BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032241
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26291|UCRIA_PEA Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum
sativum GN=petC PE=2 SV=1
Length = 230
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 106/133 (79%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPD 62
SS++LS TPSQLCS K G+ CPS A LVKP RTQM + GMKI CQATSIPADRVPD
Sbjct: 2 SSTTLSPTTPSQLCSGKSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPD 61
Query: 63 MGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNT 122
M KR+ +NLLLLGA+SLPT MLVPY +F PPG GS+ GGT AKDA+GND++A +WL T
Sbjct: 62 MSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKT 121
Query: 123 HGPGDRTLTEGLK 135
H PGDRTLT+GLK
Sbjct: 122 HAPGDRTLTQGLK 134
>sp|P08980|UCRIA_SPIOL Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Spinacia oleracea GN=petC PE=1 SV=2
Length = 230
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 110/135 (81%), Gaps = 3/135 (2%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQ-MVTKNPM-GMKIKCQATSIPADRV 60
+S +LSSATPSQLCSSK GMF PS A L K R +++K + GMK+ CQATSIPAD V
Sbjct: 2 ASFTLSSATPSQLCSSKNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNV 60
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWL 120
PDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+ GGT AKDA+GND+IAA+WL
Sbjct: 61 PDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWL 120
Query: 121 NTHGPGDRTLTEGLK 135
TH PGDRTLT+GLK
Sbjct: 121 KTHAPGDRTLTQGLK 135
>sp|O49078|UCRIA_FRIAG Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Fritillaria agrestis GN=petC PE=2 SV=1
Length = 230
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 100/135 (74%)
Query: 1 MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRV 60
MAS++ ++ TPSQL ++K G + PSRA L K AR K + K+ CQATSIPADRV
Sbjct: 1 MASTTLSATPTPSQLSAAKNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRV 60
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWL 120
PDMGKRQ MNLLLLGA+SLPT ML+PY FF PP G GGG AKDA+GNDI+AA WL
Sbjct: 61 PDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWL 120
Query: 121 NTHGPGDRTLTEGLK 135
THGPGDRTL +GL+
Sbjct: 121 KTHGPGDRTLAQGLR 135
>sp|Q69S39|UCRIA_ORYSJ Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza
sativa subsp. japonica GN=petC PE=1 SV=1
Length = 225
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 93/136 (68%), Gaps = 6/136 (4%)
Query: 1 MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQA-TSIPADR 59
MAS++ +++ P+QLC S+ + P + R I CQA +SIPADR
Sbjct: 1 MASTALSTASNPTQLCRSRASLGKPVKGLGFGRERVPRTATT-----ITCQAASSIPADR 55
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMGKRQLMNLLLLGA+SLPT MLVPY FF P G G+AGGG AKD +GND++A +W
Sbjct: 56 VPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEW 115
Query: 120 LNTHGPGDRTLTEGLK 135
L THGP DRTLT+GLK
Sbjct: 116 LKTHGPNDRTLTQGLK 131
>sp|Q7X9A6|UCRIA_WHEAT Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Triticum aestivum GN=petC PE=2 SV=1
Length = 222
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 87/135 (64%), Gaps = 7/135 (5%)
Query: 1 MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRV 60
MAS++ +++ P+QLC ++ C KP + + + I C A SI ADRV
Sbjct: 1 MASTALSTASNPTQLCRTRASSLC-------KPVKGLGFGRERIPRNITCMAGSISADRV 53
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWL 120
PDM KR+LMNLLLLGA+SLPT MLVPY +F P G GS GG AKD +GNDI+ DWL
Sbjct: 54 PDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWL 113
Query: 121 NTHGPGDRTLTEGLK 135
THGP DRTL +GLK
Sbjct: 114 KTHGPNDRTLAQGLK 128
>sp|Q9ZR03|UCRIA_ARATH Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Arabidopsis thaliana GN=petC PE=1 SV=1
Length = 229
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/135 (65%), Positives = 106/135 (78%), Gaps = 4/135 (2%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPAR--TQMVTKNPMGMKIKCQATSIPADRV 60
+SSSLS AT QL SS+ + S VKP + QMV K +G++I CQA+SIPADRV
Sbjct: 2 ASSSLSPAT--QLGSSRSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRV 59
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWL 120
PDM KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G GGGT AKDA+GND++AA+WL
