Query 032243
Match_columns 144
No_of_seqs 116 out of 1531
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 6.8E-34 1.5E-38 189.7 14.9 143 1-143 61-205 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 8.3E-33 1.8E-37 183.8 12.2 143 1-143 57-200 (200)
3 KOG0078 GTP-binding protein SE 100.0 8.1E-31 1.8E-35 176.9 14.6 116 1-116 64-179 (207)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 4.2E-31 9.2E-36 176.0 12.1 115 1-115 74-189 (221)
5 KOG0088 GTPase Rab21, small G 100.0 1.5E-30 3.3E-35 168.4 11.5 143 1-143 65-217 (218)
6 cd04120 Rab12 Rab12 subfamily. 100.0 7.8E-29 1.7E-33 171.0 16.8 113 1-113 52-165 (202)
7 cd04126 Rab20 Rab20 subfamily. 100.0 9.8E-29 2.1E-33 172.4 14.9 141 1-142 47-220 (220)
8 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.3E-28 2.8E-33 166.0 12.7 113 1-113 66-178 (222)
9 KOG0098 GTPase Rab2, small G p 100.0 2.4E-28 5.2E-33 161.8 12.4 119 1-119 58-176 (216)
10 KOG0079 GTP-binding protein H- 100.0 1.3E-28 2.9E-33 157.7 10.7 139 1-142 60-198 (198)
11 KOG0394 Ras-related GTPase [Ge 100.0 2.5E-28 5.4E-33 161.4 12.1 143 1-144 61-210 (210)
12 cd04121 Rab40 Rab40 subfamily. 100.0 1E-27 2.2E-32 164.0 15.6 111 1-112 58-168 (189)
13 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.1E-27 2.3E-32 165.3 15.5 142 1-142 53-201 (201)
14 KOG0081 GTPase Rab27, small G 100.0 3.6E-28 7.7E-33 157.5 11.4 119 1-119 70-189 (219)
15 cd04144 Ras2 Ras2 subfamily. 100.0 1.6E-27 3.4E-32 163.2 15.2 136 1-142 50-188 (190)
16 KOG0093 GTPase Rab3, small G p 100.0 3E-28 6.4E-33 155.9 10.1 116 1-116 73-188 (193)
17 cd04112 Rab26 Rab26 subfamily. 100.0 5.1E-27 1.1E-31 160.7 15.7 139 1-142 53-191 (191)
18 PTZ00099 rab6; Provisional 100.0 7.5E-27 1.6E-31 158.1 15.5 114 1-114 32-145 (176)
19 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-26 2.8E-31 159.8 16.4 141 1-142 58-199 (199)
20 KOG0080 GTPase Rab18, small G 100.0 1.5E-27 3.3E-32 154.7 10.8 113 2-114 64-177 (209)
21 KOG0091 GTPase Rab39, small G 100.0 1.3E-26 2.8E-31 150.8 14.6 116 1-116 61-178 (213)
22 PLN03110 Rab GTPase; Provision 100.0 2E-26 4.4E-31 160.7 16.8 114 1-114 64-177 (216)
23 KOG0083 GTPase Rab26/Rab37, sm 99.9 3.2E-27 6.8E-32 149.2 8.4 121 1-121 50-170 (192)
24 cd04125 RabA_like RabA-like su 99.9 1.1E-25 2.5E-30 153.6 16.4 135 1-143 52-186 (188)
25 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.6E-25 3.4E-30 157.3 16.0 112 1-113 64-190 (232)
26 KOG0086 GTPase Rab4, small G p 99.9 5.7E-26 1.2E-30 146.5 11.8 119 1-119 61-179 (214)
27 cd01875 RhoG RhoG subfamily. 99.9 1.6E-25 3.6E-30 153.4 14.5 111 1-112 54-178 (191)
28 cd04111 Rab39 Rab39 subfamily. 99.9 7.6E-25 1.7E-29 152.2 17.0 118 1-118 55-173 (211)
29 KOG0097 GTPase Rab14, small G 99.9 2.8E-25 6.1E-30 141.8 12.9 113 1-113 63-175 (215)
30 PTZ00369 Ras-like protein; Pro 99.9 2.8E-25 6.1E-30 151.9 13.7 113 1-113 56-169 (189)
31 cd04109 Rab28 Rab28 subfamily. 99.9 6.8E-25 1.5E-29 152.9 15.9 113 1-113 53-168 (215)
32 cd04122 Rab14 Rab14 subfamily. 99.9 5.9E-25 1.3E-29 147.2 14.5 111 1-111 54-164 (166)
33 cd04133 Rop_like Rop subfamily 99.9 1.7E-25 3.6E-30 151.5 11.8 110 1-111 52-173 (176)
34 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 4E-25 8.6E-30 150.4 12.9 110 1-111 56-180 (182)
35 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 7.1E-25 1.5E-29 147.9 13.9 112 1-112 53-165 (172)
36 cd04127 Rab27A Rab27a subfamil 99.9 2.4E-24 5.1E-29 145.9 14.5 112 1-112 66-178 (180)
37 cd04117 Rab15 Rab15 subfamily. 99.9 1.7E-24 3.6E-29 144.5 13.3 109 1-109 52-160 (161)
38 cd01865 Rab3 Rab3 subfamily. 99.9 3.9E-24 8.4E-29 143.1 14.5 111 1-111 53-163 (165)
39 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.2E-24 4.8E-29 146.8 13.5 121 1-122 52-177 (182)
40 KOG0095 GTPase Rab30, small G 99.9 4.4E-25 9.6E-30 141.9 9.4 119 1-119 59-177 (213)
41 PLN03118 Rab family protein; P 99.9 7.6E-24 1.6E-28 147.1 16.5 115 1-115 65-181 (211)
42 cd04131 Rnd Rnd subfamily. Th 99.9 1.9E-24 4E-29 146.7 12.5 110 1-111 52-176 (178)
43 cd04134 Rho3 Rho3 subfamily. 99.9 2.8E-24 6.1E-29 147.0 13.3 110 1-111 51-174 (189)
44 cd01867 Rab8_Rab10_Rab13_like 99.9 6E-24 1.3E-28 142.5 14.5 112 1-112 55-166 (167)
45 cd04132 Rho4_like Rho4-like su 99.9 6E-24 1.3E-28 144.8 14.6 114 1-115 52-171 (187)
46 cd04118 Rab24 Rab24 subfamily. 99.9 1.3E-23 2.8E-28 143.9 16.1 137 1-142 53-193 (193)
47 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 9.9E-24 2.1E-28 147.4 15.7 114 1-115 52-180 (222)
48 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 6E-24 1.3E-28 142.2 14.1 111 1-111 54-164 (166)
49 PLN03108 Rab family protein; P 99.9 2.2E-23 4.8E-28 144.8 16.9 114 1-114 58-171 (210)
50 smart00176 RAN Ran (Ras-relate 99.9 9.6E-24 2.1E-28 145.5 13.9 110 1-113 47-156 (200)
51 cd04175 Rap1 Rap1 subgroup. T 99.9 8.1E-24 1.8E-28 141.3 13.0 110 1-110 52-162 (164)
52 cd04136 Rap_like Rap-like subf 99.9 7.8E-24 1.7E-28 140.9 12.9 110 1-110 52-162 (163)
53 cd04176 Rap2 Rap2 subgroup. T 99.9 9.5E-24 2.1E-28 140.7 12.2 110 1-110 52-162 (163)
54 cd01866 Rab2 Rab2 subfamily. 99.9 2.8E-23 6E-28 139.4 14.5 112 1-112 56-167 (168)
55 cd01874 Cdc42 Cdc42 subfamily. 99.9 9.7E-24 2.1E-28 142.8 12.3 109 1-110 52-174 (175)
56 cd01873 RhoBTB RhoBTB subfamil 99.9 8.2E-24 1.8E-28 145.4 12.0 106 1-109 69-194 (195)
57 cd01868 Rab11_like Rab11-like. 99.9 4.3E-23 9.3E-28 137.8 14.2 110 1-110 55-164 (165)
58 cd04119 RJL RJL (RabJ-Like) su 99.9 4E-23 8.8E-28 137.8 13.8 111 1-111 52-167 (168)
59 cd01871 Rac1_like Rac1-like su 99.9 2.5E-23 5.5E-28 140.6 12.2 108 1-109 52-173 (174)
60 cd01864 Rab19 Rab19 subfamily. 99.9 5.6E-23 1.2E-27 137.4 13.7 109 1-109 55-164 (165)
61 cd04106 Rab23_lke Rab23-like s 99.9 6.2E-23 1.3E-27 136.5 13.8 108 1-109 54-161 (162)
62 cd04113 Rab4 Rab4 subfamily. 99.9 5.2E-23 1.1E-27 136.9 13.3 109 1-109 52-160 (161)
63 PF00071 Ras: Ras family; Int 99.9 3.8E-23 8.2E-28 137.6 12.4 111 1-111 51-161 (162)
64 cd04140 ARHI_like ARHI subfami 99.9 5.1E-23 1.1E-27 137.7 12.9 109 1-109 52-163 (165)
65 cd04145 M_R_Ras_like M-Ras/R-R 99.9 6.8E-23 1.5E-27 136.5 13.4 110 1-110 53-163 (164)
66 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.1E-22 2.4E-27 135.7 14.2 109 1-110 55-163 (164)
67 smart00173 RAS Ras subfamily o 99.9 1E-22 2.3E-27 135.7 13.3 111 1-111 51-162 (164)
68 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.8E-22 4E-27 135.9 14.2 112 1-112 52-166 (170)
69 PLN03071 GTP-binding nuclear p 99.9 7.6E-23 1.6E-27 143.0 12.6 110 1-113 65-174 (219)
70 smart00175 RAB Rab subfamily o 99.9 2.4E-22 5.3E-27 133.7 14.3 112 1-112 52-163 (164)
71 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.8E-22 3.8E-27 133.9 13.4 109 1-110 52-161 (162)
72 smart00174 RHO Rho (Ras homolo 99.9 8.2E-23 1.8E-27 137.5 11.7 110 1-111 49-172 (174)
73 cd01861 Rab6 Rab6 subfamily. 99.9 2.9E-22 6.3E-27 133.1 13.3 109 1-109 52-160 (161)
74 cd04124 RabL2 RabL2 subfamily. 99.9 3.4E-22 7.5E-27 133.3 13.4 109 1-113 52-160 (161)
75 cd00877 Ran Ran (Ras-related n 99.9 2.9E-22 6.3E-27 134.4 12.8 109 1-112 52-160 (166)
76 cd04116 Rab9 Rab9 subfamily. 99.9 4.3E-22 9.4E-27 133.6 13.4 108 1-109 57-169 (170)
77 cd01860 Rab5_related Rab5-rela 99.9 8.7E-22 1.9E-26 131.1 14.2 110 1-110 53-162 (163)
78 cd04147 Ras_dva Ras-dva subfam 99.9 7.3E-22 1.6E-26 135.9 14.2 142 1-142 50-196 (198)
79 cd04115 Rab33B_Rab33A Rab33B/R 99.9 7.4E-22 1.6E-26 132.7 13.7 110 1-110 54-168 (170)
80 cd04123 Rab21 Rab21 subfamily. 99.9 1.5E-21 3.3E-26 129.4 14.2 110 1-110 52-161 (162)
81 cd04177 RSR1 RSR1 subgroup. R 99.9 1.3E-21 2.8E-26 131.2 13.2 111 1-111 52-164 (168)
82 cd04103 Centaurin_gamma Centau 99.9 6.9E-22 1.5E-26 131.7 11.6 104 1-109 50-157 (158)
83 cd04143 Rhes_like Rhes_like su 99.9 1.5E-21 3.2E-26 138.6 13.7 112 1-112 51-172 (247)
84 cd04146 RERG_RasL11_like RERG/ 99.9 1.1E-21 2.4E-26 131.1 12.1 111 1-111 50-164 (165)
85 PLN00223 ADP-ribosylation fact 99.9 1.2E-21 2.7E-26 133.2 12.2 110 1-112 64-179 (181)
86 cd04149 Arf6 Arf6 subfamily. 99.9 8.6E-22 1.9E-26 132.4 11.1 106 1-108 56-167 (168)
87 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.7E-21 3.6E-26 131.3 12.2 107 1-108 51-171 (173)
88 smart00177 ARF ARF-like small 99.9 7.3E-22 1.6E-26 133.5 8.8 108 1-110 60-173 (175)
89 cd04150 Arf1_5_like Arf1-Arf5- 99.9 8.5E-22 1.8E-26 131.3 8.3 106 1-108 47-158 (159)
90 cd04114 Rab30 Rab30 subfamily. 99.9 1.3E-20 2.9E-25 126.1 14.1 110 1-110 59-168 (169)
91 cd04139 RalA_RalB RalA/RalB su 99.9 1.6E-20 3.5E-25 124.8 14.2 111 1-111 51-162 (164)
92 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 7.7E-22 1.7E-26 132.1 7.6 107 1-108 47-163 (164)
93 cd01862 Rab7 Rab7 subfamily. 99.9 1.9E-20 4.1E-25 125.5 14.4 113 1-113 52-169 (172)
94 cd04158 ARD1 ARD1 subfamily. 99.9 5.3E-21 1.2E-25 128.5 11.7 110 1-112 46-162 (169)
95 cd04148 RGK RGK subfamily. Th 99.9 1.5E-20 3.3E-25 131.5 14.1 114 1-116 53-168 (221)
96 cd04142 RRP22 RRP22 subfamily. 99.9 7.6E-21 1.6E-25 131.0 12.3 112 1-112 52-175 (198)
97 KOG0393 Ras-related small GTPa 99.9 3.4E-21 7.3E-26 130.6 10.2 112 1-113 56-181 (198)
98 cd01863 Rab18 Rab18 subfamily. 99.9 1.6E-20 3.4E-25 124.8 13.3 108 1-109 52-160 (161)
99 cd04135 Tc10 TC10 subfamily. 99.9 7.9E-21 1.7E-25 127.9 11.8 109 1-110 51-173 (174)
100 KOG0395 Ras-related GTPase [Ge 99.9 2.9E-20 6.3E-25 127.6 14.6 115 1-115 54-169 (196)
101 cd04137 RheB Rheb (Ras Homolog 99.9 5.9E-20 1.3E-24 124.3 15.2 112 1-112 52-164 (180)
102 cd00154 Rab Rab family. Rab G 99.9 3E-20 6.6E-25 122.3 13.2 107 1-107 52-158 (159)
103 cd01892 Miro2 Miro2 subfamily. 99.9 5.8E-21 1.3E-25 128.4 9.8 109 1-111 57-166 (169)
104 cd00876 Ras Ras family. The R 99.8 4.8E-20 1E-24 122.0 13.3 109 1-109 50-159 (160)
105 cd04154 Arl2 Arl2 subfamily. 99.8 2E-20 4.4E-25 126.0 11.5 106 1-108 61-172 (173)
106 PTZ00133 ADP-ribosylation fact 99.8 3.6E-20 7.8E-25 126.0 12.8 111 1-113 64-180 (182)
107 cd04129 Rho2 Rho2 subfamily. 99.8 3.3E-20 7.2E-25 126.6 12.6 111 1-112 52-174 (187)
108 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 3.7E-20 8E-25 126.0 12.6 110 1-112 55-171 (183)
109 cd01870 RhoA_like RhoA-like su 99.8 8.6E-20 1.9E-24 122.9 12.7 109 1-110 52-174 (175)
110 cd04157 Arl6 Arl6 subfamily. 99.8 5.7E-20 1.2E-24 122.1 11.4 106 1-108 48-161 (162)
111 cd04161 Arl2l1_Arl13_like Arl2 99.8 3.3E-20 7.1E-25 124.5 9.3 106 1-108 46-166 (167)
112 KOG4252 GTP-binding protein [S 99.8 3.5E-20 7.6E-25 122.6 8.8 115 1-116 72-186 (246)
113 cd04151 Arl1 Arl1 subfamily. 99.8 3.5E-20 7.6E-25 123.1 8.8 106 1-108 46-157 (158)
114 cd01893 Miro1 Miro1 subfamily. 99.8 1.8E-19 3.9E-24 120.7 11.9 111 1-112 50-165 (166)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.1E-19 4.5E-24 121.4 11.5 106 1-108 62-173 (174)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1E-19 2.3E-24 120.8 9.3 106 1-108 47-159 (160)
117 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3E-19 6.6E-24 119.3 11.3 106 1-108 53-166 (167)
118 cd00157 Rho Rho (Ras homology) 99.8 3.2E-19 7E-24 119.4 10.9 107 1-108 51-170 (171)
119 cd00879 Sar1 Sar1 subfamily. 99.8 6.7E-19 1.5E-23 120.2 11.4 107 1-109 66-189 (190)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.8 6.5E-19 1.4E-23 116.8 9.6 106 1-108 46-157 (158)
121 KOG0070 GTP-binding ADP-ribosy 99.8 3.5E-19 7.6E-24 118.3 8.2 110 1-112 64-179 (181)
122 cd01890 LepA LepA subfamily. 99.8 1.6E-18 3.5E-23 117.0 11.6 104 1-110 70-176 (179)
123 KOG0073 GTP-binding ADP-ribosy 99.8 2.5E-18 5.4E-23 112.1 11.7 111 1-113 63-180 (185)
124 PF00025 Arf: ADP-ribosylation 99.8 3E-18 6.6E-23 115.9 12.2 108 1-110 61-175 (175)
125 cd04102 RabL3 RabL3 (Rab-like3 99.8 1.9E-18 4.2E-23 119.2 11.0 97 1-97 57-176 (202)
126 smart00178 SAR Sar1p-like memb 99.8 2.6E-18 5.7E-23 117.0 11.4 107 1-109 64-183 (184)
127 PTZ00132 GTP-binding nuclear p 99.8 1.1E-17 2.3E-22 116.6 13.4 110 1-113 61-170 (215)
128 PRK12299 obgE GTPase CgtA; Rev 99.8 2.1E-17 4.6E-22 121.8 12.2 112 1-112 209-329 (335)
129 KOG1673 Ras GTPases [General f 99.7 4.4E-17 9.6E-22 105.6 10.0 125 2-127 73-202 (205)
130 cd04159 Arl10_like Arl10-like 99.7 2.5E-17 5.4E-22 108.4 9.2 106 1-108 47-158 (159)
131 cd01898 Obg Obg subfamily. Th 99.7 3E-17 6.6E-22 109.8 9.5 108 1-109 51-169 (170)
132 KOG0071 GTP-binding ADP-ribosy 99.7 2.9E-17 6.2E-22 104.8 8.4 109 1-111 64-178 (180)
133 PLN00023 GTP-binding protein; 99.7 4.8E-17 1E-21 118.4 10.2 86 1-86 86-189 (334)
134 cd01897 NOG NOG1 is a nucleola 99.7 7.7E-17 1.7E-21 107.7 9.8 107 1-110 50-167 (168)
135 cd04171 SelB SelB subfamily. 99.7 1.5E-16 3.2E-21 105.7 11.1 102 1-108 54-163 (164)
136 KOG0075 GTP-binding ADP-ribosy 99.7 2.8E-17 6.1E-22 105.6 6.9 105 2-111 69-182 (186)
137 TIGR02528 EutP ethanolamine ut 99.7 9.2E-17 2E-21 104.8 9.3 98 1-107 38-141 (142)
138 cd04155 Arl3 Arl3 subfamily. 99.7 5.7E-16 1.2E-20 104.0 12.5 103 1-108 61-172 (173)
139 KOG4423 GTP-binding protein-li 99.7 8.8E-17 1.9E-21 107.1 7.2 114 1-114 78-197 (229)
140 KOG0072 GTP-binding ADP-ribosy 99.7 8.6E-17 1.9E-21 103.0 6.6 110 1-112 65-180 (182)
141 cd01879 FeoB Ferrous iron tran 99.7 6.3E-16 1.4E-20 102.1 10.7 103 1-110 46-156 (158)
142 TIGR02729 Obg_CgtA Obg family 99.7 7.5E-16 1.6E-20 113.4 11.4 109 1-110 208-328 (329)
143 KOG0076 GTP-binding ADP-ribosy 99.7 2.9E-16 6.3E-21 103.5 7.9 113 1-113 72-189 (197)
144 cd01878 HflX HflX subfamily. 99.7 7.8E-16 1.7E-20 106.3 10.0 103 1-109 92-203 (204)
145 cd00882 Ras_like_GTPase Ras-li 99.7 3.9E-15 8.6E-20 96.4 12.6 107 1-107 48-156 (157)
146 cd01888 eIF2_gamma eIF2-gamma 99.7 9.8E-16 2.1E-20 105.9 10.1 108 1-110 86-198 (203)
147 PRK15467 ethanolamine utilizat 99.6 2.8E-15 6E-20 99.9 10.8 102 2-112 41-148 (158)
148 KOG3883 Ras family small GTPas 99.6 4.2E-15 9.1E-20 96.3 10.8 112 1-112 63-176 (198)
149 cd01881 Obg_like The Obg-like 99.6 1.5E-15 3.2E-20 102.0 8.7 109 1-109 47-175 (176)
150 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 4.8E-15 1E-19 98.9 10.6 107 1-111 53-166 (168)
151 TIGR01393 lepA GTP-binding pro 99.6 4E-15 8.7E-20 117.0 11.5 105 1-111 73-180 (595)
152 COG1100 GTPase SAR1 and relate 99.6 1.5E-14 3.1E-19 100.7 13.0 114 1-114 57-188 (219)
153 cd01891 TypA_BipA TypA (tyrosi 99.6 3.8E-15 8.2E-20 102.2 9.7 98 1-102 68-173 (194)
154 COG2229 Predicted GTPase [Gene 99.6 1.1E-14 2.4E-19 97.0 11.4 103 2-109 72-176 (187)
155 PRK04213 GTP-binding protein; 99.6 1.3E-15 2.7E-20 105.0 6.4 104 1-111 55-192 (201)
156 TIGR03156 GTP_HflX GTP-binding 99.6 2.5E-14 5.5E-19 106.2 11.8 102 1-109 240-350 (351)
157 TIGR00157 ribosome small subun 99.6 7E-15 1.5E-19 104.4 8.4 96 9-108 24-120 (245)
158 TIGR00231 small_GTP small GTP- 99.6 2.5E-14 5.3E-19 93.6 10.1 106 1-107 53-160 (161)
159 PRK03003 GTP-binding protein D 99.6 5.8E-15 1.2E-19 113.7 8.0 114 1-118 262-389 (472)
160 cd00881 GTP_translation_factor 99.6 4.7E-14 1E-18 95.6 11.3 106 1-110 65-186 (189)
161 PRK12297 obgE GTPase CgtA; Rev 99.6 5.9E-14 1.3E-18 106.2 12.8 109 1-113 209-329 (424)
162 KOG0074 GTP-binding ADP-ribosy 99.6 2.5E-15 5.4E-20 96.2 4.3 108 1-109 65-177 (185)
163 PRK05433 GTP-binding protein L 99.6 3.7E-14 8.1E-19 111.6 11.8 105 1-111 77-184 (600)
164 cd01889 SelB_euk SelB subfamil 99.6 6.4E-14 1.4E-18 95.9 10.7 107 1-111 71-186 (192)
165 cd01894 EngA1 EngA1 subfamily. 99.6 3.7E-14 8.1E-19 93.3 9.2 99 2-109 49-156 (157)
166 PRK12296 obgE GTPase CgtA; Rev 99.6 9.3E-14 2E-18 106.6 12.4 114 1-115 209-344 (500)
167 TIGR00436 era GTP-binding prot 99.6 9.1E-14 2E-18 100.0 11.5 105 1-111 51-164 (270)
168 PRK15494 era GTPase Era; Provi 99.5 8.8E-14 1.9E-18 103.0 10.9 103 1-111 103-216 (339)
169 TIGR03594 GTPase_EngA ribosome 99.5 3.6E-14 7.8E-19 108.0 8.5 109 1-114 223-347 (429)
170 TIGR00475 selB selenocysteine- 99.5 1.4E-13 3.1E-18 108.1 11.1 105 1-112 53-167 (581)
171 TIGR00487 IF-2 translation ini 99.5 1.3E-13 2.9E-18 108.2 10.5 101 1-108 138-247 (587)
