BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032243
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 275 bits (702), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 127/142 (89%), Positives = 137/142 (96%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL+EIDRYASDNVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT N+ + YETAKAFADEIGIPFMETSAKD+TNVEQAFMAM+ASIK+RMASQP+ NN
Sbjct: 122 KSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNN 181
Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
ARPPTVQI+GQPVAQK+GCCST
Sbjct: 182 ARPPTVQIRGQPVAQKNGCCST 203
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 268 bits (685), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 126/142 (88%), Positives = 135/142 (95%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLTANKVV+ ETAKAFADE+GIPFMETSAK++TNV+QAFMAMAASIKDRMASQP+ N
Sbjct: 122 KSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAAN 181
Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
ARP TVQI+GQPV QK+ CCS+
Sbjct: 182 ARPATVQIRGQPVNQKTSCCSS 203
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 116/141 (82%), Positives = 129/141 (91%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDL N+VVSYE KA ADEIGIPF+ETSAKD+TNVE+AFM MA IK+RMASQP+ N
Sbjct: 122 KCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNA 181
Query: 123 ARPPTVQIKGQPVAQKSGCCS 143
++P TVQ++GQPVAQ+S CCS
Sbjct: 182 SKPATVQMRGQPVAQQSSCCS 202
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 117/142 (82%), Positives = 132/142 (92%), Gaps = 1/142 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+ YDVTD ESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDLT+ KVVS ETAKAFADE+GIPF+ETSAK++TNVE+AFMAM A+IK RMASQP+
Sbjct: 122 KCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-GG 180
Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
++PPTVQI+GQPV Q+SGCCS+
Sbjct: 181 SKPPTVQIRGQPVNQQSGCCSS 202
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 117/142 (82%), Positives = 131/142 (92%), Gaps = 1/142 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+ YDVTD ESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT+ KVVS ETAKAFADE+GIPF+ETSAK++TNVE+AFMAM A+IK RMASQP+
Sbjct: 122 KNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-GG 180
Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
A+PPTVQI+GQPV Q+SGCCS+
Sbjct: 181 AKPPTVQIRGQPVNQQSGCCSS 202
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 110/141 (78%), Positives = 121/141 (85%), Gaps = 1/141 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT+ KVV Y AKAFADEIGIPF+ETSAK++TNVEQAFM MAA IK+RMASQP
Sbjct: 122 KSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTK 181
Query: 123 ARPPTVQIK-GQPVAQKSGCC 142
A P V+ + G+P+ KS C
Sbjct: 182 AGGPVVRPQEGKPINSKSSSC 202
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 103/140 (73%), Positives = 113/140 (80%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM +
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
A V+I+ PV Q G C
Sbjct: 185 AEKSNVKIQSTPVKQSGGGC 204
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 103/140 (73%), Positives = 113/140 (80%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM +
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
A V+I+ PV Q G C
Sbjct: 185 AEKSNVKIQSTPVKQSGGGC 204
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 103/140 (73%), Positives = 113/140 (80%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM +
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
A V+I+ PV Q G C
Sbjct: 185 AEKSNVKIQSTPVKQSGGGC 204
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 103/140 (73%), Positives = 113/140 (80%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM +
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
A V+I+ PV Q G C
Sbjct: 185 AEKSNVKIQSTPVKQSGGGC 204
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 219 bits (558), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 102/140 (72%), Positives = 112/140 (80%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQ SFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM +
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
A V+I+ PV Q G C
Sbjct: 185 AEKSNVKIQSTPVKQSGGGC 204
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/141 (73%), Positives = 113/141 (80%), Gaps = 1/141 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDLT KVV Y TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM +
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGG 181
Query: 123 ARPPTVQIKGQPV-AQKSGCC 142
+ V I+ PV + GCC
Sbjct: 182 SEKSNVNIQSTPVKSSGGGCC 202
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/141 (76%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT KVV Y+ AKAFADEIGIPF+ETSAK++TNVEQAFM MAA IK+RMASQP
Sbjct: 122 KSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPK 181
