BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032243
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 209 bits (532), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 97/127 (76%), Positives = 106/127 (83%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM +
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 189
Query: 123 ARPPTVQ 129
A V+
Sbjct: 190 AEKSNVK 196
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 207 bits (528), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/112 (84%), Positives = 102/112 (91%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 53 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 112
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 113 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/112 (84%), Positives = 102/112 (91%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 60 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/112 (84%), Positives = 102/112 (91%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 60 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/113 (84%), Positives = 102/113 (90%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 79 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 138
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 206 bits (525), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 95/112 (84%), Positives = 102/112 (91%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 203 bits (517), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/113 (83%), Positives = 101/113 (89%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 199 bits (505), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 99/113 (87%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+F AA IK R
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKRXG 199
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 197 bits (500), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 99/113 (87%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
K DLT KVV TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 196 bits (499), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 99/113 (87%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
K DLT KVV TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 190 bits (483), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/145 (64%), Positives = 105/145 (72%), Gaps = 6/145 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+ V KLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDL +VV Y+ AK FAD +PF+ETSA DSTNVE AF+ MA IK+ M SQ ++N
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM-SQQNLNE 180
Query: 123 ARPP-----TVQIKGQPVAQKSGCC 142
V +KGQ + GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGCC 205
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 186 bits (472), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/145 (63%), Positives = 104/145 (71%), Gaps = 6/145 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+ V KLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDL +VV Y+ AK FAD +PF+ETSA DSTNVE AF+ MA IK+ M SQ ++N
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM-SQQNLNE 180
Query: 123 ARPP-----TVQIKGQPVAQKSGCC 142
V +KGQ + G C
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGGC 205
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 175 bits (443), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 90/110 (81%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+ V KLLVGN
Sbjct: 75 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 134
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112
KCDL +VV Y+ AK FAD +PF+ETSA DSTNVE AF+ MA IK+
Sbjct: 135 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 94/112 (83%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGIIIVYDVTD++SF+NVKQW+ EIDRYA +NVNKLLVGN
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
KCDL + +VV+ + + AD GI F+ETSAK++ NVEQAF MA IK R+
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 138 bits (348), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 62/66 (93%), Positives = 64/66 (96%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 52 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 111
Query: 63 KCDLTA 68
KCDLT
Sbjct: 112 KCDLTT 117
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 85/112 (75%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+ I+ +AS +V K+++GN
Sbjct: 60 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
KCD+ + VS E + A + GI FMETSAK + NVE AF +A IK +M
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 135 bits (340), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 85/112 (75%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+ I+ +AS +V K+++GN
Sbjct: 62 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
KCD+ + VS E + A + GI FMETSAK + NVE AF +A IK +M
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW ++ +A+D LLVGN
Sbjct: 74 WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
K D+ +VV+ + +A A E+GIPF+E+SAK+ NV + F +A I++++ S
Sbjct: 134 KSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 186
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW ++ +A+D LLVGN
Sbjct: 61 WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 120
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
K D+ +VV+ + +A A E+GIPF+E+SAK+ NV + F +A I++++ S
Sbjct: 121 KSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 173
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW ++ +A+D LLVGN
Sbjct: 57 WDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
K D+ +VV+ + +A A E+GIPF+E+SAK+ NV + F +A I++++ S
Sbjct: 117 KSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW ++ +A+D LLVGN
Sbjct: 57 WDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
K D +VV+ + +A A E+GIPF+E+SAK+ NV + F +A I++++ S
Sbjct: 117 KSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW ++ +A+D LLVGN
Sbjct: 57 WDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
K D +VV+ + +A A E+GIPF+E+SAK+ NV + F +A I++++ S
Sbjct: 117 KSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 79/116 (68%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI YA +V +L+GN
Sbjct: 65 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
K D +VV E + A E G+PFMETSAK NV+ AF A+A +K R P
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 129 bits (323), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 84/119 (70%), Gaps = 5/119 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITS+YYRG HG+I+VYDVT ESF NVK+WL+EI++ D+V ++LVGN
Sbjct: 63 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI----KDRMASQ 117
K D KVV E A FA ++GI ETSAK++ NVE+ F + + KD +A Q
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 76/108 (70%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W +I Y+ DN LLVGN
Sbjct: 59 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 118
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
KCD+ +VVS E + AD +G F E SAKD+ NV+Q F + I
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ER+RTIT++YYRGA G I+ YD+T++ESFN V+ W +I Y+ DN LLVGN
Sbjct: 62 WDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCD +VVS E + AD +G F E SAKD+ NV+Q F + I ++ + S++
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE--SLDT 179
Query: 123 ARPPTVQIKGQP 134
A P K P
Sbjct: 180 ADPAVTGAKQGP 191
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 81/113 (71%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W +I Y+ DN +LVGN
Sbjct: 77 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
KCD+ +VV E + A+++G F E SAK++ +V QAF + +I D+M+
Sbjct: 137 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+RTIT++YYRGA G +++YD+ +QESF V+ W +I Y+ DN +LVGN
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
KCDL +VV E + AD++G F E SAK++ NV+Q F + I ++M
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 78/108 (72%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL + +++S N+ +L+GN
Sbjct: 75 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + + V E +AFA E G+ FMETSAK + NVE+AF+ A I
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 76/108 (70%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGN
Sbjct: 83 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V + A+AFA++ G+ F+ETSA DSTNVE AF + I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 76/108 (70%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGN
Sbjct: 74 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 133
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V + A+AFA++ G+ F+ETSA DSTNVE AF + I
Sbjct: 134 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 81/111 (72%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++ WL + ++++ N+ +L+GN
Sbjct: 64 WDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGN 123
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
K DL + + V E +AFA E G+ FMETSAK ++NVE+AF+ A I ++
Sbjct: 124 KSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 119 bits (297), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 82/121 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF + +WL EI++YAS+ V +LVGN
Sbjct: 80 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGN 139
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DL + VS + A+ F++ + ++ETSAK+S NVE+ F+ +A + +NN
Sbjct: 140 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNN 199
Query: 123 A 123
Sbjct: 200 V 200
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+ ID+YAS++ LLVGN
Sbjct: 80 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139
Query: 63 KCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
K D ++ ++ + + FA +I G+ F E SAKD+ NV++ F+ + I +M
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGN
Sbjct: 59 WDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 118
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 120
K DL + V + A+AFA++ + F+ETSA DSTNVE+AF + I R+ SQ +
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY-RIVSQKQI 175
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR +T SYYRGA G ++VYD+T + ++N++ WL + + N +L+GN
Sbjct: 69 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL A + V+YE AK FA+E G+ F+E SAK NVE AF+ A I
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 75/108 (69%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGN
Sbjct: 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V + A+AFA++ G+ F+ETSA DSTNVE AF + I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 83/124 (66%), Gaps = 9/124 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V W+ ++ +YA N+ +LL+GN
Sbjct: 83 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142
Query: 63 KCDLTANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