Sbjct: 60 PDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWL 119
Query: 121 NTHGPGDRTLTEGLK 135
THGPGDRTLT+GLK
Sbjct: 120 KTHGPGDRTLTQGLK 134
>sp|Q69GY7|UCRIA_SOLTU Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Solanum tuberosum GN=petC PE=2 SV=1
Length = 230
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 101/138 (73%), Gaps = 8/138 (5%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD 58
+SS+LS TPSQLCSSK G+ S+A LVKP + + + MG MK KC A SIPAD
Sbjct: 2 ASSTLSHVTPSQLCSSKSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPAD 58
Query: 59 -RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAA 117
RVPDM KR LMNLLLLGA++LPTG MLVPYATFFAPPG G GT AKDA GND++
Sbjct: 59 DRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVT 118
Query: 118 DWLNTHGPGDRTLTEGLK 135
+WL TH PG RTLT+GLK
Sbjct: 119 EWLKTHSPGTRTLTQGLK 136
>sp|Q02585|UCRIB_TOBAC Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic
OS=Nicotiana tabacum GN=petC2 PE=2 SV=1
Length = 228
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 104/138 (75%), Gaps = 10/138 (7%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD 58
+SS+LS T QLCSSK G+ S+ L+KP + + + +G MK+KC ATSIPAD
Sbjct: 2 ASSTLSPVT--QLCSSKSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPAD 56
Query: 59 -RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAA 117
RVPDM KR LMNLLLLGA+SLPT MLVPYATFFAPPG G GGT AKDA+GND+IA+
Sbjct: 57 DRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIAS 116
Query: 118 DWLNTHGPGDRTLTEGLK 135
+WL TH PG+RTLT+GLK
Sbjct: 117 EWLKTHPPGNRTLTQGLK 134
>sp|P30361|UCRIA_TOBAC Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic
OS=Nicotiana tabacum GN=petC1 PE=2 SV=2
Length = 228
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 102/138 (73%), Gaps = 10/138 (7%)
Query: 3 SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD 58
+SS+LS T QLCSSK G+ S+ LVKP + + + +G MK+KC ATSIPAD
Sbjct: 2 ASSTLSPVT--QLCSSKSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPAD 56
Query: 59 -RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAA 117
RVPDM KR LMNLLLLGA+SLPT MLVPY TFF PPG G GGT AKDA+GND+IA+
Sbjct: 57 DRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIAS 116
Query: 118 DWLNTHGPGDRTLTEGLK 135
+WL TH PG+RTLT+GLK
Sbjct: 117 EWLKTHPPGNRTLTQGLK 134
>sp|Q9SBN3|UCRIA_VOLCA Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Volvox carteri GN=petC PE=2 SV=1
Length = 206
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 33 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFF 92
P + Q ++ + ++ A S VPDM KR +MNL+LLG SLP G + + Y FF
Sbjct: 12 PCKAQATRRSRVMSVVRAAAVS---SEVPDMNKRNIMNLILLGGASLPVGSLALGYGAFF 68
Query: 93 APPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 135
PP G GG AKDA+GNDI A WL TH GDR+L++GLK
Sbjct: 69 VPPSSGGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLK 111
>sp|Q3AWL7|UCRI_SYNS9 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain CC9902) GN=petC PE=3 SV=1
Length = 178
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 54/83 (65%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T IP+ VP MG+RQ MNLL G+V+ L P A +F PP +GGGTTAKD +GN
Sbjct: 2 TQIPSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVARYFIPPKAAGSGGGTTAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
+ A WL+TH GDR+L +GLK
Sbjct: 62 VVTATGWLSTHPEGDRSLVQGLK 84
>sp|A5GRU8|UCRI_SYNR3 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain RCC307) GN=petC PE=3 SV=1
Length = 178
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 52/83 (62%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T I A VP MG+RQ MNLL G+V+ L P +F PP AGGGTTAKD +GN
Sbjct: 2 TQISAKDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPKASGAGGGTTAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
D+ A+ WL H GDR+L +GLK
Sbjct: 62 DVTASGWLADHKEGDRSLVQGLK 84
>sp|A5GMW1|UCRI_SYNPW Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain WH7803) GN=petC PE=3 SV=1
Length = 178
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 54/83 (65%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T +PA VP MG+RQ MNLL G+V+ L P +F PP +GGGT+AKD +GN
