
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCC-------------------------CCCCCCCCCHHHHHHHHHHHHHHhhc
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSY-------------------------DIPPPNGESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~-------------------------~~~~pgGES~~~~~~Rv~~~l~~l~~ 55 (144)
+||.|||++.+|+.+.+|+..+..|..++ ...+|+|||+.++.+|+.+++++++.
T Consensus 88 ~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv~~~l~~~~~ 167 (227)
T PRK14118 88 HYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERVLPFWEDQIA 167 (227)
T ss_pred cCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 69999999999999999987667776421 13579999999999999999999865
Q ss_pred hhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCCc
Q 032238 56 PQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEGR 107 (144)
Q Consensus 56 ~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~~ 107 (144)
...+++++|||||||++|+++++++++++...++.+.+++|+..++.++++.
T Consensus 168 ~~~~~~~~vlvVsHggvir~ll~~~l~~~~~~~~~~~i~~~s~~~~~~~~~~ 219 (227)
T PRK14118 168 PALLSGKRVLVAAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDNL 219 (227)
T ss_pred hhhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhcccCCCCceEEEEECCCC
Confidence 2124678999999999999999999999998888888999999999998763
No 4
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=99.90 E-value=4.3e-23 Score=154.42 Aligned_cols=107 Identities=42% Similarity=0.785 Sum_probs=92.4
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCC-------------------------CCCCCCCCHHHHHHHHHHHHHHhhc
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYD-------------------------IPPPNGESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~-------------------------~~~pgGES~~~~~~Rv~~~l~~l~~ 55 (144)
+||.|||++++|++++||+..+..|.++.. ..+|+|||+.++.+|+.+++++++.
T Consensus 89 ~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~l~~~~~ 168 (228)
T PRK14119 89 HYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHIS 168 (228)
T ss_pred ccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999999876778875422 2358999999999999999999875
Q ss_pred hhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCCc
Q 032238 56 PQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEGR 107 (144)
Q Consensus 56 ~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~~ 107 (144)
....++++|||||||++|+++++++++++...++.+.++||++.+++++++.
T Consensus 169 ~~~~~~~~vlvVsHg~vir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (228)
T PRK14119 169 QYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDL 220 (228)
T ss_pred hhccCCCeEEEEeChHHHHHHHHHHhCCCHHHHhhcCCCCCceEEEEECCCC
Confidence 3223678999999999999999999999998888888999999999998874
No 5
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=99.89 E-value=1.1e-22 Score=152.33 Aligned_cols=108 Identities=45% Similarity=0.850 Sum_probs=91.7
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhC-------------------------CCCCCCCCCCHHHHHHHHHHHHHHhhc
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRS-------------------------YDIPPPNGESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~-------------------------~~~~~pgGES~~~~~~Rv~~~l~~l~~ 55 (144)
+||.|||++++|+.+.+|+..+..|... ....+|+|||+.++.+|+..++++++.
T Consensus 89 ~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~Rv~~~l~~~i~ 168 (228)
T PRK14116 89 HYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLERVIPFWEDHIA 168 (228)
T ss_pred cchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999997656666532 124679999999999999999999764
Q ss_pred hhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCCce
Q 032238 56 PQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEGRF 108 (144)
Q Consensus 56 ~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~~~ 108 (144)
...+++++|||||||++|+++++++++++...++.+.++||+..++.++++.-
T Consensus 169 ~~~~~~~~vlvVsHg~vir~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T PRK14116 169 PDLLDGKNVIIAAHGNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDEKLN 221 (228)
T ss_pred HhhcCCCeEEEEcChHHHHHHHHHHhCCCHHHHHhccCCCCCeEEEEECCCCC
Confidence 22236789999999999999999999999999999999999999999987643
No 6
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.88 E-value=5.2e-22 Score=150.24 Aligned_cols=119 Identities=45% Similarity=0.777 Sum_probs=98.7
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCC-------------------------CCCCCCCCCHHHHHHHHHHHHHHhhc
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSY-------------------------DIPPPNGESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~-------------------------~~~~pgGES~~~~~~Rv~~~l~~l~~ 55 (144)
+||.|||++++|+.+.+|+..+..|.+++ ...+|+|||+.++.+|+.+++++++.
T Consensus 88 ~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~l~~~i~ 167 (247)
T PRK14115 88 HYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARVLPYWNETIA 167 (247)
T ss_pred ccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 69999999999999999987677776421 12478999999999999999999764
Q ss_pred hhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCCceeecCCCCCCCc
Q 032238 56 PQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEGRFMKRGSPVGPTE 119 (144)
Q Consensus 56 ~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 119 (144)
...+.+++|||||||++|+++++++++++...++.+.+++|..+++.++++..+-.+.+.+-.+
T Consensus 168 ~~~~~~~~vlvVtHggvir~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 231 (247)
T PRK14115 168 PQLKSGKRVLIAAHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDENLKPIKHYYLGDAD 231 (247)
T ss_pred HHhcCCCeEEEEeChHHHHHHHHHHhCCCHHHhheeecCCCceEEEEECCCCcEeeeEecCChH
Confidence 2234678999999999999999999999998889999999999999998876555555555444
No 7
>PRK01295 phosphoglyceromutase; Provisional
Probab=99.88 E-value=3.3e-22 Score=147.63 Aligned_cols=108 Identities=45% Similarity=0.896 Sum_probs=93.8
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCCCHHHHHHHHHHHH-HHhhchhccCCCeEEEEeehHHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYF-REHIEPQLQSGKHVMVAAHGNSLRSIIMY 79 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGES~~~~~~Rv~~~l-~~l~~~~~~~~~~VLvVsHG~vir~ll~~ 79 (144)
+||.|||++.+|+++.+|+.....|.++..+.+|+|||+.+|.+|+..++ +.+.. ....+++|||||||++|++++++
T Consensus 90 ~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~-~~~~~~~vliVtHg~~ir~l~~~ 168 (206)
T PRK01295 90 DYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILP-RVLRGERVLVAAHGNSLRALVMV 168 (206)
T ss_pred ccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHH-hccCCCeEEEEcChHHHHHHHHH
Confidence 69999999999999999987677787766788999999999999999985 55543 22357899999999999999999
Q ss_pred HhCCCccceeeeeecCCcEEEEEEcCCcee
Q 032238 80 LDKLTSQEVINLELSTGIPLLYIYKEGRFM 109 (144)
Q Consensus 80 l~~~~~~~~~~~~~~~g~~~i~~~~~~~~~ 109 (144)
+++++.+.++.+.+++|...++.++....+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (206)
T PRK01295 169 LDGLTPEQILKLELATGVPIVYRLNADSTV 198 (206)
T ss_pred HhCCCHHHHhhcCCCCCCcEEEEecCCCCc
Confidence 999999999999999999999999876544
No 8
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.87 E-value=9.5e-22 Score=148.66 Aligned_cols=119 Identities=43% Similarity=0.745 Sum_probs=97.2
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCC-------------------------CCCCCCCHHHHHHHHHHHHHHhhc
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDI-------------------------PPPNGESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~-------------------------~~pgGES~~~~~~Rv~~~l~~l~~ 55 (144)
+||.|||++.+++.+.||+..+..|..++.. .+|+|||+.++.+|+..++++++.
T Consensus 88 ~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv~~~l~~l~~ 167 (245)
T TIGR01258 88 HYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARVLPYWNDEIA 167 (245)
T ss_pred cCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 6999999999999999998767778643211 268999999999999999999864
Q ss_pred hhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCC-ceeecCCCCCCCc
Q 032238 56 PQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEG-RFMKRGSPVGPTE 119 (144)
Q Consensus 56 ~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~-~~~~~~~~~~~~~ 119 (144)
....++++|||||||++||++++++++++...++.+.+++|.+.++.++++ +.+.++..-+|..
T Consensus 168 ~~~~~~~~vlvVsHg~vir~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
T TIGR01258 168 PDLLSGKRVLIVAHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDENLKPIKHYYLGDPEA 232 (245)
T ss_pred hhhcCCCEEEEEcChHHHHHHHHHHHCcCHHHHhheecCCCceEEEEECCCCCEeeeeecCCHHH
Confidence 222467899999999999999999999999988888899999999888765 4455555555554
No 9
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.87 E-value=8e-22 Score=149.36 Aligned_cols=119 Identities=39% Similarity=0.691 Sum_probs=95.6
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCC-----------------------CCCCCCCHHHHHHHHHHHHHHhhchh
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDI-----------------------PPPNGESLEMCSKQAVAYFREHIEPQ 57 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~-----------------------~~pgGES~~~~~~Rv~~~l~~l~~~~ 57 (144)
+||.|||++.+|++++||+..+..|.+++.. ++|+|||+.++.+|+..++++++...
T Consensus 92 ~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~Rv~~~l~~~~~~~ 171 (249)
T PRK14120 92 HYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVARFLPYWEDDIVPD 171 (249)
T ss_pred cccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999997556777653221 24899999999999999999864322
Q ss_pred ccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCCceee--cCCCCCCCc
Q 032238 58 LQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEGRFMK--RGSPVGPTE 119 (144)
Q Consensus 58 ~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~--~~~~~~~~~ 119 (144)
.+.+++|||||||++||++++++++++.+.++.+.+++|++.+++++++.... .+...+|..
T Consensus 172 ~~~~~~iliVsHggvir~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (249)
T PRK14120 172 LKAGKTVLIAAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDEDFKPLNPGGTYLDPEA 235 (249)
T ss_pred hhCCCEEEEEeCHHHHHHHHHHHhCCCHHHhheeccCCCceEEEEECCCCcEecccceecCHHH
Confidence 34678999999999999999999999999999999999999999997754332 344445543
No 10
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=147.54 Aligned_cols=109 Identities=48% Similarity=0.842 Sum_probs=92.3
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCC-------------------------CCCCCCCCHHHHHHHHHHHHHHhhc
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYD-------------------------IPPPNGESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~-------------------------~~~pgGES~~~~~~Rv~~~l~~l~~ 55 (144)
+||.|||++++++.+.+|+..+..|..++. ..+|+|||+.++.+|+.+++++++.
T Consensus 76 ~~G~~EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~ 155 (236)
T PTZ00123 76 HYGALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIA 155 (236)
T ss_pred ccccccCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999876777764322 2358999999999999999999764
Q ss_pred hhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCCcee
Q 032238 56 PQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEGRFM 109 (144)
Q Consensus 56 ~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~~~~ 109 (144)
...+++++|||||||++|+++++++++++...++.+.++||++.+++++++...
T Consensus 156 ~~~~~~~~vliVsHG~vir~ll~~l~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 209 (236)
T PTZ00123 156 PDILAGKKVLVAAHGNSLRALVKYLDKMSEEDILELNIPTGVPLVYELDENLKP 209 (236)
T ss_pred HHhhCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCCCCE
Confidence 223467899999999999999999999999888888899999999999877433
No 11
>PRK13463 phosphatase PhoE; Provisional
Probab=99.87 E-value=9.9e-22 Score=144.62 Aligned_cols=105 Identities=12% Similarity=0.299 Sum_probs=89.9
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l 80 (144)
+||.|||++.+++++.||+.+...|.++..+.+|+|||+.++.+|+..+++++.. .+.+++|||||||++|+++++++
T Consensus 85 ~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~--~~~~~~vlvVsHg~~ir~~~~~~ 162 (203)
T PRK13463 85 NMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLE--KHKGESILIVSHAAAAKLLVGHF 162 (203)
T ss_pred CCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHH--hCCCCEEEEEeChHHHHHHHHHH
Confidence 6899999999999999998654556666678889999999999999999999865 35678999999999999999999
Q ss_pred hCCCccceeeee-ecCCcEEEEEEcCCc
Q 032238 81 DKLTSQEVINLE-LSTGIPLLYIYKEGR 107 (144)
Q Consensus 81 ~~~~~~~~~~~~-~~~g~~~i~~~~~~~ 107 (144)
++++.+.++.+. +++++..+++++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 190 (203)
T PRK13463 163 AGIEIENVWDDPFMHSASLSIIEFEDGK 190 (203)
T ss_pred hCCCHHHHhhccCccCceEEEEEEeCCc
Confidence 999988877754 578888888886554
No 12
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=99.86 E-value=2e-21 Score=142.45 Aligned_cols=104 Identities=13% Similarity=0.257 Sum_probs=90.2
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhh-CCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRR-SYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMY 79 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~-~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~ 79 (144)
+||.|||++..++.+.+|+. +..|.. +....+|+|||+.++.+|+.++++++.. .+.+++|||||||++|++++++
T Consensus 83 ~~G~~eg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~--~~~~~~iliVsHg~~i~~l~~~ 159 (199)
T PRK15004 83 FFGDWEMRHHRDLMQEDAEN-YAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSA--FQHYQNLLIVSHQGVLSLLIAR 159 (199)
T ss_pred CCcccCCCCHHHHHHHCHHH-HHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHH--hCCCCeEEEEcChHHHHHHHHH
Confidence 69999999999999999875 555654 4456788999999999999999999965 3567899999999999999999
Q ss_pred HhCCCccceeeeeecCCcEEEEEEcCCc
Q 032238 80 LDKLTSQEVINLELSTGIPLLYIYKEGR 107 (144)
Q Consensus 80 l~~~~~~~~~~~~~~~g~~~i~~~~~~~ 107 (144)
+++++...++.+.++||+..++.++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (199)
T PRK15004 160 LLGMPAEAMWHFRVEQGCWSAIDINQGF 187 (199)
T ss_pred HhCCCHHHHhccccCCceEEEEEecCCc
Confidence 9999988888888899999998887654
No 13
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.85 E-value=6.6e-21 Score=138.83 Aligned_cols=110 Identities=49% Similarity=0.922 Sum_probs=102.5
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCC---------------------CC----CCHHHHHHHHHHHHHHhhc
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPP---------------------NG----ESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~p---------------------gG----ES~~~~~~Rv~~~l~~l~~ 55 (144)
|||.++|++.++..++|+++....|++.++.+|| ++ ||+.++.+|+.+++++.+.
T Consensus 89 hYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~Rv~Pyw~~~I~ 168 (230)
T COG0588 89 HYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVLPYWEDDIA 168 (230)
T ss_pred hhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHHhhHHHHHHhh
Confidence 7999999999999999999999999998888888 44 9999999999999999988
Q ss_pred hhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCCceee
Q 032238 56 PQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEGRFMK 110 (144)
Q Consensus 56 ~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~ 110 (144)
+....|++||||+||..+|+++.++.+++.+++..+.+|||.+.+|+++++.-..
T Consensus 169 p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd~dI~~l~IPtg~Plvyeld~~l~~~ 223 (230)
T COG0588 169 PNLKSGKNVLIVAHGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNLKVI 223 (230)
T ss_pred HHHhCCCeEEEEecchhHHHHHHHHhCCCHHHhhhcccCCCCcEEEEECCCCcCc
Confidence 7778899999999999999999999999999999999999999999999875443
No 14
>PRK13462 acid phosphatase; Provisional
Probab=99.84 E-value=2.1e-20 Score=137.67 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=85.5
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l 80 (144)
+||.|||++..|+.+.+|+ +..|. ..+|+|||+.++.+|+..+++++.. .+.+++|||||||++||++++++
T Consensus 87 ~~G~~eG~~~~ei~~~~~~--~~~~~----~~~p~gES~~~~~~Rv~~~l~~i~~--~~~~~~vliVsHg~vir~ll~~~ 158 (203)
T PRK13462 87 DYGSYEGLTTPQIRESEPD--WLVWT----HGCPGGESVAQVNERADRAVALALE--HMESRDVVFVSHGHFSRAVITRW 158 (203)
T ss_pred CCccccCCcHHHHHHhCch--HHhhc----CCCCCCccHHHHHHHHHHHHHHHHH--hCCCCCEEEEeCCHHHHHHHHHH
Confidence 6999999999999999985 33443 2358999999999999999999865 35678999999999999999999
Q ss_pred hCCCccceeeeeecCCcEEEEEEcCCc
Q 032238 81 DKLTSQEVINLELSTGIPLLYIYKEGR 107 (144)
Q Consensus 81 ~~~~~~~~~~~~~~~g~~~i~~~~~~~ 107 (144)
++++...++.+.++||+..+++++++.
T Consensus 159 l~~~~~~~~~~~~~~~s~s~~~~~~~~ 185 (203)
T PRK13462 159 VELPLAEGSRFAMPTASIAICGFEHGV 185 (203)
T ss_pred hCCCHHHhhhcccCCceEEEEEeeCCc
Confidence 999988888888999999888887654
No 15
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.82 E-value=1.6e-19 Score=132.89 Aligned_cols=104 Identities=34% Similarity=0.584 Sum_probs=91.3
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhh-hCCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWR-RSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMY 79 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~-~~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~ 79 (144)
+||.|||++.+++.+.+|.. +..|. +++.+.+|+|||+.++.+|+..++.++.. .+.+++|||||||++||+++++
T Consensus 87 ~~G~~eg~~~~e~~~~~p~~-~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~--~~~~~~vlvVsHg~~ir~l~~~ 163 (208)
T COG0406 87 DFGDWEGLTIDELAEEPPEE-LAAWLADPYLAPPPGGESLADVSKRVVAALAELLR--SPPGNNVLVVSHGGVIRALLAY 163 (208)
T ss_pred ecccccCCcHHHHHHhCHHH-HHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHH--hcCCCeEEEEEChHHHHHHHHH
Confidence 58999999999999999975 56665 56678888899999999999999999976 2445589999999999999999
Q ss_pred HhCCCccceeeeeecCCcEEEEEEcCCc
Q 032238 80 LDKLTSQEVINLELSTGIPLLYIYKEGR 107 (144)
Q Consensus 80 l~~~~~~~~~~~~~~~g~~~i~~~~~~~ 107 (144)
+++++....+.+.++|++..++.++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~si~~l~~~~~~ 191 (208)
T COG0406 164 LLGLDLEELWRLRLDNASVTVLEFDDGR 191 (208)
T ss_pred hcCCChhhHHhcCCCCceEEEEEeeCCC
Confidence 9999887778888999999999999875
No 16
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=99.81 E-value=2e-19 Score=132.22 Aligned_cols=104 Identities=21% Similarity=0.211 Sum_probs=86.1
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhh-CCCCCCCCCCCHHHHHHHHHHHHHHhhch---hccCCCeEEEEeehHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRR-SYDIPPPNGESLEMCSKQAVAYFREHIEP---QLQSGKHVMVAAHGNSLRSI 76 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~-~~~~~~pgGES~~~~~~Rv~~~l~~l~~~---~~~~~~~VLvVsHG~vir~l 76 (144)
+||.|||++++++.+. ..+..|.. +....+|+|||+.++.+|+..+++++... ..+.+++|||||||++|+++
T Consensus 83 ~~G~~eG~~~~e~~~~---~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~l 159 (204)
T TIGR03848 83 DYGDWTGRELKELAKE---PLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKSV 159 (204)
T ss_pred CCCeeCCcCHHHHhCc---HHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHHH
Confidence 6899999999999754 13455553 55677899999999999999999998641 01356799999999999999
Q ss_pred HHHHhCCCccceeeeeecCCcEEEEEEcCCc
Q 032238 77 IMYLDKLTSQEVINLELSTGIPLLYIYKEGR 107 (144)
Q Consensus 77 l~~l~~~~~~~~~~~~~~~g~~~i~~~~~~~ 107 (144)
++.+++++.+.++.+.++||+..++.++++.
T Consensus 160 l~~~lg~~~~~~~~~~~~n~sit~l~~~~~~ 190 (204)
T TIGR03848 160 LADALGMHLDLFQRIVVDPCSVSVVRYTPLR 190 (204)
T ss_pred HHHHhCCCHHHhheeeeCCCeEEEEEEeCCc
Confidence 9999999998888889999999988887654
No 17
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.80 E-value=2.7e-19 Score=128.46 Aligned_cols=96 Identities=23% Similarity=0.461 Sum_probs=82.9
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhh-CCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRR-SYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMY 79 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~-~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~ 79 (144)
+||.|||++.+++.+.+| . +..|.. +....+|+|||+.++.+|+.++++++.. ..++++|||||||++|++++++
T Consensus 80 ~~G~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~--~~~~~~vlvVsHg~~i~~l~~~ 155 (177)
T TIGR03162 80 DFGDWEGRSWDEIPEAYP-E-LDAWAADWQHARPPGGESFADFYQRVSEFLEELLK--AHEGDNVLIVTHGGVIRALLAH 155 (177)
T ss_pred cCCccCCCCHHHHHHhCH-H-HHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHH
Confidence 589999999999999998 3 455654 5557889999999999999999999975 2467899999999999999999
Q ss_pred HhCCCccceeeeeecCCcEEE
Q 032238 80 LDKLTSQEVINLELSTGIPLL 100 (144)
Q Consensus 80 l~~~~~~~~~~~~~~~g~~~i 100 (144)
+++++++..+.+.++||+..+
T Consensus 156 ~~~~~~~~~~~~~~~n~~i~~ 176 (177)
T TIGR03162 156 LLGLPLEQWWSFDVEYGSITL 176 (177)
T ss_pred HhCCCHHHHhccccCCeeEEe
Confidence 999999888888888887654
No 18
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.80 E-value=6.8e-19 Score=130.39 Aligned_cols=103 Identities=20% Similarity=0.195 Sum_probs=83.9
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhh-hCCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWR-RSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMY 79 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~-~~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~ 79 (144)
+||.|||++.+++...++. +...+. .+....+|+|||+.++.+|+..+++++.. .+.+++|||||||++|++++++
T Consensus 84 ~~G~~eg~~~~~~~~~~~~-~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~--~~~~~~vliVsHg~~i~~l~~~ 160 (215)
T PRK03482 84 NMGVLEKRHIDSLTEEEEG-WRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLE--LPQGSRPLLVSHGIALGCLVST 160 (215)
T ss_pred CCccccCCcHHHHHhhHHH-HHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHH--hCCCCeEEEEeCcHHHHHHHHH
Confidence 5899999999998765432 222222 24456789999999999999999999865 3567899999999999999999
Q ss_pred HhCCCccceeeeeecCCcEEEEEEcCC
Q 032238 80 LDKLTSQEVINLELSTGIPLLYIYKEG 106 (144)
Q Consensus 80 l~~~~~~~~~~~~~~~g~~~i~~~~~~ 106 (144)
+++++.+..+.+.++||++.++.++++
T Consensus 161 l~~~~~~~~~~~~~~n~sis~~~~~~~ 187 (215)
T PRK03482 161 ILGLPAWAERRLRLRNCSISRVDYQES 187 (215)
T ss_pred HhCCChhhhhccCCCCcEEEEEEEeCC
Confidence 999998888888889999888887653
No 19
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.78 E-value=1.4e-18 Score=138.33 Aligned_cols=102 Identities=20% Similarity=0.302 Sum_probs=89.3
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l 80 (144)
+||.|||++.+|+.+.||+. +..|..+....+|+|||+.++.+|+..+++++.. .+.+++|||||||++|+++++++
T Consensus 255 ~~G~~eg~~~~ei~~~~p~~-~~~w~~~~~~~~p~gEs~~~~~~Rv~~~l~~l~~--~~~~~~vlvVtHg~~ir~ll~~~ 331 (372)
T PRK07238 255 DFGAWEGLTFAEAAERDPEL-HRAWLADTSVAPPGGESFDAVARRVRRARDRLIA--EYPGATVLVVSHVTPIKTLLRLA 331 (372)
T ss_pred CCCccCCCCHHHHHHHCHHH-HHHHHhCCCCCCcCCCCHHHHHHHHHHHHHHHHH--HCCCCeEEEEEChHHHHHHHHHH
Confidence 58999999999999999975 5667765567789999999999999999999865 35678999999999999999999
Q ss_pred hCCCccceeeeeecCCcEEEEEEcC
Q 032238 81 DKLTSQEVINLELSTGIPLLYIYKE 105 (144)
Q Consensus 81 ~~~~~~~~~~~~~~~g~~~i~~~~~ 105 (144)
++++...++.+.++++...++.++.