K DL+ + VS A++ A+ I +ETSAKDS+NVE+AF+ R+A++ M
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL--------RVATELIMR 194
Query: 122 NARP 125
+ P
Sbjct: 195 HGGP 198
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 75/108 (69%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGN
Sbjct: 62 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V + A+AFA++ G+ F+ETSA DSTNVE AF + I
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 115 bits (289), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T+QE+F K W+ E+ R AS ++ L GN
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL ++V YE A+A+AD+ + FMETSAK + NV F+A+A +
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 115 bits (288), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 74/108 (68%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ LVGN
Sbjct: 59 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 118
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V + A+AFA++ G+ F+ETSA DSTNVE AF + I
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 74/108 (68%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ LVGN
Sbjct: 65 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V + A+AFA++ G+ F+ETSA DSTNVE AF + I
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GN
Sbjct: 61 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 120
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V ++ A+++AD+ + FMETSAK S NV + FMA+A +
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GN
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V ++ A+++AD+ + FMETSAK S NV + FMA+A +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GN
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V ++ A+++AD+ + FMETSAK S NV + FMA+A +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GN
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V ++ A+++AD+ + FMETSAK S NV + FMA+A +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GN
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V ++ A+++AD+ + FMETSAK S NV + FMA+A +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GN
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V ++ A+++AD+ + FMETSAK S NV + FMA+A +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GN
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V ++ A+++AD+ + FMETSAK S NV + FMA+A +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 72/108 (66%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQ RFR +T SYYRGA G ++VYD+T + ++N++ WL + + N +L+GN
Sbjct: 84 WDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 143
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL A + V+YE AK FA+E G+ F+E SAK NVE AF+ A I
Sbjct: 144 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T+ ++F K W+ E+ R AS N+ L GN
Sbjct: 59 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGN 118
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + + V ++ A+A+AD+ + FMETSAK + NV + FMA+A +
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T+ ++F K W+ E+ R AS N+ L GN
Sbjct: 57 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGN 116
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + + V ++ A+A+AD+ + FMETSAK + NV + FMA+A +
Sbjct: 117 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 112 bits (280), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 77/114 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR++T SYYRGA G ++VYD+T +E++N + WL + AS N+ +L GN
Sbjct: 64 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
K DL A++ V++ A FA E + F+ETSA NVE+AF+ A I +++ S
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 112 bits (280), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 72/108 (66%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ER+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GN
Sbjct: 59 WDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 118
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V ++ A+++AD+ + FMETSAK S NV + FMA+A +
Sbjct: 119 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 112 bits (279), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+R ITS+YYRGA G ++VYD+T + SF N+++WL E+ A N+ LLVGN
Sbjct: 62 WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD-RMASQPSMN 121
K DL +V++ A +A + + F+ETSA ++TNVE AF + I + R Q + N
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 77/114 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR++T SYYRGA G ++VYD+T +E++N++ WL + AS N+ +L GN
Sbjct: 79 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGN 138
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
K DL + V++ A FA E + F+ETSA NVE+AF+ A +I +++ S
Sbjct: 139 KKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 78/115 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ER+R ITS+YYRGA G ++V+D+T +++ V++WL E+ +A + +LVGN
Sbjct: 79 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
K DL+ + V E A+ FA+ G+ F+ETSA DSTNVE AF + I +++ Q
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 78/115 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ER+R ITS+YYRGA G ++V+D+T +++ V++WL E+ +A + +LVGN
Sbjct: 64 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 123
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
K DL+ + V E A+ FA+ G+ F+ETSA DSTNVE AF + I +++ Q
Sbjct: 124 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 74/115 (64%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+R ITS+YYRGA G +IVYD++ S+ N WL+E+ A DNV L+GN
Sbjct: 67 WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
K DL + V E +K FA E + F ETSA +S NV++AF + +I +++
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH 181
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 72/108 (66%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ER+ ++ YYRGA I+VYD+T+ ++F K W+ E+ R AS N+ L GN
Sbjct: 59 WDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGN 118
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + + V ++ A+A+AD+ + FMETSAK + NV + FMA+A +
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 71/108 (65%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GN
Sbjct: 61 WDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 120
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V ++ A+++AD+ + F ETSAK S NV + F A+A +
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 108 bits (271), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR++T SYYRGA G ++VYD+T +E++N + WL + AS N+ +L GN
Sbjct: 65 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
K DL A++ V++ A FA E + F+ETSA +VE+AF+ A I ++
Sbjct: 125 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 73/110 (66%)
Query: 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
+ WDTAGQERF ++ YYRG+ +IVYD+T Q+SF +K+W+ E+ + +N+ +
Sbjct: 75 LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134
Query: 61 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
GNKCDL+ + V + AK +A+ IG +ETSAK++ N+E+ F ++ I
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ERFR++T SYYRGA G ++VYD+T +E++N + WL + AS N+ +L GN
Sbjct: 62 WDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
K DL A++ V++ A FA E + F+ETSA +VE+AF+ A I ++
Sbjct: 122 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 69/108 (63%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ER+R ITS+YYRGA G +IVYD++ S+ N WL E+ A DNV L+GN
Sbjct: 64 WDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGN 123
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V + AK FA E + F ETSA +S NV++AF + +I
Sbjct: 124 KSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAI 171
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 69/105 (65%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ ++ YYRGA IIV+DVT+Q SF K+W+ E+ + N+ L GN
Sbjct: 66 WDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGN 125
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
K DL + V+ E A+ +A E G+ FMETSAK +TNV++ F +A
Sbjct: 126 KSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 72/110 (65%)
Query: 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
+ WDTAGQERFR + YYRG+ IIVYD+T +E+F+ +K W+ E+ ++ ++ +
Sbjct: 57 LIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 116
Query: 61 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
GNKCDLT + V AK +AD I F+ETSAK++ N+ + F+ ++ I
Sbjct: 117 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++ A +N + +L+G
Sbjct: 89 WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 148
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
NK DL + V+ A+ AD+ GIP+ ETSA NVE+A + I RM
Sbjct: 149 NKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
WDTAG ERFR++T++++R A G ++++D+T+++SF NV+ W++++ +A S+N + +L G
Sbjct: 75 WDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCG 134
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
NK DL + V E A+ A++ GIP+ ETSA + TN+ A + I RM
Sbjct: 135 NKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 71/110 (64%)
Query: 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
+ WDTAG ERFR + YYRG+ IIVYD+T +E+F+ +K W+ E+ ++ ++ +
Sbjct: 58 LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 117
Query: 61 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
GNKCDLT + V AK +AD I F+ETSAK++ N+ + F+ ++ I
Sbjct: 118 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR+I SY+R A G++++YDVT ++SF N+++W++ I+ A + V +LVGN
Sbjct: 82 WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141
Query: 63 KCDL------TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
K D+ K V + A G F ETSAKD +N+ +A + +A +K R
Sbjct: 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 5/114 (4%)
Query: 3 WDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLV 60
WDTAGQERFR ++ YYR H ++ VYD+T+ SF+++ W+ E ++ ++++ ++LV
Sbjct: 74 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133
Query: 61 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAK---DSTNVEQAFMAMAASIK 111
GNKCDL + V + A+ FAD +P ETSAK D+ +VE FM +A +K
Sbjct: 134 GNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 67/105 (63%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERF + YYR ++G I+VYD+TD++SF VK W+ E+ + + + +VGN
Sbjct: 74 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 133
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
K DL + VS + A+++A+ +G TSAK + +E+ F+ +
Sbjct: 134 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 178
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++ A +N + +L+G
Sbjct: 75 WDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 134
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
NK DL + V+ A+ A++ GIP+ ETSA NVE++ + I RM
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKT 194
Query: 122 NARPPTV------QIKGQPVAQKSGCC 142