Query: 123 ARPPTVQ-IKGQPVAQKSGCC 142
P V+ +G+P+ KS C
Sbjct: 182 PGGPVVRPTEGKPINNKSSSC 202
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Length = 205
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 101/141 (71%), Positives = 116/141 (82%), Gaps = 1/141 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT KVV + TAK +AD++GIPF+ETSAK++TNVEQAFM MAA IK+RM + ++
Sbjct: 125 KSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASD 184
Query: 123 ARPPTVQIKGQPV-AQKSGCC 142
++P PV A K GCC
Sbjct: 185 SKPSVKINSSTPVSANKGGCC 205
>sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1
SV=1
Length = 205
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/141 (69%), Positives = 117/141 (82%), Gaps = 1/141 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGIIIVYD T+ ESFNNVKQWL+EIDRYA+++V KLL+GN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN- 121
K D+ +KVVS ET +A ADE+GIPF+ETSAKDS NVEQAF+ +A IK +M SQ + N
Sbjct: 122 KNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANK 181
Query: 122 NARPPTVQIKGQPVAQKSGCC 142
+ P TVQ+KGQP+ Q +G C
Sbjct: 182 TSGPGTVQMKGQPIQQNNGGC 202
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/140 (71%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT KVV TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM +
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
R P ++I PV Q G C
Sbjct: 182 ER-PNLKIDSTPVKQAGGGC 200
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 97/147 (65%), Positives = 118/147 (80%), Gaps = 5/147 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGIIIVYD+TD ESFNNVKQWL+EIDRYA+D+V KLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI-KDRMASQPSMN 121
KCDL N+ V A+A+A E+GIPF+ETSAK+S NVE+AF+AM+A+I K + SQ ++
Sbjct: 122 KCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALE 181
Query: 122 NARPPTVQIKGQPVAQK----SGCCST 144
VQ+KG+P+ Q+ S CCST
Sbjct: 182 RKPSNVVQMKGRPIQQEQQKSSRCCST 208
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1
Length = 201
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRT+TSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT KVV TAK FAD +G+PF+ETSAK++TNVEQAFM MAA IK RM +
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
R P ++I PV SG C
Sbjct: 182 ER-PNLKIDSTPVKSASGGC 200
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 99/140 (70%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT KVV TAK FAD +G+PF+ETSAK++TNVEQAFM MAA IK RM +
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
R P ++I PV SG C
Sbjct: 182 ER-PNLKIDSTPVKPASGGC 200
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/140 (70%), Positives = 109/140 (77%), Gaps = 1/140 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT KVV TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM +
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
R P ++I PV G C
Sbjct: 182 ER-PNLKIDSTPVKPAGGGC 200
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/140 (70%), Positives = 109/140 (77%), Gaps = 1/140 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT KVV TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM +
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
R P ++I PV G C
Sbjct: 182 ER-PNLKIDSTPVKPAGGGC 200
>sp|P34139|RAB1A_DICDI Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A
PE=2 SV=2
Length = 202
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/141 (68%), Positives = 112/141 (79%), Gaps = 1/141 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTD+ +F NV+QWL EIDR+A +NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM-ASQPSMN 121
K DL A KVV + TAKAFAD + IPF+ETSAK STNVEQAFM MA IK+R+ ASQP+
Sbjct: 122 KSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQT 181
Query: 122 NARPPTVQIKGQPVAQKSGCC 142
+ V P++ KSGCC
Sbjct: 182 VDKNKVVPGSSAPISPKSGCC 202
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/140 (70%), Positives = 109/140 (77%), Gaps = 1/140 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQER RTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT KVV TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM +
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
R P ++I PV Q G C
Sbjct: 182 ER-PNLKIDSTPVKQAGGGC 200
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 109/140 (77%), Gaps = 1/140 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTD+ES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT KVV TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM +
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG 181
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
R P ++I PV G C
Sbjct: 182 ER-PNLKIDSTPVKPAGGGC 200
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ypt-1
PE=3 SV=1
Length = 203