172 PRK05291 trmE tRNA modificatio 99.5 6.6E-14 1.4E-18 107.1 8.4 98 1-112 266-371 (449)
173 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.2E-13 2.7E-18 90.7 8.6 97 1-110 52-156 (157)
174 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.5E-13 3.2E-18 104.9 10.1 102 1-114 254-363 (442)
175 TIGR00437 feoB ferrous iron tr 99.5 1E-13 2.3E-18 109.0 9.2 103 1-110 44-154 (591)
176 PRK03003 GTP-binding protein D 99.5 1.5E-13 3.2E-18 105.9 9.8 103 1-112 89-200 (472)
177 PF00009 GTP_EFTU: Elongation 99.5 3.6E-13 7.8E-18 92.0 10.3 105 1-111 73-187 (188)
178 CHL00189 infB translation init 99.5 3E-13 6.5E-18 108.0 11.1 100 1-110 298-409 (742)
179 TIGR03680 eif2g_arch translati 99.5 2E-13 4.3E-18 103.4 9.5 108 1-110 83-195 (406)
180 TIGR00491 aIF-2 translation in 99.5 4.9E-13 1.1E-17 104.9 11.9 103 2-111 73-216 (590)
181 PRK11058 GTPase HflX; Provisio 99.5 5E-13 1.1E-17 101.5 11.6 107 1-112 248-363 (426)
182 PRK12298 obgE GTPase CgtA; Rev 99.5 8.9E-13 1.9E-17 99.2 12.5 111 1-112 210-334 (390)
183 TIGR00483 EF-1_alpha translati 99.5 2.5E-13 5.4E-18 103.5 8.4 101 1-103 88-199 (426)
184 PRK04000 translation initiatio 99.5 5.2E-13 1.1E-17 101.2 9.8 108 1-111 88-201 (411)
185 PRK05306 infB translation init 99.5 4.6E-13 1E-17 107.7 10.0 99 1-109 340-450 (787)
186 cd00880 Era_like Era (E. coli 99.4 5.6E-13 1.2E-17 87.2 8.3 105 1-109 48-162 (163)
187 PRK10512 selenocysteinyl-tRNA- 99.4 1.8E-12 3.9E-17 102.4 11.2 103 1-110 54-165 (614)
188 PF08477 Miro: Miro-like prote 99.4 3.5E-13 7.7E-18 85.2 5.5 64 1-65 53-119 (119)
189 PRK00454 engB GTP-binding prot 99.4 3.5E-12 7.7E-17 87.2 10.4 107 1-111 73-194 (196)
190 cd01895 EngA2 EngA2 subfamily. 99.4 6.5E-12 1.4E-16 83.7 11.1 105 1-109 53-173 (174)
191 PRK00089 era GTPase Era; Revie 99.4 3.9E-12 8.5E-17 92.4 10.8 106 2-111 57-171 (292)
192 TIGR01394 TypA_BipA GTP-bindin 99.4 2.5E-12 5.3E-17 101.3 9.9 107 1-111 67-191 (594)
193 PRK00093 GTP-binding protein D 99.4 4E-12 8.7E-17 97.1 10.7 98 1-109 52-160 (435)
194 PRK09518 bifunctional cytidyla 99.4 3.1E-12 6.7E-17 102.9 10.4 110 1-116 501-626 (712)
195 cd04163 Era Era subfamily. Er 99.4 5.5E-12 1.2E-16 83.3 10.0 104 2-109 55-167 (168)
196 TIGR03594 GTPase_EngA ribosome 99.4 9E-12 2E-16 94.9 11.1 102 1-111 50-160 (429)
197 PF02421 FeoB_N: Ferrous iron 99.4 1.2E-12 2.6E-17 86.7 5.3 99 1-106 50-156 (156)
198 PRK04004 translation initiatio 99.4 1.7E-11 3.7E-16 96.5 12.4 102 2-110 75-217 (586)
199 cd04166 CysN_ATPS CysN_ATPS su 99.3 8.1E-12 1.8E-16 86.7 9.1 99 1-102 80-185 (208)
200 PRK00093 GTP-binding protein D 99.3 7E-12 1.5E-16 95.7 9.5 109 1-114 224-347 (435)
201 KOG0096 GTPase Ran/TC4/GSP1 (n 99.3 6.3E-13 1.4E-17 89.0 3.2 108 2-112 63-170 (216)
202 PRK12317 elongation factor 1-a 99.3 3.4E-12 7.3E-17 97.3 7.3 102 1-104 87-198 (425)
203 PRK14845 translation initiatio 99.3 3.6E-11 7.8E-16 99.1 13.5 104 1-111 529-673 (1049)
204 PRK09518 bifunctional cytidyla 99.3 1.3E-11 2.8E-16 99.4 10.6 102 1-112 326-437 (712)
205 cd04105 SR_beta Signal recogni 99.3 1.4E-11 3E-16 85.2 8.9 69 1-69 51-124 (203)
206 cd01883 EF1_alpha Eukaryotic e 99.3 5.3E-12 1.2E-16 88.3 6.7 98 1-100 80-194 (219)
207 cd04165 GTPBP1_like GTPBP1-lik 99.3 4.8E-11 1E-15 83.7 11.4 103 2-108 88-220 (224)
208 PRK10218 GTP-binding protein; 99.3 2.5E-11 5.4E-16 95.7 10.4 107 1-111 71-195 (607)
209 TIGR03598 GTPase_YsxC ribosome 99.3 1.5E-11 3.2E-16 83.3 8.0 96 1-100 67-179 (179)
210 PF10662 PduV-EutP: Ethanolami 99.3 4.1E-11 9E-16 77.9 8.8 99 1-107 39-142 (143)
211 cd01859 MJ1464 MJ1464. This f 99.3 4.4E-11 9.5E-16 79.3 9.0 95 11-111 2-96 (156)
212 cd00066 G-alpha G protein alph 99.3 5.5E-11 1.2E-15 87.5 10.2 114 1-114 164-314 (317)
213 COG0532 InfB Translation initi 99.3 1.2E-10 2.7E-15 88.8 11.9 102 2-113 59-172 (509)
214 cd01855 YqeH YqeH. YqeH is an 99.3 7.5E-11 1.6E-15 80.7 9.8 94 11-111 24-125 (190)
215 PRK09554 feoB ferrous iron tra 99.3 6.7E-11 1.5E-15 95.6 10.9 103 1-110 53-167 (772)
216 PTZ00327 eukaryotic translatio 99.2 9.4E-11 2E-15 89.9 10.8 107 2-110 121-232 (460)
217 cd04168 TetM_like Tet(M)-like 99.2 1.2E-10 2.5E-15 82.5 10.1 63 1-67 67-129 (237)
218 PRK12289 GTPase RsgA; Reviewed 99.2 7.4E-11 1.6E-15 87.7 9.0 95 10-109 78-173 (352)
219 COG1159 Era GTPase [General fu 99.2 2E-10 4.4E-15 82.3 10.5 107 2-112 58-173 (298)
220 smart00275 G_alpha G protein a 99.2 2.3E-10 5.1E-15 84.9 10.9 114 1-114 187-337 (342)
221 cd01885 EF2 EF2 (for archaea a 99.2 1.2E-10 2.5E-15 81.6 8.8 63 1-67 76-138 (222)
222 KOG0462 Elongation factor-type 99.2 1.2E-10 2.7E-15 89.0 9.4 104 1-111 128-235 (650)
223 PRK13768 GTPase; Provisional 99.2 1.8E-10 3.8E-15 82.3 9.7 107 2-111 101-247 (253)
224 cd01896 DRG The developmentall 99.2 3.3E-10 7.1E-15 80.0 10.8 50 54-110 176-225 (233)
225 cd01876 YihA_EngB The YihA (En 99.2 2.3E-10 4.9E-15 75.7 9.5 103 1-109 48-169 (170)
226 PRK09866 hypothetical protein; 99.2 6.8E-10 1.5E-14 87.1 12.0 106 2-109 234-351 (741)
227 cd01884 EF_Tu EF-Tu subfamily. 99.2 7.5E-10 1.6E-14 76.2 11.0 94 2-99 69-171 (195)
228 PRK00098 GTPase RsgA; Reviewed 99.2 1E-10 2.3E-15 85.3 7.1 85 20-108 79-164 (298)
229 cd01854 YjeQ_engC YjeQ/EngC. 99.2 1.5E-10 3.3E-15 84.0 7.9 85 19-108 76-161 (287)
230 PRK12736 elongation factor Tu; 99.2 5.3E-10 1.2E-14 84.5 11.1 105 2-110 79-200 (394)
231 cd04167 Snu114p Snu114p subfam 99.2 1.6E-10 3.6E-15 80.4 7.4 63 1-67 74-136 (213)
232 TIGR00485 EF-Tu translation el 99.1 4.6E-10 9.9E-15 84.9 10.0 93 1-97 78-179 (394)
233 KOG1489 Predicted GTP-binding 99.1 6.6E-10 1.4E-14 80.2 9.2 87 19-108 272-364 (366)
234 COG1160 Predicted GTPases [Gen 99.1 1.7E-09 3.6E-14 81.5 10.9 102 1-111 54-165 (444)
235 PRK12288 GTPase RsgA; Reviewed 99.1 1E-09 2.2E-14 81.5 9.7 88 19-109 118-206 (347)
236 PLN00043 elongation factor 1-a 99.1 5.9E-10 1.3E-14 85.4 8.2 97 1-101 88-203 (447)
237 PRK05124 cysN sulfate adenylyl 99.1 8.7E-10 1.9E-14 85.1 8.8 100 1-103 110-217 (474)
238 TIGR03597 GTPase_YqeH ribosome 99.1 1.6E-09 3.6E-14 81.0 9.9 95 8-109 50-151 (360)
239 KOG1145 Mitochondrial translat 99.0 3.9E-09 8.4E-14 81.1 11.3 103 2-111 205-316 (683)
240 COG0481 LepA Membrane GTPase L 99.0 1.3E-09 2.8E-14 82.5 8.4 105 1-111 79-186 (603)
241 TIGR02034 CysN sulfate adenyly 99.0 2E-09 4.4E-14 81.7 9.0 99 1-102 83-188 (406)
242 COG2262 HflX GTPases [General 99.0 9.3E-09 2E-13 76.6 12.1 98 10-113 261-358 (411)
243 PRK00741 prfC peptide chain re 99.0 4.8E-09 1E-13 81.9 11.2 63 1-67 82-144 (526)
244 PRK12735 elongation factor Tu; 99.0 3E-09 6.6E-14 80.5 9.8 104 2-109 79-201 (396)
245 PRK13351 elongation factor G; 99.0 4.7E-09 1E-13 84.5 11.3 64 1-68 76-139 (687)
246 cd04169 RF3 RF3 subfamily. Pe 99.0 4.6E-09 1E-13 75.6 10.0 64 1-68 74-137 (267)
247 COG0536 Obg Predicted GTPase [ 99.0 7E-09 1.5E-13 75.7 9.4 96 19-114 235-336 (369)
248 COG1160 Predicted GTPases [Gen 99.0 5.3E-09 1.2E-13 78.8 8.9 113 2-118 230-358 (444)
249 cd01858 NGP_1 NGP-1. Autoanti 98.9 5.1E-09 1.1E-13 69.5 7.8 89 18-111 5-95 (157)
250 KOG1707 Predicted Ras related/ 98.9 2.3E-09 5.1E-14 82.6 6.5 120 2-121 60-185 (625)
251 COG0486 ThdF Predicted GTPase 98.9 6.5E-09 1.4E-13 78.6 8.5 103 1-113 268-378 (454)
252 KOG0082 G-protein alpha subuni 98.9 1.5E-08 3.3E-13 74.8 10.2 114 1-114 198-347 (354)
253 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 5.2E-09 1.1E-13 73.6 7.0 109 1-111 51-176 (232)
254 PRK12740 elongation factor G; 98.9 1.8E-08 3.8E-13 81.0 10.7 63 1-67 63-125 (668)
255 PRK00049 elongation factor Tu; 98.9 2.4E-08 5.2E-13 75.6 10.4 92 2-97 79-179 (396)
256 PRK05506 bifunctional sulfate 98.9 1.3E-08 2.8E-13 81.3 9.3 98 1-101 107-211 (632)
257 CHL00071 tufA elongation facto 98.9 2.2E-08 4.7E-13 76.2 9.9 94 2-99 79-181 (409)
258 PTZ00141 elongation factor 1- 98.9 1.7E-08 3.6E-13 77.5 9.1 98 1-101 88-203 (446)
259 KOG1423 Ras-like GTPase ERA [C 98.9 2.4E-08 5.3E-13 72.0 8.8 106 2-111 124-271 (379)
260 cd01849 YlqF_related_GTPase Yl 98.8 2.6E-08 5.6E-13 66.0 8.2 84 23-110 1-84 (155)
261 cd01899 Ygr210 Ygr210 subfamil 98.8 2.2E-08 4.7E-13 73.7 8.4 54 54-111 214-269 (318)
262 KOG0077 Vesicle coat complex C 98.8 1.6E-08 3.5E-13 66.8 6.8 106 2-109 68-191 (193)
263 cd01886 EF-G Elongation factor 98.8 3.5E-08 7.5E-13 71.2 9.1 64 1-68 67-130 (270)
264 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 2.4E-08 5.3E-13 65.2 7.5 76 17-98 7-84 (141)
265 PF09439 SRPRB: Signal recogni 98.8 1.8E-08 3.9E-13 68.2 7.1 70 1-70 52-128 (181)
266 cd01856 YlqF YlqF. Proteins o 98.8 3.6E-08 7.8E-13 66.4 8.1 95 9-111 7-101 (171)
267 PLN03126 Elongation factor Tu; 98.8 8.1E-08 1.7E-12 74.3 11.0 93 2-98 148-249 (478)
268 TIGR03596 GTPase_YlqF ribosome 98.8 6E-08 1.3E-12 70.2 9.6 100 6-113 5-105 (276)
269 cd04170 EF-G_bact Elongation f 98.8 9.2E-08 2E-12 68.8 10.2 93 1-99 67-161 (268)
270 cd04104 p47_IIGP_like p47 (47- 98.8 1.2E-07 2.5E-12 65.3 10.1 106 1-113 55-186 (197)
271 COG0218 Predicted GTPase [Gene 98.8 1.4E-07 3E-12 64.4 10.1 105 2-111 74-197 (200)
272 PF03029 ATP_bind_1: Conserved 98.8 6.3E-08 1.4E-12 68.6 8.6 107 2-110 95-236 (238)
273 PLN03127 Elongation factor Tu; 98.8 7.5E-08 1.6E-12 74.0 9.6 105 2-110 128-251 (447)
274 KOG0090 Signal recognition par 98.7 2.4E-07 5.2E-12 63.7 10.3 107 2-109 86-237 (238)
275 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.5E-07 3.3E-12 68.4 9.2 100 6-113 8-108 (287)
276 COG1084 Predicted GTPase [Gene 98.7 2.1E-07 4.6E-12 67.7 9.7 108 1-112 218-337 (346)
277 PRK12739 elongation factor G; 98.7 2.6E-07 5.6E-12 74.6 11.1 64 1-68 76-139 (691)
278 TIGR00484 EF-G translation elo 98.7 1E-07 2.2E-12 76.9 8.7 90 1-96 78-171 (689)
279 COG0370 FeoB Fe2+ transport sy 98.7 9.1E-08 2E-12 75.4 7.8 105 1-112 53-165 (653)
280 TIGR00503 prfC peptide chain r 98.7 1.2E-07 2.6E-12 74.1 8.3 64 1-68 83-146 (527)
281 PRK01889 GTPase RsgA; Reviewed 98.7 1.8E-07 3.8E-12 70.0 8.5 83 19-107 110-193 (356)
282 COG4917 EutP Ethanolamine util 98.7 1.8E-07 3.9E-12 59.2 7.1 99 2-109 41-144 (148)
283 PRK13796 GTPase YqeH; Provisio 98.6 4.7E-07 1E-11 68.0 10.6 94 9-109 57-157 (365)
284 KOG1144 Translation initiation 98.6 2.3E-07 5E-12 73.8 9.0 106 2-114 544-690 (1064)
285 COG1162 Predicted GTPases [Gen 98.6 2.9E-07 6.2E-12 66.7 8.5 97 10-109 68-165 (301)
286 PF00503 G-alpha: G-protein al 98.6 2.8E-07 6.1E-12 69.7 8.7 110 1-110 239-389 (389)
287 COG1217 TypA Predicted membran 98.6 2.6E-07 5.6E-12 70.2 7.8 108 1-112 71-196 (603)
288 COG2895 CysN GTPases - Sulfate 98.6 3.8E-07 8.3E-12 67.1 8.0 94 2-100 90-192 (431)
289 COG3276 SelB Selenocysteine-sp 98.6 1.3E-06 2.8E-11 65.9 10.6 106 2-111 54-162 (447)
290 COG5257 GCD11 Translation init 98.5 3.4E-07 7.3E-12 66.7 7.1 105 2-111 90-202 (415)
291 TIGR00101 ureG urease accessor 98.5 1E-06 2.2E-11 60.9 7.5 80 22-111 113-196 (199)
292 COG5256 TEF1 Translation elong 98.5 8E-07 1.7E-11 66.6 7.2 101 2-102 89-202 (428)
293 PRK09435 membrane ATPase/prote 98.4 5.7E-06 1.2E-10 61.3 10.8 100 2-112 153-261 (332)
294 COG1163 DRG Predicted GTPase [ 98.3 4.1E-06 9E-11 61.1 8.5 51 54-111 239-289 (365)
295 PRK09602 translation-associate 98.3 8.5E-06 1.8E-10 61.8 9.8 53 54-110 217-270 (396)
296 TIGR00073 hypB hydrogenase acc 98.3 8.5E-06 1.8E-10 56.5 8.7 56 55-110 149-206 (207)
297 KOG1490 GTP-binding protein CR 98.3 8.4E-06 1.8E-10 62.7 8.9 110 1-111 218-341 (620)
298 PRK00007 elongation factor G; 98.2 8.4E-06 1.8E-10 66.0 9.2 90 1-96 78-171 (693)
299 KOG0099 G protein subunit Galp 98.2 1E-05 2.3E-10 57.6 7.8 118 1-118 205-376 (379)
300 TIGR00490 aEF-2 translation el 98.2 2.7E-06 5.9E-11 69.1 5.0 63 1-67 89-151 (720)
301 TIGR00750 lao LAO/AO transport 98.2 1.2E-05 2.6E-10 58.9 7.9 99 2-111 131-238 (300)
302 cd01850 CDC_Septin CDC/Septin. 98.2 6.1E-06 1.3E-10 59.8 6.2 70 21-95 114-186 (276)
303 KOG3886 GTP-binding protein [S 98.1 3.1E-05 6.6E-10 54.3 8.4 67 1-68 56-130 (295)
304 cd01852 AIG1 AIG1 (avrRpt2-ind 98.1 7.3E-05 1.6E-09 51.3 10.4 109 2-112 53-185 (196)
305 COG3596 Predicted GTPase [Gene 98.1 2.9E-05 6.2E-10 55.7 7.9 109 1-111 90-222 (296)
306 KOG1532 GTPase XAB1, interacts 98.1 8.9E-05 1.9E-09 53.3 10.3 109 2-112 120-265 (366)
307 KOG1707 Predicted Ras related/ 98.0 3.6E-05 7.8E-10 60.1 7.9 92 20-114 494-586 (625)
308 smart00010 small_GTPase Small 98.0 3.5E-05 7.7E-10 48.4 6.5 76 15-100 40-115 (124)
309 COG5258 GTPBP1 GTPase [General 97.9 0.00017 3.7E-09 54.1 9.6 103 2-108 205-336 (527)
310 KOG1191 Mitochondrial GTPase [ 97.9 2.7E-05 5.8E-10 59.7 5.5 111 2-113 320-452 (531)
311 KOG0461 Selenocysteine-specifi 97.9 0.00011 2.4E-09 54.5 8.5 105 2-111 74-193 (522)
312 PLN00116 translation elongatio 97.9 3.1E-05 6.7E-10 64.1 6.2 63 1-67 101-163 (843)
313 PTZ00416 elongation factor 2; 97.9 2.8E-05 6.1E-10 64.2 5.7 62 2-67 96-157 (836)
314 PF01926 MMR_HSR1: 50S ribosom 97.9 0.0001 2.3E-09 46.1 7.1 56 2-63 51-116 (116)
315 cd01882 BMS1 Bms1. Bms1 is an 97.8 0.00017 3.7E-09 50.7 8.4 89 2-97 87-182 (225)
316 PRK07560 elongation factor EF- 97.8 3.7E-05 8.1E-10 62.7 5.1 62 2-67 91-152 (731)
317 smart00053 DYNc Dynamin, GTPas 97.8 0.00012 2.7E-09 51.9 7.1 90 2-98 129-236 (240)
318 KOG0458 Elongation factor 1 al 97.8 3.1E-05 6.7E-10 60.4 3.8 99 2-102 259-373 (603)
319 KOG0466 Translation initiation 97.7 3.7E-05 8E-10 56.0 3.8 105 2-111 129-241 (466)
320 COG0050 TufB GTPases - transla 97.7 0.00011 2.4E-09 53.3 6.0 90 2-95 79-177 (394)
321 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00021 4.6E-09 39.1 5.8 45 20-65 12-58 (58)
322 KOG1424 Predicted GTP-binding 97.7 0.00014 3.1E-09 56.1 6.5 80 9-95 163-244 (562)
323 PF00350 Dynamin_N: Dynamin fa 97.7 0.0001 2.2E-09 49.0 5.2 60 2-64 105-168 (168)
324 COG0378 HypB Ni2+-binding GTPa 97.6 0.00015 3.2E-09 49.6 5.3 53 58-110 146-200 (202)
325 KOG0085 G protein subunit Galp 97.6 6.8E-05 1.5E-09 52.7 3.8 114 2-115 203-353 (359)
326 PRK10463 hydrogenase nickel in 97.6 0.00021 4.4E-09 52.1 5.7 54 55-108 231-286 (290)
327 COG4108 PrfC Peptide chain rel 97.6 0.0003 6.5E-09 53.6 6.7 80 1-86 84-163 (528)
328 KOG0468 U5 snRNP-specific prot 97.5 0.00011 2.4E-09 58.5 4.2 62 1-66 200-261 (971)
329 COG0480 FusA Translation elong 97.5 0.00037 8E-09 56.4 6.9 63 1-67 79-141 (697)
330 cd03110 Fer4_NifH_child This p 97.4 0.0028 6E-08 42.7 9.2 80 2-90 97-176 (179)
331 cd04178 Nucleostemin_like Nucl 97.4 0.00051 1.1E-08 46.4 5.5 44 23-68 1-44 (172)
332 KOG3905 Dynein light intermedi 97.3 0.01 2.2E-07 44.0 12.0 59 55-113 223-292 (473)
333 KOG1143 Predicted translation 97.3 0.0012 2.6E-08 49.7 7.0 100 2-105 253-382 (591)
334 PTZ00258 GTP-binding protein; 97.2 0.0039 8.4E-08 47.4 8.9 43 54-97 220-266 (390)
335 KOG0460 Mitochondrial translat 97.2 0.002 4.4E-08 47.8 7.1 89 3-94 122-218 (449)
336 TIGR00991 3a0901s02IAP34 GTP-b 97.1 0.0025 5.5E-08 46.9 7.2 72 1-73 89-172 (313)
337 PF11111 CENP-M: Centromere pr 97.1 0.0096 2.1E-07 40.1 9.0 91 21-112 64-154 (176)
338 PF05783 DLIC: Dynein light in 97.1 0.0078 1.7E-07 46.9 9.8 59 55-113 197-266 (472)
339 KOG0705 GTPase-activating prot 97.1 0.0026 5.7E-08 49.9 7.0 99 15-113 89-191 (749)
340 COG1161 Predicted GTPases [Gen 97.1 0.0022 4.7E-08 47.6 6.5 95 6-107 18-113 (322)
341 KOG1954 Endocytosis/signaling 97.0 0.00077 1.7E-08 50.5 3.3 65 2-69 151-226 (532)
342 KOG0465 Mitochondrial elongati 97.0 0.002 4.3E-08 51.0 5.6 63 1-67 107-169 (721)
343 KOG3887 Predicted small GTPase 97.0 0.0058 1.2E-07 43.5 7.4 109 1-111 78-202 (347)
344 TIGR02836 spore_IV_A stage IV 96.9 0.026 5.6E-07 43.4 10.8 89 16-109 138-235 (492)
345 KOG0410 Predicted GTP binding 96.9 0.0013 2.8E-08 48.5 3.7 92 10-112 247-342 (410)
346 COG1703 ArgK Putative periplas 96.8 0.02 4.3E-07 41.9 8.9 90 19-117 162-260 (323)
347 PF04548 AIG1: AIG1 family; I 96.6 0.019 4.1E-07 40.0 8.0 92 19-112 81-187 (212)
348 KOG2484 GTPase [General functi 96.5 0.01 2.2E-07 44.9 6.0 57 9-69 134-192 (435)