T Consensus 332 l~~~~~~~~~~~~~~~~~s~l~~~~ 356 (372)
T PRK07238 332 LDAGPGVLYRLHLDLASLSIAEFYP 356 (372)
T ss_pred hCCCHHHhhhcccCCceEEEEEEEC
Confidence 9999888888888899888887754
No 20
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.76 E-value=5.6e-18 Score=143.53 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=85.2
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhh-hCCCCCCCCCCCHHHHH-HHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWR-RSYDIPPPNGESLEMCS-KQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIM 78 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~-~~~~~~~pgGES~~~~~-~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~ 78 (144)
+||.|||++++|+.+.||+. +..|. +++.+++|+|||+.++. .|+.+++.++.. ..++|||||||++||++++
T Consensus 520 ~fG~wEG~t~~ei~~~~p~~-~~~~~~d~~~~~~P~GES~~d~~~~R~~~~i~~l~~----~~~~ilvVsHg~vir~ll~ 594 (664)
T PTZ00322 520 NHGDCEGQLLSDVRRTMPNT-LQSMKADPYYTAWPNGECIHQVFNARLEPHIHDIQA----STTPVLVVSHLHLLQGLYS 594 (664)
T ss_pred CCcccCCCCHHHHHHhCcHH-HHHHHhCCCcCCCCCCcCHHHHHHHHHHHHHHHHHc----cCCCEEEEeCcHHHHHHHH
Confidence 69999999999999999986 56666 46778899999999976 799999999843 3478999999999999999
Q ss_pred HHhCC-----CccceeeeeecCCcEEEEEEcC
Q 032238 79 YLDKL-----TSQEVINLELSTGIPLLYIYKE 105 (144)
Q Consensus 79 ~l~~~-----~~~~~~~~~~~~g~~~i~~~~~ 105 (144)
++++. ++..++.+.++++....+.+.+
T Consensus 595 ~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 626 (664)
T PTZ00322 595 YFVTDGDNIVAPQNAYKIDIPFEHVIKIRMVG 626 (664)
T ss_pred HHhcCCccccCcccCceeeccCCcEEEEEEec
Confidence 99985 6777888888888877776665
No 21
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.2e-16 Score=116.42 Aligned_cols=108 Identities=42% Similarity=0.771 Sum_probs=93.7
Q ss_pred CcccCCCCCHHHHHHHhhHHHH-Hhhhh--CCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELV-HGWRR--SYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSII 77 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~-~~~~~--~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll 77 (144)
+||+++|+...|+.+.+|++.. ..|+. .....+|.|||+.++.+|+.+++++.+.++...+++||||+||.++|+++
T Consensus 93 ~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~i~ 172 (214)
T KOG0235|consen 93 HYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRAIV 172 (214)
T ss_pred hhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHHHH
Confidence 6999999999999999997632 44432 23456889999999999999999998876666789999999999999999
Q ss_pred HHHhCCCccceeeeeecCCcEEEEEEcCCce
Q 032238 78 MYLDKLTSQEVINLELSTGIPLLYIYKEGRF 108 (144)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~g~~~i~~~~~~~~ 108 (144)
.++.|++.+.+..+..++|.+.+++++....
T Consensus 173 ~~l~g~s~~~i~~~~~~t~vp~v~~ld~~~~ 203 (214)
T KOG0235|consen 173 KHLEGISDEAIKELNLPTGVPIVYELDKNKI 203 (214)
T ss_pred HHHhcCCHhhhhheecccCCceEEEcccccc
Confidence 9999999999999999999999999987654
No 22
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.52 E-value=4e-14 Score=98.83 Aligned_cols=75 Identities=27% Similarity=0.542 Sum_probs=62.5
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSI 76 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~l 76 (144)
++|.|+|++..++.+.+|......+..+....+|+|||+.++..|+..+++.+.. ...++++|+|||||++|++|
T Consensus 84 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~-~~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 84 DFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIA-YKRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp GCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHH-HHHTTSEEEEEE-HHHHHHH
T ss_pred cchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHH-HhCCCCEEEEEecHHHHHhC
Confidence 3689999999999999996544444456778889999999999999999999974 23678999999999999986
No 23
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.52 E-value=3.1e-14 Score=100.12 Aligned_cols=72 Identities=29% Similarity=0.469 Sum_probs=58.6
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSI 76 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~l 76 (144)
++|.|+|++.+++.+.+|.. |..+..+.+|+|||+.++..|+.++++++.......+++|||||||++|+++
T Consensus 84 ~~G~~~g~~~~~~~~~~~~~----~~~~~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~~ 155 (155)
T smart00855 84 DYGAWEGLTKEEERAKAWTR----PADWLGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRAL 155 (155)
T ss_pred ccceecCCcHHHHHHHHHHH----HhccCCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCcccccC
Confidence 58999999999999887753 2333556789999999999999999999865211256799999999999864
No 24
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=5.2e-12 Score=101.10 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=80.3
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l 80 (144)
+-|..+|++.+||.+.||+++...-.+++.++.|+|||+.|+..|..+.+-++- ... +|+|+||-.+||+++.++
T Consensus 320 ~ag~~~g~t~eeI~~~~p~e~~~r~~dky~yry~~gESy~D~v~RlePvImElE----r~~-~Vlvi~Hqavircll~Yf 394 (438)
T KOG0234|consen 320 DAGVCEGLTYEEIETNYPEEFALRDKDKYRYRYPGGESYSDLVQRLEPVIMELE----RQE-NVLVITHQAVIRCLLAYF 394 (438)
T ss_pred cccccccccHHHHHHhCchhhhhccCCcceeecCCCCCHHHHHHhhhhHhHhhh----hcc-cEEEEecHHHHHHHHHHH
Confidence 468999999999999999875545456778899999999999999999999973 223 399999999999999999
Q ss_pred hCCCccceeeeeecCCcEEEEE
Q 032238 81 DKLTSQEVINLELSTGIPLLYI 102 (144)
Q Consensus 81 ~~~~~~~~~~~~~~~g~~~i~~ 102 (144)
+++++..+..+.++-...+.+.
T Consensus 395 ~~~~~~e~p~l~~plhtv~~l~ 416 (438)
T KOG0234|consen 395 LNCSPVELPYLTVPLHTVIKLT 416 (438)
T ss_pred hcCCHhhcccccccceeEEEEe
Confidence 9999887777766655544444
No 25
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.03 E-value=6.5e-10 Score=86.43 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=57.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhchhcc-CCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcC
Q 032238 32 PPPNGESLEMCSKQAVAYFREHIEPQLQ-SGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKE 105 (144)
Q Consensus 32 ~~pgGES~~~~~~Rv~~~l~~l~~~~~~-~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~ 105 (144)
.++++|+ .++.+|+..++++++..... .++++||||||++||++++.+++++...++.+.++||+..++.+.+
T Consensus 203 ~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVVsHGgvIR~ll~~lLglp~~~~~~~~~~N~sit~l~~~~ 276 (299)
T PTZ00122 203 KPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIVCHGNVIRYLVCRALQLPPEAWLRLSLYNCGITWIVISS 276 (299)
T ss_pred CCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEEeCChHHHHHHHHHhCcCHHHHhhccCCCceEEEEEEeC
Confidence 4455555 77799999999998752111 2357899999999999999999999888777778898888877753
No 26
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=98.59 E-value=1.2e-07 Score=65.98 Aligned_cols=65 Identities=26% Similarity=0.492 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCC
Q 032238 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEG 106 (144)
Q Consensus 38 S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~ 106 (144)
.+.+ +|+..+++.+.. .+.+++|+|||||++|+++++++++.+...++.+.+++|+...+.+++.
T Consensus 80 ~L~e--~R~~~~~~~l~~--~~~~~~iliV~H~~~i~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~ 144 (153)
T cd07067 80 RLRE--ARVLPALEELIA--PHDGKNVLIVSHGGVLRALLAYLLGLSDEDILRLNLPNGSISVLELDEN 144 (153)
T ss_pred cchH--HHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhCCCHHHHHhcCCCCceEEEEEEeCC
Confidence 4444 899999999865 2367899999999999999999999888777777889999888887653
No 27
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=98.33 E-value=1.9e-06 Score=59.48 Aligned_cols=63 Identities=25% Similarity=0.474 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcCC
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKEG 106 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~~ 106 (144)
+|+.+++.+++.....++++|++||||++|+.+++++.+.+....+.+.+++|+..++++...
T Consensus 82 ~r~~~~~~~~~~~~~~~~~~iliv~H~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (153)
T cd07040 82 ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEILSLNLPNGSILVLELDEC 144 (153)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHhCcCHHHhccccCCCCceEEEEEcCC
Confidence 899999999876211257899999999999999999999887766777788998888887653
No 28
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.00012 Score=56.16 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCCc
Q 032238 33 PPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTS 85 (144)
Q Consensus 33 ~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~~ 85 (144)
+-.+||.+++..|+...+.+|+. ...+++||||+||..+.+..+.+.|.+.
T Consensus 168 ~~~~es~e~~~~R~~~~~k~i~~--k~~~~~lLIV~H~~sv~~~~~~l~~~~~ 218 (272)
T KOG3734|consen 168 PRWGESLEDCNDRIQKVFKAIAD--KYPNENLLIVAHGSSVDTCSAQLQGLPV 218 (272)
T ss_pred ccccccHHHHHHHHHHHHHHHHH--hcCCCceEEEeccchHHHHHHHhcCCCc
Confidence 44689999999999999999987 3678889999999999999998888553
No 29
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=97.41 E-value=0.00064 Score=50.54 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhchhcc----CCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEc
Q 032238 41 MCSKQAVAYFREHIEPQLQ----SGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYK 104 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~----~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~ 104 (144)
.=..|+..++.+.+.. .. .+.--|||+|+.|||.+++..+.+|++.+.++.+++|++.-+.+.
T Consensus 194 rdgaRIEaafRryfhR-A~p~QeedSy~liV~HaNVIRY~icRALq~PpegWlR~nlnh~SiTWlti~ 260 (284)
T KOG4609|consen 194 RDGARIEAAFRRYFHR-ASPSQEEDSYELIVCHANVIRYFICRALQFPPEGWLRMNLNHCSITWLTIS 260 (284)
T ss_pred hcchHHHHHHHHHHhh-cCcccccccEEEEEeecchhhhhhhhhhcCCcchhheecccCcceEEEEEc
Confidence 3346999999988652 22 233579999999999999999999999999999999988766665
No 30
>PRK06193 hypothetical protein; Provisional
Probab=96.88 E-value=0.0035 Score=46.45 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhC
Q 032238 34 PNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDK 82 (144)
Q Consensus 34 pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~ 82 (144)
|.+|+...+.+|+..+++++- ...++||||+|+..|+.++..+.+
T Consensus 132 ~~~~~~~~y~~~l~~~I~~l~----~~~~~vLlVgHnp~i~~l~g~~~~ 176 (206)
T PRK06193 132 VPAERNALLKAGLRPLLTTPP----DPGTNTVLVGHDDNLEAATGIYPE 176 (206)
T ss_pred CChhhHHHHHHHHHHHHhhCC----CCCCeEEEEeCchHHHHHhCCCCc
Confidence 356889999999999999872 467899999999999998886544
No 31
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=96.28 E-value=0.016 Score=40.73 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcC
Q 032238 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKE 105 (144)
Q Consensus 37 ES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~ 105 (144)
++..+ +..++..+.. ...++|+||+|+..|..++.++.+.+.. ..+++|....++++.
T Consensus 83 ~~~~~----~~~~l~~~~~---~~~~~vliVgH~P~i~~l~~~l~~~~~~----~~~~~~~~~~l~~~~ 140 (152)
T TIGR00249 83 GDIGL----VSDYLEALTN---EGVASVLLVSHLPLVGYLVAELCPGENP----IMFTTGAIASLLWDE 140 (152)
T ss_pred CCHHH----HHHHHHHHHh---cCCCEEEEEeCCCCHHHHHHHHhCCCCC----CcCcceeEEEEEEec
Confidence 45554 4444455422 2467999999999999999999874321 357788888888763
No 32
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=94.08 E-value=0.15 Score=38.11 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=50.4
Q ss_pred CCCHHHHHHHhhHHHHHhhhhC--CCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHh
Q 032238 7 GLNKQETAERYGKELVHGWRRS--YDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLD 81 (144)
Q Consensus 7 G~~~~ei~~~~p~~~~~~~~~~--~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~ 81 (144)
|.+.++..+-||...+..-..+ +...+--.|+..+...|-..+++.+.. .+.+-|.||||++.|+.++..+-
T Consensus 127 r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~re~~~~l~~---r~ek~iavvths~fl~~llk~i~ 200 (248)
T KOG4754|consen 127 RSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSREFLEWLAK---RPEKEIAVVTHSGFLRSLLKKIQ 200 (248)
T ss_pred cchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHhHHHHHHHHHh---CccceEEEEEehHHHHHHHHHhc
Confidence 4556677777774222211111 122333469999999999999999843 56788999999999999888764
No 33
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=93.83 E-value=0.32 Score=34.33 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=36.5
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEc
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYK 104 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~ 104 (144)
.+..++..+.. ...++||||+|.-.+..+...+.+-.... .+++|....++++
T Consensus 87 ~~~~~l~~~~~---~~~~~vllVgH~P~l~~l~~~L~~~~~~~----~~~t~~i~~l~~~ 139 (159)
T PRK10848 87 LVSAYLQALAN---EGVASVLVISHLPLVGYLVAELCPGETPP----MFTTSAIACVTLD 139 (159)
T ss_pred HHHHHHHHHHh---cCCCeEEEEeCcCcHHHHHHHHhCCCCCC----CcCCceEEEEEec
Confidence 34444554422 34579999999999999999887532211 2678888888886
No 34
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=93.66 E-value=0.25 Score=36.50 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCC
Q 032238 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLT 84 (144)
Q Consensus 37 ES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~ 84 (144)
|.+.+.-.+..+++.+++. ..++++||||+|+..+..+.....+.+
T Consensus 129 ~~Lye~~~~~~~~i~~~i~--~~~~~tVLIVGHnp~i~~La~~~~~~~ 174 (201)
T PRK15416 129 KRLSDCGNGIYSAIKDLQR--KSPDKNIVIFTHNHCLTYIAKDKRGVK 174 (201)
T ss_pred HHHhhcCchhHHHHHHHHH--hCCCCEEEEEeCchhHHHHHHHhcCCC
Confidence 4456666777777777765 245689999999999999998766543
No 35
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=81.99 E-value=6.7 Score=30.75 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCCcc
Q 032238 40 EMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQ 86 (144)
Q Consensus 40 ~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~ 86 (144)
..+.+|+..++..+.. +++++|+||+||.-...++.++......
T Consensus 174 ~~~~ari~Aa~~~~~~---~~~~~ivlIg~G~gA~~~~~~la~~~~~ 217 (310)
T PF12048_consen 174 ERLFARIEAAIAFAQQ---QGGKNIVLIGHGTGAGWAARYLAEKPPP 217 (310)
T ss_pred HHHHHHHHHHHHHHHh---cCCceEEEEEeChhHHHHHHHHhcCCCc
Confidence 3556666666666532 5678899999999999898888765543
No 36
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=71.89 E-value=4.2 Score=29.48 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 37 ES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
-|..++.+|+..|++.|.+ .|+..-||+|+|-
T Consensus 71 ~~~~~~~~~~~~fv~~iR~--~hP~tPIllv~~~ 102 (178)
T PF14606_consen 71 MSPEEFRERLDGFVKTIRE--AHPDTPILLVSPI 102 (178)
T ss_dssp CCTTTHHHHHHHHHHHHHT--T-SSS-EEEEE--
T ss_pred CCHHHHHHHHHHHHHHHHH--hCCCCCEEEEecC
Confidence 4677999999999999865 5888999999964
No 37
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=70.82 E-value=20 Score=23.79 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEee--hHHHHHHHHHHh
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAH--GNSLRSIIMYLD 81 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH--G~vir~ll~~l~ 81 (144)
.+.+++.+.+.+++. .++..+|+|++| ||.+..++...+
T Consensus 45 ~~~~~~~~~l~~~~~--~~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 45 SLYDQILDALKELVE--KYPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHHHH--HSTTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cccCccchhhccchHHHHHHHHHHhh
Confidence 555677788888765 355689999999 788877777654
No 38
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=68.92 E-value=18 Score=25.87 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=32.3
Q ss_pred CCeEEEEeehHHHHHHHHHHhCCCccceeeeeecCCcEEEEEEcC
Q 032238 61 GKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIPLLYIYKE 105 (144)
Q Consensus 61 ~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~~i~~~~~ 105 (144)
-.+|++|+|--.+..+...+.+- .-....++++...++.++.
T Consensus 101 v~~vllVgH~P~l~~l~~~L~~~---~~~~~~fptsgia~l~~~~ 142 (163)
T COG2062 101 VGSVLLVGHNPLLEELALLLAGG---ARLPVKFPTSGIAVLEFDG 142 (163)
T ss_pred CceEEEECCCccHHHHHHHHccc---cccccCCCcccEEEEEecc
Confidence 47999999999999999988763 1223347788888888874
No 39
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=65.59 E-value=11 Score=29.23 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHH
Q 032238 39 LEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLR 74 (144)
Q Consensus 39 ~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir 74 (144)
-.+...++.+.+.++. ..+..|++||||++--
T Consensus 29 ~~~~l~~l~~~i~~l~----~~g~~vilVssGAv~~ 60 (284)
T cd04256 29 ALGRLASIVEQVSELQ----SQGREVILVTSGAVAF 60 (284)
T ss_pred CHHHHHHHHHHHHHHH----HCCCEEEEEeeCcHHh
Confidence 3566777777777763 3478999999998764
No 40
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=65.49 E-value=16 Score=24.26 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEee---hHHHHHHHHHH
Q 032238 31 IPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAH---GNSLRSIIMYL 80 (144)
Q Consensus 31 ~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH---G~vir~ll~~l 80 (144)
+..+.+++..++.+|+.+.++++ .+++.|+|.|- |.+...+...+
T Consensus 33 i~~~~~~~~~~~~~~l~~~i~~~-----~~~~~vivltDl~GGSp~n~a~~~~ 80 (116)
T TIGR00824 33 VPFVPGENAETLQEKYNAALADL-----DTEEEVLFLVDIFGGSPYNAAARII 80 (116)
T ss_pred EEcCCCcCHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 34567999999999999999886 23566788776 44444444443
No 41
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=64.27 E-value=6.7 Score=30.27 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHH
Q 032238 35 NGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRS 75 (144)
Q Consensus 35 gGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ 75 (144)
.+.|+.+..+++.+.++... .-+..|++.+|||.|..
T Consensus 190 ~~~sl~~a~~~~~~i~~aa~----~v~~dii~l~hGGPI~~ 226 (268)
T PF09370_consen 190 TALSLEEAAERIQEIFDAAR----AVNPDIIVLCHGGPIAT 226 (268)
T ss_dssp -S--HHHHHHHHHHHHHHHH----CC-TT-EEEEECTTB-S
T ss_pred ccCCHHHHHHHHHHHHHHHH----HhCCCeEEEEeCCCCCC
Confidence 46799999999999888864 34667899999999864
No 42
>PRK04946 hypothetical protein; Provisional
Probab=62.23 E-value=35 Score=24.76 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeeh---HHHHHHHHHHhC
Q 032238 35 NGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHG---NSLRSIIMYLDK 82 (144)
Q Consensus 35 gGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG---~vir~ll~~l~~ 82 (144)
.|=+..+..+.+..||.... ..+-..+.|-|| ++++..+..++.
T Consensus 101 hG~~~eeA~~~L~~fl~~a~----~~g~r~v~IIHGkG~gvLk~~V~~wL~ 147 (181)
T PRK04946 101 HGLTQLQAKQELGALIAACR----KEHVFCACVMHGHGKHILKQQTPLWLA 147 (181)
T ss_pred CCCCHHHHHHHHHHHHHHHH----HcCCCEEEEEcCCCHhHHHHHHHHHHc
Confidence 57799999999999998864 346677888899 999988888875
No 43
>TIGR02935 probable nitrogen fixation protein. Members of this protein family, called DUF269 by Pfam model pfam03270, are strictly limited to nitrogen-fixing species, although not universal among them. The gene typically is found next to the nifX gene (see TIGRFAMs model TIGR02663).
Probab=61.35 E-value=22 Score=24.76 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=32.6
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYFREH 53 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGES~~~~~~Rv~~~l~~l 53 (144)
.||.|++++.+++-+.|--. + ..... -|-.|+.-.+..-|+..|.+.+
T Consensus 17 tyG~w~~~sDe~lL~pfIvt--k--e~rr~-ipi~gdpDp~tl~Ri~~Fy~Av 64 (140)
T TIGR02935 17 TYGAWEGKSDAELLAPYIVT--K--EERRE-IPIIGDPDPETLWRIELFYNAV 64 (140)
T ss_pred CccccCCCChHHHHHhhcCC--H--HHhcc-CCCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999998755311 1 11111 2335777778888999998776
No 44
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=60.49 E-value=11 Score=28.49 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHH
Q 032238 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRS 75 (144)
Q Consensus 37 ES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ 75 (144)
+|+.+..+|+.+.+..+ .++++.++|||+++.-.
T Consensus 127 ~s~~eA~~~ive~~~~~-----~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 127 ISLEESAQRIIAAAKKA-----PPDLPLILLAHNGPSGL 160 (238)
T ss_pred CCHHHHHHHHHHHhhhc-----CCCCCeEEEeCcCCcCC
Confidence 46666666666666422 34667899999997544
No 45
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=56.67 E-value=59 Score=25.84 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCCccceee
Q 032238 36 GESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVIN 90 (144)
Q Consensus 36 GES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~ 90 (144)
+.......+++-.+-...+.....++ .++-|++|-++.+++.++...+...+.-
T Consensus 90 ~~~~~~~~~~lg~aaA~~l~~~l~~g-dvigV~wGrTv~a~~~~l~~~~~~~~~v 143 (321)
T COG2390 90 SDADDSILRRLGRAAAQYLESLLKPG-DVIGVGWGRTLSAVVDNLPPAPLRDVKV 143 (321)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCCCC-CEEEEeccHHHHHHHHhcCcCccCCeEE
Confidence 33444444444444333333222334 4999999999999999886655444433
No 46
>PRK10481 hypothetical protein; Provisional
Probab=56.48 E-value=24 Score=26.58 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=41.5
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCC----CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGE----SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGE----S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
++|..+|++.+||.+.|+... . ....--+..+|. |-..+..|+++.+..+-. .+-+-|++.|-|.
T Consensus 33 ~~g~Ld~l~~~ei~~~~ap~~-~--~~~lvtrL~dG~~v~~s~~~v~~~lq~~i~~l~~---~g~d~ivl~Ctgd 101 (224)
T PRK10481 33 HAGLLDGLSREEIMAAYAPEA-G--EDVLVTRLNDGQQVHVSKQKVERDLQSVIEVLDN---QGYDVILLLCTGE 101 (224)
T ss_pred EecccCCCCHHHHHHhcCCCC-C--CceeEEEecCCCEEEEEHHHHHHHHHHHHHHHHh---CCCCEEEEEecCC
Confidence 479999999999977776421 0 001112456776 667788888888888632 3345666666553
No 47
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=54.05 E-value=29 Score=25.68 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHH
Q 032238 34 PNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSII 77 (144)
Q Consensus 34 pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll 77 (144)
+.++....+.++..+++++.+. ...++.+++|||=.+....+
T Consensus 139 ~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~ivvtH~pP~~~~~ 180 (239)
T TIGR03729 139 KRPMSDPERTAIVLKQLKKQLN--QLDNKQVIFVTHFVPHRDFI 180 (239)
T ss_pred CCCCChHHHHHHHHHHHHHHHH--hcCCCCEEEEEcccchHHHh
Confidence 3456677788888888888765 24457799999987655433
No 48
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=53.86 E-value=37 Score=22.17 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=34.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEee---hHHHHHHHHHHhCC
Q 032238 32 PPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAH---GNSLRSIIMYLDKL 83 (144)
Q Consensus 32 ~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH---G~vir~ll~~l~~~ 83 (144)
..+.+++..++.+++.+.++++ ..++.|+|.+- |.+....+..+...
T Consensus 33 ~~~~~~~~~~~~~~l~~~i~~~-----~~~~~vlil~Dl~ggsp~n~a~~~~~~~ 82 (116)
T PF03610_consen 33 DLYPDESIEDFEEKLEEAIEEL-----DEGDGVLILTDLGGGSPFNEAARLLLDK 82 (116)
T ss_dssp EETTTSCHHHHHHHHHHHHHHC-----CTTSEEEEEESSTTSHHHHHHHHHHCTS
T ss_pred ECcCCCCHHHHHHHHHHHHHhc-----cCCCcEEEEeeCCCCccchHHHHHhccC
Confidence 3467799999999999999765 34677888864 55566666655443
No 49
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.58 E-value=40 Score=28.08 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=36.0
Q ss_pred cccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCC---CCHHHHHHHHHHHHHHhhchhccCCCeEEE
Q 032238 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPPNG---ESLEMCSKQAVAYFREHIEPQLQSGKHVMV 66 (144)
Q Consensus 2 ~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgG---ES~~~~~~Rv~~~l~~l~~~~~~~~~~VLv 66 (144)
-|-|.+++..++-.... ..|-+ ....-+| =|+.++.+|+.+.-..+...-..+|++|||
T Consensus 22 ~GyW~d~~l~d~L~~~A----~~~pd--riAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlv 83 (542)
T COG1021 22 KGYWQDRTLTDILTDHA----ARYPD--RIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLV 83 (542)
T ss_pred cCcccCCcHHHHHHHHH----hhcCC--ceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 37899999988876432 22222 1222233 489999998888776663312346777654
No 50
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=53.54 E-value=17 Score=27.88 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 40 EMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 40 ~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+..+++.+-+.++. ..+..|+||+||++
T Consensus 30 ~~~i~~~~~~I~~~~----~~g~~vvlV~Sga~ 58 (266)
T PRK12314 30 LERIEQLVFVISDLM----NKGKEVILVSSGAI 58 (266)
T ss_pred HHHHHHHHHHHHHHH----HCCCeEEEEeeCcc
Confidence 355555555555543 34667999999843
No 51
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=53.19 E-value=24 Score=26.95 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 39 LEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 39 ~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
-..|.+++..-+.+.++ .+.+|++|||--
T Consensus 179 D~~F~~K~~~rl~e~~~----~~~tiv~VSHd~ 207 (249)
T COG1134 179 DAAFQEKCLERLNELVE----KNKTIVLVSHDL 207 (249)
T ss_pred CHHHHHHHHHHHHHHHH----cCCEEEEEECCH
Confidence 35788888888888754 358999999973
No 52
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=52.69 E-value=33 Score=25.56 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=23.0
Q ss_pred CCCCH--HHHHHHHHHHHHHhhchhccCCCeEEEEeeh--HHHHHHHH
Q 032238 35 NGESL--EMCSKQAVAYFREHIEPQLQSGKHVMVAAHG--NSLRSIIM 78 (144)
Q Consensus 35 gGES~--~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG--~vir~ll~ 78 (144)
||.++ .+..+++.+.+..+. ..+..++||+|| +.+..++.