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 109/142 (76%), Gaps = 2/142 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGI +VYDVTD +SFNNVKQWL EIDRYA++ VNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K D+T KVV Y AK FAD +GIPF+ETSAK+++NVEQAF+ MA IK+RM S + NN
Sbjct: 122 KSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNN 181
Query: 123 ARPPTVQIKGQPVAQKS--GCC 142
+ G V+ S GCC
Sbjct: 182 TKASVNVSPGHGVSNNSSGGCC 203
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1
PE=3 SV=1
Length = 201
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 112/145 (77%), Gaps = 10/145 (6%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL+EIDRYA +NVNKLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLTA +VVS + AK FA+ +GI F+ETSAK++ NVE+AFM MAA IK RMA+ P
Sbjct: 122 KSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPV--- 178
Query: 123 ARPPTVQIK---GQPVAQKSG--CC 142
P +K GQ V G CC
Sbjct: 179 --APKAGVKLTPGQQVPSNGGSKCC 201
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ+SFNNVKQWL EIDRYA + VN+LLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K D+ KVV Y AK FAD + IPF+ETSAKDSTNVEQAF+ M+ IK+RM + ++
Sbjct: 122 KSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASS 181
Query: 123 ARPPTVQI-KGQPVAQKSG-CC 142
+V++ +G V+Q S CC
Sbjct: 182 NAKSSVKVGQGTNVSQSSSNCC 203
>sp|Q92928|RAB1C_HUMAN Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5
SV=2
Length = 201
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/140 (67%), Positives = 107/140 (76%), Gaps = 1/140 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERF TITSSYYRGAHG ++VYDVTDQES+ NVKQWL EIDR+AS+NVNKLLVGN
Sbjct: 62 WDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DLT KVV TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK +M +
Sbjct: 122 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGG 181
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
R P ++I PV G C
Sbjct: 182 ER-PNLKIDSTPVKPAGGGC 200
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/145 (63%), Positives = 104/145 (71%), Gaps = 6/145 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+ V KLLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDL +VV Y+ AK FAD +PF+ETSA DSTNVE AF+ MA IK+ M SQ ++N
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM-SQQNLNE 180
Query: 123 ARPP-----TVQIKGQPVAQKSGCC 142
V +KGQ + G C
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGGC 205
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 104/142 (73%), Gaps = 3/142 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGAHGII+VYDVTD SFNNVKQW+ EI RYA D+V +LLVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS-QPSMN 121
KCDL K+V TA+ +AD +GIPF+ETSAK S NVEQAFM MA+ IK QP+ N
Sbjct: 122 KCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNN 181
Query: 122 NA-RPPTVQIKG-QPVAQKSGC 141
+ V+ G P+ +K C
Sbjct: 182 STYNAHVVKPTGFTPIGKKKKC 203
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 103/138 (74%), Gaps = 2/138 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSSYYRGA GII+VYD TDQ+SF NVKQW+ EIDRYA +NVNKLLVGN
Sbjct: 64 WDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGN 123
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K DL KVV AK+FA+ GIPF+ETSAK++TNVE+ F++MA IK+R+A
Sbjct: 124 KTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD--IQET 181
Query: 123 ARPPTVQIKGQPVAQKSG 140
+P V IK + + G
Sbjct: 182 PKPDEVDIKSKNKTKSGG 199
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 103/143 (72%), Gaps = 6/143 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI++VYDVTD++SF N++ W+ I+++A+D+VNK+L+GN
Sbjct: 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGN 128
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCD+ KVV K+ ADE GI F+ETSAK+S NVE+AF+++A IK RM P N
Sbjct: 129 KCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP---N 185
Query: 123 ARPPTVQIK---GQPVAQKSGCC 142
+P VQ G +K CC
Sbjct: 186 EQPQVVQPGTNLGANNNKKKACC 208
>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B
PE=2 SV=1
Length = 203
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 102/140 (72%), Gaps = 5/140 (3%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI++VYDVTD++SF +++ W+ I+++ASD+VNK+L+GN
Sbjct: 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGN 128
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCD+T KVV K+ ADE GI F+ETSAK+S NVE+AF+ +A IK RM P+
Sbjct: 129 KCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTPN--- 185
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
P I P +K+ CC
Sbjct: 186 --DPDHTICITPNNKKNTCC 203
>sp|O76173|RAB1C_DICDI Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C
PE=2 SV=1
Length = 201
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 93/109 (85%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERF+TIT+SYYRGAHG+IIVYD+T +SFN++K+WL ++DR+AS +V KL+VGN
Sbjct: 87 WDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGN 146
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