Sbjct: 2 TQMPAGDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGSGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
+ A+ WL+TH GDR+L +GLK
Sbjct: 62 AVTASGWLSTHPAGDRSLVQGLK 84
>sp|Q5CC93|UCRIA_CYAPA Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle
OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1
Length = 239
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 63/95 (66%), Gaps = 5/95 (5%)
Query: 48 IKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPP-GLGSAGGGTTA 106
+ C A S D VPDMGKR+LMNLLLLGA++ P P+ +F PP G AG G A
Sbjct: 59 VSCSAAS---DDVPDMGKRKLMNLLLLGAIAGPVAGAGGPFVSFLVPPKAGGGAGAGQAA 115
Query: 107 KDAIGNDIIAADWLNTHGPGDRTLTEGLK-DFSHL 140
KDA+GND+ + WL TH PGDR+L +GLK D ++L
Sbjct: 116 KDALGNDVKVSSWLETHKPGDRSLAQGLKGDATYL 150
>sp|P49728|UCRIA_CHLRE Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Chlamydomonas reinhardtii GN=petC PE=1 SV=1
Length = 206
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 30 LVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYA 89
+ PA+ + ++ + ++ A S VPDM KR +MNL+L G LP + + Y
Sbjct: 9 VAAPAKASAIRRSRVMPVVRAAAAS---SEVPDMNKRNIMNLILAGGAGLPITTLALGYG 65
Query: 90 TFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 135
FF PP G GGG AKDA+GNDI A +WL TH GDR+L++GLK
Sbjct: 66 AFFVPPSSGGGGGGQAAKDALGNDIKAGEWLKTHLAGDRSLSQGLK 111
>sp|Q3ALY0|UCRI_SYNSC Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain CC9605) GN=petC PE=3 SV=1
Length = 178
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + + VP MG+RQ MNLL G+V+ L P A +F PP +GGGT+AKD +GN
Sbjct: 2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPKAAGSGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
I A+ WL++H GDR+L +GLK
Sbjct: 62 PITASGWLSSHPEGDRSLVQGLK 84
>sp|P0C8N8|UCRI_THEEB Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus
elongatus (strain BP-1) GN=petC PE=1 SV=1
Length = 180
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G ++ L P +F PP G GGG AKDA+GNDI +++
Sbjct: 10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEY 69
Query: 120 LNTHGPGDRTLTEGLK 135
L H PGDR+L +G+K
Sbjct: 70 LAKHLPGDRSLAQGIK 85
>sp|P0C8N7|UCRI_SYNEL Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus
elongatus GN=petC PE=3 SV=1
Length = 180
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G ++ L P +F PP G GGG AKDA+GNDI +++
Sbjct: 10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEY 69
Query: 120 LNTHGPGDRTLTEGLK 135
L H PGDR+L +G+K
Sbjct: 70 LAKHLPGDRSLAQGIK 85
>sp|Q7V654|UCRI_PROMM Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9313) GN=petC PE=3 SV=2
Length = 178
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + + VP MG+RQ MNLL G+V+ L P +F PP +GGGT+AKD +GN
Sbjct: 2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
+ A+ WL H GDR+L +GLK
Sbjct: 62 SVTASGWLANHSDGDRSLVQGLK 84
>sp|A2C7F6|UCRI_PROM3 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9303) GN=petC PE=3 SV=1
Length = 178
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + + VP MG+RQ MNLL G+V+ L P +F PP +GGGT+AKD +GN
Sbjct: 2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
+ A+ WL H GDR+L +GLK
Sbjct: 62 SVTASGWLANHSDGDRSLVQGLK 84
>sp|Q0I872|UCRI_SYNS3 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain CC9311) GN=petC PE=3 SV=1
Length = 178
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 54/83 (65%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T +PA VP MG+RQ MNLL G+V+ L P A +F PP GGGT+AKD +GN
Sbjct: 2 TQMPASDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPRAAGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
+ A+ WL++H GDR+L +GLK
Sbjct: 62 SVTASGWLSSHAEGDRSLVQGLK 84
>sp|B0JXB7|UCRI_MICAN Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis
aeruginosa (strain NIES-843) GN=petC PE=3 SV=1
Length = 179
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 50/76 (65%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPD+G+RQ MNLL G ++ L P +F PP G GGG TAKDA+GND+I + +
Sbjct: 9 VPDLGRRQFMNLLTFGTITGVAAGALYPIVKYFIPPSAGGTGGGVTAKDALGNDVIVSQF 68
Query: 120 LNTHGPGDRTLTEGLK 135
L +H GDRTL +GLK
Sbjct: 69 LTSHNAGDRTLAQGLK 84
>sp|Q114L6|UCRI_TRIEI Cytochrome b6-f complex iron-sulfur subunit OS=Trichodesmium