T Consensus 7 GGs~l~~~~~~~~~~~~i~~l~----~~g~~~vvV~sg~g~~~~~l~~ 50 (239)
T cd04261 7 GGTSVASIERIKRVAERIKKRK----KKGNQVVVVVSAMGGTTDELIE 50 (239)
T ss_pred CCcccCCHHHHHHHHHHHHHHH----HcCCCEEEEECCCCchhHHHHH
Confidence 45444 345666666666653 245677888886 45555543
No 53
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=51.97 E-value=47 Score=24.28 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHhhchhccCCCeEEEEee--hHHHHHHHHHHh
Q 032238 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAH--GNSLRSIIMYLD 81 (144)
Q Consensus 37 ES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH--G~vir~ll~~l~ 81 (144)
.++..+...+...+.+++. ..++.+|+|++| ||.+..++...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~--~~p~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 105 SAYKSLYNQVLPELKSALK--QYPDYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred HHHHHHHHHHHHHHHHHHh--hCCCceEEEEccCHHHHHHHHHHHHH
Confidence 3555666666677776654 257789999999 777777766654
No 54
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=51.87 E-value=12 Score=28.75 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=10.3
Q ss_pred cCCCeEEEEeeh
Q 032238 59 QSGKHVMVAAHG 70 (144)
Q Consensus 59 ~~~~~VLvVsHG 70 (144)
+.|.+||+|||-
T Consensus 187 ~eg~tIl~vtHD 198 (254)
T COG1121 187 QEGKTVLMVTHD 198 (254)
T ss_pred HCCCEEEEEeCC
Confidence 348999999997
No 55
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=51.74 E-value=29 Score=23.44 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=23.9
Q ss_pred CCCeEEEEeehHHHHHHHHHHhCCCccce
Q 032238 60 SGKHVMVAAHGNSLRSIIMYLDKLTSQEV 88 (144)
Q Consensus 60 ~~~~VLvVsHG~vir~ll~~l~~~~~~~~ 88 (144)
.+++|||++=|++-|+++..+.......+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i 39 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEI 39 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEE
Confidence 57899999999999999999986554433
No 56
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=51.62 E-value=29 Score=30.15 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=30.3
Q ss_pred CCCCCC--CCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 28 SYDIPP--PNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 28 ~~~~~~--pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
|++++. ..-|...++..|+...++.+.. ...++.|+||+|.
T Consensus 179 PYDWRls~~~le~rd~YF~rLK~lIE~ay~--~nggkKVVLV~HS 221 (642)
T PLN02517 179 AYDWRLSFQNTEVRDQTLSRLKSNIELMVA--TNGGKKVVVVPHS 221 (642)
T ss_pred ccccccCccchhhhhHHHHHHHHHHHHHHH--HcCCCeEEEEEeC
Confidence 455443 3457788899999999998754 2457899999994
No 57
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=50.58 E-value=33 Score=22.28 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhc
Q 032238 32 PPPNGESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 32 ~~pgGES~~~~~~Rv~~~l~~l~~ 55 (144)
.|--|||+.+|..|....+..++.
T Consensus 11 tP~p~EsLr~Ff~RT~~~W~~~a~ 34 (96)
T PF13422_consen 11 TPKPFESLRDFFARTSEYWQEWAI 34 (96)
T ss_pred CCCCCCcHHHHHHHhHHHHHHHHH
Confidence 445699999999999999988765
No 58
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=50.42 E-value=51 Score=22.35 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhchhccCCCeEEEEee--hHHHHHHHHHHh
Q 032238 40 EMCSKQAVAYFREHIEPQLQSGKHVMVAAH--GNSLRSIIMYLD 81 (144)
Q Consensus 40 ~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH--G~vir~ll~~l~ 81 (144)
..+.+-+...+++... ..+..+|.|++| ||.+..++...+
T Consensus 8 ~~~~~~i~~~~~~~~~--~~p~~~i~v~GHSlGg~lA~l~a~~~ 49 (153)
T cd00741 8 RSLANLVLPLLKSALA--QYPDYKIHVTGHSLGGALAGLAGLDL 49 (153)
T ss_pred HHHHHHHHHHHHHHHH--HCCCCeEEEEEcCHHHHHHHHHHHHH
Confidence 3444445555544432 246788999988 677777766554
No 59
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=50.06 E-value=24 Score=28.50 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEee---hHHHHHHHHHH
Q 032238 28 SYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAH---GNSLRSIIMYL 80 (144)
Q Consensus 28 ~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH---G~vir~ll~~l 80 (144)
|++.+.+.. ...++..++...++++.. .. ++.|+||+| |-+++.++...
T Consensus 89 pYDWR~~~~-~~~~~~~~lk~~ie~~~~--~~-~~kv~li~HSmGgl~~~~fl~~~ 140 (389)
T PF02450_consen 89 PYDWRLSPA-ERDEYFTKLKQLIEEAYK--KN-GKKVVLIAHSMGGLVARYFLQWM 140 (389)
T ss_pred eechhhchh-hHHHHHHHHHHHHHHHHH--hc-CCcEEEEEeCCCchHHHHHHHhc
Confidence 345544333 566888888888888754 23 889999999 34456666554
No 60
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=49.92 E-value=46 Score=24.76 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCCCH--HHHHHHHHHHHHHhhchhccCCCeEEEEeeh--HHHHHHHH
Q 032238 35 NGESL--EMCSKQAVAYFREHIEPQLQSGKHVMVAAHG--NSLRSIIM 78 (144)
Q Consensus 35 gGES~--~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG--~vir~ll~ 78 (144)
||.++ .+..+++.+.+..+. ..+..++||+|| +.+..++.
T Consensus 7 GGs~l~~~~~~~~~~~~i~~l~----~~g~~~viV~sg~g~~~~~ll~ 50 (239)
T cd04246 7 GGTSVADIERIKRVAERIKKAV----KKGYQVVVVVSAMGGTTDELIG 50 (239)
T ss_pred CccccCCHHHHHHHHHHHHHHH----HcCCCEEEEECCCCchHHHHHH
Confidence 44444 245556666665542 245677888885 55555544
No 61
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=48.89 E-value=31 Score=25.93 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=40.3
Q ss_pred CcccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCC----CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 1 MYGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGE----SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 1 ~~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGE----S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
++|..+|++.+|| +.|+...-+ ...--+..+|+ |-.-+..|+...+..+-. .+-+.|++.|-|-
T Consensus 31 e~G~LDgls~~eI-~~~aP~~ge---~vLvTrL~DG~~V~ls~~~v~~~lq~~i~~le~---~G~d~illlCTG~ 98 (221)
T PF07302_consen 31 EAGALDGLSREEI-AALAPEPGE---YVLVTRLRDGTQVVLSKKKVEPRLQACIAQLEA---QGYDVILLLCTGE 98 (221)
T ss_pred EeccCCCCCHHHH-HHhCCCCCC---ceeEEEeCCCCEEEEEHHHHHHHHHHHHHHHHH---CCCCEEEEeccCC
Confidence 4799999999999 555432000 00112345676 667788888888888632 3446777777665
No 62
>PF13479 AAA_24: AAA domain
Probab=48.34 E-value=38 Score=24.74 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHH
Q 032238 36 GESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRS 75 (144)
Q Consensus 36 GES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ 75 (144)
+--+..+..++.++++.++. ..+.+|++++|-..-..
T Consensus 105 ~~~yg~~~~~~~~~i~~l~~---~~~~~VI~tah~~~~~~ 141 (213)
T PF13479_consen 105 GKGYGELQQEFMRFIDKLLN---ALGKNVIFTAHAKEEED 141 (213)
T ss_pred cchHHHHHHHHHHHHHHHHH---HCCCcEEEEEEEEEEEc
Confidence 66788999999999998754 36889999999866554
No 63
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=48.07 E-value=31 Score=25.98 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHH
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSI 76 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~l 76 (144)
+-.+.|...+.++.. ..+.+|++|||--.+...
T Consensus 176 ~t~~~V~~ll~~~~~---~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 176 KTAKEVLELLRELNK---ERGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHHHHHHHHHHHHHH---hcCCEEEEEcCCHHHHHh
Confidence 334445555555532 457899999999776653
No 64
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=48.02 E-value=61 Score=21.71 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=22.9
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHH
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l 80 (144)
.+..-+.++++ ..+...|-||.||..+..+..-.
T Consensus 18 ~~l~Nl~Nll~--~~p~~~IeVV~~g~ai~~l~~~~ 51 (112)
T COG1416 18 MVLGNLTNLLE--DDPSVEIEVVAHGPAIAFLSEKA 51 (112)
T ss_pred HHHHHHHHHhc--CCCCceEEEEEeCchhHHhhhhc
Confidence 33334444443 24667899999999999887744
No 65
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=46.91 E-value=38 Score=23.95 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=35.7
Q ss_pred CCCCCC-CCHHHHH--HHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHH-HHhCCCc
Q 032238 31 IPPPNG-ESLEMCS--KQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIM-YLDKLTS 85 (144)
Q Consensus 31 ~~~pgG-ES~~~~~--~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~-~l~~~~~ 85 (144)
.-.||| -...... .++.+++++.. ..++.|.-||||..+-+-.. .+.|...
T Consensus 70 l~ipGG~~~~~~~~~~~~~~~~v~~~~----~~~k~vaaIC~g~~~L~~ag~ll~g~~~ 124 (188)
T COG0693 70 LVIPGGDHGPEYLRPDPDLLAFVRDFY----ANGKPVAAICHGPAVLAAAGLLLKGRKA 124 (188)
T ss_pred EEECCCccchhhccCcHHHHHHHHHHH----HcCCEEEEEChhHHHHhccccccCCceE
Confidence 346888 5555555 47777777764 35899999999998877666 5555443
No 66
>PRK13695 putative NTPase; Provisional
Probab=45.62 E-value=1e+02 Score=21.44 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCC
Q 032238 40 EMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLT 84 (144)
Q Consensus 40 ~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~ 84 (144)
........+.+..++. .+..+++|+|-..+..+...+.-.+
T Consensus 109 e~~~~~~~~~l~~~~~----~~~~~i~v~h~~~~~~~~~~i~~~~ 149 (174)
T PRK13695 109 ELKSPKFVKAVEEVLD----SEKPVIATLHRRSVHPFVQEIKSRP 149 (174)
T ss_pred hhhhHHHHHHHHHHHh----CCCeEEEEECchhhHHHHHHHhccC
Confidence 3333445566666543 4678999999876666666665544
No 67
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=43.97 E-value=36 Score=20.11 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=14.5
Q ss_pred cccCCCCCHHHHHHHhhHHH
Q 032238 2 YGELQGLNKQETAERYGKEL 21 (144)
Q Consensus 2 ~G~wEG~~~~ei~~~~p~~~ 21 (144)
+|..||++.+++.++...++
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~ 20 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDY 20 (68)
T ss_pred CCcccCCCHHHHHHHHHHHH
Confidence 57889999888876654433
No 68
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=43.49 E-value=28 Score=21.56 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=18.6
Q ss_pred hCCCCCCCCC---CCHHHHHHHHHHHHHHh
Q 032238 27 RSYDIPPPNG---ESLEMCSKQAVAYFREH 53 (144)
Q Consensus 27 ~~~~~~~pgG---ES~~~~~~Rv~~~l~~l 53 (144)
+.+-...++| ||++++..||..++...
T Consensus 13 ~rYl~k~~~g~~~Etpq~~~~RVA~~la~~ 42 (83)
T PF00317_consen 13 DRYLLKDEDGKVIETPQEMFMRVAMALASA 42 (83)
T ss_dssp HHTS-BETTSCB--SHHHHHHHHHHHHHTC
T ss_pred HhhCccCCCcCEeeCHHHHHHHHHHHHHHH
Confidence 3333344455 99999999999999864
No 69
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=43.11 E-value=64 Score=21.39 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHH
Q 032238 36 GESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRS 75 (144)
Q Consensus 36 GES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ 75 (144)
.+...+....+.++++... ..++.|+|-++.|.-|+
T Consensus 57 ~~~~~~~~~~~~~~i~~~~----~~~~~VlVHC~~G~~RS 92 (138)
T smart00195 57 ETKISPYFPEAVEFIEDAE----KKGGKVLVHCQAGVSRS 92 (138)
T ss_pred CCChHHHHHHHHHHHHHHh----cCCCeEEEECCCCCchH
Confidence 4667788889999998874 35788999999886544
No 70
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=42.37 E-value=43 Score=24.20 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+++.+.+.++.. ..+.+|++|||---
T Consensus 176 ~~~l~~~l~~~~~---~~~~tii~~sH~~~ 202 (218)
T cd03255 176 GKEVMELLRELNK---EAGTTIVVVTHDPE 202 (218)
T ss_pred HHHHHHHHHHHHH---hcCCeEEEEECCHH
Confidence 4445555555421 24679999999853
No 71
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=42.22 E-value=27 Score=26.93 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHH
Q 032238 36 GESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLR 74 (144)
Q Consensus 36 GES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir 74 (144)
.|++.+...=+..|++.-.. .++.+|++||.||+.-
T Consensus 8 p~~~~d~~s~~~eFi~~q~s---~~~rrIVlVTSGGTtV 43 (302)
T KOG2728|consen 8 PESLDDPGSLIEEFIKLQAS---LQGRRIVLVTSGGTTV 43 (302)
T ss_pred cccccchhHHHHHHHHHHhh---ccCceEEEEecCCeEe
Confidence 35666665556666665322 3566799999999753
No 72
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.78 E-value=44 Score=24.25 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++.. ..+.+|++|||---
T Consensus 167 ~~~~~~~l~~~~~---~~~~tiii~sH~~~ 193 (220)
T cd03293 167 REQLQEELLDIWR---ETGKTVLLVTHDID 193 (220)
T ss_pred HHHHHHHHHHHHH---HcCCEEEEEecCHH
Confidence 3344444554422 34679999999753
No 73
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=41.23 E-value=1e+02 Score=25.23 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHH
Q 032238 35 NGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 35 gGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l 80 (144)
.|.+..+...++..++++++.+ ..++ +|+-||.+..++...+
T Consensus 69 ~~~tl~~~t~~~i~~~~~vl~~-~kPD---~VlVhGDT~t~lA~al 110 (383)
T COG0381 69 PGQTLGEITGNIIEGLSKVLEE-EKPD---LVLVHGDTNTTLAGAL 110 (383)
T ss_pred cCCCHHHHHHHHHHHHHHHHHh-hCCC---EEEEeCCcchHHHHHH
Confidence 4889999999999999999873 3344 7788999988877543
No 74
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=40.86 E-value=42 Score=29.58 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 39 LEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 39 ~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
-.+...++.+.+.++. ..+..|+|||||++-
T Consensus 27 ~~~~l~~l~~~i~~l~----~~g~~vilVsSGA~a 57 (715)
T TIGR01092 27 ALGRLGSICEQLSELN----SDGREVILVTSGAVA 57 (715)
T ss_pred CHHHHHHHHHHHHHHH----HCCCEEEEEccchHH
Confidence 3456677777777663 347899999998876
No 75
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=40.52 E-value=44 Score=25.59 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehHHHHHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSI 76 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~l 76 (144)
..+++.+.+|.. ..+.+|++|||---=..+
T Consensus 167 ~~lq~~l~~lw~---~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 167 EELQDELLRLWE---ETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred HHHHHHHHHHHH---hhCCEEEEEeCCHHHHHh
Confidence 344455555543 456899999998443333
No 76
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=40.18 E-value=52 Score=24.27 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++.. ..+.+|++|||---
T Consensus 189 ~~~l~~~l~~~~~---~~~~tiiivsH~~~ 215 (236)
T cd03267 189 QENIRNFLKEYNR---ERGTTVLLTSHYMK 215 (236)
T ss_pred HHHHHHHHHHHHh---cCCCEEEEEecCHH
Confidence 3444445554421 23679999999853
No 77
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.86 E-value=47 Score=24.35 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++.. ..+.+|++|||--
T Consensus 172 ~~~l~~~l~~~~~---~~~~tvi~vsH~~ 197 (235)
T cd03261 172 SGVIDDLIRSLKK---ELGLTSIMVTHDL 197 (235)
T ss_pred HHHHHHHHHHHHH---hcCcEEEEEecCH
Confidence 3444444554421 2367999999964
No 78
>PRK09191 two-component response regulator; Provisional
Probab=39.84 E-value=1.2e+02 Score=22.16 Aligned_cols=43 Identities=12% Similarity=-0.031 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHh
Q 032238 36 GESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLD 81 (144)
Q Consensus 36 GES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~ 81 (144)
|-|...+..|+.++.+.+.. .-..+|+||.....++..+...+
T Consensus 115 ~~s~~tV~~~l~ra~~~l~~---~~~~~~liidd~~~~~~~l~~~L 157 (261)
T PRK09191 115 GVDPAEAEALLDDARAEIAR---QVATRVLIIEDEPIIAMDLEQLV 157 (261)
T ss_pred CCCHHHHHHHHHHHHHHHhc---cCCCeEEEEcCcHHHHHHHHHHH
Confidence 46788999999999998843 44568999999988877666555
No 79
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=39.58 E-value=34 Score=23.80 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=15.2
Q ss_pred eEEEEeehHHHHHHHHHH
Q 032238 63 HVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 63 ~VLvVsHG~vir~ll~~l 80 (144)
.|+|+|||..-..++..+
T Consensus 3 ~iii~tHG~~A~~l~~s~ 20 (143)
T COG2893 3 GIIIATHGRFAEGLLNSL 20 (143)
T ss_pred eEEEEeCHHHHHHHHHHH
Confidence 589999999998887754
No 80
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=39.57 E-value=23 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
..+++.+.+.++. ..+.+|++|||-
T Consensus 162 ~~~~~~~~l~~~~----~~~~tili~sH~ 186 (190)
T TIGR01166 162 GREQMLAILRRLR----AEGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHHHHHH----HcCCEEEEEeec
Confidence 3445555555542 236788999984
No 81
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.53 E-value=49 Score=24.38 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+...+.++.. ..+.+|++|||--
T Consensus 172 ~~~l~~~l~~~~~---~~~~tvii~sH~~ 197 (239)
T cd03296 172 RKELRRWLRRLHD---ELHVTTVFVTHDQ 197 (239)
T ss_pred HHHHHHHHHHHHH---HcCCEEEEEeCCH
Confidence 3444455555422 2367999999984
No 82
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.52 E-value=50 Score=23.77 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
...++.+.+.++.. ..+.+|+++||--
T Consensus 165 ~~~~l~~~l~~~~~---~~~~tii~~sH~~ 191 (213)
T cd03259 165 LREELREELKELQR---ELGITTIYVTHDQ 191 (213)
T ss_pred HHHHHHHHHHHHHH---HcCCEEEEEecCH
Confidence 34555555555422 2367999999974
No 83
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=39.44 E-value=1.2e+02 Score=21.47 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=15.4
Q ss_pred cCCCeEEEEeehHHHHHHHH
Q 032238 59 QSGKHVMVAAHGNSLRSIIM 78 (144)
Q Consensus 59 ~~~~~VLvVsHG~vir~ll~ 78 (144)
..+++|||++||-.|-.=+.
T Consensus 55 ~~~~~vLVLGTgEfMy~Pl~ 74 (155)
T PF12500_consen 55 RPGERVLVLGTGEFMYLPLL 74 (155)
T ss_pred cCCCcEEEEccchHHHHHHH
Confidence 36789999999998854333
No 84
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=39.37 E-value=60 Score=23.18 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
...+.+.+.+.++.. ..+.+|++|||--
T Consensus 105 ~~~~~l~~~l~~~~~---~~~~tiiivsH~~ 132 (177)
T cd03222 105 EQRLNAARAIRRLSE---EGKKTALVVEHDL 132 (177)
T ss_pred HHHHHHHHHHHHHHH---cCCCEEEEEECCH
Confidence 444566666666532 2347999999974
No 85
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.31 E-value=55 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
..+++...+.++.. ..+.+|++|||--
T Consensus 135 ~~~~l~~~l~~~~~---~~~~tiii~sH~~ 161 (178)
T cd03229 135 TRREVRALLKSLQA---QLGITVVLVTHDL 161 (178)
T ss_pred HHHHHHHHHHHHHH---hcCCEEEEEeCCH
Confidence 34455566665522 2367999999974
No 86
>PLN02162 triacylglycerol lipase
Probab=39.22 E-value=83 Score=26.47 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEee--hHHHHHHHHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAH--GNSLRSIIMY 79 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsH--G~vir~ll~~ 79 (144)
..+.+.+++++. .+++.++.|++| ||++..+...
T Consensus 262 ~~I~~~L~~lL~--k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 262 YTIRQMLRDKLA--RNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHH--hCCCceEEEEecChHHHHHHHHHH
Confidence 445566666554 256778999999 9999988754
No 87
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=38.97 E-value=22 Score=24.56 Aligned_cols=20 Identities=10% Similarity=-0.071 Sum_probs=14.1
Q ss_pred EEEeehHHHHHHHHHHhCCC
Q 032238 65 MVAAHGNSLRSIIMYLDKLT 84 (144)
Q Consensus 65 LvVsHG~vir~ll~~l~~~~ 84 (144)
|||||||...+.-....|.|
T Consensus 75 lvIs~aG~~Ti~E~l~~g~P 94 (167)
T PF04101_consen 75 LVISHAGAGTIAEALALGKP 94 (167)
T ss_dssp EEEECS-CHHHHHHHHCT--
T ss_pred EEEeCCCccHHHHHHHcCCC
Confidence 99999998877777677765
No 88
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=38.92 E-value=26 Score=25.02 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
..+++.+.+.++. ..+.+|++|||---
T Consensus 124 ~~~~l~~~l~~~~----~~g~tvIivSH~~~ 150 (176)
T cd03238 124 DINQLLEVIKGLI----DLGNTVILIEHNLD 150 (176)
T ss_pred HHHHHHHHHHHHH----hCCCEEEEEeCCHH
Confidence 3444455555542 24789999999864
No 89
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=38.73 E-value=52 Score=24.68 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
...+...+.++.. ..+.+|++|||--.
T Consensus 151 ~~~l~~~l~~~~~---~~~~tiiivsHd~~ 177 (246)
T cd03237 151 RLMASKVIRRFAE---NNEKTAFVVEHDII 177 (246)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 3444555555432 34689999999854
No 90
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=38.40 E-value=51 Score=24.26 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++.. ..+.+|++|||--
T Consensus 181 ~~~l~~~l~~~~~---~~~~tiii~tH~~ 206 (243)
T TIGR02315 181 SKQVMDYLKRINK---EDGITVIINLHQV 206 (243)
T ss_pred HHHHHHHHHHHHH---HcCCEEEEEeCCH
Confidence 3444445554422 2367899999963
No 91
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=38.14 E-value=31 Score=21.10 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHH
Q 032238 35 NGESLEMCSKQAVA 48 (144)
Q Consensus 35 gGES~~~~~~Rv~~ 48 (144)
++|||.+|..|+..
T Consensus 20 ~~eSFSdvI~rli~ 33 (71)
T PF02697_consen 20 EDESFSDVIERLIE 33 (71)
T ss_pred CCCCHHHHHHHHHh
Confidence 79999999999977
No 92
>PLN00413 triacylglycerol lipase
Probab=37.90 E-value=1.1e+02 Score=25.76 Aligned_cols=34 Identities=12% Similarity=0.273 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEee--hHHHHHHHHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAH--GNSLRSIIMY 79 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsH--G~vir~ll~~ 79 (144)
..+.+.+++++. .+++.+|.|++| ||.+..+...