KCDL + + V ++ AK FADE+ IP METSAK+ST +++AF+ +A+ IK
Sbjct: 147 KCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIK 195
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 103/148 (69%), Gaps = 7/148 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++ASDNVNK+LVGN
Sbjct: 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGN 128
Query: 63 KCDLTANK-VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
K D+ +K V +A ADE GI F ETSAK + NVE+ F ++A IK R+A +
Sbjct: 129 KADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQ 188
Query: 122 NARPPTVQIK-----GQPVAQKSGCCST 144
A+ P++ IK G A KS CC +
Sbjct: 189 EAQ-PSITIKPADQSGNQAAAKSACCGS 215
>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1
SV=1
Length = 216
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 9/148 (6%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++ASDNVNK+LVGN
Sbjct: 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGN 128
Query: 63 KCDLTANK-VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
K D+ +K V +A ADE GI F ETSAK + NVE FM++A IK R+ +
Sbjct: 129 KADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLTETDT-- 186
Query: 122 NARPPTVQIKGQ------PVAQKSGCCS 143
A P ++I Q A+KS CCS
Sbjct: 187 KAEPQGIKITKQDTAASSSTAEKSACCS 214
>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Length = 217
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 101/150 (67%), Gaps = 10/150 (6%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITS+YYRGA GII+VYD+TD+ SFNNV+ W+ I+++ASDNVNK+LVGN
Sbjct: 67 WDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGN 126
Query: 63 KCDLTANK-VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS-- 119
K DL +K VVS +A ADE G F ETSAKD+ +VE+AF+A+A + RM + +
Sbjct: 127 KLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQ 186
Query: 120 ------MNNARPPTVQIKGQPV-AQKSGCC 142
+A P G P AQ CC
Sbjct: 187 QLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216
>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1
SV=1
Length = 216
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 102/151 (67%), Gaps = 12/151 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++ASDNVNK+LVGN
Sbjct: 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGN 128
Query: 63 KCDLTANK-VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
K D+ +K V +A ADE GI F ETSAK + NVE+ F ++ IK R++ S
Sbjct: 129 KADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDS-- 186
Query: 122 NARPPTVQIK--------GQPVAQKSGCCST 144
A P T++I GQ QKS CC T
Sbjct: 187 RAEPATIKISQTDQAAGAGQAT-QKSACCGT 216
>sp|Q54FL2|RABG2_DICDI Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3
SV=2
Length = 197
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 94/122 (77%), Gaps = 2/122 (1%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSS+YRGAHG+++ YDVTDQ ++NNV+ W+ EI RYA V+++LVGN
Sbjct: 60 WDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGN 119
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI-KDRM-ASQPSM 120
KCDL K+V+ A+ +AD +GIPFME SA NVE+AFMAMA I ++ M S+PS+
Sbjct: 120 KCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPSV 179
Query: 121 NN 122
N
Sbjct: 180 VN 181
>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1
SV=1
Length = 218
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 101/150 (67%), Gaps = 11/150 (7%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++ASD+VNK+LVGN
Sbjct: 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGN 128
Query: 63 KCDLTANK-VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
K D+ +K V +A ADE GI F ETSAK + NVEQ F+++A IK R+ S
Sbjct: 129 KADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQRLT--ESDT 186
Query: 122 NARPPTVQIKGQ--------PVAQKSGCCS 143
A P ++I Q +KS CCS
Sbjct: 187 KAEPQGIKITKQDANKASSSSTNEKSACCS 216
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 101/150 (67%), Gaps = 10/150 (6%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++ASD+VNK+LVGN
Sbjct: 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGN 128
Query: 63 KCDLTANK-VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
K D+ +K V +A ADE G+ F ETSAK + NVE+ F ++A IK R+A +
Sbjct: 129 KADMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDA-- 186
Query: 122 NARPPTVQIK-------GQPVAQKSGCCST 144
A P T++I QKS CC T
Sbjct: 187 RAEPQTIKINQSDQGAGTSQATQKSACCGT 216
>sp|Q54E92|RABG1_DICDI Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3
SV=1
Length = 196
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 96/141 (68%), Gaps = 6/141 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTITSS+YRGAHG+++ YDVTDQ ++NNV W+ EI RY V+++LVGN
Sbjct: 61 WDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGN 120
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDL K+V+ A+ +AD +GIPF+ETSA NVE+AFMAMA I + +
Sbjct: 121 KCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIY-----RNHIGG 175