P TV ++ G+ A+K C
Sbjct: 195 QV-PDTVNGGNSGKLDGEKPAEKKCAC 220
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 67/105 (63%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERF + YYR ++G I+VYD+TD++SF VK W+ E+ + + + +VGN
Sbjct: 60 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
K DL + VS + A+++A+ +G TSAK + +E+ F+ +
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 67/105 (63%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERF + YYR ++G I+VYD+TD++SF VK W+ E+ + + + +VGN
Sbjct: 60 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
K DL + VS + A+++A+ +G TSAK + +E+ F+ +
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++ A +N + +L+G
Sbjct: 75 WDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 134
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
NK DL + V+ A+ A++ GIP+ ETSA NVE++ + I RM
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN-VNKLLVG 61
WDTAGQERFRT+T SYYRGA G+I+VYDVT +++F + WLNE++ Y + N + LVG
Sbjct: 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
NK D N+ V FA + F+E SAK V+ AF + I
Sbjct: 129 NKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 95.9 bits (237), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 84/146 (57%), Gaps = 10/146 (6%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ERFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGN
Sbjct: 67 WDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 126
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DL + VS E + A E+ + F+ETSAK NV+Q F +AA++ ++Q +
Sbjct: 127 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DR 183
Query: 123 ARPPTVQIK-----GQPVAQKSGCCS 143
+R + IK QPV++ G CS
Sbjct: 184 SREDMIDIKLEKPQEQPVSE--GGCS 207
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 71/114 (62%), Gaps = 5/114 (4%)
Query: 3 WDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLV 60
WDTAGQERFR ++ YYR H ++ VYD T+ SF+++ W+ E ++ ++++ ++LV
Sbjct: 83 WDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILV 142
Query: 61 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAK---DSTNVEQAFMAMAASIK 111
GNKCDL + V + A+ FAD P ETSAK D+ +VE F +A +K
Sbjct: 143 GNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLK 196
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ERFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGN
Sbjct: 70 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 129
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DL + VS E + A E+ + F+ETSAK NV+Q F +AA++ ++Q +
Sbjct: 130 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DR 186
Query: 123 ARPPTVQIK-----GQPVAQKSGCC 142
+R + IK QPV++ GC
Sbjct: 187 SREDMIDIKLEKPQEQPVSE-GGCL 210
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR++ SY R + ++VYD+T+ SF+ +W++++ +V +LVGN
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGN 127
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL+ + VS E + A E+ + F+ETSAK NV+Q F +AA++
Sbjct: 128 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 68/108 (62%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGN
Sbjct: 60 WDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + VS E + A E+ + F+ETSAK NV+Q F +AA++
Sbjct: 120 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++ A +N + +L+G
Sbjct: 75 WDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIG 134
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
NK DL + V+ A+ A++ GIP+ ETSA NVE++ + I R
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++ A +N + +L+G
Sbjct: 75 WDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIG 134
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
NK DL + V+ A+ A++ GIP+ ETSA NVE++ + I R
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 68/108 (62%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGN
Sbjct: 55 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 114
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + VS E + A E+ + F+ETSAK NV+Q F +AA++
Sbjct: 115 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERF ++ YYR A ++VYDVT +SF + W+ E+ AS ++ LVGN
Sbjct: 57 WDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGN 116
Query: 63 KCDLT---ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K D + V+ E + A+E G+ F ETSAK NV F+ + I
Sbjct: 117 KIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG ERFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGN
Sbjct: 60 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DL + VS E + A E+ + F+ETSAK NV+Q F +AA++ ++Q +
Sbjct: 120 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DR 176
Query: 123 ARPPTVQIK 131
+R + IK
Sbjct: 177 SREDMIDIK 185
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 68/108 (62%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGN
Sbjct: 56 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGN 115
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + ++ E + A E+ + F+ETSAK NV+Q F +A+++
Sbjct: 116 KTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 10/115 (8%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK----- 57
WDTAGQERF+++ ++YRGA ++VYDVT+ SF N+K W +E +A NVN
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFP 120
Query: 58 -LLVGNKCDL-TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAAS 109
+++GNK D + K+VS ++A+ A +G IP TSAK++ NV+ AF +A S
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR++ SY R + I+VYD+T+++SF N +W+ +I +V LVGN
Sbjct: 55 WDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGN 114
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL + V+YE A E F ETSAK N++ F A+ +
Sbjct: 115 KTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+ Q +
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-----QHKLR 169
Query: 122 NARPP 126
PP
Sbjct: 170 KLNPP 174
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
WDTAGQERF+++ ++YRGA ++V+DVT +F + W +E AS +N +
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 59 LVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 107
++GNK DL N+ V+ + A+A+ + IP+ ETSAK++ NVEQAF +A
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
WDTAGQERFR++ + +YRG+ ++ + V D +SF N+ W E YA ++ +
Sbjct: 65 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 124
Query: 59 LVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
++GNK D+ + VS E A+A+ + G P+ ETSAKDSTNV AF
Sbjct: 125 ILGNKTDIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
WDTAGQERF+++ ++YRGA ++V+DVT +F + W +E AS +N +
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 59 LVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 107
++GNK DL N+ V+ + A+A+ + IP+ ETSAK++ NVEQAF +A
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
M WDTAGQE F IT +YYRGA ++V+ TD+ESF + W ++ D + LV
Sbjct: 57 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALV 115
Query: 61 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
NK DL + + E A+ A + + F TS K+ NV + F +A
Sbjct: 116 QNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 62 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 121
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 122 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 170
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 61 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 121 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 61 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 121 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
WDTAGQERFR++ + +YRG+ ++ + V D +SF N+ W E YA ++ +
Sbjct: 63 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 122
Query: 59 LVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
++GNK D++ + VS E A+A+ + G P+ ETSAKD+TNV AF
Sbjct: 123 ILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
WDTAGQERFR++ + +YRG+ ++ + V D +SF N+ W E YA ++ +
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120
Query: 59 LVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
++GNK D++ + VS E A+A+ + G P+ ETSAKD+TNV AF
Sbjct: 121 ILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 63 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 122
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 123 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 171
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 6/110 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
WDTAGQERF+++ ++YRGA ++V+DVT +F + W +E AS +N +
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 59 LVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 107
++GNK D N+ V+ + A+A+ + IP+ ETSAK++ NVEQAF +A
Sbjct: 122 VLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A + V A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDL-AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
N+CDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NRCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DT GQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 6/110 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
WDTAG ERF+++ ++YRGA ++V+DVT +F + W +E AS +N +
Sbjct: 62 WDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 59 LVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 107
++GNK DL N+ V+ + A+A+ + IP+ ETSAK++ NVEQAF +A
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAG+E + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAG E + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DT GQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + +
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFR 164
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAG E + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 61 LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 121 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAG E + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAG E + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGN 62
DTAGQE + I +Y+R G + V+ +T+ ESF + +I R D NV LLVGN
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
K DL + VS E AK AD+ + ++ETSAK NV++ F + I+ R
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAG E + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAG E + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
WDTAGQERF+++ + +YRGA ++ + V D++SF N+ W E YA ++ +
Sbjct: 61 WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120
Query: 59 LVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
++GNK D ++ V+ E A+ + E G P++ETSAKD TNV AF
Sbjct: 121 VLGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAG E + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVG 61
DTAG E + I +Y+R G ++V+ +T+ ESF ++ +I R + D + L+VG
Sbjct: 61 DTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVG 120
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