T Consensus 268 y~i~~~Lk~ll~--~~p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 268 YTILRHLKEIFD--QNPTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHH--HCCCCeEEEEecCHHHHHHHHHHH
Confidence 345566666654 366778999999 9999888764
No 93
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.61 E-value=53 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+.+.+.+.++.. ..+.+|+++||--
T Consensus 177 ~~l~~~l~~~~~---~~~~tvii~sH~~ 201 (233)
T cd03258 177 QSILALLRDINR---ELGLTIVLITHEM 201 (233)
T ss_pred HHHHHHHHHHHH---HcCCEEEEEeCCH
Confidence 344444544421 2367999999973
No 94
>PLN02324 triacylglycerol lipase
Probab=37.55 E-value=90 Score=25.79 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhchhccCC--CeEEEEee--hHHHHHHHHH
Q 032238 41 MCSKQAVAYFREHIEPQLQSG--KHVMVAAH--GNSLRSIIMY 79 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~--~~VLvVsH--G~vir~ll~~ 79 (144)
.+.+.+...+.+++. .+++ .+|.|+.| ||+|..|.+.
T Consensus 194 SareqVl~eV~~L~~--~Yp~e~~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 194 SAQEQVQGELKRLLE--LYKNEEISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred HHHHHHHHHHHHHHH--HCCCCCceEEEecCcHHHHHHHHHHH
Confidence 577778888888876 2443 47999999 8888887764
No 95
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=36.79 E-value=56 Score=24.60 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+...+.++.. ..+.+|++|||---
T Consensus 186 ~~~l~~~l~~~~~---~~g~tiiivsH~~~ 212 (265)
T TIGR02769 186 QAVILELLRKLQQ---AFGTAYLFITHDLR 212 (265)
T ss_pred HHHHHHHHHHHHH---hcCcEEEEEeCCHH
Confidence 3445555555432 23679999999743
No 96
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.78 E-value=58 Score=23.86 Aligned_cols=12 Identities=33% Similarity=0.456 Sum_probs=9.6
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 194 ~~~tii~~tH~~ 205 (241)
T cd03256 194 EGITVIVSLHQV 205 (241)
T ss_pred cCCEEEEEeCCH
Confidence 367999999963
No 97
>PLN02408 phospholipase A1
Probab=36.68 E-value=1e+02 Score=25.04 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhchhccCC--CeEEEEee--hHHHHHHHHHHh
Q 032238 41 MCSKQAVAYFREHIEPQLQSG--KHVMVAAH--GNSLRSIIMYLD 81 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~--~~VLvVsH--G~vir~ll~~l~ 81 (144)
.+.+.+...+.++++. +++ .+|.|+.| ||++..|.+..+
T Consensus 179 s~r~qVl~eI~~ll~~--y~~~~~sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 179 SLQEMVREEIARLLQS--YGDEPLSLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred hHHHHHHHHHHHHHHh--cCCCCceEEEeccchHHHHHHHHHHHH
Confidence 4566777777777652 333 36999999 888888777544
No 98
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=36.63 E-value=31 Score=24.15 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=9.7
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 145 ~~~tii~~sh~~ 156 (173)
T cd03246 145 AGATRIVIAHRP 156 (173)
T ss_pred CCCEEEEEeCCH
Confidence 367899999975
No 99
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=36.37 E-value=42 Score=22.78 Aligned_cols=18 Identities=6% Similarity=0.250 Sum_probs=12.1
Q ss_pred eEEEEeeh-HHHHHHHHHH
Q 032238 63 HVMVAAHG-NSLRSIIMYL 80 (144)
Q Consensus 63 ~VLvVsHG-~vir~ll~~l 80 (144)
.|+||||| ..-..++..+
T Consensus 3 GIVlVSHs~~lA~gl~~~~ 21 (124)
T PRK14484 3 GIVIVSHSKKIAEGVKDLI 21 (124)
T ss_pred eEEEEeCcHHHHHHHHHHH
Confidence 48999999 5555554443
No 100
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=36.33 E-value=85 Score=23.27 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhchh---ccCCCeEEEEee--hHHH-HHHH
Q 032238 34 PNGESLEMCSKQAVAYFREHIEPQ---LQSGKHVMVAAH--GNSL-RSII 77 (144)
Q Consensus 34 pgGES~~~~~~Rv~~~l~~l~~~~---~~~~~~VLvVsH--G~vi-r~ll 77 (144)
-.|..+.+-.+-+..+++.|.+.. ..+.+.|++|+| ||++ |.++
T Consensus 54 ~~g~~l~~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l 103 (225)
T PF07819_consen 54 FHGRTLQRQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSAL 103 (225)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHH
Confidence 356777766666777777765411 236789999999 4544 4444
No 101
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=36.29 E-value=96 Score=20.43 Aligned_cols=42 Identities=24% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeeh--HHHHHHHH
Q 032238 32 PPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHG--NSLRSIIM 78 (144)
Q Consensus 32 ~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG--~vir~ll~ 78 (144)
..+.+.+..++.+++.+.++++ ..++.|+|.+-= |+......
T Consensus 33 ~~~~~~~~~~~~~~i~~~i~~~-----~~~~~viil~Dl~GGSp~n~~~ 76 (122)
T cd00006 33 DFPPGESPDDLLEKIKAALAEL-----DSGEGVLILTDLFGGSPNNAAA 76 (122)
T ss_pred EeCCCCCHHHHHHHHHHHHHHh-----CCCCcEEEEEeCCCCCHHHHHH
Confidence 3456789999999999999886 234567877763 44433333
No 102
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=36.28 E-value=61 Score=23.44 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=9.7
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 191 ~~~tii~~tH~~ 202 (221)
T TIGR02211 191 LNTSFLVVTHDL 202 (221)
T ss_pred cCCEEEEEeCCH
Confidence 367899999974
No 103
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=36.16 E-value=58 Score=23.59 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++.. ..+.+|+++||--
T Consensus 181 ~~~l~~~l~~~~~---~~~~tii~~sH~~ 206 (228)
T cd03257 181 QAQILDLLKKLQE---ELGLTLLFITHDL 206 (228)
T ss_pred HHHHHHHHHHHHH---HcCCEEEEEeCCH
Confidence 4445555555421 2367999999974
No 104
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=36.14 E-value=58 Score=24.59 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++.. ..+.+|++|||--
T Consensus 179 ~~~l~~~l~~~~~---~~g~tiiivsH~~ 204 (269)
T PRK11831 179 MGVLVKLISELNS---ALGVTCVVVSHDV 204 (269)
T ss_pred HHHHHHHHHHHHH---hcCcEEEEEecCH
Confidence 4445555555422 2367999999973
No 105
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=36.10 E-value=38 Score=23.04 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=30.9
Q ss_pred CCCCCCCC-HHHHH---HHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHH
Q 032238 31 IPPPNGES-LEMCS---KQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 31 ~~~pgGES-~~~~~---~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l 80 (144)
.-.|||.. ...+. +++..++++.. ..++-|..++||..+-+-...+
T Consensus 41 lilpGG~~~~~~l~~~~~~l~~~~~~~~----~~~k~iaaIC~g~~~L~~~gll 90 (147)
T PF01965_consen 41 LILPGGHGGADDLRTDSKDLLELLKEFY----EAGKPIAAICHGPAVLAAAGLL 90 (147)
T ss_dssp EEEE-BTHHHHHHTTCHHHHHHHHHHHH----HTT-EEEEETTCHHHHHHTTTT
T ss_pred EEECCCCchhhhHhhHHHHHHHHHHHHH----HcCCeEEecCCCcchhhccCcc
Confidence 44689977 67776 68888888864 3488999999998544433333
No 106
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.01 E-value=60 Score=24.83 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=15.5
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
++...+.++.. ..+.+||+|||---
T Consensus 183 ~l~~~l~~l~~---~~g~tvl~vtH~~~ 207 (286)
T PRK13646 183 QVMRLLKSLQT---DENKTIILVSHDMN 207 (286)
T ss_pred HHHHHHHHHHH---hCCCEEEEEecCHH
Confidence 34444444421 34789999999854
No 107
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.99 E-value=61 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++.. ..+.+|+++||---
T Consensus 167 ~~~l~~~l~~~~~---~~~~tiii~sH~~~ 193 (214)
T cd03297 167 RLQLLPELKQIKK---NLNIPVIFVTHDLS 193 (214)
T ss_pred HHHHHHHHHHHHH---HcCcEEEEEecCHH
Confidence 3444444544422 23678999999854
No 108
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=35.92 E-value=62 Score=23.24 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=9.9
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|+++||--
T Consensus 180 ~~~tvi~~sH~~ 191 (213)
T cd03301 180 LGTTTIYVTHDQ 191 (213)
T ss_pred cCCEEEEEeCCH
Confidence 367999999974
No 109
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=35.79 E-value=32 Score=22.65 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHH
Q 032238 35 NGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRS 75 (144)
Q Consensus 35 gGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ 75 (144)
..++..+...++..+++... ..+++|||-+++|.-|+
T Consensus 51 ~~~~~~~~~~~~~~~i~~~~----~~~~~VlVHC~~G~~RS 87 (133)
T PF00782_consen 51 PEEPILEHLDQAVEFIENAI----SEGGKVLVHCKAGLSRS 87 (133)
T ss_dssp TTSHGGGGHHHHHHHHHHHH----HTTSEEEEEESSSSSHH
T ss_pred CCcchHHHHHHHHHhhhhhh----cccceeEEEeCCCcccc
Confidence 45667777888888888763 35789999999877554
No 110
>PTZ00489 glutamate 5-kinase; Provisional
Probab=35.79 E-value=69 Score=24.57 Aligned_cols=32 Identities=6% Similarity=0.062 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHH
Q 032238 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLR 74 (144)
Q Consensus 38 S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir 74 (144)
........+.+.+.++. .+..|++||||++-+
T Consensus 26 ~~~~~~~~l~~~i~~l~-----~~~~vilVssGava~ 57 (264)
T PTZ00489 26 IAAHRIEALCRFIADLQ-----TKYEVILVTSGAVAA 57 (264)
T ss_pred cCHHHHHHHHHHHHHHh-----cCCeEEEEecChHhc
Confidence 34466667777777762 246799999998664
No 111
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.61 E-value=60 Score=23.95 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+..+++.+.+.++.. ..+.+|++|||--
T Consensus 169 ~~~~~l~~~L~~~~~---~~g~tvii~sH~~ 196 (242)
T cd03295 169 ITRDQLQEEFKRLQQ---ELGKTIVFVTHDI 196 (242)
T ss_pred HHHHHHHHHHHHHHH---HcCCEEEEEecCH
Confidence 334555566665532 2367899999974
No 112
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.58 E-value=64 Score=22.50 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
..+++.+.+.++. ..+.+|+++||--
T Consensus 130 ~~~~l~~~l~~~~----~~g~tiii~th~~ 155 (173)
T cd03230 130 SRREFWELLRELK----KEGKTILLSSHIL 155 (173)
T ss_pred HHHHHHHHHHHHH----HCCCEEEEECCCH
Confidence 3445555555552 2367899999974
No 113
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=35.54 E-value=28 Score=25.09 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=9.6
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 186 ~~~tii~~tH~~ 197 (214)
T TIGR02673 186 RGTTVIVATHDL 197 (214)
T ss_pred cCCEEEEEeCCH
Confidence 367999999974
No 114
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=35.39 E-value=61 Score=24.31 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
....+.+.+.++.. ..+.+|++|||--
T Consensus 163 ~~~~l~~~L~~~~~---~~g~tviivsH~~ 189 (255)
T PRK11248 163 TREQMQTLLLKLWQ---ETGKQVLLITHDI 189 (255)
T ss_pred HHHHHHHHHHHHHH---hcCCEEEEEeCCH
Confidence 34445555555422 2467999999974
No 115
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=35.28 E-value=30 Score=24.77 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=8.7
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 176 ~~~tiii~sh~~ 187 (200)
T PRK13540 176 KGGAVLLTSHQD 187 (200)
T ss_pred cCCEEEEEeCCc
Confidence 366888888863
No 116
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=35.12 E-value=68 Score=22.98 Aligned_cols=24 Identities=13% Similarity=0.403 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+.+.+.+.++. ..+.+|++|||--
T Consensus 171 ~~~~~~l~~~~----~~~~tvi~~sH~~ 194 (211)
T cd03225 171 RELLELLKKLK----AEGKTIIIVTHDL 194 (211)
T ss_pred HHHHHHHHHHH----HcCCEEEEEeCCH
Confidence 34444444442 2367899999974
No 117
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=35.06 E-value=65 Score=23.64 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=9.8
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 164 ~~~tii~~sH~~ 175 (230)
T TIGR01184 164 HRVTVLMVTHDV 175 (230)
T ss_pred cCCEEEEEeCCH
Confidence 367999999974
No 118
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=34.86 E-value=67 Score=23.39 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+...+.++.. ..+.+|+++||---
T Consensus 182 ~~~l~~~l~~~~~---~~~~tii~~sH~~~ 208 (228)
T PRK10584 182 GDKIADLLFSLNR---EHGTTLILVTHDLQ 208 (228)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEecCHH
Confidence 4445555555422 23679999999854
No 119
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=34.86 E-value=1.1e+02 Score=22.29 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHhhchhccCC-CeEEEEee---hHHHHHHHHHHhC
Q 032238 37 ESLEMCSKQAVAYFREHIEPQLQSG-KHVMVAAH---GNSLRSIIMYLDK 82 (144)
Q Consensus 37 ES~~~~~~Rv~~~l~~l~~~~~~~~-~~VLvVsH---G~vir~ll~~l~~ 82 (144)
..+....+|+...+.+.+.. .... ..|.+|+| |-++|.++..+..
T Consensus 53 ~gI~~~g~rL~~eI~~~~~~-~~~~~~~IsfIgHSLGGli~r~al~~~~~ 101 (217)
T PF05057_consen 53 DGIDVCGERLAEEILEHIKD-YESKIRKISFIGHSLGGLIARYALGLLHD 101 (217)
T ss_pred hhhHHHHHHHHHHHHHhccc-cccccccceEEEecccHHHHHHHHHHhhh
Confidence 45677788888888777652 1222 47999999 4555777776654
No 120
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=34.68 E-value=66 Score=23.54 Aligned_cols=26 Identities=4% Similarity=0.184 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
+++.+.+.++.. ..+.+|++|||---
T Consensus 166 ~~~~~~l~~~~~---~~~~tiii~sH~~~ 191 (232)
T PRK10771 166 QEMLTLVSQVCQ---ERQLTLLMVSHSLE 191 (232)
T ss_pred HHHHHHHHHHHH---hcCCEEEEEECCHH
Confidence 344455555422 23678999999854
No 121
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.56 E-value=68 Score=23.71 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+...+.++.. ..+.+|++|||--
T Consensus 167 ~~~l~~~l~~~~~---~~g~tii~~sH~~ 192 (241)
T PRK14250 167 TEIIEELIVKLKN---KMNLTVIWITHNM 192 (241)
T ss_pred HHHHHHHHHHHHH---hCCCEEEEEeccH
Confidence 4455555555422 2367999999974
No 122
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=34.54 E-value=68 Score=23.50 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=9.8
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 195 ~g~tvii~sH~~ 206 (233)
T PRK11629 195 QGTAFLVVTHDL 206 (233)
T ss_pred CCCEEEEEeCCH
Confidence 467999999974
No 123
>COG1647 Esterase/lipase [General function prediction only]
Probab=34.52 E-value=1.2e+02 Score=23.17 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHh
Q 032238 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLD 81 (144)
Q Consensus 38 S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~ 81 (144)
++.+.++||.++.+.+.+ ..++.=.|+=+|=||++...++.-.
T Consensus 64 ~~~DW~~~v~d~Y~~L~~-~gy~eI~v~GlSmGGv~alkla~~~ 106 (243)
T COG1647 64 TPRDWWEDVEDGYRDLKE-AGYDEIAVVGLSMGGVFALKLAYHY 106 (243)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCCeEEEEeecchhHHHHHHHhhC
Confidence 678889999999999864 1233334566789999998888643
No 124
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=34.33 E-value=1.5e+02 Score=20.68 Aligned_cols=46 Identities=13% Similarity=0.087 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHH-HHHHHHHhCCCc
Q 032238 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSL-RSIIMYLDKLTS 85 (144)
Q Consensus 38 S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi-r~ll~~l~~~~~ 85 (144)
|+.++.+++.....++.. ......|+.|.-||.+ ...++..++++.
T Consensus 11 s~~~i~~~i~~la~~I~~--~~~~d~vvgv~~GG~~fa~~L~~~L~~~~ 57 (156)
T PRK09177 11 SWDQLHRDARALAWRLLP--AGQWKGIIAVTRGGLVPAAILARELGIRL 57 (156)
T ss_pred CHHHHHHHHHHHHHHHHh--hCCCCEEEEEecCCeehHHHHHHHcCCCc
Confidence 788899999888888743 1224688999999984 667777777763
No 125
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=34.09 E-value=1.3e+02 Score=20.89 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=27.2
Q ss_pred HHHHHhhHHHHHhhhhCCCCCCCCCC-CHHHHHHHHHHHHH
Q 032238 12 ETAERYGKELVHGWRRSYDIPPPNGE-SLEMCSKQAVAYFR 51 (144)
Q Consensus 12 ei~~~~p~~~~~~~~~~~~~~~pgGE-S~~~~~~Rv~~~l~ 51 (144)
.+..+-|......|.+.++..+|... |..+|..||.+...
T Consensus 50 ~~aaqLP~~ir~~~~~~p~~~~~~~~~s~~dFl~Rv~~~~g 90 (135)
T COG5502 50 DFAAQLPMEIRDILVDGPDLGPPKLPFSLDDFLTRVANKFG 90 (135)
T ss_pred HHHHhCCHHHHHHHhcCCcCCCCCCcccHHHHHHHHHHccC
Confidence 44456676667788876555555543 88899999887553
No 126
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=34.06 E-value=36 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehHHHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGNSLR 74 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir 74 (144)
..+.+++.+.. ..++-|..||||..+-
T Consensus 115 ~~v~~lv~~f~----~~gK~vaAIChgp~iL 141 (217)
T PRK11780 115 PDVKALVRAFH----QAGKPIGFICIAPAML 141 (217)
T ss_pred HHHHHHHHHHH----HCCCEEEEECHHHHHH
Confidence 34555555543 4678999999998653
No 127
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=33.96 E-value=67 Score=23.84 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++.. ..+.+|++|||--
T Consensus 184 ~~~l~~~l~~~~~---~~~~tii~vsH~~ 209 (253)
T TIGR02323 184 QARLLDLLRGLVR---DLGLAVIIVTHDL 209 (253)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEeCCH
Confidence 4445555555422 2367999999974
No 128
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.90 E-value=72 Score=23.10 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+.+.+.+.++.. ..+.+|+++||-.
T Consensus 168 ~~l~~~l~~~~~---~~~~tvi~~tH~~ 192 (220)
T cd03265 168 AHVWEYIEKLKE---EFGMTILLTTHYM 192 (220)
T ss_pred HHHHHHHHHHHH---hcCCEEEEEeCCH
Confidence 344444444422 2367899999963
No 129
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=33.89 E-value=30 Score=25.02 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=9.4
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 187 ~~~tii~vsH~~ 198 (216)
T TIGR00960 187 RGTTVLVATHDI 198 (216)
T ss_pred CCCEEEEEeCCH
Confidence 367899999974
No 130
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.51 E-value=61 Score=24.43 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+.+...+.++.. ..+.+|++|||-.
T Consensus 175 ~~l~~~l~~L~~---~~~~tii~~tHd~ 199 (235)
T COG1122 175 RELLELLKKLKE---EGGKTIIIVTHDL 199 (235)
T ss_pred HHHHHHHHHHHh---cCCCeEEEEeCcH
Confidence 344555555532 3467999999973
No 131
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=33.47 E-value=69 Score=23.97 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=10.2
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|+++||---
T Consensus 202 ~g~tvii~tH~~~ 214 (262)
T PRK09984 202 DGITVVVTLHQVD 214 (262)
T ss_pred cCCEEEEEeCCHH
Confidence 3678999999864
No 132
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=33.36 E-value=72 Score=23.28 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++.. ..+.+|+++||--
T Consensus 173 ~~~l~~~l~~~~~---~~~~tvii~sh~~ 198 (225)
T PRK10247 173 KHNVNEIIHRYVR---EQNIAVLWVTHDK 198 (225)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEECCh
Confidence 4455555555432 2367899999984
No 133
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.29 E-value=66 Score=29.04 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=34.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhchhccC--------CCeEEEEee--hHHH-HHHH
Q 032238 29 YDIPPPNGESLEMCSKQAVAYFREHIEPQLQS--------GKHVMVAAH--GNSL-RSII 77 (144)
Q Consensus 29 ~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~--------~~~VLvVsH--G~vi-r~ll 77 (144)
.++..-.|+++.+-.+=|..|+..|+. .... .++|++|+| ||.+ |+.+
T Consensus 142 Ee~tAm~G~~l~dQtEYV~dAIk~ILs-lYr~~~e~~~p~P~sVILVGHSMGGiVAra~~ 200 (973)
T KOG3724|consen 142 EEFTAMHGHILLDQTEYVNDAIKYILS-LYRGEREYASPLPHSVILVGHSMGGIVARATL 200 (973)
T ss_pred chhhhhccHhHHHHHHHHHHHHHHHHH-HhhcccccCCCCCceEEEEeccchhHHHHHHH
Confidence 345566899999999999999998865 2111 357999999 5555 4443
No 134
>PLN02847 triacylglycerol lipase
Probab=33.11 E-value=1.1e+02 Score=26.57 Aligned_cols=43 Identities=9% Similarity=0.258 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHhhchhccCCCeEEEEee--hHHHHHHHHHHhC
Q 032238 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAH--GNSLRSIIMYLDK 82 (144)
Q Consensus 38 S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH--G~vir~ll~~l~~ 82 (144)
+..-+.+.+.+.|.+++. .+++=+|+|++| ||.+.+++..++.
T Consensus 229 AArwI~~~i~~~L~kal~--~~PdYkLVITGHSLGGGVAALLAilLR 273 (633)
T PLN02847 229 AARWIAKLSTPCLLKALD--EYPDFKIKIVGHSLGGGTAALLTYILR 273 (633)
T ss_pred HHHHHHHHHHHHHHHHHH--HCCCCeEEEeccChHHHHHHHHHHHHh
Confidence 444556666666666654 367778999999 7888888887763
No 135
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=32.84 E-value=22 Score=27.78 Aligned_cols=16 Identities=44% Similarity=0.542 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHhhhhc
Q 032238 128 TLALYRQELDEMSQRT 143 (144)
Q Consensus 128 ~~~~~~~~~~~~~~~~ 143 (144)
.||.|||+|.|-+.+.
T Consensus 33 KlAkyR~qLlep~~~s 48 (364)
T KOG1486|consen 33 KLAKYRQQLLEPTKGS 48 (364)
T ss_pred HHHHHHHHhCCCCCCC
Confidence 5899999998865543
No 136
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=32.80 E-value=33 Score=26.40 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 35 NGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 35 gGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
|-++..+=.+++..+|...+.. ...++-+++++||.-
T Consensus 116 g~~~~~~D~~~va~aL~~~~~~-~~~~~a~vlmGHGt~ 152 (262)
T PF06180_consen 116 GQENSPEDYEAVAEALAEEFPK-KRKDEAVVLMGHGTP 152 (262)
T ss_dssp ----SHHHHHHHHHHHHCCS-T-T-TTEEEEEEE---S
T ss_pred cccCChHHHHHHHHHHHHhccc-cCCCCEEEEEeCCCC
Confidence 3344556667888888776542 246788999999964
No 137
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=32.61 E-value=52 Score=22.26 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=12.4
Q ss_pred eEEEEeehH-HHHHHHHHH
Q 032238 63 HVMVAAHGN-SLRSIIMYL 80 (144)
Q Consensus 63 ~VLvVsHG~-vir~ll~~l 80 (144)
.|+|||||. .-+.+...+
T Consensus 2 gIvivSHs~~lA~Gi~~~~ 20 (125)
T TIGR02364 2 GIVLVSHSKKIAEGIKELI 20 (125)
T ss_pred cEEEEeCCHHHHHHHHHHH
Confidence 489999995 555555443
No 138
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=32.41 E-value=75 Score=23.90 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=14.5
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
++.+.+.++.. ..+.+|+++||--
T Consensus 185 ~~~~~l~~l~~---~~~~tiii~sH~~ 208 (265)
T PRK10575 185 DVLALVHRLSQ---ERGLTVIAVLHDI 208 (265)
T ss_pred HHHHHHHHHHH---hcCCEEEEEeCCH
Confidence 34444544421 2367899999974
No 139
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=32.34 E-value=33 Score=24.58 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++. ..+.+|++|||--
T Consensus 162 ~~~l~~~l~~~~----~~~~tii~~sH~~ 186 (205)
T cd03226 162 MERVGELIRELA----AQGKAVIVITHDY 186 (205)
T ss_pred HHHHHHHHHHHH----HCCCEEEEEeCCH
Confidence 444555555542 2467899999974
No 140
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=32.27 E-value=79 Score=22.80 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=10.1
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|++|||---
T Consensus 178 ~~~tii~vsh~~~ 190 (213)
T TIGR01277 178 RQRTLLMVTHHLS 190 (213)
T ss_pred cCCEEEEEeCCHH
Confidence 3678999999853
No 141
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=32.24 E-value=1.1e+02 Score=21.68 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=16.1
Q ss_pred CCeEEEEeehHHHHHHHHHH
Q 032238 61 GKHVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 61 ~~~VLvVsHG~vir~ll~~l 80 (144)
.+.+++|+|+.=.-+++.++
T Consensus 54 ~~~~ilVaHSLGc~~~l~~l 73 (171)
T PF06821_consen 54 DEPTILVAHSLGCLTALRWL 73 (171)
T ss_dssp TTTEEEEEETHHHHHHHHHH
T ss_pred CCCeEEEEeCHHHHHHHHHH
Confidence 45699999998777777777
No 142
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=32.22 E-value=32 Score=24.74 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+++...+.++. ..+.+|++|||--
T Consensus 172 ~~~~~~~l~~~~----~~~~tiiivtH~~ 196 (214)
T cd03292 172 TWEIMNLLKKIN----KAGTTVVVATHAK 196 (214)
T ss_pred HHHHHHHHHHHH----HcCCEEEEEeCCH
Confidence 344455555542 2367899999974
No 143
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=32.12 E-value=74 Score=24.23 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+++.+.+.++.. ..+.+|++|||--
T Consensus 191 ~~l~~~l~~~~~---~~~~tviiisH~~ 215 (272)
T PRK13547 191 HRLLDTVRRLAR---DWNLGVLAIVHDP 215 (272)
T ss_pred HHHHHHHHHHHH---hcCCEEEEEECCH
Confidence 344444444421 2367999999963
No 144
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=32.11 E-value=48 Score=22.09 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=14.1
Q ss_pred CeEEEEeehHHHHHHHHH
Q 032238 62 KHVMVAAHGNSLRSIIMY 79 (144)
Q Consensus 62 ~~VLvVsHG~vir~ll~~ 79 (144)
++||+|++|.+.|.-++.