Query: 123 ARPPTVQ-IKGQPVAQKSGCC 142
++P V+ + G P K C
Sbjct: 176 SKPSVVKPVCGSPPRTKKNIC 196
>sp|P41924|RYL1_YARLI Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL1 PE=3 SV=1
Length = 203
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 94/140 (67%), Gaps = 1/140 (0%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI++VYDVTD++SFNN++ W + YA++ V +LVGN
Sbjct: 65 WDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGN 124
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCDL +VVS E +A AD+ GIPF+E S+K + NVE+ F ++A I+D +A N
Sbjct: 125 KCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKG-NE 183
Query: 123 ARPPTVQIKGQPVAQKSGCC 142
+ + I S CC
Sbjct: 184 SGSGGINIAEGEENSASKCC 203
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 88/109 (80%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GI+++YDVTD++SF+NV+ W + ++++AS+NV K+L+GN
Sbjct: 63 WDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGN 122
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
KCD + VS+E +A ADE+G+ F+E SAK + NV++AF +A IK
Sbjct: 123 KCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIK 171
>sp|Q9TVU5|RAB1_THEPA Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1
Length = 220
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 97/129 (75%), Gaps = 3/129 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
WDTAGQERFRTITS+YYRGAHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+G
Sbjct: 61 WDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIG 120
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
NK DL ++VVS + AK A++ + ++E SAK +NVE+AF +A ++KD++ PS
Sbjct: 121 NKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPS-- 178
Query: 122 NARPPTVQI 130
NA TV +
Sbjct: 179 NAPASTVSL 187
>sp|Q9JKM7|RAB37_MOUSE Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2
Length = 223
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%), Gaps = 7/143 (4%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFR++T +YYR A ++++YD+T+Q SF+N++ WL EI YA +V +L+GN
Sbjct: 84 WDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGN 143
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
K D+++ +V+ E + A E G+PFMETSAK NVE AF+A+A +K R QP
Sbjct: 144 KADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQPD--- 200
Query: 123 ARPPTVQIKGQPVAQK--SGCCS 143
P+ QI+ +QK S CCS
Sbjct: 201 --EPSFQIRDYVESQKKRSSCCS 221
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 89/129 (68%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+ I AS V +LL+GN
Sbjct: 62 WDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCD+ A + V E A A E GI F ETSAK S NV++AF ++A I + + NN
Sbjct: 122 KCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNN 181
Query: 123 ARPPTVQIK 131
+PP+ +K
Sbjct: 182 NKPPSTDLK 190
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 89/129 (68%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+ I AS V +LL+GN
Sbjct: 62 WDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGN 121
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
KCD+ A + V E A A E GI F ETSAK S NV++AF ++A I + + S N
Sbjct: 122 KCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNG 181
Query: 123 ARPPTVQIK 131
+PP+ +K
Sbjct: 182 NKPPSTDLK 190
>sp|Q4UB16|RAB1_THEAN Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1
Length = 220
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
WDTAGQERFRTITS+YYRGAHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+G
Sbjct: 61 WDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIG 120
Query: 62 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
NK DL ++VV + AK A++ + ++E SAK +NVE+AF +A ++KD++ PS
Sbjct: 121 NKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPS-- 178
Query: 122 NARPPTVQI 130
NA TV +
Sbjct: 179 NAPTSTVNL 187
>sp|O42819|SEC4_CANGA Ras-related protein SEC4 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC4 PE=3
SV=1
Length = 215
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 97/143 (67%), Gaps = 4/143 (2%)
Query: 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW ++ +A+D LLVGN
Sbjct: 74 WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGN 133
Query: 63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ--PSM 120
K D+ +VV+YE +A A E+G+PF+E+SAK+ NV + F +A I++++ S
Sbjct: 134 KSDMDT-RVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKIDSNKLSGP 192
Query: 121 NNARPPTVQIKG-QPVAQKSGCC 142
N+ + + I + + KS CC
Sbjct: 193 NSGKDGNISINANKGDSSKSNCC 215
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.126 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,581,327
Number of Sequences: 539616
Number of extensions: 1608113
Number of successful extensions: 7367
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 5902
Number of HSP's gapped (non-prelim): 1180
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)