NK DL + V E A++ A+E G+ ++ETSAK NV++ F + I+ + S+
Sbjct: 121 NKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 176
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVG 61
DTAG E + I +Y+R G ++V+ +T+ ESF ++ +I R + D + L+VG
Sbjct: 57 DTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVG 116
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
NK DL + V E A++ A+E G+ ++ETSAK NV++ F + I+ + S+
Sbjct: 117 NKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 172
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVG 61
DTAGQE F + Y R HG ++V+ + D++SFN V + +I R D+ +LVG
Sbjct: 62 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NK DL + + V A AF + + E SAK NV++AF + +++
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NK DL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKSDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGN 62
DTAGQE + I +Y+R G + V+ +T+ ESF + +I R D NV LLVGN
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 127
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
K DL + VS E AK A++ + ++ETSAK NV++ F + I+ R
Sbjct: 128 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ + +I R SD+V +LVG
Sbjct: 74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL + V + A A GIPF+ETSAK VE AF + I+
Sbjct: 134 NKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NK DL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKSDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGN 62
DTAGQE + I +Y+R G + V+ +T+ ESF + +I R D NV LLVGN
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 131
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
K DL + VS E AK A++ + ++ETSAK NV++ F + I+ R
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGN 62
DTAGQE + I +Y+R G + V+ +T+ ESF + +I R D NV LLVGN
Sbjct: 60 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
K DL + VS E AK A++ + ++ETSAK NV++ F + I+ R
Sbjct: 120 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGN 62
DTAG E+F ++ Y + G I+VY + +Q+SF ++K ++I R + V +LVGN
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
K DL + + VS +A A+E G PFMETSAK T V++ F
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVG 61
DTAGQE F + Y R G ++V+ VTD+ SF + ++ +I R D +L+G
Sbjct: 58 LDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIG 117
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NK DL + V+ E + A ++ + +ME SAK NV+QAF + I+
Sbjct: 118 NKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ + +I R S++V +LVG
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL ++ V + A+ A GIPF+ETSAK V+ AF + I+
Sbjct: 117 NKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER+ +I YYRGA I+V+D+++ + + K W+N++ S N +LV N
Sbjct: 98 WDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVAN 155
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K D +V E K +A + + F++TSAK TN++ F +A I
Sbjct: 156 KIDKNKFQVDILEVQK-YAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTA QE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NK DL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKXDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTA QE + + Y R G + V+ + + +SF ++ Q+ +I R SD+V +LVG
Sbjct: 56 LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NK DL A V S + A+ A GIP++ETSAK VE AF + I+
Sbjct: 116 NKXDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAG E + + Y R G + V+ + + +SF ++ + +I R S++V +LVG
Sbjct: 74 LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 133
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NKCDL ++ V + A+ A GIPF+ETSAK V+ AF + I+
Sbjct: 134 NKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 182
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGN 62
DTAG E + I +Y+R G + V+ +T+ ESF + +I R D NV LLVGN
Sbjct: 60 DTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
K DL + VS E AK A++ + ++ETSAK NV++ F + I+ R
Sbjct: 120 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 2 QW------DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DN 54
QW DTAGQE F + Y R G +IVY VTD+ SF +V ++ I R ++
Sbjct: 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123
Query: 55 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIK 111
+LV NK DL + V+ + K A + IP++ETSAKD NV++ F + I+
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 2 QW------DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DN 54
QW DTAGQE F + Y R G +IVY VTD+ SF +V ++ I R ++
Sbjct: 59 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 118
Query: 55 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIK 111
+LV NK DL + V+ + K A + IP++ETSAKD NV++ F + I+
Sbjct: 119 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 176
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 2 QW------DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DN 54
QW DTAGQE F + Y R G +IVY VTD+ SF +V ++ I R ++
Sbjct: 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123
Query: 55 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIK 111
+LV NK DL + V+ + K A + IP++ETSAKD NV++ F + I+
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 2 QW------DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DN 54
QW DTAGQE F + Y R G +IVY VTD+ SF +V ++ I R ++
Sbjct: 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123
Query: 55 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIK 111
+LV NK DL + V+ + K A + IP++ETSAKD NV++ F + I+
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ + +I R S++V +LVG
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NK DL ++ V + A+ A GIPF+ETSAK V+ AF + I+
Sbjct: 117 NKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ + +I R S++V +LVG
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NK DL ++ V + A+ A GIPF+ETSAK V+ AF + I+
Sbjct: 117 NKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
DTAGQE + + Y R G + V+ + + +SF ++ + +I R S++V +LVG
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
NK DL ++ V + A+ A GIPF+ETSAK V+ AF + I+
Sbjct: 117 NKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
DTAG E+F + Y + G +VY +T Q +FN+++ +I R +D+V +LVGN
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 116
Query: 63 KCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASI 110
KCDL +VV E + A + F+E+SAK NV + F + I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
DTAG E+F + Y + G +VY +T Q +FN+++ +I R +D+V +LVGN
Sbjct: 59 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 118
Query: 63 KCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASI 110
KCDL +VV E + A + F+E+SAK NV + F + I
Sbjct: 119 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
DTAG E+F + Y + G +VY +T Q +FN+++ +I R +++V +LVGN
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
Query: 63 KCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 110
KCDL +VV E + A + F+E+SAK NV + F + I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
DTAG E+F + Y + G +VY +T Q +FN+++ +I R +++V +LVGN
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
Query: 63 KCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 110
KCDL +VV E + A + F+E+SAK NV + F + I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 57 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 115
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
K D+ KV + + F + + + + SAK + N E+ F+ +A I D +M
Sbjct: 116 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 173
Query: 122 NARPPTV 128
PP V
Sbjct: 174 ALAPPEV 180
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
K D+ KV + + F + + + + SAK + N E+ F+ +A I D +M
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTV 128
PP V
Sbjct: 181 ALAPPEV 187
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
K D+ KV + + F + + + + SAK + N E+ F+ +A I D +M
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTV 128
PP V
Sbjct: 181 ALAPPEV 187
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 64 WDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
K D+ KV + + F + + + + SAK + N E+ F+ +A I D +M
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTV 128
PP V
Sbjct: 181 ALAPPEV 187
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 69 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 127
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
K D+ KV + + F + + + + SAK + N E+ F+ +A I D +M
Sbjct: 128 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 185
Query: 122 NARPPTV 128
PP V
Sbjct: 186 ALAPPEV 192
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
K D+ KV + + F + + + + SAK + N E+ F+ +A I D +M
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTV 128
PP V
Sbjct: 181 CLAPPEV 187
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 69 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 127
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
K D+ KV + + F + + + + SAK + N E+ F+ +A I D +M
Sbjct: 128 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 185
Query: 122 NARPPTV 128
PP V
Sbjct: 186 ALAPPEV 192
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG E+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 66 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K D+ KV + F + + + + SAK + N E+ F+ +A ++A P +
Sbjct: 125 KVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQLEF 178
Query: 123 A-----RPPTVQIKGQ 133
PP VQ+ Q
Sbjct: 179 VASPALAPPEVQVDEQ 194
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K D+ KV + + F + + + + SAK + N E+ F+ +A +
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K D+ KV + + F + + + + SAK + N E+ F+ +A +
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE++ + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 64 WDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
K D+ KV + + F + + + + SAK + N E+ F+ +A I D +M
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTV 128
PP V
Sbjct: 181 ALAPPEV 187
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+F + YY A II +DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K D+ KV + + F + + + + SAK + N E+ F+ +A +
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG E+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 64 WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
K D+ KV + + F + + + + SAK + N E+ F+ +A I D +M
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTVQIKGQPVAQ 137
PP V + AQ
Sbjct: 181 ALAPPEVVMDPALAAQ 196
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG E+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 59 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGN 117
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 120
K D+ KV + F + + + + SAK + N E+ F+ +A ++A P +
Sbjct: 118 KVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQL 169