349 PF05049 IIGP: Interferon-indu 96.4 0.024 5.1E-07 42.9 7.9 105 2-112 90-219 (376)
350 KOG2423 Nucleolar GTPase [Gene 96.3 0.036 7.9E-07 42.2 8.0 92 17-111 209-300 (572)
351 KOG0448 Mitofusin 1 GTPase, in 96.2 0.047 1E-06 44.1 8.7 89 2-94 210-309 (749)
352 cd01853 Toc34_like Toc34-like 96.2 0.018 3.8E-07 41.3 6.0 69 1-70 82-165 (249)
353 PF03308 ArgK: ArgK protein; 96.1 0.01 2.3E-07 42.5 4.4 85 19-112 140-231 (266)
354 COG3640 CooC CO dehydrogenase 96.0 0.069 1.5E-06 37.9 8.0 59 2-66 138-197 (255)
355 PRK09601 GTP-binding protein Y 96.0 0.12 2.5E-06 39.1 9.7 41 55-95 200-241 (364)
356 KOG0467 Translation elongation 96.0 0.0098 2.1E-07 48.4 4.2 58 1-65 75-135 (887)
357 TIGR00064 ftsY signal recognit 96.0 0.068 1.5E-06 38.8 8.1 72 21-104 190-261 (272)
358 PHA02518 ParA-like protein; Pr 95.7 0.1 2.2E-06 35.8 8.0 62 2-66 81-145 (211)
359 cd01900 YchF YchF subfamily. 95.7 0.084 1.8E-06 38.4 7.6 42 55-96 196-238 (274)
360 KOG2486 Predicted GTPase [Gene 95.6 0.012 2.6E-07 42.6 3.0 101 2-108 187-313 (320)
361 KOG0463 GTP-binding protein GP 95.6 0.077 1.7E-06 40.3 7.2 99 2-105 223-352 (641)
362 TIGR03348 VI_IcmF type VI secr 95.2 0.13 2.9E-06 44.6 8.2 49 21-69 201-258 (1169)
363 COG1149 MinD superfamily P-loo 95.2 0.2 4.4E-06 36.3 7.8 63 17-89 181-243 (284)
364 PRK10416 signal recognition pa 95.2 0.17 3.8E-06 37.6 7.8 73 21-105 232-304 (318)
365 PF00448 SRP54: SRP54-type pro 95.0 0.19 4.2E-06 34.6 7.2 88 2-101 88-181 (196)
366 cd02038 FleN-like FleN is a me 95.0 0.14 3.1E-06 33.0 6.3 61 2-66 49-109 (139)
367 PRK14974 cell division protein 94.9 0.42 9.1E-06 35.8 9.3 92 2-105 227-324 (336)
368 KOG1486 GTP-binding protein DR 94.9 0.36 7.7E-06 34.9 8.3 50 55-111 239-288 (364)
369 PF14331 ImcF-related_N: ImcF- 94.7 0.26 5.7E-06 35.6 7.7 93 21-113 25-133 (266)
370 TIGR03371 cellulose_yhjQ cellu 94.7 0.41 8.8E-06 33.7 8.5 62 2-66 119-180 (246)
371 cd03111 CpaE_like This protein 94.6 0.22 4.7E-06 30.7 6.2 59 2-63 47-106 (106)
372 TIGR01425 SRP54_euk signal rec 94.5 0.27 5.8E-06 38.1 7.6 81 2-92 187-273 (429)
373 cd02036 MinD Bacterial cell di 94.5 0.56 1.2E-05 31.1 8.4 81 2-89 67-147 (179)
374 KOG0447 Dynamin-like GTP bindi 94.5 1.3 2.9E-05 35.6 11.3 98 9-109 436-542 (980)
375 COG0523 Putative GTPases (G3E 94.4 0.33 7.1E-06 36.2 7.6 95 2-104 89-194 (323)
376 KOG0459 Polypeptide release fa 94.2 0.044 9.5E-07 41.8 2.7 103 2-104 161-279 (501)
377 KOG4273 Uncharacterized conser 94.0 0.072 1.6E-06 38.3 3.4 49 19-69 76-124 (418)
378 cd03112 CobW_like The function 94.0 0.2 4.4E-06 33.2 5.4 59 2-66 91-158 (158)
379 PRK13505 formate--tetrahydrofo 94.0 0.81 1.8E-05 36.5 9.3 56 54-111 372-429 (557)
380 KOG0464 Elongation factor G [T 93.9 0.02 4.3E-07 43.9 0.4 63 1-67 105-167 (753)
381 PRK00771 signal recognition pa 93.7 0.5 1.1E-05 36.7 7.7 82 2-93 180-267 (437)
382 COG4963 CpaE Flp pilus assembl 93.1 0.86 1.9E-05 34.5 7.9 63 2-67 222-284 (366)
383 TIGR00959 ffh signal recogniti 93.1 1 2.2E-05 35.0 8.5 82 2-93 187-274 (428)
384 PRK12727 flagellar biosynthesi 93.1 1.6 3.6E-05 34.9 9.7 84 2-99 433-523 (559)
385 TIGR00993 3a0901s04IAP86 chlor 93.0 1 2.2E-05 37.0 8.5 67 2-68 170-250 (763)
386 KOG3929 Uncharacterized conser 92.8 0.34 7.3E-06 35.1 5.1 36 1-36 95-134 (363)
387 cd03115 SRP The signal recogni 92.5 1.7 3.7E-05 28.9 8.2 79 2-90 87-171 (173)
388 KOG2485 Conserved ATP/GTP bind 92.0 1.1 2.4E-05 33.3 7.0 88 15-109 40-129 (335)
389 cd03114 ArgK-like The function 92.0 0.52 1.1E-05 30.9 5.0 53 2-65 96-148 (148)
390 PRK10867 signal recognition pa 91.8 2.2 4.8E-05 33.2 9.0 82 2-93 188-275 (433)
391 PF01656 CbiA: CobQ/CobB/MinD/ 91.7 0.32 6.9E-06 32.8 4.0 63 2-67 99-161 (195)
392 COG3523 IcmF Type VI protein s 90.9 2.2 4.8E-05 37.2 8.7 50 20-69 213-271 (1188)
393 TIGR01968 minD_bact septum sit 90.8 2.6 5.7E-05 29.7 8.1 60 2-66 116-175 (261)
394 PRK12726 flagellar biosynthesi 90.7 1.7 3.7E-05 33.4 7.2 87 2-100 290-382 (407)
395 PRK05703 flhF flagellar biosyn 90.4 3.8 8.2E-05 31.8 9.0 90 2-103 304-401 (424)
396 CHL00175 minD septum-site dete 89.9 3.1 6.7E-05 30.1 7.9 60 2-66 131-190 (281)
397 KOG0469 Elongation factor 2 [T 89.7 0.3 6.4E-06 38.7 2.5 60 1-66 101-162 (842)
398 PRK06731 flhF flagellar biosyn 89.3 4 8.8E-05 29.7 8.0 86 2-100 159-251 (270)
399 PRK14723 flhF flagellar biosyn 88.9 9.3 0.0002 32.1 10.6 94 2-104 268-368 (767)
400 cd02042 ParA ParA and ParB of 88.7 2.6 5.6E-05 25.4 5.9 41 2-45 44-84 (104)
401 PF09419 PGP_phosphatase: Mito 88.4 5.9 0.00013 26.7 9.5 86 19-107 36-128 (168)
402 PF03193 DUF258: Protein of un 88.4 1.3 2.7E-05 29.7 4.5 32 76-107 3-34 (161)
403 PRK13185 chlL protochlorophyll 88.1 7 0.00015 28.0 8.7 78 2-88 122-201 (270)
404 PRK12723 flagellar biosynthesi 88.0 5.1 0.00011 30.8 8.1 91 2-104 259-357 (388)
405 PRK13849 putative crown gall t 88.0 6.2 0.00013 27.9 8.1 61 2-65 88-151 (231)
406 PRK06995 flhF flagellar biosyn 87.5 4.6 9.9E-05 32.0 7.7 91 2-104 339-436 (484)
407 PRK11889 flhF flagellar biosyn 87.4 6.4 0.00014 30.6 8.2 80 2-92 325-411 (436)
408 cd02037 MRP-like MRP (Multiple 86.9 6.9 0.00015 25.9 8.7 83 2-89 72-162 (169)
409 PRK11537 putative GTP-binding 86.8 4.2 9.1E-05 30.3 7.0 92 2-103 95-196 (318)
410 cd02117 NifH_like This family 86.6 8.5 0.00018 26.6 8.7 66 20-90 140-207 (212)
411 COG1419 FlhF Flagellar GTP-bin 86.5 4.3 9.2E-05 31.3 6.9 86 2-99 286-377 (407)
412 PRK10818 cell division inhibit 86.5 7.9 0.00017 27.7 8.2 62 2-66 118-185 (270)
413 TIGR01969 minD_arch cell divis 86.2 9.5 0.0002 26.7 10.2 60 2-66 113-172 (251)
414 PRK14722 flhF flagellar biosyn 86.0 7 0.00015 29.9 7.8 85 2-92 220-315 (374)
415 KOG1534 Putative transcription 85.0 1.2 2.7E-05 31.4 3.1 108 2-111 102-251 (273)
416 PF07015 VirC1: VirC1 protein; 84.1 8.3 0.00018 27.4 7.0 98 2-104 88-187 (231)
417 PRK14721 flhF flagellar biosyn 83.5 18 0.00038 28.2 9.2 91 2-104 274-371 (420)
418 COG0552 FtsY Signal recognitio 83.4 15 0.00032 27.8 8.3 90 2-104 226-328 (340)
419 cd02032 Bchl_like This family 83.4 14 0.00031 26.4 8.5 63 2-66 120-184 (267)
420 TIGR02475 CobW cobalamin biosy 82.7 12 0.00025 28.3 7.8 95 2-104 97-223 (341)
421 TIGR01007 eps_fam capsular exo 82.5 6 0.00013 27.1 5.8 62 2-67 132-193 (204)
422 PF10087 DUF2325: Uncharacteri 82.2 7.3 0.00016 23.4 5.5 45 55-106 49-93 (97)
423 COG0012 Predicted GTPase, prob 82.0 6.1 0.00013 30.1 6.0 42 54-96 206-249 (372)
424 PRK12724 flagellar biosynthesi 81.9 13 0.00028 29.1 7.8 82 2-93 304-394 (432)
425 PF09547 Spore_IV_A: Stage IV 80.7 21 0.00045 28.1 8.5 82 22-108 146-234 (492)
426 KOG0781 Signal recognition par 80.6 14 0.00029 29.5 7.5 88 2-92 471-565 (587)
427 PF02492 cobW: CobW/HypB/UreG, 79.7 2 4.4E-05 28.9 2.7 58 21-84 113-170 (178)
428 cd00477 FTHFS Formyltetrahydro 76.9 20 0.00044 28.7 7.5 67 43-111 345-413 (524)
429 cd02035 ArsA ArsA ATPase funct 74.9 20 0.00043 24.9 6.6 62 2-66 118-182 (217)
430 COG2759 MIS1 Formyltetrahydrof 74.4 34 0.00074 27.1 8.1 68 43-112 358-427 (554)
431 TIGR02016 BchX chlorophyllide 74.1 32 0.0007 25.3 10.6 92 20-119 146-257 (296)
432 PRK13507 formate--tetrahydrofo 73.7 29 0.00063 28.2 7.7 67 43-111 390-458 (587)
433 PF08438 MMR_HSR1_C: GTPase of 70.3 6 0.00013 24.7 2.8 31 60-94 1-32 (109)
434 cd04170 EF-G_bact Elongation f 70.0 4.5 9.7E-05 29.1 2.5 25 86-110 241-265 (268)
435 PF01268 FTHFS: Formate--tetra 69.4 7.7 0.00017 31.2 3.8 89 21-111 321-428 (557)
436 TIGR01281 DPOR_bchL light-inde 69.4 38 0.00083 24.1 9.5 63 2-66 120-184 (268)
437 cd02033 BchX Chlorophyllide re 69.3 46 0.001 25.0 11.8 86 22-115 173-277 (329)
438 PRK13506 formate--tetrahydrofo 68.2 45 0.00097 27.1 7.7 67 43-111 382-451 (578)
439 KOG4102 Uncharacterized conser 68.1 1.8 3.8E-05 27.2 0.1 11 133-143 56-66 (121)
440 KOG1533 Predicted GTPase [Gene 66.9 7.6 0.00016 28.0 3.0 64 2-67 101-176 (290)
441 KOG1487 GTP-binding protein DR 66.8 9.5 0.0002 28.0 3.5 82 15-111 200-281 (358)
442 PLN02759 Formate--tetrahydrofo 66.7 42 0.00092 27.5 7.3 66 44-111 440-508 (637)
443 KOG0446 Vacuolar sorting prote 66.6 1.6 3.5E-05 35.8 -0.3 57 10-68 157-213 (657)
444 PF07491 PPI_Ypi1: Protein pho 65.9 4.2 9.2E-05 22.4 1.3 9 135-143 32-40 (60)
445 PF03709 OKR_DC_1_N: Orn/Lys/A 65.2 31 0.00066 21.5 6.6 44 19-64 34-77 (115)
446 CHL00072 chlL photochlorophyll 64.7 53 0.0012 24.1 9.5 63 2-66 120-184 (290)
447 cd01886 EF-G Elongation factor 63.8 14 0.00031 26.7 4.1 25 86-110 243-267 (270)
448 PRK13695 putative NTPase; Prov 61.9 44 0.00095 22.1 9.0 80 16-111 91-173 (174)
449 PTZ00386 formyl tetrahydrofola 61.7 71 0.0015 26.3 7.7 67 43-111 426-496 (625)
450 TIGR03488 cas_Cas5p CRISPR-ass 61.6 7.4 0.00016 26.3 2.1 74 8-93 113-188 (237)
451 TIGR01005 eps_transp_fam exopo 60.7 32 0.00069 28.8 6.1 61 2-66 660-720 (754)
452 TIGR03815 CpaE_hom_Actino heli 59.2 43 0.00093 24.7 6.0 57 2-64 209-265 (322)
453 KOG1249 Predicted GTPases [Gen 59.1 22 0.00047 28.7 4.5 88 16-110 105-210 (572)
454 PRK11670 antiporter inner memb 58.8 80 0.0017 24.1 9.0 62 2-67 220-282 (369)
455 PF00735 Septin: Septin; Inte 57.5 11 0.00025 27.5 2.7 69 21-94 113-184 (281)
456 cd04169 RF3 RF3 subfamily. Pe 57.3 11 0.00024 27.3 2.6 25 86-110 240-264 (267)
457 COG0541 Ffh Signal recognition 57.2 95 0.0021 24.5 8.2 81 2-92 187-273 (451)
458 cd01983 Fer4_NifH The Fer4_Nif 56.6 35 0.00076 19.3 5.7 33 2-34 38-71 (99)
459 PF13881 Rad60-SLD_2: Ubiquiti 56.2 7.1 0.00015 24.4 1.3 22 19-42 10-31 (111)
460 PRK10037 cell division protein 52.8 80 0.0017 22.3 6.7 29 2-32 122-150 (250)
461 cd07388 MPP_Tt1561 Thermus the 52.8 52 0.0011 23.3 5.3 60 3-65 11-73 (224)
462 KOG2655 Septin family protein 52.4 66 0.0014 24.7 6.0 69 21-95 129-201 (366)
463 PF10881 DUF2726: Protein of u 52.2 56 0.0012 20.5 5.0 34 76-109 92-125 (126)
464 COG0420 SbcD DNA repair exonuc 50.9 34 0.00075 26.0 4.5 46 20-65 39-87 (390)
465 COG1010 CobJ Precorrin-3B meth 50.5 60 0.0013 23.4 5.2 46 19-64 152-197 (249)
466 PF14784 ECIST_Cterm: C-termin 48.8 40 0.00087 21.6 3.8 39 21-59 83-123 (126)
467 PRK13232 nifH nitrogenase redu 48.4 1E+02 0.0022 22.1 7.8 45 20-65 140-185 (273)
468 TIGR00640 acid_CoA_mut_C methy 47.7 73 0.0016 20.4 5.4 75 23-111 53-128 (132)
469 cd02040 NifH NifH gene encodes 47.3 1E+02 0.0022 21.9 8.8 62 2-64 121-185 (270)
470 cd02067 B12-binding B12 bindin 47.2 53 0.0011 20.2 4.3 42 21-64 50-91 (119)
471 PF07846 Metallothio_Cad: Meta 46.1 12 0.00025 15.8 0.7 8 137-144 14-21 (21)
472 TIGR03029 EpsG chain length de 45.6 82 0.0018 22.5 5.6 28 19-47 233-260 (274)
473 KOG2743 Cobalamin synthesis pr 45.6 37 0.00081 25.6 3.7 66 2-70 150-227 (391)
474 PF02662 FlpD: Methyl-viologen 45.5 78 0.0017 20.1 6.8 35 78-112 83-122 (124)
475 TIGR00503 prfC peptide chain r 44.9 23 0.0005 28.4 2.8 28 86-113 250-277 (527)
476 PF07894 DUF1669: Protein of u 44.7 55 0.0012 24.2 4.5 50 11-66 135-186 (284)
477 PRK05428 HPr kinase/phosphoryl 42.7 1.4E+02 0.0031 22.3 6.4 57 45-112 73-129 (308)
478 PF02603 Hpr_kinase_N: HPr Ser 42.5 32 0.0007 21.8 2.7 42 47-95 74-115 (127)
479 TIGR03566 FMN_reduc_MsuE FMN r 41.6 48 0.0011 22.0 3.7 48 16-63 63-110 (174)
480 cd02071 MM_CoA_mut_B12_BD meth 41.0 89 0.0019 19.5 4.8 41 21-63 50-90 (122)
481 TIGR00092 GTP-binding protein 40.0 48 0.001 25.4 3.7 31 2-32 71-108 (368)
482 PF05014 Nuc_deoxyrib_tr: Nucl 39.5 89 0.0019 19.1 4.7 45 17-66 57-101 (113)
483 TIGR03018 pepcterm_TyrKin exop 39.3 1.1E+02 0.0024 20.9 5.3 14 19-32 169-182 (207)
484 PRK11148 cyclic 3',5'-adenosin 39.0 81 0.0017 22.7 4.7 42 21-65 55-97 (275)
485 PF03641 Lysine_decarbox: Poss 39.0 1E+02 0.0022 19.6 4.8 44 17-62 49-92 (133)
486 cd00959 DeoC 2-deoxyribose-5-p 38.2 1.3E+02 0.0029 20.6 7.5 69 20-92 81-151 (203)
487 KOG1547 Septin CDC10 and relat 37.3 1.3E+02 0.0029 22.0 5.3 79 21-104 155-236 (336)
488 PRK13705 plasmid-partitioning 37.0 1.9E+02 0.0042 22.2 8.1 63 2-67 239-307 (388)
489 cd07393 MPP_DR1119 Deinococcus 36.3 94 0.002 21.8 4.6 46 15-63 35-81 (232)
490 TIGR01295 PedC_BrcD bacterioci 36.2 1.1E+02 0.0024 19.1 4.9 6 25-30 27-32 (122)
491 PRK13660 hypothetical protein; 36.1 1.4E+02 0.0031 20.4 5.5 16 19-34 127-142 (182)
492 COG1908 FrhD Coenzyme F420-red 36.0 1E+02 0.0022 19.8 4.0 59 55-113 55-124 (132)
493 TIGR03567 FMN_reduc_SsuE FMN r 36.0 52 0.0011 21.9 3.1 48 16-63 60-107 (171)
494 cd07379 MPP_239FB Homo sapiens 35.7 61 0.0013 20.4 3.3 44 19-64 17-61 (135)
495 PRK06756 flavodoxin; Provision 35.7 75 0.0016 20.4 3.8 44 19-62 47-91 (148)
496 PRK13869 plasmid-partitioning 35.0 2.1E+02 0.0046 22.1 7.7 62 2-66 256-326 (405)
497 TIGR03453 partition_RepA plasm 35.0 2.1E+02 0.0044 21.9 8.1 63 2-66 239-309 (387)
498 PF12327 FtsZ_C: FtsZ family, 33.7 1.1E+02 0.0024 18.3 5.3 52 13-65 27-78 (95)
499 PF08468 MTS_N: Methyltransfer 33.5 1.2E+02 0.0026 20.1 4.5 42 20-65 68-109 (155)
500 PF03358 FMN_red: NADPH-depend 32.8 1.3E+02 0.0029 19.1 6.0 73 16-89 65-140 (152)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-34 Score=189.65 Aligned_cols=143 Identities=66% Similarity=1.046 Sum_probs=126.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|||||+||+||+.+...||+++|++|||||+++..||+.+..|+..+..+....+|.++||||.|+.+.+.++.++++.+
T Consensus 61 QIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~f 140 (205)
T KOG0084|consen 61 QIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEF 140 (205)
T ss_pred EeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHcCCc-EEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCC-CCCCCCCCCcC
Q 032243 81 ADEIGIP-FMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKG-QPVAQKSGCCS 143 (144)
Q Consensus 81 ~~~~~~~-~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~ 143 (144)
+..++++ ++++||+++.+++++|..|+..++.+.......+....+..+... +..+...+||+
T Consensus 141 a~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 141 ADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCCE 205 (205)
T ss_pred HHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCCC
Confidence 9999998 999999999999999999999999887777766643334444444 33356666874
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-33 Score=183.80 Aligned_cols=143 Identities=42% Similarity=0.717 Sum_probs=123.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
.||||+||+||..+.+.||++++++|+|||+++.+||..++.|+..+....++++-+.|+|||.||...+.+..+++..+
T Consensus 57 eIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~y 136 (200)
T KOG0092|consen 57 EIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAY 136 (200)
T ss_pred EEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHH
Confidence 38999999999999999999999999999999999999999999999988877788888999999988889999999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCC-CCCCCCCCcC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQ-PVAQKSGCCS 143 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~~ 143 (144)
++..++.++++||++|.|++++|..|.+.+............+.+.....+.. +++++++||+
T Consensus 137 Ae~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 137 AESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred HHhcCCEEEEEecccccCHHHHHHHHHHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence 99999999999999999999999999999976555554433333233333322 6678888986
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.1e-31 Score=176.92 Aligned_cols=116 Identities=54% Similarity=0.945 Sum_probs=110.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|+|||+||++|+.+...|+++|+++++|||++++.||+.+..|+..+..+.+..+|.+|||||+|+...+.++.+.++++
T Consensus 64 QiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l 143 (207)
T KOG0078|consen 64 QIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL 143 (207)
T ss_pred EEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999888899999999999998899999999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
+.++|+.++++||++|.||++.|-.|++.++.+...