erythraeum (strain IMS101) GN=petC PE=3 SV=1
Length = 179
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 51 QATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAI 110
QA P VP MG+RQ MNLL G V+ L P +F PP G +GGG TAKDA+
Sbjct: 3 QAEGTP--DVPSMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPSSGGSGGGVTAKDAL 60
Query: 111 GNDIIAADWLNTHGPGDRTLTEGLK 135
GNDII +++L H G+RTL +GLK
Sbjct: 61 GNDIIVSEFLANHNSGERTLAQGLK 85
>sp|P26292|UCRI_SYNP2 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=petC PE=3 SV=1
Length = 180
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 51/76 (67%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPD+G+RQ +NLL +G + L P +F PP G AGGG AKDA+GNDII +D+
Sbjct: 10 VPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPSSGGAGGGVIAKDALGNDIIVSDY 69
Query: 120 LNTHGPGDRTLTEGLK 135
L TH GDR+L +GLK
Sbjct: 70 LQTHTAGDRSLAQGLK 85
>sp|Q5CC92|UCRIB_CYAPA Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle
OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1
Length = 241
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 48 IKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPP-GLGSAGGGTTA 106
I C A S D VPDMGKR+LMNLLLLGA++ PT P+ +F PP G AG G A
Sbjct: 61 ISCSAAS---DEVPDMGKRKLMNLLLLGAIAGPTIGAGGPFVSFLVPPKSGGGAGAGQAA 117
Query: 107 KDAIGNDIIAADWLNTHGPGDRTLTEGLK-DFSHL 140
KDA GNDI WL T PGDR+L +GLK D ++L
Sbjct: 118 KDAAGNDIKVEKWLETXKPGDRSLAQGLKGDATYL 152
>sp|Q5N5B0|UCRI_SYNP6 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC
PE=3 SV=1
Length = 179
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 50/79 (63%)
Query: 57 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIA 116
A VP MG+RQ MNLL G+V+ L P +F PP G +GGG AKDA+GND++
Sbjct: 7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVL 66
Query: 117 ADWLNTHGPGDRTLTEGLK 135
+ +L H GDRTL +GLK
Sbjct: 67 SKFLADHNVGDRTLVQGLK 85
>sp|Q31NV7|UCRI_SYNE7 Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus
elongatus (strain PCC 7942) GN=petC PE=3 SV=1
Length = 179
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 50/79 (63%)
Query: 57 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIA 116
A VP MG+RQ MNLL G+V+ L P +F PP G +GGG AKDA+GND++
Sbjct: 7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVL 66
Query: 117 ADWLNTHGPGDRTLTEGLK 135
+ +L H GDRTL +GLK
Sbjct: 67 SKFLADHNVGDRTLVQGLK 85
>sp|Q46GW1|UCRI_PROMT Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain NATL2A) GN=petC PE=3 SV=1
Length = 178
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 49/76 (64%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VP MG+RQ MNLL G V+ L P A +F P G GGGT AKD +GN++ A+ W
Sbjct: 9 VPSMGRRQFMNLLTFGTVTGVALGALYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGW 68
Query: 120 LNTHGPGDRTLTEGLK 135
L+TH GDR+L +GLK
Sbjct: 69 LSTHPVGDRSLVQGLK 84
>sp|A2C0R9|UCRI_PROM1 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain NATL1A) GN=petC PE=3 SV=1
Length = 178
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 49/76 (64%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VP MG+RQ MNLL G V+ L P A +F P G GGGT AKD +GN++ A+ W
Sbjct: 9 VPSMGRRQFMNLLTFGTVTGVALGALYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGW 68
Query: 120 LNTHGPGDRTLTEGLK 135
L+TH GDR+L +GLK
Sbjct: 69 LSTHPVGDRSLVQGLK 84
>sp|Q93SX0|UCRIA_NOSS1 Cytochrome b6-f complex iron-sulfur subunit 1 OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=petC1 PE=1 SV=1
Length = 179
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G AGGGTTAKD +GND+ + +
Sbjct: 10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPAAGGAGGGTTAKDELGNDVSVSKF 69
Query: 120 LNTHGPGDRTLTEGLK 135
L +H GDRTL +GLK
Sbjct: 70 LESHNVGDRTLVQGLK 85
>sp|Q9L3P9|UCRIA_ANAVT Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3
SV=1
Length = 179
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G AGGGTTAKD +GND+ + +
Sbjct: 10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVSKF 69
Query: 120 LNTHGPGDRTLTEGLK 135
L +H GDRTL +GLK
Sbjct: 70 LESHNVGDRTLVQGLK 85
>sp|B8HNR1|UCRI_CYAP4 Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp.
(strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1
Length = 179
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 47/76 (61%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G+ + ML P +F PP G GGG AKDA+GNDI +D+
Sbjct: 10 VPDMGRRQFMNLLTFGSATGVALGMLYPVVRYFIPPASGGVGGGVVAKDALGNDISVSDF 69
Query: 120 LNTHGPGDRTLTEGLK 135
L H DR L +GLK
Sbjct: 70 LAKHPANDRALAQGLK 85
>sp|P26290|UCRIB_SYNY3 Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=petC2 PE=3 SV=2
Length = 180
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPD+G+RQ MNLL G ++ L P + PP G +GGG TAKDA+GND+ ++
Sbjct: 10 VPDLGRRQFMNLLTFGTITGVAAGALYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEF 69
Query: 120 LNTHGPGDRTLTEGLK 135
L +H GDR L +GLK
Sbjct: 70 LASHNAGDRVLAQGLK 85
>sp|Q7U566|UCRI_SYNPX Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain WH8102) GN=petC PE=3 SV=1
Length = 178
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 52/83 (62%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + + VP MG+RQ MNLL G+V+ L P +F PP AGGGTTAKD +GN
Sbjct: 2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGAGGGTTAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
I A WL++H GDR+L +GLK
Sbjct: 62 AITATGWLSSHPEGDRSLVQGLK 84
>sp|A3PBI5|UCRI_PROM0 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9301) GN=petC PE=3 SV=1
Length = 178
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 49/83 (59%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
I WL TH GDR+L +GLK
Sbjct: 62 PITKTGWLATHQAGDRSLVQGLK 84
>sp|A2BPU5|UCRI_PROMS Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain AS9601) GN=petC PE=3 SV=1
Length = 178
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 49/83 (59%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
I WL TH GDR+L +GLK
Sbjct: 62 PITKTGWLATHQAGDRSLVQGLK 84
>sp|Q31C72|UCRI_PROM9 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9312) GN=petC PE=3 SV=1
Length = 178
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 49/83 (59%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
+ WL TH GDR+L +GLK
Sbjct: 62 PVTKTGWLATHQAGDRSLVQGLK 84
>sp|A9BE84|UCRI_PROM4 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9211) GN=petC PE=3 SV=1
Length = 178
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDII 115
P+D VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN I
Sbjct: 6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPIT 64
Query: 116 AADWLNTHGPGDRTLTEGLK 135
A+ WL+ H GDR+L +GLK
Sbjct: 65 ASGWLSNHPAGDRSLVQGLK 84
>sp|A8G3H7|UCRI_PROM2 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9215) GN=petC PE=3 SV=1
Length = 178
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 48/83 (57%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + + VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSKDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
I WL TH GDR+L +GLK
Sbjct: 62 PITKTGWLATHQAGDRSLVQGLK 84
>sp|Q7V2L4|UCRI_PROMP Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC
PE=3 SV=1
Length = 178
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
+ WL +H GDR+L +GLK
Sbjct: 62 PVTKTGWLASHQAGDRSLVQGLK 84
>sp|P83794|UCRI_MASLA Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus
laminosus GN=petC PE=1 SV=2
Length = 179
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G+ GGGTTAKD +GN++ + +
Sbjct: 10 VPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKF 69
Query: 120 LNTHGPGDRTLTEGLK 135
L +H GDR L +GLK
Sbjct: 70 LESHNAGDRVLVQGLK 85
>sp|A2BVC4|UCRI_PROM5 Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain MIT 9515) GN=petC PE=3 SV=1
Length = 178
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 48/83 (57%)
Query: 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGN 112
T + ++ VP MG+RQ MNLL G + L P A +F P G GGGT+AKD +GN
Sbjct: 2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGN 61
Query: 113 DIIAADWLNTHGPGDRTLTEGLK 135
+ WL H GDR+L +GLK
Sbjct: 62 PVTKTGWLANHQAGDRSLVQGLK 84