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG E+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 58 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGN 116
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 120
K D+ KV + F + + + + SAK + N E+ F+ +A ++A P +
Sbjct: 117 KVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQL 168
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG E+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 66 WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K D+ KV + + F + + + + SAK + N E+ F+ +A +
Sbjct: 125 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAG E+F + YY A II++DVT + ++ NV W ++ R +N+ +L GN
Sbjct: 60 WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 118
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K D+ KV + + F + + + + SAK + N E+ F+ +A +
Sbjct: 119 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 4 DTAGQERFRTI-TSSYYRGAHGIIIVYDVTDQESFNNV---KQWLNEIDRYASDNVNKLL 59
DTAGQE TI + R G ++VYD+TD+ SF V K L+EI + NV +L
Sbjct: 82 DTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLIL 137
Query: 60 VGNKCDLTANKVVSYETAKAFADEIGIPFMETSA-KDSTNVEQAFMAMAASIKDRMASQ 117
VGNK DL ++ VS E + A E+ F E SA N+ + F + ++ R Q
Sbjct: 138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
DTAGQ+ + +Y +G I+VY VT +SF +K ++ D + +LVGN
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
K DL +V+SYE KA A+ F+E+SAK++ F
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
DTAGQ+ + + S+ G HG ++VY VT SF ++ ++ + + V +LVGN
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
K DL+ + V K A+ G FME+SA+++ + F + I
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
DTAGQ+ + +Y +G I+VY VT +SF +K ++ D + +LVGN
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
K DL +V+SYE KA A+ F+E+SAK++ F
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
DTAGQ+ + +Y +G I+VY VT +SF +K ++ D + +LVGN
Sbjct: 58 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 117
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
K DL +V+SYE KA A+ F+E+SAK++ F
Sbjct: 118 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
DTAGQ+ + +Y +G I+VY VT +SF +K ++ D + +LVGN
Sbjct: 55 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 114
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
K DL +V+SYE KA A+ F+E+SAK++ F
Sbjct: 115 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
WD GQ + Y GA G+++VYD+T+ +SF N++ W + + + ++ + L
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120
Query: 60 VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
VGNK DL + + E F E G SAK +V F +AA I
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG
Sbjct: 62 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVG 120
Query: 62 NKCDLTANK--------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K V++ + +IG ++E S+K NV+ F
Sbjct: 121 TKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVG 61
DT G +F + H I+VY +T ++S +K +I D ++ +LVG
Sbjct: 57 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
NKCD + ++ V A+A A FMETSAK + NV++ F + K R S
Sbjct: 117 NKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQE+ + YY GA G I+ +DVT + + N+ +W+ E + ++ N
Sbjct: 66 WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
K D+ + +S + + E SAK + N F+ +A R
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG
Sbjct: 61 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVG 119
Query: 62 NKCDLTANK----------VVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASI 110
K DL +K ++ + IG P ++E S+K NV+ F A
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI--- 176
Query: 111 KDRMASQP 118
R+ QP
Sbjct: 177 --RVVLQP 182
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG
Sbjct: 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVG 117
Query: 62 NKCDLTANK----------VVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMA 105
K DL +K ++ + IG P ++E S+K NV+ F A
Sbjct: 118 TKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA 172
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + YRGA ++ + + + S+ N+ K+WL E+ YA + +LVG
Sbjct: 59 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAP-GIPIVLVG 117
Query: 62 NKCDLTANK--------VVSYETAKA--FADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K S TA+ IG + ++E S+K NV+ F
Sbjct: 118 TKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQ+ + + +Y A +++ +DVT SF+N+ +W E++ + V ++VG
Sbjct: 87 WDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVG 145
Query: 62 NKCDLTANKV------------VSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMA 107
K DL +K V+Y + A +G + ++E SA+ NV F A
Sbjct: 146 CKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY--ASDNVNKLLVG 61
DT G +F + H I+V+ VT ++S + I + + +++ +LVG
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 106
NKCD T +V + E A+A A E FMETSAK + NV++ F +
Sbjct: 122 NKCDETQREVDTRE-AQAVAQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 58 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 108 ASIKDRMASQPS 119
A+++ R + S
Sbjct: 177 AALQARRGKKKS 188
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 60 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 118
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 108 ASIKDRMASQPS 119
A+++ R + S
Sbjct: 179 AALQARRGKKKS 190
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 58 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 108 ASIKDRMASQPS 119
A+++ R + S
Sbjct: 177 AALQARRGKKKS 188
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 58 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 108 ASIKDRMASQPS 119
A+++ R + S
Sbjct: 177 AALQARRGKKKS 188
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 61 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 119
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
Query: 108 ASIKDRMASQPS 119
A+++ R + S
Sbjct: 180 AALQARRGKKKS 191
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 60 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 118
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 108 ASIKDRMASQPS 119
A+++ R + S
Sbjct: 179 AALQARRGKKKS 190
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 26 IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
+IVY VTD+ SF + ++ R +D+V +LVGNK DL ++ VS + +A A
Sbjct: 82 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 141
Query: 85 GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119
F+ETSA NV+ F + I+ R S+ +
Sbjct: 142 DCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEA 176
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 26 IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
+IVY VTD+ SF + ++ R +D+V +LVGNK DL ++ VS + +A A
Sbjct: 82 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 141
Query: 85 GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
F+ETSA NV+ F + I+ R S+
Sbjct: 142 DCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 26 IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
+IVY VTD+ SF + ++ R +D+V +LVGNK DL ++ VS + +A A
Sbjct: 77 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 136
Query: 85 GIPFMETSAKDSTNVEQAFMAMAASIKDR 113
F+ETSA NV+ F + I+ R
Sbjct: 137 DCKFIETSAALHHNVQALFEGVVRQIRLR 165
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 62 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 120
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 121 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180
Query: 108 ASIK 111
A+++
Sbjct: 181 AALQ 184
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 114
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 115 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
Query: 108 ASIK 111
A+++
Sbjct: 175 AALQ 178
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 58 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 108 ASIK 111
A+++
Sbjct: 177 AALQ 180
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 59 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 117
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 118 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
Query: 108 ASIK 111
A+++
Sbjct: 178 AALQ 181
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 60 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 118
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 108 ASIK 111
A+++
Sbjct: 179 AALQ 182
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 59 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 117
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 118 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
Query: 108 ASIK 111
A+++
Sbjct: 178 AALQ 181
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 114
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 115 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
Query: 108 ASI 110
A++
Sbjct: 175 AAL 177
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYE 75
S +G +IVY + D+ SF + + ++ R + +D+V +LVGNK DL + VS E
Sbjct: 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE 132
Query: 76 TAKAFADEIGIPFMETSAKDSTNVEQAF 103
+A A F+ETSA NV + F
Sbjct: 133 EGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + V +S N+ ++W+ E+ + NV +LV
Sbjct: 78 WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVA 136
Query: 62 NKCDLTANKVVSYETA------------KAFADEI-GIPFMETSAKDSTNVEQAF-MAMA 107
NK DL +++ V E A +A A I ++E SAK V + F A
Sbjct: 137 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196
Query: 108 ASIKDRMASQ 117
A+++ R SQ
Sbjct: 197 AALQKRYGSQ 206
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 58 WDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ + E AK A+ IG +ME SAK V + F MA
Sbjct: 117 NKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 108 ASIK 111
A+++
Sbjct: 177 AALQ 180
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 83 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 141
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 83 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 141
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 75 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 133
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 134 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 63 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 121
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 58 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 116
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 60 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 118
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 119 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 58 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62 NKCDLTANKVVSYETAKAFADEI-------------GIPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK + + ++E SAK V + F MA