T Consensus 144 A~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 144 AREYGIKFFETSAKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred HHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence 999999999999999999999999999999864444
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-31 Score=176.05 Aligned_cols=115 Identities=43% Similarity=0.688 Sum_probs=107.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
|+|||+||+||+.+.+.|++++.++|+|||+++..||+.+..|+..++..... .+.++|||||.||.++++++.++...
T Consensus 74 QlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~ 153 (221)
T KOG0094|consen 74 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGER 153 (221)
T ss_pred EEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHH
Confidence 79999999999999999999999999999999999999999999999888765 58889999999999999999999999
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
.+++++..++++||+.|+|++++|..|+..+.....
T Consensus 154 kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 154 KAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred HHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 999999999999999999999999999998876543
No 5
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=168.37 Aligned_cols=143 Identities=34% Similarity=0.678 Sum_probs=119.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
.||||+||++|..+.+.||++++++++|||++|++||..++.|...++......+-.++|+||+||..++.++.+++..+
T Consensus 65 ~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~Y 144 (218)
T KOG0088|consen 65 HIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAY 144 (218)
T ss_pred eeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHH
Confidence 38999999999999999999999999999999999999999999999888776788899999999998899999999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCC----------CCCCCccccCCCCCCCCCCCcC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN----------NARPPTVQIKGQPVAQKSGCCS 143 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~c~~ 143 (144)
++..|..++++||+.+.||.++|+.+-....++.......- .......-...+-++++++||.
T Consensus 145 AesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC~ 217 (218)
T KOG0088|consen 145 AESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCCR 217 (218)
T ss_pred HHhhchhheecccccccCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCccC
Confidence 99999999999999999999999999887776542222211 1111222233345567888885
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=7.8e-29 Score=171.04 Aligned_cols=113 Identities=47% Similarity=0.870 Sum_probs=102.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|+.+++.|++++|++|+|||++++.+|+.+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus 52 ~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~ 131 (202)
T cd04120 52 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKF 131 (202)
T ss_pred EEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 58999999999999999999999999999999999999999999988776656799999999999977777878888888
Q ss_pred HHHc-CCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
++.. ++.++++||++|.|++++|++++..+...
T Consensus 132 a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 132 AQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 8775 78999999999999999999999988754
No 7
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=9.8e-29 Score=172.44 Aligned_cols=141 Identities=35% Similarity=0.527 Sum_probs=117.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA------------ 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------ 68 (144)
+||||+|+++|..++..++.++|++|+|||++++.+|..+..|+..+........|+++|+||.|+..
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~ 126 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAG 126 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccccccccc
Confidence 48999999999999999999999999999999999999999888888665545689999999999965
Q ss_pred -------CcccCHHHHHHHHHHcC--------------CcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCc
Q 032243 69 -------NKVVSYETAKAFADEIG--------------IPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPT 127 (144)
Q Consensus 69 -------~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 127 (144)
.+.++.+++..+++..+ .+++++||++|.|++++|..++..+.....++..+.+.-...
T Consensus 127 ~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~ 206 (220)
T cd04126 127 DRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGT 206 (220)
T ss_pred ccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 46777889999998876 579999999999999999999999987777766655443333
Q ss_pred cccCCCCCCCCCCCc
Q 032243 128 VQIKGQPVAQKSGCC 142 (144)
Q Consensus 128 ~~~~~~~~~~~~~c~ 142 (144)
..+. .+.+++++||
T Consensus 207 ~~~~-~~~~~~~~~~ 220 (220)
T cd04126 207 VNLP-NPKRSKSKCC 220 (220)
T ss_pred ccCC-CcccCCCCCC
Confidence 2222 2556788888
No 8
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-28 Score=165.99 Aligned_cols=113 Identities=50% Similarity=0.816 Sum_probs=107.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|||||+||+||+.+...||+++.++++|||++...+|+.+..|+..++.+...++++++||||+||...+.++.+++..+
T Consensus 66 qIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~ 145 (222)
T KOG0087|consen 66 QIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAF 145 (222)
T ss_pred eeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhH
Confidence 79999999999999999999999999999999999999999999999999988999999999999988888889999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
++..++.++++||..+.|++.+|+.++..+...
T Consensus 146 Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 146 AEKEGLFFLETSALDATNVEKAFERVLTEIYKI 178 (222)
T ss_pred HHhcCceEEEecccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888887643
No 9
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-28 Score=161.82 Aligned_cols=119 Identities=48% Similarity=0.785 Sum_probs=111.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|||||+||++|++..+.||+++-++|+|||++.+++|+.+..|+..++.+..++..++|++||.||...+.++.++...+
T Consensus 58 qiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaF 137 (216)
T KOG0098|consen 58 QIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAF 137 (216)
T ss_pred EEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999877899999999999998899999999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 119 (144)
++++++.++++||+++.|+++.|...+..+.+.......
T Consensus 138 A~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~~ 176 (216)
T KOG0098|consen 138 AREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGVF 176 (216)
T ss_pred HHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999998876555444
No 10
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=157.68 Aligned_cols=139 Identities=47% Similarity=0.744 Sum_probs=118.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|||||+|+++|+.+...|+++.+++++|||.++.+||..+..|+..++..++ ..|-++||||.|+...+.+..++++.+
T Consensus 60 qIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~ 138 (198)
T KOG0079|consen 60 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAF 138 (198)
T ss_pred EEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHH
Confidence 7999999999999999999999999999999999999999999999999886 689999999999988888889999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 142 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 142 (144)
+..+++.+|++||+.+.|++..|.-|.+.+.+.............. -.-+++++..++||
T Consensus 139 A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~r~~~~~~r~~~--~~l~~n~~~~~k~c 198 (198)
T KOG0079|consen 139 ALQMGIELFETSAKENENVEAMFHCITKQVLQAKLRESVEQQRADA--VSLKDNSKSTKKCC 198 (198)
T ss_pred HHhcCchheehhhhhcccchHHHHHHHHHHHHHHHhhcHHHHhhcc--eEeccCCCccccCC
Confidence 9999999999999999999999999999988776332222221111 11124566777888
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=2.5e-28 Score=161.40 Aligned_cols=143 Identities=34% Similarity=0.571 Sum_probs=114.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCC--cccCH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTAN--KVVSY 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~--~~~~~ 74 (144)
|||||+||+||.++...||+++|.++++||++++.+|+.+..|-..+..+.. ...|+||+|||+|+..+ +.++.
T Consensus 61 QiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~ 140 (210)
T KOG0394|consen 61 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSE 140 (210)
T ss_pred EEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeH
Confidence 7999999999999999999999999999999999999999999999876643 47899999999998653 67889
Q ss_pred HHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCcCC
Q 032243 75 ETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST 144 (144)
Q Consensus 75 ~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 144 (144)
..++.++...| +|+|++||+.+.|+++.|+.+...+...-.........-........+..++++ ||-|
T Consensus 141 ~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~~~~~~-~c~c 210 (210)
T KOG0394|consen 141 KKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDREIAELADYSDQIVLSTKANNQSS-GCEC 210 (210)
T ss_pred HHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccchhhhhhhhcCcccccccccccCCC-CCCC
Confidence 99999999876 799999999999999999999998875333212112222333344444444444 5543
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=1e-27 Score=164.00 Aligned_cols=111 Identities=42% Similarity=0.712 Sum_probs=103.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..+++.|++++|++|+|||++++.+|+.+..|+..+.... ...|++|||||.|+...+.++.+++..+
T Consensus 58 ~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~ 136 (189)
T cd04121 58 QLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAY 136 (189)
T ss_pred EEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHH
Confidence 589999999999999999999999999999999999999999999997765 4699999999999977677888899999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
++..+++++++||++|.|++++|+++++.+..
T Consensus 137 a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 137 AERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998864
No 13
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.1e-27 Score=165.31 Aligned_cols=142 Identities=35% Similarity=0.579 Sum_probs=114.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCcccCHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANKVVSYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~ 76 (144)
+||||+|+++|..+++.+++++|++|+|||++++.+|+.+..|+..+.... ...+|+++|+||.|+.....+..++
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 132 (201)
T cd04107 53 QLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ 132 (201)
T ss_pred EEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH
Confidence 489999999999999999999999999999999999999999988876532 2468999999999997556667888
Q ss_pred HHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCC--CCccccCCCCCCCCCCCc
Q 032243 77 AKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNAR--PPTVQIKGQPVAQKSGCC 142 (144)
Q Consensus 77 ~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~c~ 142 (144)
+..+++..+ .+++++||++|.|++++|++|++.+.............. +....++....+++++||
T Consensus 133 ~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 133 MDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 888998888 699999999999999999999999876554444433322 222233333445666788
No 14
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.6e-28 Score=157.50 Aligned_cols=119 Identities=41% Similarity=0.728 Sum_probs=109.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
|+|||+||++|+++...|++++.+++++||++++.||.++.+|++.+..+.- .+..+++++||+||.+.+.++..++..
T Consensus 70 QlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~ 149 (219)
T KOG0081|consen 70 QLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAA 149 (219)
T ss_pred eeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHH
Confidence 7999999999999999999999999999999999999999999999966543 357789999999999999999999999
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 119 (144)
++..+++|+|++||-+|.|+++..+.+.+.++++..+--+
T Consensus 150 La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v~ 189 (219)
T KOG0081|consen 150 LADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCVE 189 (219)
T ss_pred HHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887655444
No 15
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=1.6e-27 Score=163.18 Aligned_cols=136 Identities=31% Similarity=0.548 Sum_probs=111.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
+||||+|+++|..++..++.++|++++|||+++..+|+.+..|+..+..... ...|+++|+||+|+...+.+...+.
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~ 129 (190)
T cd04144 50 EVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG 129 (190)
T ss_pred EEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH
Confidence 4899999999999999999999999999999999999999999888865532 4689999999999976666777777
Q ss_pred HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCc
Q 032243 78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 142 (144)
Q Consensus 78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 142 (144)
..++...+++++++||++|.|++++|+++++.+..+..... +|.....+.+++++.+||
T Consensus 130 ~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 130 AALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ------GPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcccC------CCcCCCCCcccccccCce
Confidence 78888888999999999999999999999998875554432 333333444555555555
No 16
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-28 Score=155.90 Aligned_cols=116 Identities=50% Similarity=0.928 Sum_probs=110.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|+|||+|+++|+.+.-.|+++++++|++||+++++||+.++.|...+..++..+.|+++++||+|+..++.++.+..+.+
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l 152 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQL 152 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
+..+|+.+|++||+.+.|++++|+.++..+-+.+..
T Consensus 153 ~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 153 ADQLGFEFFETSAKENINVKQVFERLVDIICDKMSE 188 (193)
T ss_pred HHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998765543
No 17
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=5.1e-27 Score=160.75 Aligned_cols=139 Identities=45% Similarity=0.802 Sum_probs=115.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++|+|||++++.+|+.+..|+..+........|+++++||.|+...+.+...++..+
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l 132 (191)
T cd04112 53 QIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERL 132 (191)
T ss_pred EEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999887666789999999999976666667788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 142 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 142 (144)
+...+.+++++||++|.|++++|++|++.+.......+...+.. .+.-....+|.++||
T Consensus 133 ~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 191 (191)
T cd04112 133 AKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYEQPDEGKFK---ISDYVTKQKKISRCC 191 (191)
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccccCCCCcEE---eccccCcccccCCCC
Confidence 88888999999999999999999999999976643333332222 233334556888998
No 18
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=7.5e-27 Score=158.10 Aligned_cols=114 Identities=40% Similarity=0.626 Sum_probs=102.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..|++++|++|+|||++++.+|+.+..|+..+........|++||+||+|+...+.+...++..+
T Consensus 32 ~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~ 111 (176)
T PTZ00099 32 QLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQK 111 (176)
T ss_pred EEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999988766545689999999999976566777888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+...++.++++||++|.|++++|++|+..+....
T Consensus 112 ~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 112 AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 8888889999999999999999999999986533
No 19
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=1.3e-26 Score=159.77 Aligned_cols=141 Identities=48% Similarity=0.756 Sum_probs=117.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++++|||++++.+|..+..|+..+.... ...|+++|+||.|+.+...+...++..+
T Consensus 58 ~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~ 136 (199)
T cd04110 58 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKF 136 (199)
T ss_pred EEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHH
Confidence 489999999999999999999999999999999999999999999887655 3689999999999976666667788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccC-CCCCCCCCCccccCCCCCCCCCCCc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ-PSMNNARPPTVQIKGQPVAQKSGCC 142 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~c~ 142 (144)
+...+++++++||++|.|++++|++|...+...+... ............-.+.+.+++++||
T Consensus 137 ~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 137 AGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence 8888899999999999999999999999987543333 3333333444455556668999998
No 20
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.5e-27 Score=154.70 Aligned_cols=113 Identities=47% Similarity=0.780 Sum_probs=105.9
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
||||+||++|+.+.+.||+++.++|+|||++.+++|..+..|+..+..++. +++..++|+||+|...++.++.++...+
T Consensus 64 iWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kf 143 (209)
T KOG0080|consen 64 IWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKF 143 (209)
T ss_pred EEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHH
Confidence 799999999999999999999999999999999999999999999988875 4677799999999887889999999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
++.++.-++++||++.+|+...|+.++..+.+..
T Consensus 144 Ar~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 144 ARKHRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred HHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999988643
No 21
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=150.82 Aligned_cols=116 Identities=47% Similarity=0.769 Sum_probs=106.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
|+|||+||++|++..+.|++++-++++|||+++..||+-+..|+.....+-. ...-+.+||.|.||...++++.+++.
T Consensus 61 qlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaE 140 (213)
T KOG0091|consen 61 QLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAE 140 (213)
T ss_pred EEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHH
Confidence 7999999999999999999999999999999999999999999998876654 34555788999999999999999999
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
.+++..|+.++++||++|.|+++.|..|...+.....+
T Consensus 141 klAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 141 KLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999876655
No 22
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=2e-26 Score=160.68 Aligned_cols=114 Identities=46% Similarity=0.795 Sum_probs=103.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++++++++|+|||++++.+|+.+..|+..+......+.|+++|+||.|+...+.+..+++..+
T Consensus 64 ~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l 143 (216)
T PLN03110 64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQAL 143 (216)
T ss_pred EEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999998877666799999999999976667777788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+...+++++++||++|.|++++|++|+..+.+..
T Consensus 144 ~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 144 AEKEGLSFLETSALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999987643
No 23
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=3.2e-27 Score=149.20 Aligned_cols=121 Identities=45% Similarity=0.843 Sum_probs=111.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|+|||+||++|++....|++++|+++++||+.++.||++.+.|+..+..+..+.+.+++++||+|+..++.+..++...+
T Consensus 50 qiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kl 129 (192)
T KOG0083|consen 50 QIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKL 129 (192)
T ss_pred EEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHH
Confidence 79999999999999999999999999999999999999999999999998877888999999999977777888899999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 121 (144)
++..++|+.++||++|.|++..|-.|++.+++.+-.-++..
T Consensus 130 a~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~~~~~~~ 170 (192)
T KOG0083|consen 130 AEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKMGAPPEG 170 (192)
T ss_pred HHHHCCCceeccccccccHhHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999987665555443
No 24
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=1.1e-25 Score=153.59 Aligned_cols=135 Identities=53% Similarity=0.836 Sum_probs=112.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|..++..+++++|++++|||++++.+|..+..|+..+........|+++++||.|+.....+....+..+
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~ 131 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSF 131 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999877655689999999999976666777787888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCcC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 143 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 143 (144)
+...+++++++||++|.|++++|+++++.+..+...++.. +.+.+...++++||.
T Consensus 132 ~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 186 (188)
T cd04125 132 CDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQELS--------PKNIKQQFKKKNNCF 186 (188)
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCcCC--------ccccccccccccCcc
Confidence 8888899999999999999999999999987543333221 133345556777775
No 25
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=1.6e-25 Score=157.30 Aligned_cols=112 Identities=26% Similarity=0.534 Sum_probs=100.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC-----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA----------- 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~----------- 68 (144)
+||||+|+++|..+++.|+.++|++++|||++++.+|+.+ ..|+..+....+ ..|+++|+||.|+..
T Consensus 64 ~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~ 142 (232)
T cd04174 64 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQ 142 (232)
T ss_pred EEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccc
Confidence 5899999999999999999999999999999999999985 789999887653 589999999999853
Q ss_pred -CcccCHHHHHHHHHHcCC-cEEEeecCCCC-CHHHHHHHHHHHHHHh
Q 032243 69 -NKVVSYETAKAFADEIGI-PFMETSAKDST-NVEQAFMAMAASIKDR 113 (144)
Q Consensus 69 -~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~l~~~i~~~~~~~ 113 (144)
...++.+++.++++..++ .++++||++|. |++++|..++..+.+.