>sp|B2J3K2|UCRI_NOSP7 Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=petC PE=3 SV=1
Length = 179
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 46/76 (60%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G AGGGTTAKD +GND+ +
Sbjct: 10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVTKF 69
Query: 120 LNTHGPGDRTLTEGLK 135
L GDR L +GLK
Sbjct: 70 LENRNAGDRNLVQGLK 85
>sp|Q7VDC0|UCRI_PROMA Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=petC PE=3
SV=1
Length = 178
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDII 115
P+D VP MG+RQ MNLL G + L P A FF P G GGTTAKD +GN +
Sbjct: 6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANFFMPLRAGGGTGGTTAKDELGNAVT 64
Query: 116 AADWLNTHGPGDRTLTEGLK 135
A WL+ H GDR+L +GLK
Sbjct: 65 ATGWLSNHPAGDRSLVQGLK 84
>sp|P14698|UCRI_NOSSP Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain
PCC 7906) GN=petC PE=3 SV=1
Length = 179
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 47/76 (61%)
Query: 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADW 119
VPDMG+RQ MNLL G V+ L P +F PP G AGGGTTAKD +GND+ + +
Sbjct: 10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPASGGAGGGTTAKDELGNDVSLSKF 69
Query: 120 LNTHGPGDRTLTEGLK 135
L GDR L +GLK
Sbjct: 70 LENRNAGDRALVQGLK 85
>sp|Q2JUP1|UCRI_SYNJA Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain JA-3-3Ab) GN=petC PE=3 SV=1
Length = 172
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 59 RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAAD 118
P M +R +N LL +V + L P +F PP G AG G A+DA+G I ++
Sbjct: 9 EAPPMSRRVFLNALLSSSVGVVVVGTLYPVVKYFIPPSSGGAGEGVIAQDALGKPISVSE 68
Query: 119 WLNTHGPGDRTLTEGLK 135
L TH DR L +GLK
Sbjct: 69 LLATHAATDRVLAQGLK 85
>sp|Q2JL39|UCRI_SYNJB Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=petC PE=3 SV=1
Length = 172
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 59 RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAAD 118
P M +R L+N LL G+V + L P +F PP G G G A+DA+G I ++
Sbjct: 9 EAPPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSE 68
Query: 119 WLNTHGPGDRTLTEGLK 135
L TH DR L +GLK
Sbjct: 69 LLATHAATDRVLAQGLK 85
>sp|Q7XYM4|UCRIA_BIGNA Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
OS=Bigelowiella natans GN=petC PE=2 SV=1
Length = 252
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 14 QLCSSKGGMFCPSRAFLVKPARTQMVTKNPM---GMKIKCQATSIPADRVPDMGKRQLMN 70
QL + +G + P +F +R V++N + K QA D VPDMGKR+LMN
Sbjct: 36 QLSAVRGKIAAPRTSFQNAVSR---VSRNQLPSSSRKAVAQAFLSNPDMVPDMGKRKLMN 92
Query: 71 LLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTL 130
L+L AV+ Y +F PP G GG A DA+GN + A W +H R L
Sbjct: 93 NLVLAAVAPVVASAGGCYLYYFYPPQTGGGGGAVGALDALGNPVSAESWFKSHKKNARDL 152
Query: 131 TEGLK 135
+G+K
Sbjct: 153 VQGIK 157
>sp|Q7NCE1|UCRI_GLOVI Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter
violaceus (strain PCC 7421) GN=petC PE=3 SV=1
Length = 186
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 57 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIA 116
A +P M +RQL++ + GA++ T L P +F PP G G AKD G DI
Sbjct: 6 AQEIP-MSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISV 64
Query: 117 ADWLNTHGPGDRTLTEGL 134
+ L PG+ LT GL
Sbjct: 65 SKLLAAATPGEPVLTLGL 82
>sp|Q93SW8|UCRIB_NOSS1 Cytochrome b6-f complex iron-sulfur subunit 2 OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=petC2 PE=3 SV=1
Length = 178
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 61 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADW 119
P M +RQL+N V+ + P FF PP + A GG A+D IG+ I A+
Sbjct: 10 PSMSRRQLLNFFTGAIVATTASAAIYPATKFFMPPAESTDAEGGILAQDKIGHPIPASQI 69
Query: 120 LNTHGPGDRTLTEGL 134
L G R L GL
Sbjct: 70 L-AQASGTRALIAGL 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,021,014
Number of Sequences: 539616
Number of extensions: 2211006
Number of successful extensions: 4990
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4920
Number of HSP's gapped (non-prelim): 61
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)