Sbjct: 117 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176
Query: 108 ASIKDR 113
A ++ R
Sbjct: 177 AGLQVR 182
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ + LLVG
Sbjct: 57 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVG 115
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 116 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 66 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 124
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 125 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ + LLVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + SF NV+ +W E+ R+ + LLVG
Sbjct: 57 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVG 115
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 116 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAG E + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 61 WDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 119
Query: 62 NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK A+ IG +ME SAK V + F MA
Sbjct: 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
Query: 108 ASIK 111
A+++
Sbjct: 180 AALQ 183
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y +I + V + SF NVK +W+ E+ YA NV LL+G
Sbjct: 71 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIG 129
Query: 62 NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
+ DL K + E + A EIG ++E SA ++ F
Sbjct: 130 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 26 IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
+IVY +TD+ SF + ++ R ++++ +LVGNK DL + VS +A A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 85 GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
F+ETSA NV++ F + ++ R S+
Sbjct: 145 DXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAG E + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 56 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + S+ NV+ +W E+ R+ + +LVG
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAA 108
K DL +K ++Y A A EI + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF---DE 171
Query: 109 SIKDRMASQPSMNNAR 124
+I+ + QP+ R
Sbjct: 172 AIRAVLCPQPTRQQKR 187
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAG E + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 56 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVG 61
WD GQ RFR++ Y RG I+ + D DQE K L N +D+ + L++G
Sbjct: 72 WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 131
Query: 62 NKCDL 66
NK DL
Sbjct: 132 NKRDL 136
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 78 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 136
Query: 62 NKCDLTANKVVSYETAKAFADEI-------------GIPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK + + ++E SAK V + F MA
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
Query: 108 ASIK 111
A ++
Sbjct: 197 AGLQ 200
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 26 IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
+IVY +TD+ SF + ++ R ++++ +LVGNK DL + VS +A A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 85 GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
F+ETSA NV++ F + ++ R S+
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN---VNKLLV 60
DTAG + ++ S Y+ G + I+V+DV+ ESF + K W + D + +LV
Sbjct: 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138
Query: 61 GNKCDLTANK-VVSYETAKAFADEIGIPFMETSA-KDSTNVEQAFMAMAASI 110
NK DL + V + A+ +A + F + SA + + F+++A +
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y I++ + + +S N+ ++W E+ + NV +LVG
Sbjct: 78 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXP-NVPIILVG 136
Query: 62 NKCDLTANKVVSYETAKAFADEI-------------GIPFMETSAKDSTNVEQAF-MAMA 107
NK DL ++ E AK + + ++E SAK V + F MA
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
Query: 108 ASIK 111
A ++
Sbjct: 197 AGLQ 200
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVG 61
WD GQ RFR++ Y RG I+ + D DQE K L N +D+ + L++G
Sbjct: 81 WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 140
Query: 62 NKCDL 66
NK DL
Sbjct: 141 NKRDL 145
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAG E + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 59 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 117
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 118 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 25 IIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE 83
+IV+ VTD+ SF+ V + L + ++ +LVGNK DL ++ VS E + A
Sbjct: 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 159
Query: 84 IGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
+ +ETSA N + F I+ R
Sbjct: 160 LSCKHIETSAALHHNTRELFEGAVRQIRLR 189
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y ++ ++I + + +S NV++ W+ E+ + V +LVG
Sbjct: 63 WDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-GVPIILVG 121
Query: 62 NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMA 105
K DL + V+ + ++ AD+IG + E SAK V + F A
Sbjct: 122 CKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEA 178
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 26 IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
+IVY +TD+ SF + ++ R ++++ +LVGNK DL + VS +A A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 144
Query: 85 GIPFMETSAKDSTNVEQAFMAMAASIKDR 113
F+ETSA NV++ F + ++ R
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQVRLR 173
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAG E + + Y +I + + SF NV+ +W E+ R+ N +LVG
Sbjct: 83 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 141
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 26 IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
+IVY +TD+ SF + ++ R ++++ +LVGNK DL + VS +A A
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 175
Query: 85 GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
F+ETSA NV++ F + ++ R S+
Sbjct: 176 DCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 25 IIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE 83
+IV+ VTD+ SF+ V + L + ++ +LVGNK DL ++ VS E + A
Sbjct: 79 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 138
Query: 84 IGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
+ +ETSA N + F I+ R
Sbjct: 139 LSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 25 IIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE 83
+IV+ VTD+ SF+ V + L + ++ +LVGNK DL ++ VS E + A
Sbjct: 89 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 148
Query: 84 IGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
+ +ETSA N + F I+ R
Sbjct: 149 LSCKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
WD GQ++ R + YY G G+I V D D++ + +Q L+ I DR D + L+
Sbjct: 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 429
Query: 61 GNKCDL 66
NK DL
Sbjct: 430 ANKQDL 435
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVG 61
WD GQ RFR++ Y RG + I+ + D D+E + L N +D+ + L++G
Sbjct: 72 WDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLG 131
Query: 62 NKCDL 66
NK DL
Sbjct: 132 NKRDL 136
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDT+G + + Y + ++I +D++ E+ ++V K+W EI + N LLVG
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 139
Query: 62 NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSAKDSTN 98
K DL + VSY+ A +IG ++E SA S N
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
WD GQ++ R + YY G G+I V D D++ + +Q L+ I DR D + L+
Sbjct: 62 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 120
Query: 61 GNKCDL 66
NK DL
Sbjct: 121 ANKQDL 126
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDT+G + + Y + ++I +D++ E+ ++V K+W EI + N LLVG
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 134
Query: 62 NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSAKDSTN 98
K DL + VSY+ A +IG ++E SA S N
Sbjct: 135 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
WD GQ++ R + YY G G+I V D D++ + +Q L+ I DR D + L+
Sbjct: 49 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 107
Query: 61 GNKCDL 66
NK DL
Sbjct: 108 ANKQDL 113
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
WD GQ++ R + YY G G+I V D D++ + +Q L+ I DR D + L+
Sbjct: 61 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 119
Query: 61 GNKCDL 66
NK DL
Sbjct: 120 ANKQDL 125
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAG E + + Y +I + + SF++V+ +W E+ R+ N +LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVG 266
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
WD GQ++ R + YY G G+I V D D++ + +Q L+ I DR D + L+
Sbjct: 49 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 107
Query: 61 GNKCDL 66
NK DL
Sbjct: 108 ANKQDL 113
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAG E + + Y +I + + SF++V+ +W E+ R+ N +LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVG 266
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAG E + + Y +I + + SF++V+ +W E+ R+ N +LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVG 266
Query: 62 NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EIG + ++E SA ++ F
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
WD GQ++ R + YY G G+I V D D++ + +Q L+ I DR D + L+
Sbjct: 49 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAI-ILIF 107
Query: 61 GNKCDL 66
NK DL
Sbjct: 108 ANKQDL 113
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
WDT+G + + Y + ++I +D++ E+ ++V K+W EI + N LLVG
Sbjct: 60 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 118
Query: 62 NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSAKDSTN 98
K DL + VSY+ A +IG ++E SA S N
Sbjct: 119 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + S+ NV+ +W E+ R+ + +LVG
Sbjct: 62 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVG 120
Query: 62 NKCDLTANK------------VVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EI + ++E SA ++ F
Sbjct: 121 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y +I + + S+ NV+ +W E+ R+ + +LVG
Sbjct: 63 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVG 121
Query: 62 NKCDLTANK------------VVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
K DL +K ++Y A A EI + ++E SA ++ F
Sbjct: 122 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGN 62
DTAGQ+ F + Y ++ + V SF NV ++W+ EI R +LVG
Sbjct: 74 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGT 132
Query: 63 KCDLTAN------------KVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF-MAMAA 108
+ DL + K V E AK A+EI ++E SA N+++ F A+ A
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVA 192
Query: 109 SIK 111
I+
Sbjct: 193 GIQ 195
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y + +++ + V ++ SF+N+ +W EI Y D +LVG