T Consensus 143 ~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 143 KQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 256788899999999998 69999999997 8999999999988754
No 26
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.7e-26 Score=146.46 Aligned_cols=119 Identities=45% Similarity=0.753 Sum_probs=110.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|||||+||++|++..+.|++++.++++|||++++++|+.+..|+...+...++++-+++++||.||.+.++++..++..+
T Consensus 61 QIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~F 140 (214)
T KOG0086|consen 61 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF 140 (214)
T ss_pred EEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 119 (144)
+.+..+-++++||.+|.|+++.|-...+.+..+.....-
T Consensus 141 aqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GEl 179 (214)
T KOG0086|consen 141 AQENELMFLETSALTGENVEEAFLKCARTILNKIESGEL 179 (214)
T ss_pred hcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999998888766555443
No 27
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=1.6e-25 Score=153.36 Aligned_cols=111 Identities=29% Similarity=0.523 Sum_probs=96.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK--------- 70 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------- 70 (144)
+||||+|+++|+.+++.|+.++|++|+|||++++.+|+.+. .|...+.... ...|++||+||.||.+..
T Consensus 54 ~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~ 132 (191)
T cd01875 54 NLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQ 132 (191)
T ss_pred EEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhc
Confidence 58999999999999999999999999999999999999996 5877776554 369999999999995432
Q ss_pred ---ccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 71 ---VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 71 ---~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.+..+++..+++..+ ++++++||++|.|++++|+++++.+..
T Consensus 133 ~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 133 GQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred cCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 355677888888888 599999999999999999999988753
No 28
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=7.6e-25 Score=152.24 Aligned_cols=118 Identities=42% Similarity=0.780 Sum_probs=104.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+++|..++..+++++|++++|||++++.+|+.+..|+..+..... ...|++||+||.|+.....+..++...
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~ 134 (211)
T cd04111 55 QLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEK 134 (211)
T ss_pred EEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHH
Confidence 5899999999999999999999999999999999999999999999876543 357789999999997766777888888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCC
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~ 118 (144)
+++..+++++++||++|.|++++|++|+..+.......+
T Consensus 135 ~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~~ 173 (211)
T cd04111 135 LAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGE 173 (211)
T ss_pred HHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 999889999999999999999999999998876654443
No 29
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-25 Score=141.79 Aligned_cols=113 Identities=47% Similarity=0.829 Sum_probs=106.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|||||+||++|+...+.|++++.+.++|||++.+.+++.+..|+...+..-.++..+++++||.||...+.+..+++..+
T Consensus 63 qiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~f 142 (215)
T KOG0097|consen 63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEF 142 (215)
T ss_pred EEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHH
Confidence 79999999999999999999999999999999999999999999999888777888999999999999999999999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+++.|+.++++||++|.++++.|-..+..+.+-
T Consensus 143 aeengl~fle~saktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 143 AEENGLMFLEASAKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred HhhcCeEEEEecccccCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999998877777654
No 30
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=2.8e-25 Score=151.89 Aligned_cols=113 Identities=38% Similarity=0.663 Sum_probs=100.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..|+.++|++++|||++++.+|+.+..|+..+..... .+.|+++++||.|+.....+...++..
T Consensus 56 ~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~ 135 (189)
T PTZ00369 56 DILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE 135 (189)
T ss_pred EEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 4899999999999999999999999999999999999999999988866543 478999999999986666666677777
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+++..+++++++||++|.|++++|++|++.+...
T Consensus 136 ~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 136 LAKSFGIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred HHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999888643
No 31
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.93 E-value=6.8e-25 Score=152.86 Aligned_cols=113 Identities=32% Similarity=0.506 Sum_probs=101.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
+||||+|++.|..++..|++++|++|||||++++.+|+.+..|+..+..... ...|+++|+||.|+...+.+..++.
T Consensus 53 ~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~ 132 (215)
T cd04109 53 QVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKH 132 (215)
T ss_pred EEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHH
Confidence 5899999999999999999999999999999999999999999999877642 3468999999999976667777888
Q ss_pred HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
..++...+++++++||++|.|++++|++++..+...
T Consensus 133 ~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 133 ARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 888888899999999999999999999999998754
No 32
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=5.9e-25 Score=147.16 Aligned_cols=111 Identities=50% Similarity=0.847 Sum_probs=101.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|..+++.+++++|++|+|||++++.+|+.+..|+..+........|+++|+||.|+.....++.+++..+
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~ 133 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQF 133 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHH
Confidence 48999999999999999999999999999999999999999999988776556789999999999977777778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+...+++++++||++|.|++++|.+++..+.
T Consensus 134 ~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~ 164 (166)
T cd04122 134 ADENGLLFLECSAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9888999999999999999999999998764
No 33
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.93 E-value=1.7e-25 Score=151.54 Aligned_cols=110 Identities=34% Similarity=0.621 Sum_probs=98.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANK--------- 70 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------- 70 (144)
+||||+|+++|..++..+++++|++|+|||++++.||+.+ ..|+..+..... +.|++|||||.|+.+.+
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~ 130 (176)
T cd04133 52 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGA 130 (176)
T ss_pred EEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCC
Confidence 5899999999999999999999999999999999999998 689999876653 69999999999995432
Q ss_pred -ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 71 -VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 71 -~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.++.+++..+++..+. .++++||++|.|++++|+.+++.+.
T Consensus 131 ~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 131 SPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 4778889999999987 6999999999999999999998763
No 34
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.93 E-value=4e-25 Score=150.44 Aligned_cols=110 Identities=31% Similarity=0.596 Sum_probs=98.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC-----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA----------- 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~----------- 68 (144)
+||||+|+++|..+++.++.++|++++|||++++.+|+.+ ..|+..+....+ ..|++|||||.|+..
T Consensus 56 ~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~ 134 (182)
T cd04172 56 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNH 134 (182)
T ss_pred EEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhc
Confidence 5899999999999999999999999999999999999997 789999877664 689999999999853
Q ss_pred -CcccCHHHHHHHHHHcCC-cEEEeecCCCCC-HHHHHHHHHHHHH
Q 032243 69 -NKVVSYETAKAFADEIGI-PFMETSAKDSTN-VEQAFMAMAASIK 111 (144)
Q Consensus 69 -~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~l~~~i~~~~~ 111 (144)
.+.++.+++.++++..++ +++++||++|.| ++++|..++....
T Consensus 135 ~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 135 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 245788999999999995 899999999998 9999999988643
No 35
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=7.1e-25 Score=147.91 Aligned_cols=112 Identities=35% Similarity=0.578 Sum_probs=101.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..++.++|++++|||++++.+|..+..|+..+.... ....|+++|+||.|+.....++..+...
T Consensus 53 ~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~ 132 (172)
T cd04141 53 DILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN 132 (172)
T ss_pred EEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH
Confidence 589999999999999999999999999999999999999998888776643 2469999999999997767777888888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+++..+++++++||++|.|++++|++++..+..
T Consensus 133 ~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 133 LAREFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred HHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 998889999999999999999999999988764
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=2.4e-24 Score=145.86 Aligned_cols=112 Identities=44% Similarity=0.776 Sum_probs=101.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..+++++|++++|||++++.+|..+..|+..+..... ...|+++|+||.|+.+.+.+..+++..
T Consensus 66 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~ 145 (180)
T cd04127 66 QLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA 145 (180)
T ss_pred EEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH
Confidence 4899999999999999999999999999999999999999999998876542 368999999999997766777788888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
++...+++++++||++|.|++++|++|.+.+.+
T Consensus 146 ~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 146 LADKYGIPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999987754
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=1.7e-24 Score=144.53 Aligned_cols=109 Identities=40% Similarity=0.802 Sum_probs=100.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|..++..++.++|++++|||++++.+|+.+..|+..+........|+++|+||.|+...+.+..+++..+
T Consensus 52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~ 131 (161)
T cd04117 52 QIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKL 131 (161)
T ss_pred EEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999998777655789999999999977777778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
++..+.+++++||++|.|++++|.+|++.
T Consensus 132 ~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 132 AKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 98888999999999999999999999865
No 38
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.92 E-value=3.9e-24 Score=143.15 Aligned_cols=111 Identities=50% Similarity=0.904 Sum_probs=100.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|..++..+++++|++++|||+++..+|+.+..|+..+........|+++++||+|+.+.+.+..++..++
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~ 132 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQL 132 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999777655789999999999976666667777888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+...+++++++||++|.|++++|++++..+-
T Consensus 133 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 133 ADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8888899999999999999999999988764
No 39
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.92 E-value=2.2e-24 Score=146.79 Aligned_cols=121 Identities=25% Similarity=0.450 Sum_probs=100.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----cccCHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-----KVVSYE 75 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~~~ 75 (144)
+||||+|+++|..++..++.++|++++|||++++.+|+++..|+..+........| ++|+||.|+... .....+
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~ 130 (182)
T cd04128 52 SIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITK 130 (182)
T ss_pred EEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHH
Confidence 58999999999999999999999999999999999999999999998776554566 688999998421 111235
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCC
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~ 122 (144)
+...+++..+++++++||++|.|++++|+++++.+.+.....++.+.
T Consensus 131 ~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~~~~~~~~ 177 (182)
T cd04128 131 QARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLPLTIPEILT 177 (182)
T ss_pred HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCChhhhcC
Confidence 56677888889999999999999999999999998765555554443
No 40
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.4e-25 Score=141.88 Aligned_cols=119 Identities=45% Similarity=0.778 Sum_probs=108.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|||||+||+||++....|++.++++|+|||++..++|+-+.+|+..+..+....+..++|+||+|+.+.++++.+....+
T Consensus 59 qiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeef 138 (213)
T KOG0095|consen 59 QIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEF 138 (213)
T ss_pred EEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999887888999999999988889988888989
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 119 (144)
.+...+.++++||+...|++.+|..++..+.........
T Consensus 139 s~~qdmyfletsakea~nve~lf~~~a~rli~~ar~~d~ 177 (213)
T KOG0095|consen 139 SEAQDMYFLETSAKEADNVEKLFLDLACRLISEARQNDL 177 (213)
T ss_pred HHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 988888999999999999999999999888755444433
No 41
>PLN03118 Rab family protein; Provisional
Probab=99.92 E-value=7.6e-24 Score=147.14 Aligned_cols=115 Identities=50% Similarity=0.785 Sum_probs=98.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
+||||||+++|..++..+++++|++|+|||++++.+|..+.. |...+..... ...|+++|+||.|+.....+..++..
T Consensus 65 ~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~ 144 (211)
T PLN03118 65 TIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM 144 (211)
T ss_pred EEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH
Confidence 489999999999999999999999999999999999999976 4444543332 35799999999999766666677777
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
.++...+++++++||+++.|++++|++|...+.....
T Consensus 145 ~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~~ 181 (211)
T PLN03118 145 ALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPS 181 (211)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 7888888999999999999999999999999876543
No 42
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=1.9e-24 Score=146.68 Aligned_cols=110 Identities=31% Similarity=0.572 Sum_probs=97.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC-----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA----------- 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~----------- 68 (144)
+||||+|+++|..+++.++.++|++|+|||++++.||+.+ ..|+..+....+ ..|+++||||.||.+
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~ 130 (178)
T cd04131 52 SLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQ 130 (178)
T ss_pred EEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhc
Confidence 5899999999999999999999999999999999999996 789998887764 689999999999853
Q ss_pred -CcccCHHHHHHHHHHcCC-cEEEeecCCCCC-HHHHHHHHHHHHH
Q 032243 69 -NKVVSYETAKAFADEIGI-PFMETSAKDSTN-VEQAFMAMAASIK 111 (144)
Q Consensus 69 -~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~l~~~i~~~~~ 111 (144)
...++.+++.++++..++ +++++||++|++ ++++|..++.+..
T Consensus 131 ~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 131 RQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 235778899999999997 899999999995 9999999988643
No 43
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=2.8e-24 Score=146.98 Aligned_cols=110 Identities=36% Similarity=0.596 Sum_probs=94.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK--------- 70 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------- 70 (144)
+||||+|+++|..++..++.++|++++|||++++.+|+.+. .|+..+.... ...|+++|+||.|+....
T Consensus 51 ~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~ 129 (189)
T cd04134 51 SLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRY 129 (189)
T ss_pred EEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhc
Confidence 58999999999999999999999999999999999999886 5888887654 368999999999996433
Q ss_pred ---ccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 71 ---VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 71 ---~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.+...+...++...+ ++++++||++|.|++++|+++++.+.
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 130 GKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 234556677777776 68999999999999999999999886
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.92 E-value=6e-24 Score=142.49 Aligned_cols=112 Identities=58% Similarity=1.010 Sum_probs=101.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|..++..+++++|++++|||++++.+|..+..|+..+........|+++++||.|+.....+..+++..+
T Consensus 55 ~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 134 (167)
T cd01867 55 QIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEAL 134 (167)
T ss_pred EEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999876656789999999999976666677788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+...+.+++++||++|.|++++|+++.+.+..
T Consensus 135 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 135 ADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 88888999999999999999999999998753
No 45
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=6e-24 Score=144.82 Aligned_cols=114 Identities=31% Similarity=0.538 Sum_probs=97.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc----ccCHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK----VVSYE 75 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~~ 75 (144)
+||||+|+++|..+++.+++++|++++|||++++.+|+++. .|+..+.... .+.|+++++||.|+.... .+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~ 130 (187)
T cd04132 52 ALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPA 130 (187)
T ss_pred EEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHH
Confidence 58999999999999999999999999999999999999986 4777776544 368999999999985432 35577
Q ss_pred HHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 76 TAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 76 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
++.+++...++ +++++||++|.|++++|+.+++.+.....
T Consensus 131 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 131 QAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 88888888887 99999999999999999999999875433
No 46
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.92 E-value=1.3e-23 Score=143.92 Aligned_cols=137 Identities=33% Similarity=0.608 Sum_probs=107.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----cccCHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN----KVVSYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----~~~~~~~ 76 (144)
+||||+|++++..++..++.++|++++|||++++.+|+.+..|+..+.... ...|+++|+||.|+... ..+...+
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~ 131 (193)
T cd04118 53 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHD 131 (193)
T ss_pred EEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHH
Confidence 489999999999999999999999999999999999999988998887654 36899999999998532 2344556
Q ss_pred HHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCc
Q 032243 77 AKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 142 (144)
Q Consensus 77 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 142 (144)
+..++...+++++++||++|.|++++|+++++.+......+..+.+... ...+..++.++||
T Consensus 132 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 193 (193)
T cd04118 132 VQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTEKGVD----LGQKKNSYFYSCC 193 (193)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcccccCCCCccc----cCCcCCCCCCCCC
Confidence 7777777888999999999999999999999998765444433321111 1222335777788
No 47
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.92 E-value=9.9e-24 Score=147.42 Aligned_cols=114 Identities=24% Similarity=0.503 Sum_probs=96.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||+|+++|..+++.++.++|++|+|||++++.+|+.+. .|...+.... ...|++||+||.|+...
T Consensus 52 ~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~ 130 (222)
T cd04173 52 NMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQ 130 (222)
T ss_pred EEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhc
Confidence 48999999999999999999999999999999999999995 4665554443 46899999999999542
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCC-HHHHHHHHHHHHHHhhc
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTN-VEQAFMAMAASIKDRMA 115 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~l~~~i~~~~~~~~~ 115 (144)
..++.+++..+++..+. +|+++||+++.+ ++++|+.+..+...+..
T Consensus 131 ~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 131 RLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred cCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence 13667888999999995 899999999884 99999999998766443
No 48
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=6e-24 Score=142.16 Aligned_cols=111 Identities=83% Similarity=1.263 Sum_probs=101.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|..++..+++++|++++|||++++.+|..+..|+..+........|+++++||.|+.....+..+++..+
T Consensus 54 ~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~ 133 (166)
T cd01869 54 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEF 133 (166)
T ss_pred EEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999998776645689999999999976666777888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+...+++++++||++|.|++++|+.+.+.+.
T Consensus 134 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 134 ADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred HHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 8888999999999999999999999998775
No 49
>PLN03108 Rab family protein; Provisional
Probab=99.92 E-value=2.2e-23 Score=144.77 Aligned_cols=114 Identities=50% Similarity=0.868 Sum_probs=102.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|..++..++.++|++++|||++++.+|..+..|+..+........|+++++||.|+...+.++..+..++
T Consensus 58 ~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~ 137 (210)
T PLN03108 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137 (210)
T ss_pred EEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999888766555799999999999976667778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
++..+++++++||+++.|++++|+++++.+....
T Consensus 138 ~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 138 AKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9889999999999999999999999999887543
No 50
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.92 E-value=9.6e-24 Score=145.52 Aligned_cols=110 Identities=31% Similarity=0.584 Sum_probs=96.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..|++++|++|+|||+++..+|..+..|+..+.... ..+|+++|+||.|+.. +.+..+. ..+
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~ 123 (200)
T smart00176 47 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITF 123 (200)
T ss_pred EEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHH
Confidence 489999999999999999999999999999999999999999999997765 3699999999999854 3444443 457
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+...++.++++||++|.|++++|++|+..+...
T Consensus 124 ~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 124 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 777889999999999999999999999988653
No 51
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.92 E-value=8.1e-24 Score=141.25 Aligned_cols=110 Identities=36% Similarity=0.643 Sum_probs=98.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..++.++|++++|||+++..+|+.+..|+..+.... ..+.|+++++||.|+.....++..+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 131 (164)
T cd04175 52 EILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 131 (164)
T ss_pred EEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH
Confidence 489999999999999999999999999999999999999999988886653 3478999999999997666666677777
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+++..+++++++||++|.|++++|.++...+
T Consensus 132 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 132 LARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 8888889999999999999999999998765
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=7.8e-24 Score=140.88 Aligned_cols=110 Identities=41% Similarity=0.681 Sum_probs=97.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..+++++|++++|||++++.+|+.+..|+..+..... ...|+++++||.|+.+.+.+...+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 131 (163)
T cd04136 52 EILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQA 131 (163)
T ss_pred EEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHH
Confidence 4799999999999999999999999999999999999999999988876543 468999999999997666666667777
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+++.++.+++++||++|.|++++|+++.+.+
T Consensus 132 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 132 LARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 8877788999999999999999999998754
No 53
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.91 E-value=9.5e-24 Score=140.73 Aligned_cols=110 Identities=37% Similarity=0.628 Sum_probs=96.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..++.++|++++|||++++.+|.++..|+..+..... .+.|+++++||.|+.....+...+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~ 131 (163)
T cd04176 52 EILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRA 131 (163)
T ss_pred EEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHH
Confidence 4899999999999999999999999999999999999999999888866532 478999999999986655666667777
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
++...+++++++||++|.|+.++|.++++.+
T Consensus 132 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 132 LAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 7777888999999999999999999998754
No 54
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.91 E-value=2.8e-23 Score=139.43 Aligned_cols=112 Identities=52% Similarity=0.911 Sum_probs=101.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..+++++|+++||||++++.+|..+..|+..+.....+..|+++|+||.|+.+...+...++..+
T Consensus 56 ~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~ 135 (168)
T cd01866 56 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAF 135 (168)
T ss_pred EEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999877656799999999999976666777788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+...+++++++||+++.|++++|.++.+.+.+
T Consensus 136 ~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 136 AKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 88889999999999999999999999988754
No 55
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.91 E-value=9.7e-24 Score=142.76 Aligned_cols=109 Identities=28% Similarity=0.468 Sum_probs=94.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||+|+++|..++..++.++|++|+|||++++.+|+.+. .|+..+.... ...|+++|+||.|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~ 130 (175)
T cd01874 52 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKN 130 (175)
T ss_pred EEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhc
Confidence 58999999999999999999999999999999999999996 4887776654 36899999999998543
Q ss_pred --cccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+.++.+++.++++..+ +.++++||++|.|++++|+.++...
T Consensus 131 ~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 131 KQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred cCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 4566777888888877 6899999999999999999998753
No 56
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=8.2e-24 Score=145.42 Aligned_cols=106 Identities=30% Similarity=0.509 Sum_probs=92.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC-----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA----------- 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~----------- 68 (144)
+||||+|+++ .+.+.++.++|++++|||++++.+|+.+. .|+..+.... ...|+++|+||.||..
T Consensus 69 ~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 69 RLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred EEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhccc
Confidence 5899999986 34567899999999999999999999997 5888887665 3689999999999853
Q ss_pred --------CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 69 --------NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 69 --------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.+.++.+++..+++..+++++++||++|.|++++|+.++++
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 35678889999999999999999999999999999998864
No 57
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.91 E-value=4.3e-23 Score=137.81 Aligned_cols=110 Identities=53% Similarity=0.872 Sum_probs=99.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|..+++.++++++++++|||++++.+|..+..|+..+........|+++|+||.|+...+.+..++...+
T Consensus 55 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~ 134 (165)
T cd01868 55 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAF 134 (165)
T ss_pred EEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999998877655689999999999976666667788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+...+++++++||++|.|++++|+++...+
T Consensus 135 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 135 AEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 887888999999999999999999998764
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.91 E-value=4e-23 Score=137.76 Aligned_cols=111 Identities=30% Similarity=0.610 Sum_probs=99.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCcccCHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-----DNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
++|||+|+++|..++..++.++|++|+|||++++.+|..+..|+..+..... ...|+++|+||.|+.....+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 131 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSED 131 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHH
Confidence 5899999999999999999999999999999999999999999999877643 36899999999999655566677
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+...++...+++++++||++|.|++++|++|.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 132 EGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 777788888899999999999999999999998764
No 59
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.91 E-value=2.5e-23 Score=140.60 Aligned_cols=108 Identities=30% Similarity=0.532 Sum_probs=94.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||+|+++|..+++.++.++|++|+|||++++++|.++. .|+..+.... .+.|+++|+||.|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~ 130 (174)
T cd01871 52 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEK 130 (174)
T ss_pred EEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhc
Confidence 48999999999999999999999999999999999999996 5777776554 36999999999998542
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
..++.+++..+++..+. +++++||++|.|++++|+.++..
T Consensus 131 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 131 KLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 24677888889988884 99999999999999999998864
No 60
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=5.6e-23 Score=137.40 Aligned_cols=109 Identities=53% Similarity=0.920 Sum_probs=98.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++++|||++++.+|..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus 55 ~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 134 (165)
T cd01864 55 QIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTL 134 (165)
T ss_pred EEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999776556789999999999976666667788888
Q ss_pred HHHcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243 81 ADEIGI-PFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 81 ~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
++..+. .++++||++|.|++++|+++.+.