T Consensus 1 ~~vlfvC~~N~cRS~mAE 18 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAE 18 (126)
T ss_pred CeEEEEcCCcHHHHHHHH
Confidence 368999999998876653
No 145
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=32.05 E-value=76 Score=23.65 Aligned_cols=24 Identities=4% Similarity=0.256 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
+.+.+.+.++.. ..+.+|++|||-
T Consensus 177 ~~l~~~L~~~~~---~~g~til~~sH~ 200 (254)
T PRK10418 177 ARILDLLESIVQ---KRALGMLLVTHD 200 (254)
T ss_pred HHHHHHHHHHHH---hcCcEEEEEecC
Confidence 334444544422 236789999995
No 146
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=31.95 E-value=33 Score=23.80 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
+..+.+...+.++. ..+.+|+++||---
T Consensus 116 ~~~~~l~~~l~~~~----~~~~tiii~sh~~~ 143 (163)
T cd03216 116 AEVERLFKVIRRLR----AQGVAVIFISHRLD 143 (163)
T ss_pred HHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 44456666666652 23679999999854
No 147
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.86 E-value=78 Score=24.10 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++.. ..+.+|++|||---
T Consensus 176 ~~~l~~~l~~l~~---~~g~tilivtH~~~ 202 (279)
T PRK13650 176 RLELIKTIKGIRD---DYQMTVISITHDLD 202 (279)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEecCHH
Confidence 3344445555421 24789999999843
No 148
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.73 E-value=79 Score=23.17 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=10.3
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|+++||---
T Consensus 180 ~~~tiii~sh~~~ 192 (232)
T cd03300 180 LGITFVFVTHDQE 192 (232)
T ss_pred cCCEEEEEeCCHH
Confidence 3679999999853
No 149
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=31.70 E-value=73 Score=24.00 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++.. ..+.+|++|||--
T Consensus 185 ~~~l~~~l~~~~~---~~g~tviivsH~~ 210 (267)
T PRK15112 185 RSQLINLMLELQE---KQGISYIYVTQHL 210 (267)
T ss_pred HHHHHHHHHHHHH---HcCcEEEEEeCCH
Confidence 4445555555422 2367899999974
No 150
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=31.66 E-value=1.3e+02 Score=22.83 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=27.3
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCC
Q 032238 30 DIPPPNG-ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLT 84 (144)
Q Consensus 30 ~~~~pgG-ES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~ 84 (144)
++..|+- =|..+|.+.+..+++++.. .|+.-+|| ||+--.+-+.+.|++
T Consensus 28 d~~~p~e~ysv~~f~~~a~~~i~~i~~----rgk~PIlv--GGTglYi~all~g~~ 77 (253)
T PF01715_consen 28 DILDPDEEYSVGDFQRDAREAIEDILA----RGKIPILV--GGTGLYIQALLNGLA 77 (253)
T ss_dssp S-B-TTS---HHHHHHHHHHHHHHHHH----TT-EEEEE--ES-HHHHHHHHCTS-
T ss_pred eeecccCCCCHHHHHHHHHHHHHHHHh----cCCeEEEE--CChHHHHHHHHhChh
Confidence 3444542 2788999999999999854 35544444 555555555555543
No 151
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=31.64 E-value=40 Score=24.05 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=7.4
Q ss_pred CCCeEEEEeeh
Q 032238 60 SGKHVMVAAHG 70 (144)
Q Consensus 60 ~~~~VLvVsHG 70 (144)
.+.+|++|||-
T Consensus 172 ~~~tiii~sh~ 182 (195)
T PRK13541 172 SGGIVLLSSHL 182 (195)
T ss_pred CCCEEEEEeCC
Confidence 35677777775
No 152
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=31.60 E-value=32 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
.+.+.+.+.++. ..+.+|++|||-
T Consensus 161 ~~~l~~~l~~~~----~~g~tiii~sH~ 184 (201)
T cd03231 161 VARFAEAMAGHC----ARGGMVVLTTHQ 184 (201)
T ss_pred HHHHHHHHHHHH----hCCCEEEEEecC
Confidence 334444444432 236688888885
No 153
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.57 E-value=78 Score=24.24 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
...++...+.++.. ..+.+|++|||--
T Consensus 179 ~~~~l~~~l~~l~~---~~g~tvi~vtHd~ 205 (287)
T PRK13637 179 GRDEILNKIKELHK---EYNMTIILVSHSM 205 (287)
T ss_pred HHHHHHHHHHHHHH---hcCCEEEEEeCCH
Confidence 34455555555422 2377999999984
No 154
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.49 E-value=34 Score=24.43 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+..+.+.+.+.++. ..+.+|++|||--
T Consensus 142 ~~~~~l~~~l~~~~----~~~~tiiivtH~~ 168 (192)
T cd03232 142 QAAYNIVRFLKKLA----DSGQAILCTIHQP 168 (192)
T ss_pred HHHHHHHHHHHHHH----HcCCEEEEEEcCC
Confidence 33445555555542 2367999999983
No 155
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=31.47 E-value=80 Score=23.10 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=9.5
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|+++||--
T Consensus 175 ~~~tiii~sH~~ 186 (230)
T TIGR02770 175 FGTGILLITHDL 186 (230)
T ss_pred cCCEEEEEeCCH
Confidence 367899999974
No 156
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=31.42 E-value=74 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++.. ..+.+|++|||---
T Consensus 136 ~~~l~~~l~~l~~---~~g~tiiivTHd~~ 162 (325)
T TIGR01187 136 RDQMQLELKTIQE---QLGITFVFVTHDQE 162 (325)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 3444455555432 24678999999753
No 157
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=31.37 E-value=48 Score=22.82 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.0
Q ss_pred CeEEEEeehHHHHHHHHH
Q 032238 62 KHVMVAAHGNSLRSIIMY 79 (144)
Q Consensus 62 ~~VLvVsHG~vir~ll~~ 79 (144)
++||+|+.|.+.|.-++.
T Consensus 3 ~~ILfVC~gN~cRSpmAE 20 (144)
T PRK11391 3 NSILVVCTGNICRSPIGE 20 (144)
T ss_pred CeEEEEcCCcHhHHHHHH
Confidence 579999999999886664
No 158
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=31.21 E-value=69 Score=25.44 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
+++.+.+-|+++.. ..+.++++|||---
T Consensus 188 ~QaqIl~Ll~~l~~---e~~~aiilITHDl~ 215 (316)
T COG0444 188 VQAQILDLLKELQR---EKGTALILITHDLG 215 (316)
T ss_pred HHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 46677777888743 46789999999854
No 159
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=31.20 E-value=77 Score=24.90 Aligned_cols=26 Identities=8% Similarity=0.172 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
...+.+.|.++.. ..+.+||+|||--
T Consensus 194 ~~~i~~lL~~l~~---~~g~tii~itHdl 219 (330)
T PRK15093 194 QAQIFRLLTRLNQ---NNNTTILLISHDL 219 (330)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEECCH
Confidence 4445555555422 2467999999984
No 160
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.19 E-value=83 Score=22.56 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=9.5
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 178 ~~~tii~~sH~~ 189 (211)
T cd03298 178 TKMTVLMVTHQP 189 (211)
T ss_pred cCCEEEEEecCH
Confidence 367899999964
No 161
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=30.99 E-value=79 Score=23.84 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
..+.+.+.++.. ..+.+|++|||---
T Consensus 170 ~~l~~~L~~~~~---~~~~tviivsHd~~ 195 (257)
T PRK11247 170 IEMQDLIESLWQ---QHGFTVLLVTHDVS 195 (257)
T ss_pred HHHHHHHHHHHH---HcCCEEEEEeCCHH
Confidence 344444444422 24679999999843
No 162
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=30.97 E-value=39 Score=24.34 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++. ..+.+|++|||--
T Consensus 168 ~~~l~~~l~~~~----~~~~tvi~~sH~~ 192 (213)
T cd03235 168 QEDIYELLRELR----REGMTILVVTHDL 192 (213)
T ss_pred HHHHHHHHHHHH----hcCCEEEEEeCCH
Confidence 344444454442 2467899999984
No 163
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=30.94 E-value=36 Score=24.45 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.7
Q ss_pred CCCeEEEEeeh
Q 032238 60 SGKHVMVAAHG 70 (144)
Q Consensus 60 ~~~~VLvVsHG 70 (144)
.+.+|++|||-
T Consensus 178 ~~~tiii~sh~ 188 (204)
T PRK13538 178 QGGMVILTTHQ 188 (204)
T ss_pred CCCEEEEEecC
Confidence 36789999995
No 164
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=30.69 E-value=37 Score=24.23 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
.+.+.+.+.++. ..+.+|+++||-
T Consensus 163 ~~~l~~~l~~~~----~~~~tii~~sH~ 186 (198)
T TIGR01189 163 VALLAGLLRAHL----ARGGIVLLTTHQ 186 (198)
T ss_pred HHHHHHHHHHHH----hCCCEEEEEEcc
Confidence 444555555542 235688888885
No 165
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=30.65 E-value=83 Score=22.80 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++.. ..+.+|++|||--
T Consensus 177 ~~~l~~~l~~~~~---~~~~tii~~sh~~ 202 (220)
T TIGR02982 177 GRDVVELMQKLAR---EQGCTILIVTHDN 202 (220)
T ss_pred HHHHHHHHHHHHH---HcCCEEEEEeCCH
Confidence 3444555555422 2368999999994
No 166
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=30.36 E-value=86 Score=22.99 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=9.3
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|+++||--
T Consensus 182 ~~~tiii~sH~~ 193 (236)
T TIGR03864 182 QGLSVLWATHLV 193 (236)
T ss_pred CCCEEEEEecCh
Confidence 367899999964
No 167
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=30.34 E-value=86 Score=18.46 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 38 S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
|..++.+++...++.+.. .+..|+|.-||.
T Consensus 5 s~~e~r~~~~~~l~~v~~----~~~pv~It~~g~ 34 (75)
T PF02604_consen 5 SITEFRNNFSELLDEVEE----GEEPVIITKNGK 34 (75)
T ss_dssp EHHHHHHTHHHHHHHHHH----CT-EEEEEETTE
T ss_pred cHHHHHHHHHHHHHHHHc----CCCeEEEEECCC
Confidence 567888888888888743 233466666654
No 168
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=30.17 E-value=83 Score=23.76 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+++.+.+.++.. ..+.+|++|||--
T Consensus 187 ~~~~~~~l~~~~~---~~~~tiiivsH~~ 212 (268)
T PRK10419 187 QAGVIRLLKKLQQ---QFGTACLFITHDL 212 (268)
T ss_pred HHHHHHHHHHHHH---HcCcEEEEEECCH
Confidence 3445555555422 2367899999984
No 169
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=30.13 E-value=89 Score=24.00 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.2
Q ss_pred CCCeEEEEeehHHHHHHHHHHhCCCcc
Q 032238 60 SGKHVMVAAHGNSLRSIIMYLDKLTSQ 86 (144)
Q Consensus 60 ~~~~VLvVsHG~vir~ll~~l~~~~~~ 86 (144)
.+++|||+.-||+-|+++..+......
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~ 150 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVT 150 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCC
Confidence 367899999999999999988755443
No 170
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=30.03 E-value=92 Score=22.77 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+++.+.+.++. ..+.+|++|||--
T Consensus 178 ~~~~~~~l~~~~----~~~~tiii~sH~~ 202 (224)
T cd03220 178 QEKCQRRLRELL----KQGKTVILVSHDP 202 (224)
T ss_pred HHHHHHHHHHHH----hCCCEEEEEeCCH
Confidence 344555555542 2367899999983
No 171
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=29.85 E-value=1.4e+02 Score=18.32 Aligned_cols=62 Identities=15% Similarity=-0.007 Sum_probs=31.6
Q ss_pred ehHHHHHHHHHHhCCCc-cceeeeeecCCcEEEEEEcCCceeecCCCCCCCccccccchhhHHHHHHHHHHhh
Q 032238 69 HGNSLRSIIMYLDKLTS-QEVINLELSTGIPLLYIYKEGRFMKRGSPVGPTEAGVYAYTETLALYRQELDEMS 140 (144)
Q Consensus 69 HG~vir~ll~~l~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (144)
|...+..++.++.+.+. ....-..++.-+..+-. +++ ...+-.+..| ++..+-+|++|-+|+
T Consensus 21 H~d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~-~~~-~~~ripF~~p--------~~~~~e~r~~lV~ma 83 (83)
T PF10615_consen 21 HADDLLLYARHYGGVPDAASARMTDIDRDGFDLRV-GGD-QDVRIPFPPP--------VTDPEEARDALVEMA 83 (83)
T ss_dssp -HHHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE-TTT-EEEEEE-SS-----------SHCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE-eCC-cceEcCCCCC--------CCCHHHHHHHHHHhC
Confidence 77889999999888754 34444445544444433 332 2223344444 344555677776663
No 172
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=29.72 E-value=84 Score=23.55 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=17.6
Q ss_pred CCCCH--HHHHHHHHHHHHHhhchhccCCCeEEEEee
Q 032238 35 NGESL--EMCSKQAVAYFREHIEPQLQSGKHVMVAAH 69 (144)
Q Consensus 35 gGES~--~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH 69 (144)
||-++ .+..+++.+.+..+. ..+..++||.|
T Consensus 7 GGs~l~~~~~~~~~~~~I~~~~----~~g~~~vvV~s 39 (244)
T cd04260 7 GGTSVSTKERREQVAKKVKQAV----DEGYKPVVVVS 39 (244)
T ss_pred CchhcCCHHHHHHHHHHHHHHH----HCCCCeEEEEE
Confidence 45445 344566666666553 24556777777
No 173
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=29.69 E-value=89 Score=23.19 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
...+...+.++.. ..+.+|++|||--
T Consensus 182 ~~~l~~~l~~~~~---~~~~tiiivsH~~ 207 (252)
T TIGR03005 182 VGEVLNVIRRLAS---EHDLTMLLVTHEM 207 (252)
T ss_pred HHHHHHHHHHHHH---hcCcEEEEEeCCH
Confidence 3344445555422 2367999999974
No 174
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=29.66 E-value=42 Score=24.36 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+.+...+.++. ..+.+|+++||--
T Consensus 174 ~~l~~~l~~~~----~~~~tiii~sH~~ 197 (214)
T PRK13543 174 TLVNRMISAHL----RGGGAALVTTHGA 197 (214)
T ss_pred HHHHHHHHHHH----hCCCEEEEEecCh
Confidence 34444554442 2357889999964
No 175
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=29.61 E-value=92 Score=23.39 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+++.+.+.++.. ..+.+|++|||---
T Consensus 179 ~~~l~~~L~~l~~---~~~~tiii~tH~~~ 205 (265)
T PRK10253 179 QIDLLELLSELNR---EKGYTLAAVLHDLN 205 (265)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 3445555555422 23678999999854
No 176
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=29.49 E-value=40 Score=24.70 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=9.6
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 192 ~~~tii~vsH~~ 203 (236)
T cd03219 192 RGITVLLVEHDM 203 (236)
T ss_pred CCCEEEEEecCH
Confidence 467899999963
No 177
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=29.44 E-value=79 Score=25.20 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
.+++...+.++.. ..+.++++|||----
T Consensus 172 r~~l~~~l~~l~~---~~g~tii~vTHd~~e 199 (351)
T PRK11432 172 RRSMREKIRELQQ---QFNITSLYVTHDQSE 199 (351)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEcCCHHH
Confidence 3344444555422 346799999998654
No 178
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=29.41 E-value=88 Score=23.79 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=15.7
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
.+...+.++.. ..+.+||+|||---.
T Consensus 182 ~l~~~l~~l~~---~~g~tillvtH~~~~ 207 (280)
T PRK13633 182 EVVNTIKELNK---KYGITIILITHYMEE 207 (280)
T ss_pred HHHHHHHHHHH---hcCCEEEEEecChHH
Confidence 44444554421 246799999998553
No 179
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=29.32 E-value=89 Score=23.32 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++.. ..+.+|++|||---
T Consensus 187 ~~~l~~~l~~~~~---~~~~tii~isH~~~ 213 (258)
T PRK11701 187 QARLLDLLRGLVR---ELGLAVVIVTHDLA 213 (258)
T ss_pred HHHHHHHHHHHHH---hcCcEEEEEeCCHH
Confidence 3344444444321 23678999999843
No 180
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=29.25 E-value=97 Score=21.70 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
+..+.+.+.+.++.. +.+.+|+++||---
T Consensus 131 ~~~~~~~~~l~~~~~---~~~~tiii~sh~~~ 159 (180)
T cd03214 131 AHQIELLELLRRLAR---ERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 345566666666522 22579999999844
No 181
>PLN02934 triacylglycerol lipase
Probab=29.24 E-value=1.5e+02 Score=25.24 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhchhccCCCeEEEEee--hHHHHHHHHH
Q 032238 40 EMCSKQAVAYFREHIEPQLQSGKHVMVAAH--GNSLRSIIMY 79 (144)
Q Consensus 40 ~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH--G~vir~ll~~ 79 (144)
...+..+...+++++. .+++.+|+|++| ||++..+...
T Consensus 301 ~~Ay~~v~~~lk~ll~--~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 301 RSAYYAVRSKLKSLLK--EHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred hhHHHHHHHHHHHHHH--HCCCCeEEEeccccHHHHHHHHHH
Confidence 3556678888888775 367789999999 6888877764
No 182
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.08 E-value=91 Score=23.55 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=9.7
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|+++||--
T Consensus 210 ~g~tiii~tH~~ 221 (269)
T cd03294 210 LQKTIVFITHDL 221 (269)
T ss_pred cCCEEEEEeCCH
Confidence 367999999973
No 183
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=29.01 E-value=1e+02 Score=21.94 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++. ..+.+|+++||---
T Consensus 170 ~~~l~~~l~~~~----~~~~tii~~sh~~~ 195 (206)
T TIGR03608 170 RDEVLDLLLELN----DEGKTIIIVTHDPE 195 (206)
T ss_pred HHHHHHHHHHHH----hcCCEEEEEeCCHH
Confidence 344445555542 23679999999854
No 184
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=28.76 E-value=1.9e+02 Score=23.00 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHH----HHHHHHHHhCCC
Q 032238 35 NGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNS----LRSIIMYLDKLT 84 (144)
Q Consensus 35 gGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v----ir~ll~~l~~~~ 84 (144)
++.|..+...++...+.+++.. ...+ +|+.||.. .-++.+..+++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~--~~Pd--~vlv~GD~~~~la~alaA~~~~IP 119 (365)
T TIGR03568 70 SNAGMAKSMGLTIIGFSDAFER--LKPD--LVVVLGDRFEMLAAAIAAALLNIP 119 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH--hCCC--EEEEeCCchHHHHHHHHHHHhCCc
Confidence 4679999999999999998872 3334 67777755 334445555655
No 185
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.75 E-value=92 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
+++...+.++.. ..+.+|++|||---.
T Consensus 178 ~~l~~~l~~l~~---~~g~tillvsH~~~~ 204 (283)
T PRK13636 178 SEIMKLLVEMQK---ELGLTIIIATHDIDI 204 (283)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEecCHHH
Confidence 345555555422 237799999998654
No 186
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.64 E-value=91 Score=23.80 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+.+.+.+.++.. ..+.+|++|||--
T Consensus 187 ~~l~~~l~~~~~---~~~~tiiiisH~~ 211 (289)
T PRK13645 187 EDFINLFERLNK---EYKKRIIMVTHNM 211 (289)
T ss_pred HHHHHHHHHHHH---hcCCEEEEEecCH
Confidence 344444444422 2367999999974
No 187
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.49 E-value=96 Score=23.63 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=10.6
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|++|||---
T Consensus 193 ~g~tvli~tH~~~ 205 (282)
T PRK13640 193 NNLTVISITHDID 205 (282)
T ss_pred cCCEEEEEecCHH
Confidence 3679999999954
No 188
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=28.37 E-value=1e+02 Score=22.38 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+.+.+.+.++.. ..+.+|+++||--
T Consensus 168 ~~l~~~l~~~~~---~~~~tii~~sH~~ 192 (230)
T TIGR03410 168 KDIGRVIRRLRA---EGGMAILLVEQYL 192 (230)
T ss_pred HHHHHHHHHHHH---cCCcEEEEEeCCH
Confidence 344444444321 2367999999985
No 189
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=28.36 E-value=95 Score=21.76 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=31.0
Q ss_pred CCCCCCHHHH--HHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCC
Q 032238 33 PPNGESLEMC--SKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLT 84 (144)
Q Consensus 33 ~pgGES~~~~--~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~ 84 (144)
.|||.....+ ...+.+++++.. ..++.|+.|+||..+-+-...+.|..
T Consensus 82 v~GG~~~~~~~~~~~~~~~l~~~~----~~~k~i~~ic~G~~~La~agll~g~~ 131 (180)
T cd03169 82 IPGGRAPEYLRLDEKVLAIVRHFA----EANKPVAAICHGPQILAAAGVLKGRR 131 (180)
T ss_pred EcCCCChhhhccCHHHHHHHHHHH----HcCCEEEEECcHHHHHHHcCccCCCE
Confidence 4777654433 245666666653 35789999999998766655554543
No 190
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=28.35 E-value=96 Score=23.23 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=14.3
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+...+.++.. ..+.+|+++||--
T Consensus 178 ~l~~~l~~~~~---~~~~tiii~sH~~ 201 (258)
T PRK13548 178 HVLRLARQLAH---ERGLAVIVVLHDL 201 (258)
T ss_pred HHHHHHHHHHH---hcCCEEEEEECCH
Confidence 34444444421 2467899999974
No 191
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=28.32 E-value=67 Score=17.39 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhc
Q 032238 35 NGESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 35 gGES~~~~~~Rv~~~l~~l~~ 55 (144)
.|+|..+..+.+..++...++
T Consensus 27 ~G~t~eea~~~~~eal~~~le 47 (48)
T PF03681_consen 27 QGDTLEEALENAKEALELWLE 47 (48)
T ss_dssp EESSHHHHHHHHHHHHHHHCT
T ss_pred cCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999987653
No 192
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.31 E-value=95 Score=23.80 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=10.2
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|++|||---
T Consensus 195 ~g~tviiitHd~~ 207 (290)
T PRK13634 195 KGLTTVLVTHSME 207 (290)
T ss_pred cCCEEEEEeCCHH
Confidence 4679999999843
No 193
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=28.30 E-value=90 Score=24.57 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
..+...|.++.. ..+.+||+|||---
T Consensus 198 ~~i~~lL~~l~~---~~g~til~iTHdl~ 223 (330)
T PRK09473 198 AQIMTLLNELKR---EFNTAIIMITHDLG 223 (330)
T ss_pred HHHHHHHHHHHH---HcCCEEEEEECCHH
Confidence 344445555432 34679999999854
No 194
>PRK10126 tyrosine phosphatase; Provisional
Probab=28.16 E-value=62 Score=22.20 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.1
Q ss_pred CeEEEEeehHHHHHHHHH
Q 032238 62 KHVMVAAHGNSLRSIIMY 79 (144)
Q Consensus 62 ~~VLvVsHG~vir~ll~~ 79 (144)
.+||+|+.|.+.|.-++.