Sbjct: 76 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVG 134
Query: 62 NKCDL 66
K DL
Sbjct: 135 LKVDL 139
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
WD G ++ R + YY G G+I V D D++ + +Q L+ I DR D + L+
Sbjct: 52 WDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 110
Query: 61 GNKCDL 66
NK DL
Sbjct: 111 ANKQDL 116
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
WD G ++ R + YY G G+I V D D++ + +Q L+ I DR D + L+
Sbjct: 62 WDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 120
Query: 61 GNKCDL 66
NK DL
Sbjct: 121 ANKQDL 126
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 34/134 (25%)
Query: 3 WDTAGQE---RFR------TITSSY-----YRG-----AHGIIIVYDVTDQESFNNVK-Q 42
WDTAGQE R R T+ +Y RG A +I + + SF NV+ +
Sbjct: 58 WDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAK 117
Query: 43 WLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFM 89
W E+ R+ N +LVG K DL +K ++Y A A EIG + ++
Sbjct: 118 WYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 176
Query: 90 ETSAKDSTNVEQAF 103
E SA ++ F
Sbjct: 177 ECSALTQRGLKTVF 190
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
WD G ++ R + YY G G+I V D D++ + +Q L+ I DR D + L+
Sbjct: 51 WDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 109
Query: 61 GNKCDL 66
NK DL
Sbjct: 110 ANKQDL 115
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
WDTAGQE + + Y + +++ + V ++ SF+N+ +W EI Y D +LVG
Sbjct: 75 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVG 133
Query: 62 NKCDL 66
K DL
Sbjct: 134 LKVDL 138
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVG 61
WDT+G + + Y + +++ +D++ E+ ++ +K+W EI Y + LL+G
Sbjct: 63 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIG 121
Query: 62 NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSA 93
K DL + +SYE A A ++G ++E SA
Sbjct: 122 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVG 61
WDT+G + + Y + +++ +D++ E+ ++ +K+W EI Y + LL+G
Sbjct: 64 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIG 122
Query: 62 NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSA 93
K DL + +SYE A A ++G ++E SA
Sbjct: 123 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 59 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 117
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 118 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 58 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 116
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 117 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 57 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 115
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 116 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 66 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 124
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 125 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVG 61
WDT+G + + Y + +++ +D++ E+ ++ +K+W EI Y + LL+G
Sbjct: 80 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIG 138
Query: 62 NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSA 93
K DL + +SYE A A ++G ++E SA
Sbjct: 139 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 59 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 117
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 118 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 63 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 121
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 122 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 63 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 121
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 122 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 60 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 118
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 119 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 58 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 116
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 117 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGN 62
DTAGQE + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGT 115
Query: 63 KCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
WD GQ+R R++ YYR G+I V D D+ ++ + ++ N L+
Sbjct: 49 WDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFA 108
Query: 62 NKCDL 66
NK DL
Sbjct: 109 NKQDL 113
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
WD GQ+R R++ YYR G+I V D D+ ++ + ++ N L+
Sbjct: 66 WDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFA 125
Query: 62 NKCDL 66
NK DL
Sbjct: 126 NKQDL 130
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
WD GQ+R R++ YYR G+I V D D+ ++ + ++ N L+
Sbjct: 66 WDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFA 125
Query: 62 NKCDL 66
NK DL
Sbjct: 126 NKQDL 130
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAG E + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 60 FDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 118
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 119 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--- 57
+ WD GQE R+ ++YY II+V D D+E K+ L + A +++ K
Sbjct: 63 LMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRM--LAHEDLRKAAV 120
Query: 58 LLVGNKCD----LTANKVVSYETAKAFADE 83
L+ NK D +TA ++ Y T + D
Sbjct: 121 LIFANKQDMKGCMTAAEISKYLTLSSIKDH 150
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
+DTAG E + + Y ++ + V SF NVK+ W+ EI + LLVG
Sbjct: 56 FDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62 NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
+ DL K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
WD GQ++ R + Y++ G+I V D D+E N ++ L + A D + L+
Sbjct: 214 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLV 271
Query: 60 VGNKCDL 66
NK DL
Sbjct: 272 FANKQDL 278
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
WD GQ+R R + Y++ G+I V D D+E V L ++ D + LL
Sbjct: 66 WDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKM--LLVDELRDAVLLL 123
Query: 60 VGNKCDLTANKVVSYETAK 78
NK DL +S T K
Sbjct: 124 FANKQDLPNAMAISEMTDK 142
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
WD GQ++ R + Y++ G+I V D D+E N ++ L + A D + L+
Sbjct: 49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLV 106
Query: 60 VGNKCDL 66
NK DL
Sbjct: 107 FANKQDL 113
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
WD GQ++ R + Y++ G+I V D D+E N ++ L + A D + L+
Sbjct: 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLV 123
Query: 60 VGNKCDL 66
NK DL
Sbjct: 124 FANKQDL 130
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
WD GQ++ R + Y++ G+I V D D+E N ++ L + A D + L+
Sbjct: 65 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLV 122
Query: 60 VGNKCDL 66
NK DL
Sbjct: 123 FANKQDL 129
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 18 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD---NVNKLLVGNKCDLTANKVVSY 74
Y AH ++VY V ++SF++ +L + +A + ++ LL+GNK D+ + V+
Sbjct: 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK 147
Query: 75 ETAKAFADEIGIPFMETSA-KDSTNVEQAF 103
A A G F E SA D +V+ F
Sbjct: 148 AEGVALAGRFGCLFFEVSACLDFEHVQHVF 177
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
WD GQ++ R + YY G+I V D D+E ++ ++ L+ I+ + L+
Sbjct: 66 WDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFA 125
Query: 62 NKCDL 66
NK DL
Sbjct: 126 NKQDL 130
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--- 57
+ WD GQE R+ ++YY +I+V D TD+E + ++ L ++ A +++ K
Sbjct: 68 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGL 125
Query: 58 LLVGNKCDL 66
L+ NK D+
Sbjct: 126 LIFANKQDV 134
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--- 57
+ WD GQE R+ ++YY +I+V D TD+E + ++ L ++ A +++ K
Sbjct: 69 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGL 126
Query: 58 LLVGNKCDL 66
L+ NK D+
Sbjct: 127 LIFANKQDV 135
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--- 57
+ WD GQE R+ ++YY +I+V D TD+E + ++ L ++ A +++ K
Sbjct: 63 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGL 120
Query: 58 LLVGNKCDL 66
L+ NK D+
Sbjct: 121 LIFANKQDV 129
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--- 57
+ WD GQE R+ ++YY +I+V D TD+E + ++ L ++ A +++ K
Sbjct: 63 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGL 120
Query: 58 LLVGNKCDL 66
L+ NK D+
Sbjct: 121 LIFANKQDV 129
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
WD GQ++ R + YY+ II V D D++ ++ L + ++ N L+
Sbjct: 66 WDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFA 125
Query: 62 NKCDLTANKVVSYETAK 78
NK DL +S T K
Sbjct: 126 NKHDLPQAMSISEVTEK 142
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 42
WD GQ+R R++ YY G+I V D D+ ++
Sbjct: 66 WDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEARE 105
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
WD G ++ R + Y++ G+I V D D+E N ++ L + A D + L+
Sbjct: 51 WDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLV 108
Query: 60 VGNKCDL 66
NK DL
Sbjct: 109 FANKQDL 115
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTD----QESFNNVKQWLNE 46
WD GQ++ R + Y++ G+I V D D QES + +++ L E
Sbjct: 78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE 125
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----ESFNNVKQWLNE 46
WD GQ++ R + Y++ G+I V D D+ E+ + + + LNE
Sbjct: 69 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 116
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD----NVNKL 58
+D G + R + +Y +GI+ + D D E K+ E+D +D NV L
Sbjct: 71 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPIL 127
Query: 59 LVGNKCD 65
++GNK D
Sbjct: 128 ILGNKID 134
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLL 59
WD GQ+ R+ +Y+ G+I V D D++ + ++ L + +R A + L+
Sbjct: 67 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LI 124
Query: 60 VGNKCDL 66
NK DL
Sbjct: 125 FANKQDL 131
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD----NVNKL 58
+D G + R + +Y +GI+ + D D E K+ E+D +D NV L
Sbjct: 74 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPIL 130
Query: 59 LVGNKCD 65
++GNK D
Sbjct: 131 ILGNKID 137
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLL 59
WD GQ+ R+ +Y+ G+I V D D++ + ++ L + +R A + L+
Sbjct: 67 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LI 124
Query: 60 VGNKCDL 66
NK DL
Sbjct: 125 FANKQDL 131
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 27 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 86
++ D+ D ++ ++ + + N +LV NK DL K + K E+G+
Sbjct: 84 VIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKK-MRKELGV 140
Query: 87 PFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM--------NNARPPTVQIKGQPVAQK 138
P + T+AK VE+ +A + ++ + P + + + ++G P+A+K
Sbjct: 141 PVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELLRGTPLAEK 200