T Consensus 135 ~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 135 AEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 888775 78999999999999999999865
No 61
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.91 E-value=6.2e-23 Score=136.51 Aligned_cols=108 Identities=40% Similarity=0.710 Sum_probs=97.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..+++++|++++|||++++.+|..+..|+..+.... ...|+++++||.|+..+..+..+++..+
T Consensus 54 ~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~ 132 (162)
T cd04106 54 MLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEAL 132 (162)
T ss_pred EEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHH
Confidence 589999999999999999999999999999999999999999998886544 3689999999999977667777788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
++..+++++++||++|.|++++|++|...
T Consensus 133 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 133 AKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 88899999999999999999999998753
No 62
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.91 E-value=5.2e-23 Score=136.89 Aligned_cols=109 Identities=50% Similarity=0.825 Sum_probs=99.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..+++.+++++|++++|||+++..+|..+..|+..+.....++.|+++++||.|+.....+..+++..+
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 131 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRF 131 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999988776666799999999999976666778888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+...+++++++||+++.|++++|+++++.
T Consensus 132 ~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 132 AQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 88889999999999999999999999864
No 63
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.90 E-value=3.8e-23 Score=137.61 Aligned_cols=111 Identities=46% Similarity=0.866 Sum_probs=104.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+|||++|+++|..++..++.++|++|+|||++++.||+.+..|+..+........|++|++||.|+...+.++.+++..+
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~ 130 (162)
T PF00071_consen 51 EIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEF 130 (162)
T ss_dssp EEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHH
Confidence 48999999999999999999999999999999999999999999999988876689999999999977778888999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
++.++.+++++||+++.|+.++|..+++.+.
T Consensus 131 ~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 131 AKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred HHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999998774
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.90 E-value=5.1e-23 Score=137.72 Aligned_cols=109 Identities=32% Similarity=0.461 Sum_probs=95.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
++|||+|+++|..++..++.++|++++|||+++..+|+.+..|+..+..... ...|+++|+||.|+.....+...++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 131 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG 131 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH
Confidence 4899999999999999999999999999999999999999998887765432 4689999999999976566667777
Q ss_pred HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
..++...+++++++||++|.|++++|++|+..
T Consensus 132 ~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 132 AACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred HHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 77887888899999999999999999999764
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.90 E-value=6.8e-23 Score=136.45 Aligned_cols=110 Identities=40% Similarity=0.639 Sum_probs=97.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+++|..+++.++.++|++++|||+++..+|+.+..|+..+.... ....|+++++||+|+.....+...+...
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~ 132 (164)
T cd04145 53 DILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQE 132 (164)
T ss_pred EEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHH
Confidence 479999999999999999999999999999999999999999988886643 2468999999999997666666667778
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+++..+++++++||++|.|++++|++|+..+
T Consensus 133 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 133 LARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 8888889999999999999999999998765
No 66
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.90 E-value=1.1e-22 Score=135.65 Aligned_cols=109 Identities=33% Similarity=0.592 Sum_probs=96.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|++++..+++.+++++|++++|||++++.+|..+..|+..+.... ...|+++|+||.|+.+...+.......+
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 133 (164)
T cd04101 55 FIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAF 133 (164)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHH
Confidence 489999999999999999999999999999999999999999998887665 3589999999999976666666666667
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
....+.+++++||+++.|++++|+.+++.+
T Consensus 134 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 134 AQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 777788999999999999999999998865
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.90 E-value=1e-22 Score=135.73 Aligned_cols=111 Identities=43% Similarity=0.741 Sum_probs=98.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+++|..+++.++.++|++++|||++++.+|+.+..|...+..... ...|+++++||+|+...+.+....+..
T Consensus 51 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~ 130 (164)
T smart00173 51 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKE 130 (164)
T ss_pred EEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHH
Confidence 4899999999999999999999999999999999999999998888765433 368999999999997666666777778
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+++..+.+++++||++|.|++++|++|++.+.
T Consensus 131 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 131 LARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 88888899999999999999999999998764
No 68
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.90 E-value=1.8e-22 Score=135.89 Aligned_cols=112 Identities=39% Similarity=0.616 Sum_probs=95.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcc--cCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKV--VSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~--~~~~~~ 77 (144)
+||||+|+++|..++..+++++|++++|||++++.+|..+..|+..+.... +...|+++|+||.|+.+... ...+++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~ 131 (170)
T cd04108 52 QLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDA 131 (170)
T ss_pred EEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHH
Confidence 589999999999999999999999999999999999999999999886543 34578999999999854433 235566
Q ss_pred HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
..+++.++.+++++||++|.|++++|+.|+..+.+
T Consensus 132 ~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 132 IKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67777788899999999999999999999998853
No 69
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=7.6e-23 Score=142.97 Aligned_cols=110 Identities=32% Similarity=0.595 Sum_probs=95.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..|+.++|++|+|||++++.+|..+..|+..+.... ...|+++||||.|+.. ..+..+.. .+
T Consensus 65 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~ 141 (219)
T PLN03071 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TF 141 (219)
T ss_pred EEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HH
Confidence 489999999999999999999999999999999999999999999997665 3699999999999853 33444444 66
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
....+++++++||++|.|++++|++|+..+...
T Consensus 142 ~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 142 HRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred HHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 777788999999999999999999999988643
No 70
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.90 E-value=2.4e-22 Score=133.69 Aligned_cols=112 Identities=60% Similarity=0.949 Sum_probs=101.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||||+++|..++..++..+|++++|||++++.+++.+..|+..+..+.....|+++++||.|+.....+..+.+..+
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~ 131 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF 131 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999998877655799999999999876566667778888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
++..+++++++||++|.|++++|++|.+.+..
T Consensus 132 ~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 132 AEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 88888999999999999999999999988753
No 71
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.90 E-value=1.8e-22 Score=133.92 Aligned_cols=109 Identities=38% Similarity=0.681 Sum_probs=95.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+++|..++..|++++|++++|||+++..+|..+..|+..+..... ...|+++|+||.|+.. +.....+...
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~ 130 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQD 130 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHH
Confidence 4799999999999999999999999999999999999999988888876543 4689999999999865 4455667777
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+++..+++++++||++|.|++++|+++++.+
T Consensus 131 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 131 LAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 8888889999999999999999999998654
No 72
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.90 E-value=8.2e-23 Score=137.52 Aligned_cols=110 Identities=34% Similarity=0.583 Sum_probs=96.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK--------- 70 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------- 70 (144)
++|||+|+++|..++..++.++|++|+|||++++.+|+.+. .|+..+.... ...|+++|+||.|+....
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 127 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQ 127 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcc
Confidence 58999999999999999999999999999999999999986 5888887655 369999999999986422
Q ss_pred ---ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 71 ---VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 71 ---~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.++.+++..+++..+. +++++||++|.|++++|+.+++.+.
T Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 128 KQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred cCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 2566777888888886 9999999999999999999998875
No 73
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.89 E-value=2.9e-22 Score=133.12 Aligned_cols=109 Identities=40% Similarity=0.704 Sum_probs=98.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||||+.++..++..++.++|++++|||++++.+|..+..|+..+......+.|+++++||.|+........++...+
T Consensus 52 ~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~ 131 (161)
T cd01861 52 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKK 131 (161)
T ss_pred EEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999988776555699999999999966666667778888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
++..+++++++||+++.|++++++++.+.
T Consensus 132 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 132 AKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 88888999999999999999999999765
No 74
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.89 E-value=3.4e-22 Score=133.29 Aligned_cols=109 Identities=37% Similarity=0.620 Sum_probs=93.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|..+++.+++++|++++|||++++.++..+..|+..+.... ...|+++++||.|+... . ..+...+
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~--~-~~~~~~~ 127 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS--V-TQKKFNF 127 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh--H-HHHHHHH
Confidence 489999999999999999999999999999999999999999999887654 35899999999998421 1 3344556
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
++..+++++++||++|.|++++|+.++..+...
T Consensus 128 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 128 AEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 666788999999999999999999999887653
No 75
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.89 E-value=2.9e-22 Score=134.40 Aligned_cols=109 Identities=33% Similarity=0.613 Sum_probs=94.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|++++..++..++..+|++|+|||+++..+|..+..|+..+..... ..|+++|+||.|+.. ..+. .+..++
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~ 128 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITF 128 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHH
Confidence 4899999999999999999999999999999999999999999999977664 699999999999863 3333 334456
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.+..+++++++||++|.|++++|++|++.+.+
T Consensus 129 ~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 129 HRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 66667899999999999999999999988864
No 76
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.89 E-value=4.3e-22 Score=133.61 Aligned_cols=108 Identities=42% Similarity=0.735 Sum_probs=94.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccCHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~ 76 (144)
+||||+|+++|..++..+++++|++++|||++++.+|+.+..|...+..... ...|+++++||.|+. .+.+..++
T Consensus 57 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~ 135 (170)
T cd04116 57 QIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEE 135 (170)
T ss_pred EEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHH
Confidence 4899999999999999999999999999999999999999999888765432 368999999999985 45566778
Q ss_pred HHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHH
Q 032243 77 AKAFADEIG-IPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 77 ~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+.++++..+ .+++++||++|.|+.++|+.+++.
T Consensus 136 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 136 AQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 888888887 489999999999999999998864
No 77
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.89 E-value=8.7e-22 Score=131.07 Aligned_cols=110 Identities=49% Similarity=0.818 Sum_probs=99.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|++++..++..++.++|++++|+|++++.++.....|+..+........|+++++||.|+......+..+...+
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 132 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEY 132 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999998777656789999999999876666667788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
....+++++++||++|.|+.++|++++..+
T Consensus 133 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 133 ADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 888889999999999999999999998875
No 78
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=7.3e-22 Score=135.94 Aligned_cols=142 Identities=25% Similarity=0.353 Sum_probs=108.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CcccCHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA-NKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~ 78 (144)
+||||+|+.+|..+++.++.++|+++||||++++.+|+.+..|+..+..... ..+|+++|+||.|+.. ...+......
T Consensus 50 ~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~ 129 (198)
T cd04147 50 DILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDAL 129 (198)
T ss_pred EEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHH
Confidence 4899999999999999999999999999999999999999999888876644 4699999999999865 3444444444
Q ss_pred HHHH-HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCC--CCCCCCCCccccCCCCCCCCCCCc
Q 032243 79 AFAD-EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP--SMNNARPPTVQIKGQPVAQKSGCC 142 (144)
Q Consensus 79 ~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~c~ 142 (144)
+... ..+.+++++||++|.|++++|++++..+.......+ ......-+.+.+++.+..+...|.
T Consensus 130 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (198)
T cd04147 130 STVELDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSPALRRRRESLPSEIQRRPPMNKTNSCS 196 (198)
T ss_pred HHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccchhhHHHHhhccHhhhcCCCCCCCCccc
Confidence 3333 345789999999999999999999998764333333 122222344466666777777775
No 79
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.89 E-value=7.4e-22 Score=132.71 Aligned_cols=110 Identities=45% Similarity=0.829 Sum_probs=97.6
Q ss_pred CceeccchhHHh-hhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
++|||+|+++|. .++..+++++|++++|||++++.+|..+..|+..+..... ..+|+++|+||.|+.....+...+..
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 133 (170)
T cd04115 54 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQ 133 (170)
T ss_pred EEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHH
Confidence 489999999997 5789999999999999999999999999999988876542 46999999999999776777777888
Q ss_pred HHHHHcCCcEEEeecCC---CCCHHHHHHHHHHHH
Q 032243 79 AFADEIGIPFMETSAKD---STNVEQAFMAMAASI 110 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~---~~~i~~l~~~i~~~~ 110 (144)
.+++..+++++++||++ +.+++++|..++..+
T Consensus 134 ~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 134 RFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 88888889999999999 899999999998765
No 80
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.88 E-value=1.5e-21 Score=129.43 Aligned_cols=110 Identities=42% Similarity=0.797 Sum_probs=98.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|++++..+++.++.++|++++|||+++..++..+..|+..+........|+++++||.|+.....+..++...+
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~ 131 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEY 131 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999988777655789999999999976666667777778
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
....+.+++++|++++.|++++++++.+.+
T Consensus 132 ~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 132 AKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 888889999999999999999999998764
No 81
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.88 E-value=1.3e-21 Score=131.25 Aligned_cols=111 Identities=37% Similarity=0.621 Sum_probs=97.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+++|..+++.+++.++++++|||.+++.+++.+..|...+.... ..+.|+++++||.|+...+.+..++...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~ 131 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS 131 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH
Confidence 489999999999999999999999999999999999999998888886543 3469999999999997666666777777
Q ss_pred HHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FADEIG-IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+++..+ .+++++||++|.|++++|++++..+.
T Consensus 132 ~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 132 LSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred HHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 777777 79999999999999999999987654
No 82
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.88 E-value=6.9e-22 Score=131.68 Aligned_cols=104 Identities=20% Similarity=0.407 Sum_probs=88.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~--~~~~~~~~~~ 77 (144)
+||||+|+++ ..+++++|++++|||++++.+|..+..|+..+..... ...|+++|+||.|+. ..+.+...++
T Consensus 50 ~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~ 124 (158)
T cd04103 50 LIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA 124 (158)
T ss_pred EEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH
Confidence 5899999975 3467889999999999999999999999999977653 468999999999984 3466777788
Q ss_pred HHHHHHc-CCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 78 KAFADEI-GIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 78 ~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.++++.. ++.++++||++|.|++++|+.+++.
T Consensus 125 ~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 125 RQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 8888776 4899999999999999999998754
No 83
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.88 E-value=1.5e-21 Score=138.57 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=95.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---------ASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
+||||+|+++|..++..++.++|++|+|||+++..+|+.+..|+..+... ...+.|+++|+||+|+.....
T Consensus 51 ~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~ 130 (247)
T cd04143 51 DILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE 130 (247)
T ss_pred EEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc
Confidence 48999999999999999999999999999999999999999998888653 223689999999999976556
Q ss_pred cCHHHHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 72 VSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 72 ~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+..+++.+++.. .++.++++||++|.|++++|++|+.....
T Consensus 131 v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 131 VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred cCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 667777666653 35789999999999999999999987753
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.88 E-value=1.1e-21 Score=131.14 Aligned_cols=111 Identities=32% Similarity=0.469 Sum_probs=95.3
Q ss_pred CceeccchhH-HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
+||||+|+++ +...+..++.++|++++|||+++..+|+.+..|+..+.... ....|+++|+||+|+...+.+..+++
T Consensus 50 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 129 (165)
T cd04146 50 EILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEG 129 (165)
T ss_pred EEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHH
Confidence 5899999986 35567788999999999999999999999999988887654 34699999999999866666777788
Q ss_pred HHHHHHcCCcEEEeecCCCC-CHHHHHHHHHHHHH
Q 032243 78 KAFADEIGIPFMETSAKDST-NVEQAFMAMAASIK 111 (144)
Q Consensus 78 ~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~i~~~~~ 111 (144)
..+++..+.+++++||++|. |++++|+.+++.+.
T Consensus 130 ~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 130 EKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred HHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 88888888999999999994 99999999988653
No 85
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=1.2e-21 Score=133.17 Aligned_cols=110 Identities=18% Similarity=0.288 Sum_probs=85.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+++++.+|..|+.++|++|||||+++++++..+..++..+... ...+.|++|++||.|+... ...++...
T Consensus 64 ~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~ 141 (181)
T PLN00223 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITD 141 (181)
T ss_pred EEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHH
Confidence 58999999999999999999999999999999999999887777766432 2236899999999998643 22333332
Q ss_pred HHHHc-----CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FADEI-----GIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~~-----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
..... .+.++++||++|+|+.++|++|++.+..
T Consensus 142 ~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 142 KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred HhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 22111 1246689999999999999999988764
No 86
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.88 E-value=8.6e-22 Score=132.41 Aligned_cols=106 Identities=21% Similarity=0.333 Sum_probs=85.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+++|..+|+.++.++|++|||||++++.+|..+..|+..+... .....|++||+||.|+... +..+++..
T Consensus 56 ~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~ 133 (168)
T cd04149 56 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQE 133 (168)
T ss_pred EEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHH
Confidence 58999999999999999999999999999999999999988877766543 2246899999999998532 34555555
Q ss_pred HHHH-----cCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FADE-----IGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~~~-----~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
.... ..++++++||++|.|++++|++|.+
T Consensus 134 ~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 134 KLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 4321 2247899999999999999999864
No 87
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.87 E-value=1.7e-21 Score=131.33 Aligned_cols=107 Identities=31% Similarity=0.535 Sum_probs=92.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC-----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA----------- 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~----------- 68 (144)
++|||+|+++|..++..+++++|++++|||++++.+|+.+. .|+..+.... ...|+++++||.|+..
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 129 (173)
T cd04130 51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARY 129 (173)
T ss_pred EEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhc
Confidence 48999999999999999999999999999999999999885 5887776543 3589999999999853
Q ss_pred -CcccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHH
Q 032243 69 -NKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 69 -~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
.+.+..+++..+++..+. +++++||++|.|++++|+.++.
T Consensus 130 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 130 GEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 345667788888888887 8999999999999999998764
No 88
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.87 E-value=7.3e-22 Score=133.52 Aligned_cols=108 Identities=19% Similarity=0.322 Sum_probs=84.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..+|..|++++|++|||||++++.++++...|+..+.... ....|++||+||.|+.... ...+...
T Consensus 60 ~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~ 137 (175)
T smart00177 60 TVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITE 137 (175)
T ss_pred EEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHH
Confidence 489999999999999999999999999999999999999888887775432 2368999999999985422 2233222
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
... ...+.++++||++|.|++++|++|...+
T Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 138 KLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 211 1123577899999999999999998765
No 89
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.86 E-value=8.5e-22 Score=131.28 Aligned_cols=106 Identities=20% Similarity=0.316 Sum_probs=82.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+++|..+|..++.++|+++||||++++.+|+.+..|+..+... .....|+++++||.|+.+. ....+...
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~ 124 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTD 124 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHH
Confidence 48999999999999999999999999999999999999988877776432 2235899999999998542 22223222
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
... ...+.++++||++|.|++++|++|.+
T Consensus 125 ~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 125 KLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 211 11245789999999999999999864
No 90
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=1.3e-20 Score=126.13 Aligned_cols=110 Identities=49% Similarity=0.845 Sum_probs=96.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|...+..++..+|++++|||+++..++..+..|+..+........|+++++||.|+.....+.......+
T Consensus 59 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~ 138 (169)
T cd04114 59 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEF 138 (169)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 47999999999999999999999999999999999999998998888776655789999999999976666666666667
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.+....+++++||++|.|+.++|+.+.+.+
T Consensus 139 ~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 139 SDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 766678899999999999999999998764
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.86 E-value=1.6e-20 Score=124.82 Aligned_cols=111 Identities=43% Similarity=0.689 Sum_probs=97.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+.++..++..+++++|++++|+|++++.+|..+..|+..+..... ...|+++++||+|+.............
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~ 130 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN 130 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH
Confidence 4899999999999999999999999999999999999999998888876632 479999999999996644455666777
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+...++.+++++||++|.|++++|+.+.+.+.
T Consensus 131 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 131 LARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 77788899999999999999999999988765
No 92
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.86 E-value=7.7e-22 Score=132.12 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=87.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH----HH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY----ET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~ 76 (144)
++|||||+++|..+|+.+++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||.|+.....+.. ..
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~ 125 (164)
T cd04162 47 ELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELE 125 (164)
T ss_pred EEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhC
Confidence 489999999999999999999999999999999999999888888876543 4699999999999865443221 12
Q ss_pred HHHHHHHcCCcEEEeecCC------CCCHHHHHHHHHH
Q 032243 77 AKAFADEIGIPFMETSAKD------STNVEQAFMAMAA 108 (144)
Q Consensus 77 ~~~~~~~~~~~~~~~Sa~~------~~~i~~l~~~i~~ 108 (144)
+..+++..++.++++||++ ++|++++|+.++.
T Consensus 126 ~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 126 LEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 3344455578899999888 9999999998764
No 93
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.86 E-value=1.9e-20 Score=125.52 Aligned_cols=113 Identities=42% Similarity=0.723 Sum_probs=97.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccCHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~ 76 (144)
++|||||++.|..++..+++++|++|+|||++++.++..+..|...+..... ...|+++|+||+|+..+.....++
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 131 (172)
T cd01862 52 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK 131 (172)
T ss_pred EEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH
Confidence 4899999999999999999999999999999999999988888777655432 368999999999997555556777
Q ss_pred HHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 77 AKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 77 ~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
...+.+..+ .+++++||++|.|++++|+++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 132 AQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 777777777 7999999999999999999999988754
No 94
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.86 E-value=5.3e-21 Score=128.53 Aligned_cols=110 Identities=15% Similarity=0.259 Sum_probs=89.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+.++..+|..++.++|+++||+|++++.++.++..|+..+.... ....|+++++||.|+.. .+..+++..
T Consensus 46 ~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~ 123 (169)
T cd04158 46 TIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTE 123 (169)
T ss_pred EEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHH
Confidence 489999999999999999999999999999999999999988888886432 23589999999999853 244555555
Q ss_pred HHHHcC------CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FADEIG------IPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~~~------~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
++...+ +.++++||++|.|++++|++|.+.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 124 LLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred HhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 543222 367899999999999999999887653
No 95
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.86 E-value=1.5e-20 Score=131.50 Aligned_cols=114 Identities=29% Similarity=0.388 Sum_probs=95.5
Q ss_pred CceeccchhHHhhhhhhhhc-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYR-GAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
+||||+|++.+ ....++. ++|++++|||++++.+|+.+..|+..+..... ...|+++|+||.|+.....+..++..
T Consensus 53 ~i~Dt~G~~~~--~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~ 130 (221)
T cd04148 53 VVIDHWEQEMW--TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR 130 (221)
T ss_pred EEEeCCCcchH--HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH
Confidence 48999999833 3345566 89999999999999999999999988876542 46999999999999776677777777
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
.++...+++++++||++|.|++++|++++..+......