T Consensus 3 ~~iLFVC~gN~cRSpmAE 20 (147)
T PRK10126 3 NNILVVCVGNICRSPTAE 20 (147)
T ss_pred CeEEEEcCCcHhHHHHHH
Confidence 479999999999886664
No 195
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=28.05 E-value=42 Score=23.98 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
..+.+.+.+.++. ..+.+|+++||--
T Consensus 146 ~~~~l~~~l~~~~----~~~~tiii~sh~~ 171 (194)
T cd03213 146 SALQVMSLLRRLA----DTGRTIICSIHQP 171 (194)
T ss_pred HHHHHHHHHHHHH----hCCCEEEEEecCc
Confidence 3455556665542 2377999999973
No 196
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=27.96 E-value=90 Score=24.90 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
.+.+.+.+.++.. ..+.+|++|||----
T Consensus 170 r~~l~~~L~~l~~---~~~~tvi~vTHd~~e 197 (353)
T TIGR03265 170 REHLRTEIRQLQR---RLGVTTIMVTHDQEE 197 (353)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEcCCHHH
Confidence 4445555555432 346799999998753
No 197
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=27.93 E-value=1e+02 Score=22.70 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=9.4
Q ss_pred CCeEEEEeehH
Q 032238 61 GKHVMVAAHGN 71 (144)
Q Consensus 61 ~~~VLvVsHG~ 71 (144)
+.+|+++||--
T Consensus 181 ~~tvli~sH~~ 191 (237)
T TIGR00968 181 HVTTVFVTHDQ 191 (237)
T ss_pred CCEEEEEeCCH
Confidence 67999999964
No 198
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.84 E-value=1e+02 Score=23.21 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=9.7
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 192 ~~~tiiivtH~~ 203 (269)
T PRK13648 192 HNITIISITHDL 203 (269)
T ss_pred cCCEEEEEecCc
Confidence 367999999974
No 199
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=27.81 E-value=45 Score=25.27 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=9.8
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 191 ~g~tviivsH~~ 202 (272)
T PRK15056 191 EGKTMLVSTHNL 202 (272)
T ss_pred CCCEEEEEeCCH
Confidence 467899999974
No 200
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=27.78 E-value=46 Score=24.01 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
+.+.+.+.++. ..+.+|+++||--
T Consensus 164 ~~l~~~l~~~~----~~~~tiii~sH~~ 187 (207)
T PRK13539 164 ALFAELIRAHL----AQGGIVIAATHIP 187 (207)
T ss_pred HHHHHHHHHHH----HCCCEEEEEeCCc
Confidence 34445554442 2367889999874
No 201
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=27.72 E-value=44 Score=24.16 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++. ..+.+|++|||--
T Consensus 172 ~~~l~~~l~~~~----~~~~tii~~tH~~ 196 (218)
T cd03266 172 TRALREFIRQLR----ALGKCILFSTHIM 196 (218)
T ss_pred HHHHHHHHHHHH----HCCCEEEEEeCCH
Confidence 334444454442 2367999999974
No 202
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=27.58 E-value=96 Score=25.02 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
..+++...+.++.. ..+.+|++|||---.
T Consensus 179 ~r~~l~~~L~~l~~---~~g~tiI~vTHd~~e 207 (375)
T PRK09452 179 LRKQMQNELKALQR---KLGITFVFVTHDQEE 207 (375)
T ss_pred HHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 34455555555532 346799999998553
No 203
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=27.58 E-value=47 Score=24.40 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
..+++.+.+.++. ..+.+|+++||-
T Consensus 172 ~~~~l~~~l~~~~----~~~~tiii~sH~ 196 (237)
T PRK11614 172 IIQQIFDTIEQLR----EQGMTIFLVEQN 196 (237)
T ss_pred HHHHHHHHHHHHH----HCCCEEEEEeCc
Confidence 3445555555542 236789999996
No 204
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=27.49 E-value=1.6e+02 Score=23.79 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCCCccceeeeeec
Q 032238 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKLTSQEVINLELS 94 (144)
Q Consensus 38 S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~~~~~~~~~~~~ 94 (144)
+..+..+-+...|... ..-+++.||+||-....-+-..+.+++.+.+.++-.|
T Consensus 41 ~r~~yl~~li~sL~~~----~~I~~~llifSHd~~~~ein~~v~~I~Fc~v~QIf~P 93 (356)
T PF05060_consen 41 NRPEYLKLLIDSLSQA----RGIEEALLIFSHDFYSEEINDLVQSIDFCRVMQIFYP 93 (356)
T ss_pred CcHHHHHHHHHHHHHh----hCccceEEEEeccCChHHHHHHHHhCCcceeEEEecc
Confidence 3445555555555553 2457899999999999888888888887776665444
No 205
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=27.49 E-value=94 Score=24.52 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=15.7
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
.+...+.++.. ..+.+||+|||---.
T Consensus 199 ~i~~lL~~l~~---~~~~til~iTHdl~~ 224 (331)
T PRK15079 199 QVVNLLQQLQR---EMGLSLIFIAHDLAV 224 (331)
T ss_pred HHHHHHHHHHH---HcCCEEEEEeCCHHH
Confidence 34444554422 236799999998543
No 206
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=27.45 E-value=94 Score=24.46 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=15.8
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
.+.+.|.++.. ..+.+||+|||---.
T Consensus 192 ~i~~lL~~l~~---~~g~til~iTHdl~~ 217 (327)
T PRK11308 192 QVLNLMMDLQQ---ELGLSYVFISHDLSV 217 (327)
T ss_pred HHHHHHHHHHH---HcCCEEEEEeCCHHH
Confidence 34444444422 346799999998544
No 207
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=27.37 E-value=45 Score=24.89 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=9.7
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 201 ~g~tiiivsH~~ 212 (257)
T PRK10619 201 EGKTMVVVTHEM 212 (257)
T ss_pred cCCEEEEEeCCH
Confidence 478899999974
No 208
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=27.33 E-value=97 Score=23.86 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=17.4
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
+..+.+.++.. ..++.++|+|||-
T Consensus 209 ~ll~~l~~~~~--~~~~~~ll~VtHh 232 (257)
T COG1119 209 QLLNRLEELAA--SPGAPALLFVTHH 232 (257)
T ss_pred HHHHHHHHHhc--CCCCceEEEEEcc
Confidence 46677777754 2457889999994
No 209
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=27.18 E-value=50 Score=24.24 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=9.4
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 193 ~~~tvi~vsH~~ 204 (243)
T TIGR01978 193 PDRSFLIITHYQ 204 (243)
T ss_pred CCcEEEEEEecH
Confidence 467899999964
No 210
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=27.13 E-value=31 Score=22.28 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=21.3
Q ss_pred cccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCC
Q 032238 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGE 37 (144)
Q Consensus 2 ~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGE 37 (144)
||--+|...+.|.+--|. ++.|+.|- +.||.||
T Consensus 31 ~gGaD~~Ae~~I~ei~p~--YePWF~Pl-~EPpSGE 63 (97)
T COG1930 31 FGGADGEAEEVITEIKPG--YEPWFQPL-WEPPSGE 63 (97)
T ss_pred ccCCcchhhHHHHHhCCC--CCcccccc-cCCCCcc
Confidence 444556666667666664 67888764 3567886
No 211
>PRK13696 hypothetical protein; Provisional
Probab=27.06 E-value=61 Score=19.32 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHH
Q 032238 34 PNGESLEMCSKQAV 47 (144)
Q Consensus 34 pgGES~~~~~~Rv~ 47 (144)
-+|||+.+|..|..
T Consensus 20 k~~~SFSevi~~L~ 33 (62)
T PRK13696 20 KGDKSFSEVIRELI 33 (62)
T ss_pred hCCCCHHHHHHHHH
Confidence 38999999999988
No 212
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.06 E-value=47 Score=22.69 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
....++.+.+.++.. .+.+++++||---
T Consensus 114 ~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 141 (157)
T cd00267 114 ASRERLLELLRELAE----EGRTVIIVTHDPE 141 (157)
T ss_pred HHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 335566666666532 2579999999843
No 213
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=26.90 E-value=92 Score=25.97 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=9.8
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|++|||---
T Consensus 218 ~g~tviivtHd~~ 230 (520)
T TIGR03269 218 SGISMVLTSHWPE 230 (520)
T ss_pred cCcEEEEEeCCHH
Confidence 3678999999743
No 214
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=26.87 E-value=58 Score=22.79 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=9.5
Q ss_pred CCeEEEEeehHH
Q 032238 61 GKHVMVAAHGNS 72 (144)
Q Consensus 61 ~~~VLvVsHG~v 72 (144)
+.+|+++||---
T Consensus 147 ~~tii~~sh~~~ 158 (178)
T cd03247 147 DKTLIWITHHLT 158 (178)
T ss_pred CCEEEEEecCHH
Confidence 578999999753
No 215
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=26.85 E-value=47 Score=24.47 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++. ..+.+|+++||--
T Consensus 172 ~~~l~~~l~~~~----~~~~tiii~sH~~ 196 (240)
T PRK09493 172 RHEVLKVMQDLA----EEGMTMVIVTHEI 196 (240)
T ss_pred HHHHHHHHHHHH----HcCCEEEEEeCCH
Confidence 334444444442 2367899999974
No 216
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=26.83 E-value=93 Score=23.96 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeehHHHH
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLR 74 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir 74 (144)
-...|...-++.+.+ ....|..|++||.|++--
T Consensus 29 laLgrla~IVEqV~~-L~~~G~evilVSSGaVA~ 61 (285)
T KOG1154|consen 29 LALGRLASIVEQVSE-LQRMGREVILVSSGAVAF 61 (285)
T ss_pred chHHHHHHHHHHHHH-HHhcCceEEEEecchhhh
Confidence 345666666666544 346788999999999863
No 217
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=26.78 E-value=28 Score=20.34 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=13.4
Q ss_pred cchhhHHHHHHHHHHhhhhc
Q 032238 124 AYTETLALYRQELDEMSQRT 143 (144)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~ 143 (144)
-|.+|..||.+.|++++.+|
T Consensus 16 Yy~~h~~L~E~DL~~L~~kS 35 (56)
T PF11569_consen 16 YYLKHKQLQEEDLDELCDKS 35 (56)
T ss_dssp HHHHT----TTHHHHHHHHT
T ss_pred HHHHcCCccHhhHHHHHHHH
Confidence 57889999999999998776
No 218
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=26.63 E-value=1.1e+02 Score=24.78 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHH
Q 032238 34 PNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSI 76 (144)
Q Consensus 34 pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~l 76 (144)
+.|+--....+.+.+.+..+. ..|..|++||.|++-.-+
T Consensus 21 ~~g~l~~~~l~~l~~~ia~L~----~~G~eVilVSSGAiaaG~ 59 (369)
T COG0263 21 GTGGLDRSKLEELVRQVAALH----KAGHEVVLVSSGAIAAGR 59 (369)
T ss_pred CCCCcCHHHHHHHHHHHHHHH----hCCCEEEEEccchhhhCh
Confidence 355555666777777777763 468899999999876443
No 219
>PRK00865 glutamate racemase; Provisional
Probab=26.57 E-value=1.5e+02 Score=22.54 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=36.7
Q ss_pred HHHHHHhhHHHHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 11 QETAERYGKELVHGWRRSYDIPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 11 ~ei~~~~p~~~~~~~~~~~~~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.++.+..|.+.+-+. .+....|.|.-|.+++.+|+.+.++.+.. .+-+-|+|-|-..
T Consensus 22 ~~i~~~lp~~~~iY~-~D~~~~PYG~ks~~~i~~~~~~~~~~L~~---~g~d~iVIaCNTa 78 (261)
T PRK00865 22 REIRRLLPDEHIIYV-GDTARFPYGEKSEEEIRERTLEIVEFLLE---YGVKMLVIACNTA 78 (261)
T ss_pred HHHHHHCCCCCEEEE-ecCCCCCCCCCCHHHHHHHHHHHHHHHHh---CCCCEEEEeCchH
Confidence 466677775422222 22223345778999999999999999854 3446666666654
No 220
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.54 E-value=36 Score=27.09 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=24.2
Q ss_pred CCCccccccchhhHHHHHHHHHHhhhhcC
Q 032238 116 GPTEAGVYAYTETLALYRQELDEMSQRTS 144 (144)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (144)
-.+..++-.|..+|+..||++|+...+++
T Consensus 178 ~h~~~~~~~yd~~l~d~rqh~dr~~~~~~ 206 (402)
T COG3551 178 QHVEEGADIYDVHLSDLRQHPDRLVAAVN 206 (402)
T ss_pred HhccchhhhHHHHHhhHHhChHHHHHHhc
Confidence 35667888999999999999999877653
No 221
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.53 E-value=1.1e+02 Score=23.22 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++.. ..+.+|+++||--
T Consensus 173 ~~~l~~~l~~l~~---~~g~tvli~tH~~ 198 (277)
T PRK13652 173 VKELIDFLNDLPE---TYGMTVIFSTHQL 198 (277)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEecCH
Confidence 3344455555422 2367999999983
No 222
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=26.50 E-value=52 Score=23.89 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+...+.++. ..+.+|++|||--.
T Consensus 185 ~~~l~~~l~~~~----~~g~tii~vsH~~~ 210 (224)
T TIGR02324 185 RQVVVELIAEAK----ARGAALIGIFHDEE 210 (224)
T ss_pred HHHHHHHHHHHH----hcCCEEEEEeCCHH
Confidence 334445555442 23678999999844
No 223
>PLN02454 triacylglycerol lipase
Probab=26.48 E-value=1.8e+02 Score=24.02 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhchhccCCC--eEEEEee--hHHHHHHHHH
Q 032238 41 MCSKQAVAYFREHIEPQLQSGK--HVMVAAH--GNSLRSIIMY 79 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~--~VLvVsH--G~vir~ll~~ 79 (144)
.+.+.+...++++++ .+++. +|.|+.| ||+|..|.+.
T Consensus 207 S~r~qvl~~V~~l~~--~Yp~~~~sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 207 SARSQLLAKIKELLE--RYKDEKLSIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHHHHHH--hCCCCCceEEEEecCHHHHHHHHHHH
Confidence 577788888888876 24443 5999999 6777777664
No 224
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.46 E-value=1.1e+02 Score=23.20 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=10.5
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|++|||---
T Consensus 190 ~~~tilivsH~~~ 202 (279)
T PRK13635 190 KGITVLSITHDLD 202 (279)
T ss_pred CCCEEEEEecCHH
Confidence 3779999999854
No 225
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.34 E-value=43 Score=24.09 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++. ..+.+|+++||---
T Consensus 164 ~~~~~~~l~~~~----~~~~tii~~sH~~~ 189 (210)
T cd03269 164 VELLKDVIRELA----RAGKTVILSTHQME 189 (210)
T ss_pred HHHHHHHHHHHH----HCCCEEEEECCCHH
Confidence 334444454442 23679999999743
No 226
>PRK04155 chaperone protein HchA; Provisional
Probab=26.26 E-value=84 Score=24.48 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=25.8
Q ss_pred CCCCCCC-CHHHHHH--HHHHHHHHhhchhccCCCeEEEEeehHHHHH
Q 032238 31 IPPPNGE-SLEMCSK--QAVAYFREHIEPQLQSGKHVMVAAHGNSLRS 75 (144)
Q Consensus 31 ~~~pgGE-S~~~~~~--Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ 75 (144)
+-.|||- ...++.+ .+.+.++... ..++-|..||||..+-.
T Consensus 151 V~iPGG~g~~~dL~~~~~l~~ll~~~~----~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 151 VFIPGGHGALIGLPESEDVAAALQWAL----DNDRFIITLCHGPAALL 194 (287)
T ss_pred EEECCCCchHHHHhhCHHHHHHHHHHH----HcCCEEEEEChHHHHHH
Confidence 3468884 3444432 4555565543 45789999999996433
No 227
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=26.25 E-value=55 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=13.6
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+...+.++. ..+.+|++|||--
T Consensus 171 ~~~~~l~~~~----~~~~tii~itH~~ 193 (213)
T cd03279 171 AVATALELIR----TENRMVGVISHVE 193 (213)
T ss_pred HHHHHHHHHH----hCCCEEEEEECch
Confidence 3444454442 2366899999953
No 228
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=26.24 E-value=45 Score=23.90 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+...+.++. ..+.+|++|||---
T Consensus 162 ~~~l~~~l~~~~----~~~~tii~~tH~~~ 187 (208)
T cd03268 162 IKELRELILSLR----DQGITVLISSHLLS 187 (208)
T ss_pred HHHHHHHHHHHH----HCCCEEEEEcCCHH
Confidence 344445555542 23678999999744
No 229
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=26.17 E-value=1e+02 Score=24.46 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+++.+.+.++.. ..+.+|++|||---
T Consensus 164 ~~~l~~~L~~l~~---~~g~tii~vTHd~~ 190 (352)
T PRK11144 164 KRELLPYLERLAR---EINIPILYVSHSLD 190 (352)
T ss_pred HHHHHHHHHHHHH---hcCCeEEEEecCHH
Confidence 4445555555432 23678999999853
No 230
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=26.07 E-value=1.1e+02 Score=24.60 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++.. ..+.+|++|||---
T Consensus 165 r~~l~~~l~~l~~---~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 165 RDSMQDELKKLQA---TLQKTIVFITHDLD 191 (363)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 3344444444421 34789999999864
No 231
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.03 E-value=1.2e+02 Score=22.81 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=9.5
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 200 ~~~tiiivsH~~ 211 (261)
T PRK14258 200 SELTMVIVSHNL 211 (261)
T ss_pred CCCEEEEEECCH
Confidence 367899999974
No 232
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=25.99 E-value=1.1e+02 Score=24.36 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
+.+...+.++.. ..+.+|++|||---
T Consensus 168 ~~l~~~L~~l~~---~~g~tiiivtH~~~ 193 (354)
T TIGR02142 168 YEILPYLERLHA---EFGIPILYVSHSLQ 193 (354)
T ss_pred HHHHHHHHHHHH---hcCCEEEEEecCHH
Confidence 334444544422 23678999999754
No 233
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=25.99 E-value=1.1e+02 Score=24.09 Aligned_cols=13 Identities=8% Similarity=0.197 Sum_probs=10.5
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+||+|||---
T Consensus 203 ~g~til~iTHdl~ 215 (326)
T PRK11022 203 ENMALVLITHDLA 215 (326)
T ss_pred cCCEEEEEeCCHH
Confidence 4679999999854
No 234
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=25.98 E-value=1e+02 Score=25.11 Aligned_cols=12 Identities=8% Similarity=0.263 Sum_probs=10.0
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 214 ~g~TIIivTHd~ 225 (400)
T PRK10070 214 HQRTIVFISHDL 225 (400)
T ss_pred CCCeEEEEECCH
Confidence 477999999974
No 235
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=25.88 E-value=48 Score=24.45 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+++.+.+.++. ..+.+|++|||--.
T Consensus 177 ~~~l~~~l~~~~----~~~~tii~~sh~~~ 202 (242)
T PRK11124 177 TAQIVSIIRELA----ETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHHHHHHHH----HcCCEEEEEeCCHH
Confidence 444555555542 23678999999843
No 236
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=25.81 E-value=1e+02 Score=24.70 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+++...+.++.. ..+.+|++|||---
T Consensus 169 ~~~l~~~L~~l~~---~~g~tvI~vTHd~~ 195 (369)
T PRK11000 169 RVQMRIEISRLHK---RLGRTMIYVTHDQV 195 (369)
T ss_pred HHHHHHHHHHHHH---HhCCEEEEEeCCHH
Confidence 3444455555432 23678999999864
No 237
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=25.74 E-value=90 Score=18.76 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHhhc
Q 032238 37 ESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 37 ES~~~~~~Rv~~~l~~l~~ 55 (144)
||.++|.+|+..+-.++..
T Consensus 42 EsveEVi~kI~~y~rkI~~ 60 (67)
T COG1582 42 ESVEEVINKIIEYRRKIGS 60 (67)
T ss_pred ccHHHHHHHHHHHHHHhhe
Confidence 9999999999999998743
No 238
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=25.58 E-value=54 Score=23.69 Aligned_cols=12 Identities=8% Similarity=0.387 Sum_probs=9.6
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|+++||--
T Consensus 181 ~~~tiii~sH~~ 192 (222)
T cd03224 181 EGVTILLVEQNA 192 (222)
T ss_pred CCCEEEEEeCCH
Confidence 467999999973
No 239
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=25.58 E-value=51 Score=24.04 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++. ..+.+|+++||--
T Consensus 169 ~~~~~~~l~~~~----~~~~tii~~sH~~ 193 (232)
T cd03218 169 VQDIQKIIKILK----DRGIGVLITDHNV 193 (232)
T ss_pred HHHHHHHHHHHH----HCCCEEEEEeCCH
Confidence 334444555442 2367899999963
No 240
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=25.55 E-value=1.1e+02 Score=24.36 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
..+.+.+.+.++.. ..+.++++|||---.
T Consensus 171 ~r~~l~~~L~~l~~---~~g~tii~vTHd~~e 199 (353)
T PRK10851 171 VRKELRRWLRQLHE---ELKFTSVFVTHDQEE 199 (353)
T ss_pred HHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 34445555555532 336789999998653
No 241
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=25.33 E-value=1.1e+02 Score=24.43 Aligned_cols=26 Identities=8% Similarity=-0.011 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
+.+...+.++.. ..+.+|++|||---
T Consensus 171 ~~l~~~l~~l~~---~~g~tii~vTHd~~ 196 (356)
T PRK11650 171 VQMRLEIQRLHR---RLKTTSLYVTHDQV 196 (356)
T ss_pred HHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 344445555422 33679999999753
No 242
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=25.28 E-value=60 Score=23.26 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=9.4
Q ss_pred CCeEEEEeehHH
Q 032238 61 GKHVMVAAHGNS 72 (144)
Q Consensus 61 ~~~VLvVsHG~v 72 (144)
+.+|++|||---
T Consensus 174 ~~tiii~th~~~ 185 (207)
T cd03369 174 NSTILTIAHRLR 185 (207)
T ss_pred CCEEEEEeCCHH
Confidence 678999999744
No 243
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=25.23 E-value=1.1e+02 Score=24.11 Aligned_cols=27 Identities=7% Similarity=0.271 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++.. ..+.+|+++||---
T Consensus 176 ~~~l~~~L~~l~~---~~g~tiilvtH~~~ 202 (343)
T PRK11153 176 TRSILELLKDINR---ELGLTIVLITHEMD 202 (343)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 3444555555421 23679999999853
No 244
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=25.23 E-value=1.3e+02 Score=21.51 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
..+++...+.++. ..+.+|+++||--
T Consensus 170 ~~~~l~~~l~~~~----~~~~tvi~~sh~~ 195 (213)
T cd03262 170 LVGEVLDVMKDLA----EEGMTMVVVTHEM 195 (213)
T ss_pred HHHHHHHHHHHHH----HcCCEEEEEeCCH
Confidence 3455555565542 2367899999974
No 245
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=25.21 E-value=1.1e+02 Score=24.48 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 40 EMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 40 ~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
..+.+.+.++|.++.. .-+-++++|||---
T Consensus 170 a~vr~~lr~wLr~~~~---~~~~ttvfVTHD~e 199 (345)
T COG1118 170 AKVRKELRRWLRKLHD---RLGVTTVFVTHDQE 199 (345)
T ss_pred HHHHHHHHHHHHHHHH---hhCceEEEEeCCHH
Confidence 3455666666766643 34678999999854
No 246
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=25.21 E-value=82 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=17.7
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
.+.+++++.. ..++-|..||||..+
T Consensus 113 ~l~~lv~~f~----~~gK~VaAIChgp~~ 137 (213)
T cd03133 113 EVERLVREFH----QAGKPIGAICIAPAL 137 (213)
T ss_pred HHHHHHHHHH----HCCCeEEEECHHHHH
Confidence 4555555543 467889999999865
No 247
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=25.20 E-value=55 Score=24.23 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=9.9
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|++|||---
T Consensus 200 ~g~tii~~tH~~~ 212 (252)
T CHL00131 200 SENSIILITHYQR 212 (252)
T ss_pred CCCEEEEEecCHH
Confidence 3678999999643
No 248
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.19 E-value=1.2e+02 Score=22.19 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=9.2
Q ss_pred CCeEEEEeehH
Q 032238 61 GKHVMVAAHGN 71 (144)
Q Consensus 61 ~~~VLvVsHG~ 71 (144)
+.+|+++||--
T Consensus 180 ~~tili~tH~~ 190 (235)
T cd03299 180 GVTVLHVTHDF 190 (235)
T ss_pred CCEEEEEecCH
Confidence 67999999954
No 249
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=25.18 E-value=1.1e+02 Score=22.86 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=24.4
Q ss_pred CCCCC-CCHHHHHH--HHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 32 PPPNG-ESLEMCSK--QAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 32 ~~pgG-ES~~~~~~--Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
-.||| -...++.. .+.+.+++.. ..++-|..||||..+
T Consensus 101 ~iPGG~g~~~dl~~~~~l~~ll~~f~----~~gK~VaAICHGp~~ 141 (232)
T cd03148 101 FIPGGHGALIGIPESQDVAAALQWAI----KNDRFVITLCHGPAA 141 (232)
T ss_pred EECCCCCChhhcccCHHHHHHHHHHH----HcCCEEEEECcHHHH
Confidence 45888 44545433 3555555542 457889999999964
No 250
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=25.13 E-value=1e+02 Score=18.55 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhc
Q 032238 34 PNGESLEMCSKQAVAYFREHIE 55 (144)
Q Consensus 34 pgGES~~~~~~Rv~~~l~~l~~ 55 (144)
..|+|+.++.+++..+++-.++
T Consensus 28 s~G~T~eea~~n~~eai~l~~e 49 (73)
T COG1598 28 SQGETLEEALQNAKEAIELHLE 49 (73)
T ss_pred ccCCCHHHHHHHHHHHHHHHHH
Confidence 4699999999999999988766
No 251
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=25.11 E-value=55 Score=24.08 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=9.1
Q ss_pred CCCeEEEEeeh
Q 032238 60 SGKHVMVAAHG 70 (144)
Q Consensus 60 ~~~~VLvVsHG 70 (144)
.+.+|+++||-
T Consensus 186 ~g~tiii~sH~ 196 (241)
T PRK10895 186 SGLGVLITDHN 196 (241)
T ss_pred cCCEEEEEEcC
Confidence 46799999995
No 252
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=25.08 E-value=1.7e+02 Score=18.40 Aligned_cols=35 Identities=11% Similarity=0.376 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHH
Q 032238 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSII 77 (144)
Q Consensus 38 S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll 77 (144)
+..++..+....|+.+ ..|+.|.|--||..+.-++
T Consensus 6 ~i~e~k~~~S~lL~rV-----~aGEev~IT~~G~PVAriv 40 (84)
T COG4118 6 NIRELRTHLSELLRRV-----RAGEEVIITKRGRPVARLV 40 (84)
T ss_pred cHHHHHHHHHHHHHHH-----hCCCEEEEeeCCeEEEEEe
Confidence 5677888888888886 3588899999997764443
No 253
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.98 E-value=59 Score=22.64 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++ . .+.+|+++||-.