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLL 59
WD GQ+ R+ +Y+ G+I V D D++ + ++ L + +R A + L+
Sbjct: 65 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LI 122
Query: 60 VGNKCDL 66
NK DL
Sbjct: 123 FANKQDL 129
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 32.7 bits (73), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
+D G E+ R + +Y +GI+ + D D K LN + D S NV L++
Sbjct: 84 FDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETIS-NVPILIL 142
Query: 61 GNKCDLT 67
GNK D T
Sbjct: 143 GNKIDRT 149
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---ASDNVNKLL 59
+D +GQ R+R + YY+ II V D +D+ K+ L+ + + + L
Sbjct: 72 FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILF 131
Query: 60 VGNKCDL 66
NK DL
Sbjct: 132 FANKMDL 138
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD----NVNKL 58
+D G + R + +Y +GI+ + D D E K+ E+D +D NV L
Sbjct: 65 FDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPIL 121
Query: 59 LVGNKCD 65
++GNK D
Sbjct: 122 ILGNKID 128
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLL 59
WD GQ+ R+ +Y+ G+I V D D++ + ++ L + +R A + L+
Sbjct: 67 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATL--LI 124
Query: 60 VGNKCDL 66
NK DL
Sbjct: 125 FANKQDL 131
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 9 ERFR-TITSSYYR-GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN 54
E+ R TS YR G HG+ I Q ++ WLNEI Y DN
Sbjct: 247 EKLRQAFTSIQYRQGFHGLNIFAYTAXQSAYTECNDWLNEIRFYIEDN 294
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 34 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 88
+E + L +D + D V K DL T + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 89 M 89
M
Sbjct: 182 M 182
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 34 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 88
+E + L +D + D V K DL T + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 89 M 89
M
Sbjct: 182 M 182
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 34 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 88
+E + L +D + D V K DL T + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 89 M 89
M
Sbjct: 182 M 182
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 34 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 88
+E + L +D + D V K DL T + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 89 M 89
M
Sbjct: 182 M 182
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 34 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 88
+E + L +D + D V K DL T + SYE AK FA+E G P
Sbjct: 100 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 158
Query: 89 M 89
M
Sbjct: 159 M 159
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 34 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 88
+E + L +D + D V K DL T + SYE AK FA+E G P
Sbjct: 100 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 158
Query: 89 M 89
M
Sbjct: 159 M 159
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 34 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 88
+E + L +D + D V K DL T + SYE AK FA+E G P
Sbjct: 100 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 158
Query: 89 M 89
M
Sbjct: 159 M 159
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 42
WD GQ + R SY+ +I V D D++ F Q
Sbjct: 66 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 105
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 42
WD GQ + R SY+ +I V D D++ F Q
Sbjct: 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 104
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 42
WD GQ + R SY+ +I V D D++ F Q
Sbjct: 53 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV-- 60
WD GQ R YY +I V D D++ K L + + + K ++
Sbjct: 51 WDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL--VAMLEEEELRKAILVV 108
Query: 61 -GNKCDLTANKVVSYETAKAFADEIGIP--------FMETSAKDSTNVEQAFMAMAASIK 111
NK D+ T A+ +G+P +TSA T +++A + ++K
Sbjct: 109 FANKQDMEQAM-----TPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 163
Query: 112 DR 113
R
Sbjct: 164 SR 165
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLL 59
WD G + R+ +Y+ G+I V D D++ + ++ L + +R A + L+
Sbjct: 50 WDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LI 107
Query: 60 VGNKCDL 66
NK DL
Sbjct: 108 FANKQDL 114
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 39 NVKQWLNEIDRYASDNVNKLLVGNKCDLTA----NKVVSYETAKAFADEIGIPFMETSAK 94
+V +++ +D Y DN++KL+ D NK + T F+ G+P+ E +K
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180
Query: 95 DSTNVEQAFMAMAASIKDRMAS 116
S + Q + A+ KD AS
Sbjct: 181 RSEALLQVVRSGASLKKDAQAS 202
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 16 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75
S +R +V ++ D FN ++ + R+A+DN LLVGNK DL + V Y
Sbjct: 63 SMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFAADN-PILLVGNKADLLP-RSVKYP 118
Query: 76 TA----KAFADEIGI 86
+ A+E+G+
Sbjct: 119 KLLRWMRRMAEELGL 133
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVG 61
WD AG+E F + + + VYD++ Q + K WL I AS + +LVG
Sbjct: 59 WDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVG 117
Query: 62 NKCDLTANK 70
D++ K
Sbjct: 118 THLDVSDEK 126
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 39 NVKQWLNEIDRYASDNVNKLLVGNKCDLTA----NKVVSYETAKAFADEIGIPFMETSAK 94
+V +++ +D Y DN++KL+ D NK + T F+ G+P+ E +K
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180
Query: 95 DSTNVEQAFMAMAASIKDRMAS 116
S + Q + A+ KD AS
Sbjct: 181 RSEALLQVVRSGASLKKDAQAS 202
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 27 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 71
+V + D FN WL + R+ +N LLVGNK DL V
Sbjct: 72 LVVKIVDIFDFNG--SWLPGLHRFVGNN-KVLLVGNKADLIPKSV 113
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVG 61
WD AG+E F + + + VYD++ Q + K WL I AS + +LVG
Sbjct: 61 WDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVG 119
Query: 62 NKCDLTANK 70
D++ K
Sbjct: 120 THLDVSDEK 128
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE 35
WD GQ R YY +I V D TD++
Sbjct: 67 WDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD 99
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 42
WD G + R SY+ +I V D D++ F Q
Sbjct: 53 WDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY--------ASDN 54
+D G ++FR + +YY +I V D +D VK + + ++
Sbjct: 68 FDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGR 127
Query: 55 VNKLLVGNKCDLTANK 70
V L NK D K
Sbjct: 128 VPFLFFANKMDAAGAK 143
>pdb|3O3M|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3M|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3N|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3N|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3O|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
(R)-2- Hydroxyisocaproate
Length = 408
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 25/92 (27%)
Query: 14 ITSSYYRGAHGIIIVYDVTDQES--------FNNVKQWLNEIDRYASDNVNKLLVGNKCD 65
+T S Y H + Y+V D + FNNV L+ + +Y D+ LV KCD
Sbjct: 285 MTGSVY--PHAWALQYEVNDLDGMAVAYSTMFNNVN--LDRMTKYRVDS----LVEGKCD 336
Query: 66 ---------LTANKVVSYETAKAFADEIGIPF 88
++ YE + A+E G+P+
Sbjct: 337 GAFYHMNRSCKLMSLIQYEMQRRAAEETGLPY 368
>pdb|2UZ8|A Chain A, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
pdb|2UZ8|B Chain B, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
Length = 174
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY 50
Y G H I+ V ++E + NV +W I Y
Sbjct: 121 YYGLHRFIVDLTVQEKEKYLNVSRWFCHIQHY 152
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
WD GQ R Y+ +I V D TD++ K L + D + K L+
Sbjct: 71 WDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYAL--LDEDELRKSLLLI 128
Query: 60 VGNKCDL 66
NK DL
Sbjct: 129 FANKQDL 135
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 74 YETAKAFADEIGIPFME 90
YE KA+ D++GIP+ E
Sbjct: 235 YEQVKAYLDDLGIPYTE 251
>pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E.
Coli Aspartate Aminotransferase
pdb|1TOI|A Chain A, Hydrocinnamic Acid-Bound Structure Of Hexamutant + A293d
Mutant Of E. Coli Aspartate Aminotransferase
Length = 396
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 93 AKDSTNVEQAFMAMAASIKDRMASQPS 119
A DS V++AF M A+I+D +S P+
Sbjct: 262 AADSETVDRAFSQMKAAIRDNYSSPPA 288
>pdb|3N9T|A Chain A, Cryatal Structure Of Hydroxyquinol 1,2-Dioxygenase From
Pseudomonas Putida Dll-E4
Length = 290
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK 41
++T+ RF+ I S R H + ++T+QE F ++
Sbjct: 20 FETSPNPRFKQIMQSLVRHLHDFVSEVELTEQEWFEGIR 58
>pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d
Mutant Of E. Coli Aspartate Aminotransferase
pdb|1TOG|B Chain B, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d
Mutant Of E. Coli Aspartate Aminotransferase
Length = 396
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 93 AKDSTNVEQAFMAMAASIKDRMASQPS 119
A DS V++AF M A+I+D +S P+
Sbjct: 262 AADSETVDRAFGQMKAAIRDNYSSPPA 288
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 56 NKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
N LL NK DL + + + K +G+ + SA +E+ A++ ++KD+
Sbjct: 114 NLLLALNKMDLAKSLGIEIDVDK-LEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKT 172
Query: 116 SQPSMNNARP 125
++ N P
Sbjct: 173 AEIKYPNFEP 182
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 18/120 (15%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV-- 60
WD G R YY +I V D D++ K L + + + K ++
Sbjct: 53 WDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL--VAMLEEEELRKAILVV 110
Query: 61 -GNKCDLTANKVVSYETAKAFADEIGIP--------FMETSAKDSTNVEQAFMAMAASIK 111
NK D+ T+ A+ +G+P +TSA T +++A + ++K
Sbjct: 111 FANKQDMEQAM-----TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 165
>pdb|2C7T|A Chain A, Crystal Structure Of The Plp-Bound Form Of Btrr, A Dual
Functional Aminotransferase Involved In Butirosin
Biosynthesis.
pdb|2C81|A Chain A, Crystal Structures Of The Plp- And Pmp-Bound Forms Of
Btrr, A Dual Functional Aminotransferase Involved In
Butirosin Biosynthesis
Length = 418
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 37 FNNVKQWLNEIDRYASDNVNKLLVGNKCDL----TANKVVSYETAKAFADEIGIPFMETS 92
F++ +W DR + ++ N+ + T + + + AKAFAD G+P+ +
Sbjct: 5 FDHWPEWPQHSDR-TRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPT 63
Query: 93 AKDSTNVEQAFMAMAASIKDRM 114
ST + A A+ D +
Sbjct: 64 TSGSTALMLALEALGIGEGDEV 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.126 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,828,196
Number of Sequences: 62578
Number of extensions: 130081
Number of successful extensions: 917
Number of sequences better than 100.0: 370
Number of HSP's better than 100.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 376
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)