T Consensus 131 ~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~ 168 (221)
T cd04148 131 ACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDS 168 (221)
T ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 88888889999999999999999999999998754433
No 96
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.86 E-value=7.6e-21 Score=131.01 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=90.1
Q ss_pred CceeccchhHH--------hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERF--------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~ 69 (144)
+||||+|..+| ......++.++|+++||||++++.+|+.+..|+..+.... ...+|+++|+||.|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 48999986543 2223455789999999999999999999999988887653 356999999999999665
Q ss_pred cccCHHHHHHHHH-HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 70 KVVSYETAKAFAD-EIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 70 ~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+.+..++...++. ..+++++++||++|.|++++|+.++..+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 132 RFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred ccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 5555666665554 457899999999999999999999988764
No 97
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.86 E-value=3.4e-21 Score=130.61 Aligned_cols=112 Identities=34% Similarity=0.579 Sum_probs=99.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
.+|||+||++|++++...|.++|+++++|++.++.||+++. .|+..+.++++ ..|+++||+|.||.+.
T Consensus 56 ~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~ 134 (198)
T KOG0393|consen 56 GLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQ 134 (198)
T ss_pred eeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhc
Confidence 38999999999998888899999999999999999999984 59999999884 6999999999999742
Q ss_pred --cccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 70 --KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
..+..+++..+++..| ..++++||+++.|++++|+..+......
T Consensus 135 ~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 135 GLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred cCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence 3567788899999999 5899999999999999999999888753
No 98
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.86 E-value=1.6e-20 Score=124.85 Aligned_cols=108 Identities=50% Similarity=0.869 Sum_probs=95.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+++|..++..+++++|++++|||++++.+|..+..|+..+..... ...|+++++||.|+.. ......+...
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~ 130 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLK 130 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHH
Confidence 4899999999999999999999999999999999999999999988876643 4789999999999863 3445677778
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
++...+++++++||++|.|++++++.+...
T Consensus 131 ~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 131 FARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 888888999999999999999999998765
No 99
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.86 E-value=7.9e-21 Score=127.86 Aligned_cols=109 Identities=34% Similarity=0.548 Sum_probs=93.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
++|||+|+++|..++..++.++|++++|||++++.+|+.+. .|+..+... ....|+++++||.|+.+.
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~ 129 (174)
T cd04135 51 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDM 129 (174)
T ss_pred EEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhc
Confidence 48999999999999999999999999999999999999886 577777655 457999999999998542
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
..++.+++..+++..+. +++++||++|.|++++|+.++..+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 130 KEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 24556777888888886 799999999999999999998765
No 100
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.86 E-value=2.9e-20 Score=127.62 Aligned_cols=115 Identities=41% Similarity=0.608 Sum_probs=104.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+|+||+|+++|..+...++.+.|++++||+++++.||+.+..++..+..... ..+|+++||||+|+...+.++.+++..
T Consensus 54 ~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~ 133 (196)
T KOG0395|consen 54 EILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKA 133 (196)
T ss_pred EEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHH
Confidence 3799999999999999999999999999999999999999999998844333 468999999999998878999999999
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
++..++++++++||+.+.+++++|..+...+.....
T Consensus 134 la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~ 169 (196)
T KOG0395|consen 134 LARSWGCAFIETSAKLNYNVDEVFYELVREIRLPRE 169 (196)
T ss_pred HHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999876333
No 101
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.85 E-value=5.9e-20 Score=124.32 Aligned_cols=112 Identities=38% Similarity=0.588 Sum_probs=97.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+++|..++..++..+|++++|||+++..+++.+..|+..+.... ....|+++++||+|+...+.+...+...
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~ 131 (180)
T cd04137 52 EIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE 131 (180)
T ss_pred EEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH
Confidence 489999999999999999999999999999999999999999888886653 2468999999999997655565666677
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+....+.+++++||+++.|+.++|+++.+.+..
T Consensus 132 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 132 LAESWGAAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 777788899999999999999999999998864
No 102
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.85 E-value=3e-20 Score=122.26 Aligned_cols=107 Identities=57% Similarity=0.955 Sum_probs=96.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++||+||+.++...+..+++++|++++|+|++++.++..+..|+..+........|+++++||.|+........++...+
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 131 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQF 131 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHH
Confidence 48999999999999999999999999999999999999999999999887655689999999999964555567788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMA 107 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 107 (144)
....+.+++++||+++.|+++++++|.
T Consensus 132 ~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 132 AKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 888889999999999999999999885
No 103
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=5.8e-21 Score=128.44 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=90.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++||++|++++..++..+++++|++++|||++++.+|+.+..|+..+... ...|+++|+||.|+.+.......+...+
T Consensus 57 ~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 134 (169)
T cd01892 57 ILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEF 134 (169)
T ss_pred EEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHH
Confidence 48999999999999999999999999999999999999988888765332 2589999999999865443333345566
Q ss_pred HHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
++..++ .++++||++|.|++++|+.+++.+.
T Consensus 135 ~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 135 CRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred HHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 777776 4699999999999999999998875
No 104
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.85 E-value=4.8e-20 Score=121.98 Aligned_cols=109 Identities=43% Similarity=0.711 Sum_probs=97.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++||++|++++..++..+++++|++++|||++++.++.++..|+..+..... ...|+++++||+|+.....+..+++..
T Consensus 50 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 129 (160)
T cd00876 50 DILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKA 129 (160)
T ss_pred EEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHH
Confidence 4899999999999999999999999999999999999999999888877655 479999999999997656666778888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+....+.+++++||+++.|++++|++|.+.
T Consensus 130 ~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 130 LAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 888888999999999999999999999865
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.85 E-value=2e-20 Score=126.03 Aligned_cols=106 Identities=22% Similarity=0.281 Sum_probs=85.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+++++.++..++.++|++++|||++++.+|.....|+..+... ...+.|+++|+||+|+.... ..++...
T Consensus 61 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~ 138 (173)
T cd04154 61 NIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIRE 138 (173)
T ss_pred EEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHH
Confidence 47999999999999999999999999999999999999888887777542 22468999999999985432 3444444
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
+.. ..+++++++||++|.|++++|+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 139 ALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 432 23468999999999999999999864
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=3.6e-20 Score=126.04 Aligned_cols=111 Identities=22% Similarity=0.344 Sum_probs=85.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..+|..+++++|++|||+|++++.++.....++..+... .....|+++++||.|+... ....+...
T Consensus 64 ~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~ 141 (182)
T PTZ00133 64 TMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTE 141 (182)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHH
Confidence 48999999999999999999999999999999999999888777766432 2235899999999998532 22222222
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
... ...+.++++||++|.|+.++|++|...+...
T Consensus 142 ~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 142 KLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred HhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 111 1123567899999999999999999877653
No 107
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.85 E-value=3.3e-20 Score=126.60 Aligned_cols=111 Identities=37% Similarity=0.604 Sum_probs=93.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC----------C
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA----------N 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~----------~ 69 (144)
++|||+|+++|..+...++.++|+++++||+++.++|+.+. .|+..+....+ ..|+++|+||.|+.. .
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~ 130 (187)
T cd04129 52 ALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQ 130 (187)
T ss_pred EEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccC
Confidence 47999999999888778889999999999999999999986 58888876554 599999999999843 2
Q ss_pred cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 70 KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 70 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+.+..++...+++..+. +++++||++|.|++++|+++++.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 131 RFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred CcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 33445667778888885 89999999999999999999988754
No 108
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.85 E-value=3.7e-20 Score=126.01 Aligned_cols=110 Identities=25% Similarity=0.385 Sum_probs=88.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+++|..+|..+++++|++++|+|+++..++..+..|+..+..... ...|+++++||.|+... ....+...
T Consensus 55 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~ 132 (183)
T cd04152 55 HFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEK 132 (183)
T ss_pred EEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHH
Confidence 4899999999999999999999999999999999999988888877765432 36899999999998532 23344433
Q ss_pred HHHH--c----CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FADE--I----GIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~--~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+... . +++++++||++|.|++++|++|.+.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 133 LLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred HhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 3321 1 2468899999999999999999998864
No 109
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.84 E-value=8.6e-20 Score=122.88 Aligned_cols=109 Identities=31% Similarity=0.577 Sum_probs=90.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||+|+++|..++..++.++|++++|||++++.+|+.+. .|+..+.... ...|+++++||.|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~ 130 (175)
T cd01870 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKM 130 (175)
T ss_pred EEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhc
Confidence 48999999999999988999999999999999999999885 4777776543 36899999999998542
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
..+...+...++...+. +++++||++|.|++++|+++...+
T Consensus 131 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 131 KQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred cCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 12334566667777664 899999999999999999998764
No 110
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.84 E-value=5.7e-20 Score=122.09 Aligned_cols=106 Identities=22% Similarity=0.308 Sum_probs=82.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
++|||||+++|..+|+.++.++|+++||+|+++..++.....|+..+.... ....|+++++||+|+.+... ..+.
T Consensus 48 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~ 125 (162)
T cd04157 48 TAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKI 125 (162)
T ss_pred EEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHH
Confidence 489999999999999999999999999999999999988888877765431 24689999999999854322 2222
Q ss_pred HHHHH-----HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 78 KAFAD-----EIGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 78 ~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
..... ...++++++||++|.|++++|++|.+
T Consensus 126 ~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 126 TQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred HHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 22211 11246899999999999999999864
No 111
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=3.3e-20 Score=124.55 Aligned_cols=106 Identities=24% Similarity=0.334 Sum_probs=84.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHH--
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETA-- 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~-- 77 (144)
++|||||+++++.+|..|++++|+++||||+++..++..+..|+..+..... ...|+++|+||.|+..... ..+.
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~ 123 (167)
T cd04161 46 CIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIE 123 (167)
T ss_pred EEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHH
Confidence 5899999999999999999999999999999999999999999888865432 3689999999999865432 2221
Q ss_pred ----HHHHHHcC--CcEEEeecCCC------CCHHHHHHHHHH
Q 032243 78 ----KAFADEIG--IPFMETSAKDS------TNVEQAFMAMAA 108 (144)
Q Consensus 78 ----~~~~~~~~--~~~~~~Sa~~~------~~i~~l~~~i~~ 108 (144)
..+++..+ +.++++||++| .|+.+.|+||..
T Consensus 124 ~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 124 YLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred hcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 12222222 46788999998 899999999974
No 112
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.83 E-value=3.5e-20 Score=122.64 Aligned_cols=115 Identities=31% Similarity=0.577 Sum_probs=105.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+||++|......|++++.+.++||+-+|..||+.+..|...+....+ .+|.++|-||+|+.....+...++..+
T Consensus 72 mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~l 150 (246)
T KOG4252|consen 72 MLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGL 150 (246)
T ss_pred HHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHH
Confidence 5899999999999999999999999999999999999999999999977664 599999999999988878878888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
++.++..++.+|++...|+..+|..++..+.++..+
T Consensus 151 ak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 151 AKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998766544
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.83 E-value=3.5e-20 Score=123.08 Aligned_cols=106 Identities=22% Similarity=0.287 Sum_probs=80.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+++|..+|+.+++++|++++|+|++++.++.....++..+.. ......|+++++||+|+.+.. ...+...
T Consensus 46 ~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~ 123 (158)
T cd04151 46 QVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISE 123 (158)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHH
Confidence 5899999999999999999999999999999998888776665554433 222368999999999985432 1222221
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
... ..+++++++||++|.|++++|++|++
T Consensus 124 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 124 KLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 111 11246999999999999999999864
No 114
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=1.8e-19 Score=120.66 Aligned_cols=111 Identities=27% Similarity=0.358 Sum_probs=87.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~ 77 (144)
++|||+|++++...+..++.++|+++||||++++.+|+.+. .|+..+..... ..|+++++||+|+.+..... ....
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~ 128 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEM 128 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHH
Confidence 48999999998888888899999999999999999999985 57777765543 68999999999996544321 2233
Q ss_pred HHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 78 KAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 78 ~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
..+....+ .+++++||++|.|++++|+.+...+.+
T Consensus 129 ~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 129 LPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 33333332 379999999999999999999888753
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.82 E-value=2.1e-19 Score=121.36 Aligned_cols=106 Identities=22% Similarity=0.299 Sum_probs=83.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++...|..+++++|+++||+|+++..++.....++..+.... ....|+++++||+|+... ...++..+
T Consensus 62 ~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~ 139 (174)
T cd04153 62 LMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISE 139 (174)
T ss_pred EEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHH
Confidence 489999999999999999999999999999999999988877777664432 236899999999998542 22333222
Q ss_pred HH-----HHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FA-----DEIGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
.. ...+++++++||++|.|++++|++|.+
T Consensus 140 ~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 140 SLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 21 123457899999999999999999864
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.82 E-value=1e-19 Score=120.77 Aligned_cols=106 Identities=25% Similarity=0.379 Sum_probs=83.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|++++..+|..++.++|++++|+|++++.++..+..|+..+.... ..+.|+++++||+|+... ....+...
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~ 124 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITR 124 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHH
Confidence 489999999999999999999999999999999999998888877775432 246899999999998532 12233222
Q ss_pred HH------HHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FA------DEIGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~------~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
.. ...+++++++||++|.|++++|++|..
T Consensus 125 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 125 RFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 21 112347899999999999999999864
No 117
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=3e-19 Score=119.30 Aligned_cols=106 Identities=31% Similarity=0.444 Sum_probs=85.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..++..++.++|+++||+|+++..++.....|+..+.... ..+.|+++++||+|+... ....+...
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~ 130 (167)
T cd04160 53 KFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKE 130 (167)
T ss_pred EEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHH
Confidence 489999999999999999999999999999999888888888877775532 246899999999998543 23344444
Q ss_pred HHHH-------cCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FADE-------IGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~~~-------~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
+... .+++++++||++|.|+++++++|.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 131 VFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 4332 2358999999999999999999864
No 118
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.81 E-value=3.2e-19 Score=119.44 Aligned_cols=107 Identities=36% Similarity=0.600 Sum_probs=89.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANK--------- 70 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------- 70 (144)
++|||||+++|..+...+++.+|++++|||++++.+|..... |+..+..... ..|+++|+||.|+....
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~ 129 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKG 129 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccC
Confidence 589999999998888888999999999999999999887654 6666665543 69999999999986543
Q ss_pred --ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHH
Q 032243 71 --VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 71 --~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
.+...+...+....+. +++++||++|.|++++|++|.+
T Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 130 KEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred CCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 2345667777777777 9999999999999999998875
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.80 E-value=6.7e-19 Score=120.17 Aligned_cols=107 Identities=26% Similarity=0.352 Sum_probs=86.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+.++...|..++.++|++++|+|+++..++.....|+..+..... .+.|+++++||+|+.. .+..++...
T Consensus 66 ~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~ 143 (190)
T cd00879 66 KTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQ 143 (190)
T ss_pred EEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHH
Confidence 4799999999999999999999999999999999889888887777755332 4689999999999853 344555555
Q ss_pred HHHH----------------cCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 80 FADE----------------IGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 80 ~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+... ..++++++||++|+|++++|++|...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 144 ALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred HhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 4432 12468999999999999999999764
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.80 E-value=6.5e-19 Score=116.78 Aligned_cols=106 Identities=24% Similarity=0.325 Sum_probs=85.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++...+..++.++|++++|||++++.++.....|+..+.... ....|+++++||+|+.... ...+...
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~ 123 (158)
T cd00878 46 TVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIE 123 (158)
T ss_pred EEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHH
Confidence 489999999999999999999999999999999999998888887775532 3468999999999986533 2333333
Q ss_pred HHHH-----cCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FADE-----IGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~~~-----~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
.... ..++++++||++|.|++++|++|..
T Consensus 124 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 124 KLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred hhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 3221 2358999999999999999999864
No 121
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.5e-19 Score=118.33 Aligned_cols=110 Identities=22% Similarity=0.330 Sum_probs=90.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++||++||++++++|++|+.+.+++|||+|++|+..+.+.+..+..+....+ ...|+++.+||+|+...-. ..++..
T Consensus 64 ~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~ 141 (181)
T KOG0070|consen 64 TVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITN 141 (181)
T ss_pred EEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHh
Confidence 4899999999999999999999999999999999999998887777766554 5799999999999864322 333322
Q ss_pred HH-----HHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FA-----DEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.. ....|.+..++|.+|+|+.+.++++...+..
T Consensus 142 ~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 142 KLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred HhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 22 2234678899999999999999999988753
No 122
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.79 E-value=1.6e-18 Score=117.04 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=80.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++|+|+|+++..++.....|.... . ...|+++++||+|+..... ......+
T Consensus 70 ~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~~--~~~~~~~ 143 (179)
T cd01890 70 NLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSADP--ERVKQQI 143 (179)
T ss_pred EEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCCH--HHHHHHH
Confidence 48999999999999999999999999999999876666555543322 1 2579999999999853221 2223445
Q ss_pred HHHcCC---cEEEeecCCCCCHHHHHHHHHHHH
Q 032243 81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
++..++ .++++||++|.|++++|+++...+
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 555555 489999999999999999998764
No 123
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.79 E-value=2.5e-18 Score=112.13 Aligned_cols=111 Identities=23% Similarity=0.344 Sum_probs=90.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHH---
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYET--- 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~--- 76 (144)
++||++||..+++.|++||+.+|++|+|||++|+..+++....+..+.... ....|++|++||.|+... +..+.
T Consensus 63 ~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~ 140 (185)
T KOG0073|consen 63 NIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISK 140 (185)
T ss_pred EEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHH
Confidence 589999999999999999999999999999999999998877776664421 135799999999998522 22222
Q ss_pred ---HHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 77 ---AKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 77 ---~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
...+++..+++++.|||.+|+++.+.++|+..-++.+
T Consensus 141 ~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 141 ALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred hhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 2334466678999999999999999999999988763
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.79 E-value=3e-18 Score=115.92 Aligned_cols=108 Identities=31% Similarity=0.462 Sum_probs=86.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
.+||++|+..++++|+.|+.++|++|||+|+++...+.+....+..+... .....|+++++||+|+... ....+...
T Consensus 61 ~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~ 138 (175)
T PF00025_consen 61 TIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKE 138 (175)
T ss_dssp EEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHH
T ss_pred EEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHh
Confidence 38999999999999999999999999999999998888888777776543 2247999999999998542 33444443
Q ss_pred HHH------HcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 80 FAD------EIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 80 ~~~------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
... ...+.++.+||.+|+|+.+.++||.+.+
T Consensus 139 ~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 139 YLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp HTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 322 1235689999999999999999998764
No 125
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.79 E-value=1.9e-18 Score=119.24 Aligned_cols=97 Identities=23% Similarity=0.395 Sum_probs=80.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-------------------CCCCcEEEEE
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-------------------SDNVNKLLVG 61 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ilv~ 61 (144)
+||||+|+++|..++..|+.++|++|+|||++++.||+.+..|+..+.... ...+|++|||
T Consensus 57 ~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVG 136 (202)
T cd04102 57 ELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIG 136 (202)
T ss_pred EEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEE
Confidence 589999999999999999999999999999999999999999999986531 2368999999
Q ss_pred eCCCCCCCcccCHH----HHHHHHHHcCCcEEEeecCCCC
Q 032243 62 NKCDLTANKVVSYE----TAKAFADEIGIPFMETSAKDST 97 (144)
Q Consensus 62 nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~ 97 (144)
||.|+.+.+.+... ....+++..+++.+..++.++.
T Consensus 137 nK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 137 TKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred ECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 99999665444333 2345577788998888888664
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=2.6e-18 Score=117.04 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=84.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+.++..+|..++.++|++++|+|++++.++.....++..+... ...+.|+++++||+|+.. .++.+++..
T Consensus 64 ~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~ 141 (184)
T smart00178 64 TTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRY 141 (184)
T ss_pred EEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHH
Confidence 37999999999999999999999999999999999998888777776543 223689999999999853 334444443
Q ss_pred HHHH------------cCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 80 FADE------------IGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 80 ~~~~------------~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.... ..+.++++||++|.|+++++++|...
T Consensus 142 ~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 142 ALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred HcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 3211 12368999999999999999999764
No 127
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=1.1e-17 Score=116.58 Aligned_cols=110 Identities=33% Similarity=0.594 Sum_probs=93.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|+++|..++..++..++++++|||+++..+|..+..|+..+.... .+.|+++++||.|+... .+.. +...+
T Consensus 61 ~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~ 137 (215)
T PTZ00132 61 NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITF 137 (215)
T ss_pred EEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHH
Confidence 489999999999999999999999999999999999999999998887654 36899999999998543 3323 33456
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.+..++.++++||++|.|++++|.+|++.+...
T Consensus 138 ~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 138 HRKKNLQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 677788999999999999999999999988753
No 128
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=2.1e-17 Score=121.79 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=86.2
Q ss_pred CceeccchhH-------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQER-------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 71 (144)
+||||||..+ ....+..++++++++++|+|+++.++++++..|...+..+.. ...|+++|+||+|+.....
T Consensus 209 ~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~ 288 (335)
T PRK12299 209 VIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE 288 (335)
T ss_pred EEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh
Confidence 4899999732 222333456789999999999987789999899888877643 3689999999999865443
Q ss_pred cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 72 VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+.......+....+++++++||+++.|+++++++|...+..
T Consensus 289 ~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 289 EREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 32333444445566899999999999999999999998864
No 129
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.73 E-value=4.4e-17 Score=105.64 Aligned_cols=125 Identities=22% Similarity=0.393 Sum_probs=105.8
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc-----CHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-----SYET 76 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-----~~~~ 76 (144)
|||.+|++++..+.+....++-+++|+||++.+.+++.+..|+...+..+...+| ++||+|.|+.-.-+. -..+
T Consensus 73 IwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~q 151 (205)
T KOG1673|consen 73 IWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQ 151 (205)
T ss_pred EEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999888776666 678999998422111 1245
Q ss_pred HHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCc
Q 032243 77 AKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPT 127 (144)
Q Consensus 77 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 127 (144)
++.+++.++.+.+.+|+..+.|+..+|..+...+....-..++-...+.|.
T Consensus 152 ar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~~ti~~~~~iGdPi 202 (205)
T KOG1673|consen 152 ARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNLPWTIPEILTIGDPI 202 (205)
T ss_pred HHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCCceecccccccCccc
Confidence 677888889999999999999999999999999988877777766665554
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.73 E-value=2.5e-17 Score=108.39 Aligned_cols=106 Identities=25% Similarity=0.407 Sum_probs=82.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+++|..++..++.++|++++|+|+++..++.....|+..+.... ....|+++++||.|+.+... ..+...