T Consensus 132 ~~~l~~~l~~~-~----~~~tii~~sh~~ 155 (171)
T cd03228 132 EALILEALRAL-A----KGKTVIVIAHRL 155 (171)
T ss_pred HHHHHHHHHHh-c----CCCEEEEEecCH
Confidence 44445555444 1 246888999874
No 254
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=24.94 E-value=1.3e+02 Score=20.37 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=30.5
Q ss_pred CCCCCC-CHHHH--HHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhCC
Q 032238 32 PPPNGE-SLEMC--SKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDKL 83 (144)
Q Consensus 32 ~~pgGE-S~~~~--~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~~ 83 (144)
-.|||. ....+ .+++.+++++.. ..++.|..++||..+-+-...+.|.
T Consensus 65 iipGg~~~~~~~~~~~~l~~~l~~~~----~~~~~i~~ic~g~~~La~aglL~g~ 115 (163)
T cd03135 65 VIPGGLPGAQNLADNEKLIKLLKEFN----AKGKLIAAICAAPAVLAKAGLLKGK 115 (163)
T ss_pred EECCCCchHHHHHhCHHHHHHHHHHH----HcCCEEEEEchhHHHHHHcCCcCCC
Confidence 357886 44443 345666666653 3578899999998876555444443
No 255
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.86 E-value=54 Score=24.36 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=8.4
Q ss_pred CCeEEEEeehH
Q 032238 61 GKHVMVAAHGN 71 (144)
Q Consensus 61 ~~~VLvVsHG~ 71 (144)
+.+||+|||--
T Consensus 196 ~~tilivsh~~ 206 (251)
T PRK14249 196 NYTIAIVTHNM 206 (251)
T ss_pred CCEEEEEeCCH
Confidence 56888888853
No 256
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=24.82 E-value=61 Score=23.69 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=9.7
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|+++||--
T Consensus 162 ~~~tvii~sH~~ 173 (223)
T TIGR03771 162 AGTAILMTTHDL 173 (223)
T ss_pred cCCEEEEEeCCH
Confidence 367999999974
No 257
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=24.69 E-value=1e+02 Score=24.96 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHH
Q 032238 40 EMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLR 74 (144)
Q Consensus 40 ~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir 74 (144)
.++..++.+.+.++. ..+..|+||+.|++..
T Consensus 26 ~~~i~~la~~I~~l~----~~G~~vvlVsSGava~ 56 (368)
T PRK13402 26 SHYLLGLVQQIVYLK----DQGHQVVLVSSGAVAA 56 (368)
T ss_pred HHHHHHHHHHHHHHH----HCCCEEEEEeCChhhc
Confidence 366667777777663 3577899999998443
No 258
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.62 E-value=58 Score=24.68 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=9.7
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 194 ~~~tiiivsH~~ 205 (280)
T PRK13649 194 SGMTIVLVTHLM 205 (280)
T ss_pred CCCEEEEEeccH
Confidence 367999999974
No 259
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=24.50 E-value=54 Score=23.10 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++. ..+.+|+++||--
T Consensus 140 ~~~l~~~l~~~~----~~~~tiii~sh~~ 164 (182)
T cd03215 140 KAEIYRLIRELA----DAGKAVLLISSEL 164 (182)
T ss_pred HHHHHHHHHHHH----HCCCEEEEEeCCH
Confidence 344555555542 2367999999974
No 260
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=24.50 E-value=56 Score=24.09 Aligned_cols=13 Identities=8% Similarity=0.276 Sum_probs=10.0
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|+++||--.
T Consensus 194 ~~~tiii~sH~~~ 206 (248)
T PRK09580 194 GKRSFIIVTHYQR 206 (248)
T ss_pred CCCEEEEEeCCHH
Confidence 3679999999843
No 261
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=24.43 E-value=1.3e+02 Score=22.58 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+.+.+.++.. ..+.+|++|||---
T Consensus 156 ~~~l~~~L~~~~~---~~g~tiiivsH~~~ 182 (251)
T PRK09544 156 QVALYDLIDQLRR---ELDCAVLMVSHDLH 182 (251)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEecCHH
Confidence 3344445554422 22678999999843
No 262
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=24.42 E-value=1.6e+02 Score=21.94 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 37 ES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
-.+..+..++.+++..+. +.+.+|++++|-.
T Consensus 113 ~~yg~~~~~fl~~l~~L~----~~g~nII~tAhe~ 143 (220)
T TIGR01618 113 QHYQKLDLWFLDLLTVLK----ESNKNIYATAWEL 143 (220)
T ss_pred ccHHHHHHHHHHHHHHHH----hCCCcEEEEEeec
Confidence 357778888888888873 3688999999985
No 263
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=24.42 E-value=67 Score=24.06 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=25.0
Q ss_pred CCCCCCCC-HHHHHH--HHHHHHHHhhchhccCCCeEEEEeehHHHHH
Q 032238 31 IPPPNGES-LEMCSK--QAVAYFREHIEPQLQSGKHVMVAAHGNSLRS 75 (144)
Q Consensus 31 ~~~pgGES-~~~~~~--Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ 75 (144)
+-.|||-. ..++.+ .+.+.+.+.. ..++-|..||||..+-+
T Consensus 98 v~iPGG~g~~~dl~~~~~l~~ll~~f~----~~gK~iaAIChgp~~L~ 141 (231)
T cd03147 98 FFVAGGHGTLFDFPHATNLQKIAQQIY----ANGGVVAAVCHGPAILA 141 (231)
T ss_pred EEECCCCchhhhcccCHHHHHHHHHHH----HcCCEEEEEChHHHHHH
Confidence 35688843 344432 3444454442 45789999999986443
No 264
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=24.36 E-value=88 Score=24.69 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 36 GESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 36 GES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.|.-.+..++....+..++. ++ .=+|||||.
T Consensus 21 ae~Q~~~v~~ta~~i~~l~~----~g-~e~VitHGN 51 (312)
T COG0549 21 AEAQYEAVKITAEQIADLIA----SG-YEVVITHGN 51 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cC-CeEEEEcCC
Confidence 45555666666666666654 22 458999984
No 265
>PRK06635 aspartate kinase; Reviewed
Probab=24.30 E-value=99 Score=24.91 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=19.0
Q ss_pred CCCCHH--HHHHHHHHHHHHhhchhccCCCeEEEEeeh--HHHHHHHH
Q 032238 35 NGESLE--MCSKQAVAYFREHIEPQLQSGKHVMVAAHG--NSLRSIIM 78 (144)
Q Consensus 35 gGES~~--~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG--~vir~ll~ 78 (144)
||.++. +..+++.+.+..+. ..+..++||.|| ++...++.
T Consensus 9 GGs~l~~~~~~~~~~~~i~~~~----~~g~~~vvV~sg~~~~~~~l~~ 52 (404)
T PRK06635 9 GGTSVGDVERIKRVAERVKAEV----EAGHQVVVVVSAMGGTTDELLD 52 (404)
T ss_pred CCcccCCHHHHHHHHHHHHHHH----HcCCCEEEEEeCCCCcHHHHHH
Confidence 454443 23444444444432 235566666664 34444433
No 266
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=24.11 E-value=65 Score=24.00 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+.+...+.++. ..+.+|+++||---
T Consensus 169 ~~~l~~~L~~~~----~~~~tvi~~sH~~~ 194 (248)
T PRK03695 169 QAALDRLLSELC----QQGIAVVMSSHDLN 194 (248)
T ss_pred HHHHHHHHHHHH----hCCCEEEEEecCHH
Confidence 334444444442 23678999999844
No 267
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.10 E-value=2.1e+02 Score=21.80 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEE---eehHHHHHHHHHHh
Q 032238 34 PNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVA---AHGNSLRSIIMYLD 81 (144)
Q Consensus 34 pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvV---sHG~vir~ll~~l~ 81 (144)
|+-++-.++.+++..+++.+ +++.++| +||.++.-++..++
T Consensus 157 ~~~~t~~~~~~~~~~~~~~~-------Gk~pv~v~~d~pgfi~nRi~~~~~ 200 (287)
T PRK08293 157 GHPGTDPEVFDTVVAFAKAI-------GMVPIVLKKEQPGYILNSLLVPFL 200 (287)
T ss_pred CCCCCCHHHHHHHHHHHHHc-------CCeEEEecCCCCCHhHHHHHHHHH
Confidence 56678889999999988875 3454544 79998855555443
No 268
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=24.05 E-value=84 Score=24.90 Aligned_cols=18 Identities=11% Similarity=0.364 Sum_probs=15.6
Q ss_pred eEEEEeehHHHHHHHHHH
Q 032238 63 HVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 63 ~VLvVsHG~vir~ll~~l 80 (144)
.|+|+|||..-..++..+
T Consensus 4 ~IIiasHG~~A~gl~~s~ 21 (322)
T PRK15088 4 AIIIGTHGWAAEQLLKTA 21 (322)
T ss_pred eEEEEeCHHHHHHHHHHH
Confidence 589999999998888765
No 269
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=24.03 E-value=1.4e+02 Score=16.30 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 38 S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
|..++.+++...++.+.. .+ .|+|.-||..
T Consensus 3 ~~te~r~~~~~~l~~v~~----~~-pv~It~~g~~ 32 (52)
T TIGR01552 3 SLSEAKNKLGELLKRVRD----GE-PVTITKRGRP 32 (52)
T ss_pred CHHHHHHHHHHHHHHHHC----CC-CEEEEECCcc
Confidence 567888888888888732 23 6777777764
No 270
>COG3530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.95 E-value=28 Score=20.85 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=18.5
Q ss_pred cccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCC
Q 032238 2 YGELQGLNKQETAERYGKELVHGWRRSYDIPPPNGE 37 (144)
Q Consensus 2 ~G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGE 37 (144)
||.+.|+-..++ |++ +..|+.... +|.|+
T Consensus 16 FGKYqGR~liDL----Pe~-YLlWFarkg--FP~G~ 44 (71)
T COG3530 16 FGKYQGRVLIDL----PEE-YLLWFARKG--FPPGK 44 (71)
T ss_pred cccccceeeecC----CHH-HHHHHHHhC--CCchH
Confidence 899999888776 444 456765433 34454
No 271
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=23.92 E-value=1.3e+02 Score=25.35 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 35 NGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 35 gGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
.-|-..+...+....++.... .+.++.|+||+|.
T Consensus 157 ~~e~rd~yl~kLK~~iE~~~~--~~G~kkVvlisHS 190 (473)
T KOG2369|consen 157 NSEERDQYLSKLKKKIETMYK--LNGGKKVVLISHS 190 (473)
T ss_pred ChhHHHHHHHHHHHHHHHHHH--HcCCCceEEEecC
Confidence 345566777777777777643 3566999999995
No 272
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=23.88 E-value=1.1e+02 Score=23.46 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 38 SLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 38 S~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
.+.+=.+|+..+++.. ..|.+|.+||.|..-
T Consensus 54 ~m~~Ei~Ra~~AielA-----~~G~~ValVSsGDpg 84 (249)
T COG1010 54 GMREEIERAKEAIELA-----AEGRDVALVSSGDPG 84 (249)
T ss_pred CcHhHHHHHHHHHHHH-----hcCCeEEEEeCCCcc
Confidence 3566788999999875 357899999999653
No 273
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=23.84 E-value=2.1e+02 Score=20.65 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=15.6
Q ss_pred HHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 45 QAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 45 Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
++...+.++.. ..+.+|++|||--
T Consensus 160 ~l~~~l~~~~~---~~~~~iiiitH~~ 183 (204)
T cd03240 160 SLAEIIEERKS---QKNFQLIVITHDE 183 (204)
T ss_pred HHHHHHHHHHh---ccCCEEEEEEecH
Confidence 56666655521 2267899999973
No 274
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.75 E-value=2.4e+02 Score=20.98 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHH
Q 032238 34 PNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIM 78 (144)
Q Consensus 34 pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~ 78 (144)
|-|-=--.+++|..+.+..++. .-+=.++||||--...-+++
T Consensus 178 PTGGLDVSVQARLLDllrgLv~---~l~la~viVTHDl~VarLla 219 (258)
T COG4107 178 PTGGLDVSVQARLLDLLRGLVR---ELGLAVVIVTHDLAVARLLA 219 (258)
T ss_pred CCCCcchhhHHHHHHHHHHHHH---hcCceEEEEechhHHHHHhh
Confidence 3343445688999999999875 34567899999866544433
No 275
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=23.71 E-value=1.4e+02 Score=22.08 Aligned_cols=11 Identities=18% Similarity=0.290 Sum_probs=8.9
Q ss_pred CCeEEEEeehH
Q 032238 61 GKHVMVAAHGN 71 (144)
Q Consensus 61 ~~~VLvVsHG~ 71 (144)
+.+|+++||--
T Consensus 204 ~~tii~~sH~~ 214 (255)
T PRK11300 204 NVTVLLIEHDM 214 (255)
T ss_pred CCEEEEEeCCH
Confidence 67899999964
No 276
>PRK10908 cell division protein FtsE; Provisional
Probab=23.58 E-value=58 Score=23.65 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
.+++...+.++. ..+.+|+++||-
T Consensus 173 ~~~l~~~l~~~~----~~~~tiii~sH~ 196 (222)
T PRK10908 173 SEGILRLFEEFN----RVGVTVLMATHD 196 (222)
T ss_pred HHHHHHHHHHHH----HCCCEEEEEeCC
Confidence 344455555542 235688899986
No 277
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=23.46 E-value=2.1e+02 Score=24.65 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHhhhhCCCCCCCCCCCHHHHHHHHHH----------------------HHHHhhchhccCCCeEEEEeehHH
Q 032238 22 VHGWRRSYDIPPPNGESLEMCSKQAVA----------------------YFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 22 ~~~~~~~~~~~~pgGES~~~~~~Rv~~----------------------~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
...|.+..-.+..|||.-.=...|+.- .++-+.+ .-.++++++|||-.+
T Consensus 464 l~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~--~~~~kTll~vTHrL~ 534 (573)
T COG4987 464 LNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMVTHRLR 534 (573)
T ss_pred hhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH--HhcCCeEEEEecccc
Confidence 344554334456677777666666531 1222221 235889999999643
No 278
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=23.43 E-value=65 Score=24.01 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++. ..+.+|+++||--
T Consensus 174 ~~~l~~~l~~l~----~~~~tiii~tH~~ 198 (255)
T PRK11231 174 QVELMRLMRELN----TQGKTVVTVLHDL 198 (255)
T ss_pred HHHHHHHHHHHH----HCCCEEEEEECCH
Confidence 444555555542 2367899999973
No 279
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.38 E-value=1.4e+02 Score=22.52 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++.. ..+.+|+++||--
T Consensus 178 ~~~l~~~l~~~~~---~~~~tiii~sH~~ 203 (271)
T PRK13632 178 KREIKKIMVDLRK---TRKKTLISITHDM 203 (271)
T ss_pred HHHHHHHHHHHHH---hcCcEEEEEEech
Confidence 4445555555421 2347999999984
No 280
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=23.27 E-value=56 Score=23.74 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++. ..+.+|+++||--
T Consensus 160 ~~~l~~~L~~~~----~~~~tiii~sH~~ 184 (223)
T TIGR03740 160 IQELRELIRSFP----EQGITVILSSHIL 184 (223)
T ss_pred HHHHHHHHHHHH----HCCCEEEEEcCCH
Confidence 344555555542 2367899999963
No 281
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=23.18 E-value=96 Score=21.92 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHHHHHHHHHHhC
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYLDK 82 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l~~ 82 (144)
-.++.+++++.. ..++.|..++||..+-+-...+.|
T Consensus 90 ~~~l~~~l~~~~----~~~~~i~aic~G~~~La~agll~g 125 (195)
T cd03138 90 NPALIAWLRRQH----ANGATVAAACTGVFLLAEAGLLDG 125 (195)
T ss_pred cHHHHHHHHHHH----HcCCEEEEecHHHHHHHHccCcCC
Confidence 356666666642 457899999999987655554444
No 282
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=23.18 E-value=2.1e+02 Score=22.10 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=20.9
Q ss_pred CCCeEEEEeehHHHHHHHHHHhCCC
Q 032238 60 SGKHVMVAAHGNSLRSIIMYLDKLT 84 (144)
Q Consensus 60 ~~~~VLvVsHG~vir~ll~~l~~~~ 84 (144)
.+++|||+.=||+-|+++..+....
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g 150 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHG 150 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCC
Confidence 3578999999999999999886544
No 283
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.15 E-value=61 Score=24.03 Aligned_cols=12 Identities=8% Similarity=0.296 Sum_probs=9.3
Q ss_pred CCeEEEEeehHH
Q 032238 61 GKHVMVAAHGNS 72 (144)
Q Consensus 61 ~~~VLvVsHG~v 72 (144)
+.+|++|||---
T Consensus 195 ~~tiiivtH~~~ 206 (250)
T PRK14245 195 DYTIVIVTHNMQ 206 (250)
T ss_pred CCeEEEEeCCHH
Confidence 578999999643
No 284
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=23.10 E-value=3.4e+02 Score=20.52 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=18.1
Q ss_pred CCeEEEEeehHHHHHHHHHHhCCCc
Q 032238 61 GKHVMVAAHGNSLRSIIMYLDKLTS 85 (144)
Q Consensus 61 ~~~VLvVsHG~vir~ll~~l~~~~~ 85 (144)
.+-++.++|-.+|-.|++.| |+..
T Consensus 289 ~k~~~~s~HD~tl~~ll~~L-gl~~ 312 (347)
T PF00328_consen 289 PKLVLYSGHDTTLMPLLSAL-GLDN 312 (347)
T ss_dssp CSEEEEEE-HHHHHHHHHHT-TCTT
T ss_pred ceEEEEecCHHHHHHHHHHh-CCCc
Confidence 35688999999999988866 6554
No 285
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=22.95 E-value=67 Score=23.94 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++. ..+.+|+++||--
T Consensus 173 ~~~l~~~l~~~~----~~~~tiii~sH~~ 197 (256)
T TIGR03873 173 QLETLALVRELA----ATGVTVVAALHDL 197 (256)
T ss_pred HHHHHHHHHHHH----hcCCEEEEEeCCH
Confidence 344445555442 2357899999963
No 286
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=22.87 E-value=1.1e+02 Score=18.09 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHh
Q 032238 37 ESLEMCSKQAVAYFREH 53 (144)
Q Consensus 37 ES~~~~~~Rv~~~l~~l 53 (144)
||..++.+|+..+-.++
T Consensus 42 Es~~eVi~ki~~y~~~i 58 (60)
T PF06289_consen 42 ESVEEVIEKIIEYRRKI 58 (60)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 89999999999988775
No 287
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=22.78 E-value=43 Score=22.40 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=12.2
Q ss_pred EEEEeehHHHHHHHHH
Q 032238 64 VMVAAHGNSLRSIIMY 79 (144)
Q Consensus 64 VLvVsHG~vir~ll~~ 79 (144)
||+||+|.+.|.-++.
T Consensus 1 ILFvC~~N~cRS~mAE 16 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAE 16 (138)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred CEEEeCCCcchHHHHH
Confidence 7889999888775553
No 288
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=22.71 E-value=1.3e+02 Score=23.12 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+.+.+.++. ..+.+|+++||--
T Consensus 160 ~~~l~~~l~~~~----~~g~tvi~~sH~~ 184 (302)
T TIGR01188 160 RRAIWDYIRALK----EEGVTILLTTHYM 184 (302)
T ss_pred HHHHHHHHHHHH----hCCCEEEEECCCH
Confidence 344555555542 2478999999974
No 289
>PRK13530 arsenate reductase; Provisional
Probab=22.65 E-value=83 Score=21.26 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=14.7
Q ss_pred CeEEEEeehHHHHHHHHH
Q 032238 62 KHVMVAAHGNSLRSIIMY 79 (144)
Q Consensus 62 ~~VLvVsHG~vir~ll~~ 79 (144)
++||+||.|.+.|.-++.
T Consensus 4 ~~vLFvC~~N~cRS~mAE 21 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAE 21 (133)
T ss_pred CEEEEEcCCchhHHHHHH
Confidence 589999999999876654
No 290
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.63 E-value=1.5e+02 Score=21.94 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=8.9
Q ss_pred CCeEEEEeehH
Q 032238 61 GKHVMVAAHGN 71 (144)
Q Consensus 61 ~~~VLvVsHG~ 71 (144)
+.+|++|||--
T Consensus 191 ~~tiii~tH~~ 201 (246)
T PRK14269 191 NLSMIMVTHNM 201 (246)
T ss_pred CCEEEEEecCH
Confidence 67899999963
No 291
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.59 E-value=1.4e+02 Score=22.55 Aligned_cols=14 Identities=14% Similarity=0.014 Sum_probs=11.1
Q ss_pred CCCeEEEEeehHHH
Q 032238 60 SGKHVMVAAHGNSL 73 (144)
Q Consensus 60 ~~~~VLvVsHG~vi 73 (144)
.+.+|++|||---.
T Consensus 190 ~g~tiil~sH~~~~ 203 (277)
T PRK13642 190 YQLTVLSITHDLDE 203 (277)
T ss_pred cCCEEEEEeCCHHH
Confidence 36799999998655
No 292
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=22.49 E-value=81 Score=24.17 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=9.2
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 186 ~~~tii~isH~~ 197 (275)
T cd03289 186 ADCTVILSEHRI 197 (275)
T ss_pred CCCEEEEEECCH
Confidence 367888899884
No 293
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=22.48 E-value=65 Score=23.72 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
.+++.+.+.++. ..+.+|++|||---
T Consensus 175 ~~~l~~~l~~~~----~~g~tii~itH~~~ 200 (226)
T cd03270 175 NDRLIETLKRLR----DLGNTVLVVEHDED 200 (226)
T ss_pred HHHHHHHHHHHH----hCCCEEEEEEeCHH
Confidence 444555555542 23678999999853
No 294
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.38 E-value=62 Score=23.26 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=9.1
Q ss_pred CCeEEEEeehHH
Q 032238 61 GKHVMVAAHGNS 72 (144)
Q Consensus 61 ~~~VLvVsHG~v 72 (144)
+.+|++|||---
T Consensus 179 ~~tii~vsH~~~ 190 (211)
T cd03264 179 DRIVILSTHIVE 190 (211)
T ss_pred CCEEEEEcCCHH
Confidence 478999999643
No 295
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=22.36 E-value=3e+02 Score=19.61 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHhhchhccCCCeEEEEee-hHHHHHHHHHHh
Q 032238 37 ESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAH-GNSLRSIIMYLD 81 (144)
Q Consensus 37 ES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH-G~vir~ll~~l~ 81 (144)
++..++.+.+.+|+.+=++ .++.|++|+. ......+...|.
T Consensus 27 ~~~~e~~~~~~~Fi~~GL~----~ge~~l~v~~~~~~~~~l~~~L~ 68 (191)
T PF14417_consen 27 DDEEELLEVLVPFIREGLA----RGERCLYVAPDPRRVEELRDELR 68 (191)
T ss_pred CCHHHHHHHHHHHHHHHHH----CCCeEEEEECCCCCHHHHHHHHH
Confidence 6889999999999988654 4778888888 555555656553
No 296
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=22.16 E-value=1.1e+02 Score=25.12 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=16.5
Q ss_pred CCeEEEEeehHHHHHHHHHHhCCC
Q 032238 61 GKHVMVAAHGNSLRSIIMYLDKLT 84 (144)
Q Consensus 61 ~~~VLvVsHG~vir~ll~~l~~~~ 84 (144)
.+.-++|||||.....=+...|.|
T Consensus 340 p~v~~fitHgG~~s~~Ea~~~gvP 363 (500)
T PF00201_consen 340 PRVKLFITHGGLNSTQEALYHGVP 363 (500)
T ss_dssp TTEEEEEES--HHHHHHHHHCT--
T ss_pred ccceeeeeccccchhhhhhhccCC
Confidence 345699999999998888888876
No 297
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=22.13 E-value=1.2e+02 Score=21.91 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=23.5
Q ss_pred EEEeehHHHHHHHHHHhCCCccceeeeeecCCcE-EEEEEcC
Q 032238 65 MVAAHGNSLRSIIMYLDKLTSQEVINLELSTGIP-LLYIYKE 105 (144)
Q Consensus 65 LvVsHG~vir~ll~~l~~~~~~~~~~~~~~~g~~-~i~~~~~ 105 (144)
+|-.||.++.-++..+...+. .+..-.++|+.. .++.|.+
T Consensus 103 ~v~~hgcT~e~I~~~F~~ys~-~~~~e~~~~~eFD~~i~Fed 143 (175)
T PF12993_consen 103 LVGKHGCTLEDILELFHKYSD-NVHCEEMDNGEFDYLIYFED 143 (175)
T ss_pred HHhcCCcCHHHHHHHHHHhcC-CeEEEeecCCCCCEEEEecC
Confidence 556689888888887765543 333334555543 3444443
No 298
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=22.02 E-value=71 Score=23.71 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=8.4
Q ss_pred CCeEEEEeehH
Q 032238 61 GKHVMVAAHGN 71 (144)
Q Consensus 61 ~~~VLvVsHG~ 71 (144)
+.+|++|||--
T Consensus 198 ~~tvii~tH~~ 208 (253)
T PRK14242 198 RYTIIIVTHNM 208 (253)
T ss_pred CCeEEEEEecH
Confidence 46888999963
No 299
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=21.91 E-value=81 Score=22.74 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=9.1
Q ss_pred CeEEEEeehHH
Q 032238 62 KHVMVAAHGNS 72 (144)
Q Consensus 62 ~~VLvVsHG~v 72 (144)
.+|++|||---
T Consensus 190 ~tii~~sH~~~ 200 (220)
T cd03245 190 KTLIIITHRPS 200 (220)
T ss_pred CEEEEEeCCHH
Confidence 68999999864
No 300
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.85 E-value=71 Score=24.11 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhchhccCCCeEEEEeehHH
Q 032238 44 KQAVAYFREHIEPQLQSGKHVMVAAHGNS 72 (144)
Q Consensus 44 ~Rv~~~l~~l~~~~~~~~~~VLvVsHG~v 72 (144)
..+.+.+.++. ..+.+|++|||---
T Consensus 173 ~~l~~~l~~~~----~~g~tii~vtH~~~ 197 (271)
T PRK13638 173 TQMIAIIRRIV----AQGNHVIISSHDID 197 (271)
T ss_pred HHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 34444454442 23678999999743
No 301
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=21.84 E-value=72 Score=23.62 Aligned_cols=11 Identities=9% Similarity=0.317 Sum_probs=8.9
Q ss_pred CCeEEEEeehH
Q 032238 61 GKHVMVAAHGN 71 (144)
Q Consensus 61 ~~~VLvVsHG~ 71 (144)
+.+|++|||--
T Consensus 195 ~~tiii~sH~~ 205 (250)
T PRK14240 195 DYTIVIVTHNM 205 (250)
T ss_pred CCeEEEEEeCH
Confidence 56899999973
No 302
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=21.81 E-value=69 Score=23.68 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=9.6
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|+++||--
T Consensus 193 ~~~tvi~~tH~~ 204 (250)
T PRK11264 193 EKRTMVIVTHEM 204 (250)
T ss_pred cCCEEEEEeCCH
Confidence 367899999974
No 303
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=21.79 E-value=1.5e+02 Score=24.13 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=10.3
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|++|||---
T Consensus 214 ~~~TII~iTHdl~ 226 (382)
T TIGR03415 214 LNKTIIFVSHDLD 226 (382)
T ss_pred cCCEEEEEeCCHH
Confidence 3789999999743
No 304
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.65 E-value=66 Score=24.06 Aligned_cols=11 Identities=9% Similarity=0.317 Sum_probs=8.4
Q ss_pred CCeEEEEeehH
Q 032238 61 GKHVMVAAHGN 71 (144)
Q Consensus 61 ~~~VLvVsHG~ 71 (144)
+.+|++|||--
T Consensus 203 ~~tiiivsH~~ 213 (258)
T PRK14268 203 DYTIVIVTHNM 213 (258)
T ss_pred CCEEEEEECCH
Confidence 46888888864
No 305
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=21.58 E-value=29 Score=21.46 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=15.2
Q ss_pred CCHHHHHHHhhHHHHHhhhhCCCCCCCCCC
Q 032238 8 LNKQETAERYGKELVHGWRRSYDIPPPNGE 37 (144)
Q Consensus 8 ~~~~ei~~~~p~~~~~~~~~~~~~~~pgGE 37 (144)
+-.+-|.+..|. ++.|..|- +.||+||
T Consensus 37 ~A~~~I~~~~p~--Y~PWf~pl-wePpsgE 63 (74)
T PF02553_consen 37 QAEEMIEEIDPD--YEPWFEPL-WEPPSGE 63 (74)
T ss_pred HHHHHHHHhCCC--CCcccccc-ccCCCch
Confidence 334444454443 67788764 3467775
No 306
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=21.56 E-value=1.6e+02 Score=22.01 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=9.6
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+-++|+|||--
T Consensus 179 ~~~TllmVTH~~ 190 (231)
T COG3840 179 RKMTLLMVTHHP 190 (231)
T ss_pred hCCEEEEEeCCH
Confidence 456999999973
No 307
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=21.54 E-value=2e+02 Score=17.43 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.6
Q ss_pred CCCeEEEEeehHHHHHHHHHHhCC
Q 032238 60 SGKHVMVAAHGNSLRSIIMYLDKL 83 (144)
Q Consensus 60 ~~~~VLvVsHG~vir~ll~~l~~~ 83 (144)
.+++++|+..|.+-+.+...+...
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc
Confidence 468999999999999998888764
No 308
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=21.49 E-value=73 Score=23.32 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=9.8
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|+++||---
T Consensus 186 ~~~tiii~sH~~~ 198 (237)
T cd03252 186 AGRTVIIIAHRLS 198 (237)
T ss_pred CCCEEEEEeCCHH
Confidence 3678999999653
No 309
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=21.48 E-value=71 Score=19.74 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=16.1
Q ss_pred EEEeehHHHHHHHHHHhCC
Q 032238 65 MVAAHGNSLRSIIMYLDKL 83 (144)
Q Consensus 65 LvVsHG~vir~ll~~l~~~ 83 (144)
---++||++.+|+.+++.-
T Consensus 15 ~~~~sGG~vTaLl~~lLe~ 33 (82)
T PF04422_consen 15 EKSQSGGVVTALLAYLLES 33 (82)
T ss_pred ccCCcHHHHHHHHHHHHHc
Confidence 4578999999999999864
No 310
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.46 E-value=1.6e+02 Score=22.53 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=9.9
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
.+.+|++|||--
T Consensus 193 ~g~til~vtHd~ 204 (288)
T PRK13643 193 SGQTVVLVTHLM 204 (288)
T ss_pred CCCEEEEEecCH
Confidence 367999999984
No 311
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=21.45 E-value=91 Score=23.73 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHhhchhccCCCeEEEEeehHHHHH
Q 032238 36 GESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAHGNSLRS 75 (144)
Q Consensus 36 GES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vir~ 75 (144)
+-|..+..+=+..+.+... .-.+.|++++|||.|..
T Consensus 197 ~~Sl~~~vel~~~~~~aar----~v~kd~i~l~~GGPi~~ 232 (276)
T COG5564 197 ALSLADCVELIELAAEAAR----GVRKDVIPLCHGGPISM 232 (276)
T ss_pred ccCHHHHHHHHHHHHHHHh----hhhhceeeeccCCCcCC
Confidence 3577777666666555542 23468999999999854
No 312
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.42 E-value=77 Score=23.45 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=8.5
Q ss_pred CCeEEEEeehH
Q 032238 61 GKHVMVAAHGN 71 (144)
Q Consensus 61 ~~~VLvVsHG~ 71 (144)
+.+|++|||--
T Consensus 195 ~~tili~sH~~ 205 (250)
T PRK14262 195 NYTIVIVTHNI 205 (250)
T ss_pred CcEEEEEeCCH
Confidence 46899999963
No 313
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=21.41 E-value=1.6e+02 Score=22.85 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=22.2
Q ss_pred CCeEEEEeehHHHHHHHHHHhCCCcc
Q 032238 61 GKHVMVAAHGNSLRSIIMYLDKLTSQ 86 (144)
Q Consensus 61 ~~~VLvVsHG~vir~ll~~l~~~~~~ 86 (144)
+++|||+.-||+-|+++..+......
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~ 151 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAK 151 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 57899999999999999998765543
No 314
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=21.38 E-value=1.2e+02 Score=23.86 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
....+.-+.++- ..-++||++|||-
T Consensus 171 R~~lQ~e~~~lq---~~l~kTivfVTHD 195 (309)
T COG1125 171 RKQLQEEIKELQ---KELGKTIVFVTHD 195 (309)
T ss_pred HHHHHHHHHHHH---HHhCCEEEEEecC
Confidence 334455555552 2568999999997
No 315
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=21.31 E-value=1e+02 Score=17.38 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.0
Q ss_pred cchhhHHHHHHHHHHhhh
Q 032238 124 AYTETLALYRQELDEMSQ 141 (144)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~ 141 (144)
+-+++|..|.+.|..|..
T Consensus 6 ~ti~RL~~Y~r~L~~l~~ 23 (50)
T PF06971_consen 6 ATIRRLPLYLRYLEQLKE 23 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 347899999999998875
No 316
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.23 E-value=53 Score=20.45 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=8.4
Q ss_pred EEEEeehHHH
Q 032238 64 VMVAAHGNSL 73 (144)
Q Consensus 64 VLvVsHG~vi 73 (144)
||+|+||..-
T Consensus 2 lllv~HGs~~ 11 (101)
T cd03409 2 LLVVGHGSPY 11 (101)
T ss_pred EEEEECCCCC
Confidence 7999999765
No 317
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.20 E-value=1.7e+02 Score=22.22 Aligned_cols=11 Identities=55% Similarity=0.779 Sum_probs=9.6
Q ss_pred CCeEEEEeehH
Q 032238 61 GKHVMVAAHGN 71 (144)
Q Consensus 61 ~~~VLvVsHG~ 71 (144)
+.+|++|||--
T Consensus 188 g~tili~tH~~ 198 (274)
T PRK13647 188 GKTVIVATHDV 198 (274)
T ss_pred CCEEEEEeCCH
Confidence 67999999984
No 318
>PF01359 Transposase_1: Transposase (partial DDE domain); InterPro: IPR001888 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the mariner transposase []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3HOT_B 3HOS_A 3K9K_B 3F2K_B 3K9J_B 2F7T_A.
Probab=21.17 E-value=78 Score=19.68 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHhhhh
Q 032238 126 TETLALYRQELDEMSQR 142 (144)
Q Consensus 126 ~~~~~~~~~~~~~~~~~ 142 (144)
+-+.++|.|.|++|.+.
T Consensus 53 TIts~~Y~~ql~~l~~~ 69 (81)
T PF01359_consen 53 TITSEYYCQQLDKLKQA 69 (81)
T ss_dssp --SHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH
Confidence 45678898888888653
No 319
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=21.13 E-value=1.4e+02 Score=24.97 Aligned_cols=13 Identities=8% Similarity=0.266 Sum_probs=10.3
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|++|||---
T Consensus 477 ~g~tvi~vsHd~~ 489 (520)
T TIGR03269 477 MEQTFIIVSHDMD 489 (520)
T ss_pred cCcEEEEEeCCHH
Confidence 3678999999843
No 320
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.13 E-value=75 Score=23.20 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=9.5
Q ss_pred CCeEEEEeehHH
Q 032238 61 GKHVMVAAHGNS 72 (144)
Q Consensus 61 ~~~VLvVsHG~v 72 (144)
+.+|++|||---
T Consensus 186 ~~tiii~sh~~~ 197 (236)
T cd03253 186 GRTTIVIAHRLS 197 (236)
T ss_pred CCEEEEEcCCHH
Confidence 678999999753
No 321
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=20.98 E-value=1.3e+02 Score=22.58 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 40 EMCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 40 ~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+...++.+-+.++. ..+..++||++|+
T Consensus 20 ~~~i~~~~~~i~~~~----~~~~~viiV~sg~ 47 (251)
T cd04242 20 LGRLASLVEQIAELR----NQGKEVILVSSGA 47 (251)
T ss_pred HHHHHHHHHHHHHHH----HCCCeEEEEecCc
Confidence 344555555555542 2355688888763
No 322
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.98 E-value=1.3e+02 Score=23.80 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
-++.|+.+|+++..+ .-+-+||+-||-
T Consensus 190 ~aq~~ir~Flke~n~---~~~aTVllTTH~ 216 (325)
T COG4586 190 NAQANIREFLKEYNE---ERQATVLLTTHI 216 (325)
T ss_pred hHHHHHHHHHHHHHH---hhCceEEEEecc
Confidence 457789999999754 446799999995
No 323
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.92 E-value=80 Score=22.94 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=9.6
Q ss_pred CCeEEEEeehHH
Q 032238 61 GKHVMVAAHGNS 72 (144)
Q Consensus 61 ~~~VLvVsHG~v 72 (144)
+.+|++|||--.
T Consensus 188 ~~tii~~sh~~~ 199 (229)
T cd03254 188 GRTSIIIAHRLS 199 (229)
T ss_pred CCEEEEEecCHH
Confidence 678999999754
No 324
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=20.91 E-value=1.5e+02 Score=23.71 Aligned_cols=29 Identities=7% Similarity=0.000 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhchhccC-CCeEEEEeehHHH
Q 032238 42 CSKQAVAYFREHIEPQLQS-GKHVMVAAHGNSL 73 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~-~~~VLvVsHG~vi 73 (144)
..+.+.+.+.++.. .. +.++++|||---.
T Consensus 172 ~r~~l~~~l~~l~~---~~~g~til~vTHd~~e 201 (362)
T TIGR03258 172 IRANMREEIAALHE---ELPELTILCVTHDQDD 201 (362)
T ss_pred HHHHHHHHHHHHHH---hCCCCEEEEEeCCHHH
Confidence 34445555555432 22 6799999998644
No 325
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=20.82 E-value=1.9e+02 Score=20.67 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
...+.+...+.++. ..+.+|+++||--
T Consensus 138 ~~~~~l~~~L~~~~----~~~~tiii~sh~~ 164 (200)
T cd03217 138 DALRLVAEVINKLR----EEGKSVLIITHYQ 164 (200)
T ss_pred HHHHHHHHHHHHHH----HCCCEEEEEecCH
Confidence 34556666666652 2367999999974
No 326
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=20.72 E-value=1.9e+02 Score=22.87 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=29.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhchhccCCCeEEEEee---hHHHHHHHH
Q 032238 31 IPPPNGESLEMCSKQAVAYFREHIEPQLQSGKHVMVAAH---GNSLRSIIM 78 (144)
Q Consensus 31 ~~~pgGES~~~~~~Rv~~~l~~l~~~~~~~~~~VLvVsH---G~vir~ll~ 78 (144)
+.+..|+|..++.+++...++++ ..++.|||.|- |.+....+.
T Consensus 34 v~~~~~~~~~~~~~~l~~~i~~~-----~~~d~vlILtDl~GGSP~N~a~~ 79 (322)
T PRK15088 34 IDFVPGENAETLIEKYNAQLAKL-----DTSKGVLFLVDTWGGSPFNAASR 79 (322)
T ss_pred EEccCCCCHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCHHHHHHH
Confidence 34567899999999999999886 22445777764 344444333
No 327
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=20.69 E-value=1.5e+02 Score=23.96 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehHHH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGNSL 73 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~vi 73 (144)
.+.+...+.++.. ..+.++++|||----
T Consensus 185 r~~l~~~l~~l~~---~~g~tii~vTHd~~e 212 (377)
T PRK11607 185 RDRMQLEVVDILE---RVGVTCVMVTHDQEE 212 (377)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEcCCHHH
Confidence 3334444545432 236789999997553
No 328
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.33 E-value=74 Score=24.96 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=10.3
Q ss_pred CCCeEEEEeehHH
Q 032238 60 SGKHVMVAAHGNS 72 (144)
Q Consensus 60 ~~~~VLvVsHG~v 72 (144)
.+.+|++|||---
T Consensus 225 ~g~TiiivtHd~~ 237 (320)
T PRK13631 225 NNKTVFVITHTME 237 (320)
T ss_pred CCCEEEEEecCHH
Confidence 3679999999843
No 329
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.29 E-value=34 Score=22.05 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCC
Q 032238 6 QGLNKQETAERYGKELVHGWRRSYDIPPPNGE 37 (144)
Q Consensus 6 EG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGE 37 (144)
+++-.+-|.+..|+ ++.|..|.. .||+||
T Consensus 37 D~~A~~~I~ei~p~--Y~PWf~Plw-EPpsGE 65 (91)
T TIGR01165 37 DGQAEEVIEEIGPD--YKPWFSPLW-EPPSGE 65 (91)
T ss_pred chHHHHHHHHhCCC--Ccccccccc-cCCcch
Confidence 33444445455553 677887643 456775
No 330
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=20.28 E-value=1.6e+02 Score=22.74 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 42 CSKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 42 ~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
....+.+.+..+.. ..+.+|++.||-
T Consensus 171 ~~~~~~~~l~~l~~---~g~~tvlissH~ 196 (293)
T COG1131 171 SRREIWELLRELAK---EGGVTILLSTHI 196 (293)
T ss_pred HHHHHHHHHHHHHh---CCCcEEEEeCCc
Confidence 34455666666532 233699999995
No 331
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=20.27 E-value=71 Score=24.84 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhchhccCCCeEEEEeehH
Q 032238 43 SKQAVAYFREHIEPQLQSGKHVMVAAHGN 71 (144)
Q Consensus 43 ~~Rv~~~l~~l~~~~~~~~~~VLvVsHG~ 71 (144)
.+.+...+.++. ..+.+|++|||--
T Consensus 201 ~~~l~~~l~~l~----~~g~tiiivtHd~ 225 (305)
T PRK13651 201 VKEILEIFDNLN----KQGKTIILVTHDL 225 (305)
T ss_pred HHHHHHHHHHHH----HCCCEEEEEeeCH
Confidence 334445555442 2478999999984
No 332
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=20.16 E-value=1.6e+02 Score=24.98 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=10.2
Q ss_pred CCCeEEEEeehH
Q 032238 60 SGKHVMVAAHGN 71 (144)
Q Consensus 60 ~~~~VLvVsHG~ 71 (144)
+++++++|||--
T Consensus 533 ~~~TvIiItHrl 544 (588)
T PRK11174 533 RRQTTLMVTHQL 544 (588)
T ss_pred CCCEEEEEecCh
Confidence 578999999985
No 333
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=20.16 E-value=33 Score=22.48 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=18.2
Q ss_pred ccCCCCCHHHHHHHhhHHHHHhhhhCCCCCCCCCC
Q 032238 3 GELQGLNKQETAERYGKELVHGWRRSYDIPPPNGE 37 (144)
Q Consensus 3 G~wEG~~~~ei~~~~p~~~~~~~~~~~~~~~pgGE 37 (144)
|--+++-.+-|.+..|+ ++.|..|.. .||+||
T Consensus 34 gGaD~~A~~~I~ei~p~--Y~PWf~Plw-EPPsGE 65 (100)
T PRK02898 34 GGADGQAEEAITEIAPD--YEPWFEPLW-EPPSGE 65 (100)
T ss_pred cCccHHHHHHHHHhCCC--Ccccccccc-cCCcch
Confidence 33344444455555553 678887643 467775
No 334
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=20.12 E-value=72 Score=25.19 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.1
Q ss_pred EEEeehHHHHHHHHHHhCCC
Q 032238 65 MVAAHGNSLRSIIMYLDKLT 84 (144)
Q Consensus 65 LvVsHG~vir~ll~~l~~~~ 84 (144)
++|+|||.....-+...|.|
T Consensus 307 ~~I~hgG~~t~~eal~~GvP 326 (401)
T cd03784 307 AVVHHGGAGTTAAALRAGVP 326 (401)
T ss_pred eeeecCCchhHHHHHHcCCC
Confidence 78999998877777777766
No 335
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=20.11 E-value=1.6e+02 Score=18.78 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=28.4
Q ss_pred eeeeecCCcEEEEEEc-CCceeecCCCCCCCccccccchhhHHHHHHHHHHhh
Q 032238 89 INLELSTGIPLLYIYK-EGRFMKRGSPVGPTEAGVYAYTETLALYRQELDEMS 140 (144)
Q Consensus 89 ~~~~~~~g~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (144)
..+.++.|.-. ..+| +++.+...+|..| .++-.+.+.|+-|+|||...+
T Consensus 29 kEf~lpsGkR~-D~id~~~k~IyELKPnNP--r~ik~G~kQl~~Y~~el~~~~ 78 (89)
T PF15650_consen 29 KEFRLPSGKRP-DFIDFETKIIYELKPNNP--RAIKRGLKQLENYKQELEKIY 78 (89)
T ss_pred eeeecCCCCcC-ccccCCcceEEEecCCCH--HHHHHHHHHHHHHHHHhcCcc
Confidence 34555655422 1222 2333433444444 567789999999999986543
No 336
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=20.11 E-value=1.5e+02 Score=17.95 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=13.2
Q ss_pred CCeEEEEeehHHHHHHH
Q 032238 61 GKHVMVAAHGNSLRSII 77 (144)
Q Consensus 61 ~~~VLvVsHG~vir~ll 77 (144)
++.|+|-+++|+-|+..
T Consensus 39 ~~pvlVHC~~G~gRtg~ 55 (105)
T smart00012 39 SGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCEEEEeCCCCChhhH
Confidence 56899999988876643
No 337
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=20.11 E-value=1.5e+02 Score=17.95 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=13.2
Q ss_pred CCeEEEEeehHHHHHHH
Q 032238 61 GKHVMVAAHGNSLRSII 77 (144)
Q Consensus 61 ~~~VLvVsHG~vir~ll 77 (144)
++.|+|-+++|+-|+..
T Consensus 39 ~~pvlVHC~~G~gRtg~ 55 (105)
T smart00404 39 SGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCEEEEeCCCCChhhH
Confidence 56899999988876643
No 338
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=20.11 E-value=1.9e+02 Score=21.99 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhchhccCCCeEEEEeeh
Q 032238 41 MCSKQAVAYFREHIEPQLQSGKHVMVAAHG 70 (144)
Q Consensus 41 ~~~~Rv~~~l~~l~~~~~~~~~~VLvVsHG 70 (144)
++..-|...+.++. ..|-|.+||||-
T Consensus 170 Elv~EVL~vm~~LA----~eGmTMivVTHE 195 (240)
T COG1126 170 ELVGEVLDVMKDLA----EEGMTMIIVTHE 195 (240)
T ss_pred HHHHHHHHHHHHHH----HcCCeEEEEech
Confidence 45555667777763 457899999997
No 339
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=20.03 E-value=95 Score=26.46 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=18.2
Q ss_pred HHHHHHhhchhccCCCeEEEEeehHHHHHHHHHH
Q 032238 47 VAYFREHIEPQLQSGKHVMVAAHGNSLRSIIMYL 80 (144)
Q Consensus 47 ~~~l~~l~~~~~~~~~~VLvVsHG~vir~ll~~l 80 (144)
..+|++.+. ...+ +|+||||- |.|+..+
T Consensus 189 i~WLe~~L~--~~~g-tviiVSHD---R~FLd~V 216 (530)
T COG0488 189 IEWLEDYLK--RYPG-TVIVVSHD---RYFLDNV 216 (530)
T ss_pred HHHHHHHHH--hCCC-cEEEEeCC---HHHHHHH
Confidence 456666554 2556 99999998 4555544
Done!