T Consensus 47 ~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~ 124 (159)
T cd04159 47 KVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIE 124 (159)
T ss_pred EEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHH
Confidence 489999999999999999999999999999999988888777777664422 23689999999999864322 222221
Q ss_pred HH-----HHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FA-----DEIGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
.. ....++++++|+++|.|+++++++|..
T Consensus 125 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 125 QMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 11 112357899999999999999999875
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.73 E-value=3e-17 Score=109.81 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=80.9
Q ss_pred Cceeccchh----HHhhhhhhh---hcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCc
Q 032243 1 MQWDTAGQE----RFRTITSSY---YRGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANK 70 (144)
Q Consensus 1 qi~Dt~G~~----~~~~~~~~~---~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 70 (144)
+||||||+. ++..+...+ +.++|++++|+|+++. ++++.+..|...+..... ...|+++|+||.|+.+..
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 130 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE 130 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch
Confidence 489999963 222333343 4469999999999998 788888888888866532 358999999999986544
Q ss_pred ccCHHHHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 71 VVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 71 ~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.. ......+... .+.+++++||+++.|++++|+++...
T Consensus 131 ~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 131 EL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 43 3334444444 36789999999999999999998865
No 132
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.9e-17 Score=104.81 Aligned_cols=109 Identities=20% Similarity=0.356 Sum_probs=87.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++||+||+++.+++|++||.+.-++|||+|+.+.+..++.++.+..+... .....+++|.+||+|+..... .+++..
T Consensus 64 NvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d 141 (180)
T KOG0071|consen 64 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQD 141 (180)
T ss_pred eeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHH
Confidence 58999999999999999999999999999999999888887766666433 335789999999999965433 444444
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.+ ...|.+.++||.+|+|+.+-|.|+...++
T Consensus 142 ~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 142 KLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred HhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 432 23467889999999999999999987653
No 133
>PLN00023 GTP-binding protein; Provisional
Probab=99.72 E-value=4.8e-17 Score=118.36 Aligned_cols=86 Identities=23% Similarity=0.560 Sum_probs=74.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS------------DNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ilv~nK~Dl~~ 68 (144)
+||||+|+++|..++..|+.++|++|+|||++++.+|+.+..|+..+..... ..+|++||+||.||..
T Consensus 86 qIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 86 ELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred EEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 5899999999999999999999999999999999999999999999976531 2589999999999965
Q ss_pred Cc---c---cCHHHHHHHHHHcCC
Q 032243 69 NK---V---VSYETAKAFADEIGI 86 (144)
Q Consensus 69 ~~---~---~~~~~~~~~~~~~~~ 86 (144)
.+ . +..+++.++++..++
T Consensus 166 ~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 166 KEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccccccHHHHHHHHHHcCC
Confidence 42 2 257888999998874
No 134
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.72 E-value=7.7e-17 Score=107.74 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=75.1
Q ss_pred CceeccchhHHh---------hhhhhhhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFR---------TITSSYYRGAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
+||||||+.... .........+|++++|+|+++..++ .....|+..+.... ...|+++++||.|+...
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~ 128 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTF 128 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCch
Confidence 489999984210 1111122346899999999886543 55556777665543 35899999999999654
Q ss_pred cccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 70 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
..+. +...+....+++++++||++|.|++++|+++.+.+
T Consensus 129 ~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 129 EDLS--EIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred hhHH--HHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 4332 23444555567999999999999999999998875
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.72 E-value=1.5e-16 Score=105.69 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=72.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYE 75 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~ 75 (144)
++|||||+++|......++.++|++++|+|+++ +.++..+ ..+.... ..|+++++||+|+...... ...
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~ 127 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILELLG--IKRGLVVLTKADLVDEDWLELVEE 127 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHHhC--CCcEEEEEECccccCHHHHHHHHH
Confidence 489999999998877788899999999999986 3333322 1122211 2489999999998643211 122
Q ss_pred HHHHHHHH---cCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 76 TAKAFADE---IGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 76 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
+.....+. .+.+++++||+++.|++++++.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 128 EIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 33333333 3579999999999999999998754
No 136
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.71 E-value=2.8e-17 Score=105.59 Aligned_cols=105 Identities=27% Similarity=0.469 Sum_probs=83.4
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||.|||.+|+.+|+.|++.++++++|+|+.+++.+....+.+..+... .-..+|+++.|||.|+... +.. ..+
T Consensus 69 lwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~---~~l 143 (186)
T KOG0075|consen 69 LWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSK---IAL 143 (186)
T ss_pred EEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccH---HHH
Confidence 7999999999999999999999999999999988777666555555433 2347999999999998532 111 234
Q ss_pred HHHcC--------CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIG--------IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~--------~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
...+| +.+|.+|++...+++.+.+|+.++-.
T Consensus 144 i~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 144 IERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred HHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 44444 36899999999999999999998764
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.71 E-value=9.2e-17 Score=104.77 Aligned_cols=98 Identities=23% Similarity=0.223 Sum_probs=73.8
Q ss_pred Cceeccch-----hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 1 MQWDTAGQ-----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 1 qi~Dt~G~-----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
.+|||||+ ..|..+.. .++++|++++|||++++.++.. ..|.... ..|+++++||+|+.+ .....+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHH
Confidence 37999998 23444444 5899999999999999888754 2333321 249999999999854 233455
Q ss_pred HHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHH
Q 032243 76 TAKAFADEIGI-PFMETSAKDSTNVEQAFMAMA 107 (144)
Q Consensus 76 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~ 107 (144)
+...+++..+. +++++||++|.|++++|+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 66667777775 899999999999999999874
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=5.7e-16 Score=104.03 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=80.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
.+|||+|+.++...+..+++++|++++|+|+++..++.....++..+.... ...+|+++++||.|+..... .++
T Consensus 61 ~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~--- 135 (173)
T cd04155 61 NVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE--- 135 (173)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH---
Confidence 379999999999999999999999999999999888888777766664432 23689999999999854322 222
Q ss_pred HHHHcC--------CcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FADEIG--------IPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~~~~~--------~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
+.+..+ ++++++||++|.|++++|++|.+
T Consensus 136 i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 136 IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 222222 24789999999999999999864
No 139
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.69 E-value=8.8e-17 Score=107.08 Aligned_cols=114 Identities=35% Similarity=0.569 Sum_probs=96.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcccC-HH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKVVS-YE 75 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~~~~-~~ 75 (144)
|+||++||++|..|.+.|++.+++.++|||+++..+|+.+..|...+... .....|+++..||+|........ ..
T Consensus 78 qLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~ 157 (229)
T KOG4423|consen 78 QLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATR 157 (229)
T ss_pred HHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHH
Confidence 68999999999999999999999999999999999999999999988443 22368889999999985432221 35
Q ss_pred HHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 76 TAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 76 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
...++.+++|+ .++++|++.+.++.|+.+.+++++....
T Consensus 158 ~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 158 QFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred HHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 56677888886 8999999999999999999999987544
No 140
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=8.6e-17 Score=103.04 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=82.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
|+||.+|+-..++.|+-||.+.|++|+|+|.+|.+...-....+..+... .......+|++||+|..... ...++..
T Consensus 65 ~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~ 142 (182)
T KOG0072|consen 65 QVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLK 142 (182)
T ss_pred eeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHH
Confidence 68999999999999999999999999999999987665444444444322 22457788999999974221 1222211
Q ss_pred -----HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 -----FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 -----~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
..+...+.+|.+||.+|+|++++++|+.+-+++
T Consensus 143 ~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 143 MLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred HhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 122233789999999999999999999998864
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.68 E-value=6.3e-16 Score=102.11 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=76.9
Q ss_pred CceeccchhHHhh------hhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRT------ITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||||+.++.. ++..++. ++|++++|+|.++..... .++..+... ..|+++++||.|+.+...+
T Consensus 46 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~ 119 (158)
T cd01879 46 EIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLEL---GLPVVVALNMIDEAEKRGI 119 (158)
T ss_pred EEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHHc---CCCEEEEEehhhhcccccc
Confidence 4899999987654 3566664 999999999998754322 233333322 5899999999999654443
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
. .....+....+.+++++||.++.|++++++++...+
T Consensus 120 ~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 120 K-IDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred h-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 2 234456667788999999999999999999998764
No 142
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.67 E-value=7.5e-16 Score=113.43 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=81.2
Q ss_pred CceeccchhH-------HhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQER-------FRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+ ....+...++++|++++|+|+++. ++++++..|...+..+.. ...|+++|+||+|+..
T Consensus 208 ~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 208 VIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred EEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 4899999742 222223345689999999999976 678888888777766542 3689999999999865
Q ss_pred CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.... .+....+.+..+.+++++||+++.|+++++++|.+.+
T Consensus 288 ~~~~-~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 288 EEEL-AELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred hHHH-HHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 4322 3334445556678999999999999999999998764
No 143
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.9e-16 Score=103.46 Aligned_cols=113 Identities=28% Similarity=0.420 Sum_probs=89.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCH-HHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSY-ETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~-~~~~ 78 (144)
.|||.+||+..+++|..||..+|++|+++|+++++.|......+..+..... ...|+++.+||.|+.+...+.+ +...
T Consensus 72 ~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~ 151 (197)
T KOG0076|consen 72 SFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVF 151 (197)
T ss_pred EEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHh
Confidence 3899999999999999999999999999999999999887776666644432 5799999999999865433211 1122
Q ss_pred HHHHHcC---CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 79 AFADEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 79 ~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
..++..+ .++.++||.+|.|+++...|+...+...
T Consensus 152 ~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 152 GLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 2233332 5899999999999999999999998643
No 144
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.67 E-value=7.8e-16 Score=106.26 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=76.6
Q ss_pred Cceeccchh---------HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQE---------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
+||||+|.. .|...+ ..+.++|++++|+|++++.++..+..|...+........|+++|+||+|+.+...
T Consensus 92 ~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~ 170 (204)
T cd01878 92 LLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE 170 (204)
T ss_pred EEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH
Confidence 489999972 233333 2367899999999999988887776666666554444689999999999865332
Q ss_pred cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 72 VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
. .......+.+++++||+++.|+++++++|...
T Consensus 171 ~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 171 L-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred H-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 2 12334455689999999999999999998765
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.66 E-value=3.9e-15 Score=96.41 Aligned_cols=107 Identities=56% Similarity=0.903 Sum_probs=83.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCcccCHHH-HH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYET-AK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~ 78 (144)
.+||++|+..+...+..++..+|++++|+|++++.++.....|+... ........|+++++||.|+.......... ..
T Consensus 48 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~ 127 (157)
T cd00882 48 QIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE 127 (157)
T ss_pred EEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH
Confidence 38999999999988889999999999999999999888887763222 22333479999999999986544332222 33
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHH
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMA 107 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 107 (144)
......+.+++++|+.++.|+++++++|.
T Consensus 128 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 128 QLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 34445568999999999999999999875
No 146
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.66 E-value=9.8e-16 Score=105.95 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=73.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~ 78 (144)
+||||||+++|...+...+.++|++++|+|++++.........+..+.... ..|+++++||.|+.+..... .+.+.
T Consensus 86 ~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~~~~i~ 163 (203)
T cd01888 86 SFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALENYEQIK 163 (203)
T ss_pred EEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHHHHHHH
Confidence 489999999998888888889999999999987321111112222222221 24789999999986432210 12223
Q ss_pred HHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 79 AFADEI---GIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 79 ~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.+.... +++++++||++|.|++++++.|.+.+
T Consensus 164 ~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 164 KFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 333322 56899999999999999999998765
No 147
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.65 E-value=2.8e-15 Score=99.89 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=74.7
Q ss_pred ceeccch----hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 2 QWDTAGQ----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 2 i~Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
+|||||+ .++.......+.++|++++|+|+++..++. ..|+..+ . ...|+++++||.|+.. ......
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~-~~~~ii~v~nK~Dl~~---~~~~~~ 111 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRL--PAGLLDI---G-VSKRQIAVISKTDMPD---ADVAAT 111 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccccc--CHHHHhc---c-CCCCeEEEEEccccCc---ccHHHH
Confidence 6999997 223222233478999999999999876553 2333332 1 2478999999999843 234556
Q ss_pred HHHHHHcCC--cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 78 KAFADEIGI--PFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 78 ~~~~~~~~~--~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
..+++..++ +++++||++|.|++++|+.+.+.+.+
T Consensus 112 ~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 112 RKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 667777774 99999999999999999999888754
No 148
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.64 E-value=4.2e-15 Score=96.30 Aligned_cols=112 Identities=25% Similarity=0.402 Sum_probs=97.6
Q ss_pred CceeccchhHH-hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERF-RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
.|+||+|...+ ..+-++|+.-+|++++|||..++.||+.+..+...+....+ ..+|+++.+||.|+.++..+..+.+.
T Consensus 63 ~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~ 142 (198)
T KOG3883|consen 63 RLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQ 142 (198)
T ss_pred EEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHH
Confidence 37999998777 67789999999999999999999999988776666655433 47999999999999888888888999
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.+++...+..++++|.+...+-+.|..+...+.+
T Consensus 143 ~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 143 IWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred HHHhhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence 9999999999999999999999999988887753
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.64 E-value=1.5e-15 Score=101.98 Aligned_cols=109 Identities=21% Similarity=0.212 Sum_probs=77.0
Q ss_pred CceeccchhH----Hhhhh---hhhhcCCCEEEEEEeCCCH------HHHHHHHHHHHHHHHhcC-------CCCcEEEE
Q 032243 1 MQWDTAGQER----FRTIT---SSYYRGAHGIIIVYDVTDQ------ESFNNVKQWLNEIDRYAS-------DNVNKLLV 60 (144)
Q Consensus 1 qi~Dt~G~~~----~~~~~---~~~~~~~d~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ilv 60 (144)
+||||||..+ ...++ ..++.++|++++|+|+++. .++.++..|...+..... ...|++++
T Consensus 47 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 126 (176)
T cd01881 47 QVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYV 126 (176)
T ss_pred EEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEE
Confidence 4899999732 22222 3346789999999999887 577777777777654432 25899999
Q ss_pred EeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 61 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 61 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+||.|+..................+.+++++||+++.|++++++++...
T Consensus 127 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 127 LNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 9999986544332221222333345689999999999999999988754
No 150
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.63 E-value=4.8e-15 Score=98.86 Aligned_cols=107 Identities=18% Similarity=0.141 Sum_probs=73.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC-HHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~ 79 (144)
.+|||||+..|..++..++..+|++++|+|+++....... ..+..+.. ...|+++++||+|+....... ......
T Consensus 53 ~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 128 (168)
T cd01887 53 TFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSE 128 (168)
T ss_pred EEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHH
Confidence 4899999999999999999999999999999874221111 11222222 258999999999985322100 111111
Q ss_pred HHH----Hc--CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FAD----EI--GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~----~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.. .. .++++++||++|.|+++++++|.....
T Consensus 129 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 129 LGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred hhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 111 11 258999999999999999999987753
No 151
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.63 E-value=4e-15 Score=116.96 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=80.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+.+|...+..++..+|++++|+|+++..+......|...+. .+.|+++++||+|+.... ......++
T Consensus 73 ~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el 146 (595)
T TIGR01393 73 NLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEI 146 (595)
T ss_pred EEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHH
Confidence 489999999999999999999999999999998655555555544332 247999999999985321 12223344
Q ss_pred HHHcCC---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.+..++ .++++||++|.|++++|+.|.+.+.
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 555555 4899999999999999999988763
No 152
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=100.73 Aligned_cols=114 Identities=39% Similarity=0.602 Sum_probs=88.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-------- 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-------- 71 (144)
++|||+|+++|+.++..|+.+++++++++|.++. .+++....|...+........|+++++||+|+.....
T Consensus 57 ~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~ 136 (219)
T COG1100 57 QLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQ 136 (219)
T ss_pred EeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhh
Confidence 4899999999999999999999999999999994 5555557788888777655689999999999976532
Q ss_pred ----cCHHHHHHHHHHc---CCcEEEeecC--CCCCHHHHHHHHHHHHHHhh
Q 032243 72 ----VSYETAKAFADEI---GIPFMETSAK--DSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 72 ----~~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~~l~~~i~~~~~~~~ 114 (144)
............. ...++++|++ .+.++.++|..+...+....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 137 LNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred hhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 1122212222111 2358999999 99999999999999986543
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.62 E-value=3.8e-15 Score=102.18 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=68.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-cCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~ 79 (144)
+||||||+++|..++..++.++|++++|+|+++.. +.....++..... ...|+++++||+|+..... ....+...
T Consensus 68 ~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 143 (194)
T cd01891 68 NIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFD 143 (194)
T ss_pred EEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999998732 2223333333332 2589999999999854322 11233333
Q ss_pred HHHH-------cCCcEEEeecCCCCCHHHH
Q 032243 80 FADE-------IGIPFMETSAKDSTNVEQA 102 (144)
Q Consensus 80 ~~~~-------~~~~~~~~Sa~~~~~i~~l 102 (144)
+... .+++++++||++|.|+.+.
T Consensus 144 ~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 144 LFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHhCCccccCccCEEEeehhcccccccc
Confidence 3322 3578999999999777433
No 154
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=96.95 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=82.8
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
|+|||||+||+.||..++++++++|+++|.+.+..+ ....++..+.... .+|++|..||+||.+... .+++..+.
T Consensus 72 LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~p--pe~i~e~l 146 (187)
T COG2229 72 LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDALP--PEKIREAL 146 (187)
T ss_pred EecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCCC--HHHHHHHH
Confidence 689999999999999999999999999999998887 3344455554443 289999999999976543 45555555
Q ss_pred HHc--CCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 82 DEI--GIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 82 ~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+.. ..++++.+|..+.+..+.++.+...
T Consensus 147 ~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 147 KLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 544 7899999999999999988877665
No 155
>PRK04213 GTP-binding protein; Provisional
Probab=99.61 E-value=1.3e-15 Score=104.95 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=71.2
Q ss_pred Cceeccc-----------hhHHhhhhhhhhc----CCCEEEEEEeCCCHHHH-H---------HHHHHHHHHHHhcCCCC
Q 032243 1 MQWDTAG-----------QERFRTITSSYYR----GAHGIIIVYDVTDQESF-N---------NVKQWLNEIDRYASDNV 55 (144)
Q Consensus 1 qi~Dt~G-----------~~~~~~~~~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~ 55 (144)
++||||| +++++.++..++. .++++++|+|.++...+ + ....++..+.. ...
T Consensus 55 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~ 131 (201)
T PRK04213 55 ILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGI 131 (201)
T ss_pred EEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCC
Confidence 4899999 6888888877764 35788899987653211 0 00111222222 258
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---------cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 56 NKLLVGNKCDLTANKVVSYETAKAFADEIGI---------PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 56 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
|+++|+||+|+.+.. .+....+.+..++ +++++||++| |+++++++|.+.+.
T Consensus 132 p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 132 PPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred CeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 999999999985432 2344455555554 5899999999 99999999998764
No 156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.59 E-value=2.5e-14 Score=106.22 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=74.0
Q ss_pred Cceeccch---------hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQ---------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
+||||+|. +.|...+. .+.++|++++|+|++++.++..+..|...+......+.|+++|+||+|+.+...
T Consensus 240 ~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~ 318 (351)
T TIGR03156 240 LLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR 318 (351)
T ss_pred EEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh
Confidence 48999997 33444443 478999999999999988777766665555444334689999999999854221
Q ss_pred cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 72 VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.... .....+++++||++|.|++++++.|...
T Consensus 319 -----v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 319 -----IERL-EEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -----HHHH-HhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 1111 1222468999999999999999998764
No 157
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.59 E-value=7e-15 Score=104.37 Aligned_cols=96 Identities=24% Similarity=0.331 Sum_probs=78.3
Q ss_pred hHHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCc
Q 032243 9 ERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 87 (144)
Q Consensus 9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (144)
++|+.+.+.++.++|++++|||++++. +++.+..|+..+.. .++|+++|+||.||.+...+..+... .....+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~-~~~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLD-IYRNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHH-HHHHCCCe
Confidence 788899999999999999999999876 89999999886654 35899999999999654443223333 34457889
Q ss_pred EEEeecCCCCCHHHHHHHHHH
Q 032243 88 FMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 88 ~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
++.+||++|.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998763
No 158
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.58 E-value=2.5e-14 Score=93.61 Aligned_cols=106 Identities=34% Similarity=0.453 Sum_probs=80.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH-HHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ-ESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
++|||+|+.++..++..++..++++++++|.... .++.... .|...+........|+++++||.|+.... .......
T Consensus 53 ~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~ 131 (161)
T TIGR00231 53 NLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAF 131 (161)
T ss_pred EEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHH
Confidence 4799999999999999999999999999998876 6666554 56655555443368999999999986533 2222223
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHH
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMA 107 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 107 (144)
.+......+++++||.+|.|+.+++++|.
T Consensus 132 ~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 132 LFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred HHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 23333346899999999999999999863
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=5.8e-15 Score=113.66 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=77.3
Q ss_pred Cceeccch----------hHHhhhh-hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQ----------ERFRTIT-SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~----------~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
+||||||. +.|..+. ..+++++|++++|+|+++..++.++. ++..+.. ...|+++|+||+|+...
T Consensus 262 ~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 262 RFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDE 337 (472)
T ss_pred EEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh
Confidence 48999995 3444433 34678999999999999887777653 3443433 35899999999999642
Q ss_pred cccC--HHHHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCC
Q 032243 70 KVVS--YETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118 (144)
Q Consensus 70 ~~~~--~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~ 118 (144)
.... ..+....... ...+++++||++|.|++++|+.+...+.......+
T Consensus 338 ~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~ 389 (472)
T PRK03003 338 DRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIP 389 (472)
T ss_pred hHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCC
Confidence 2110 1111111111 22589999999999999999999988865544433
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.57 E-value=4.7e-14 Score=95.59 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=77.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~ 78 (144)
+||||||+.++...+..++..+|++++|+|+++..+... ..++..... ...|+++++||.|+..+.... .....
T Consensus 65 ~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~ 140 (189)
T cd00881 65 NFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIK 140 (189)
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHH
Confidence 489999999999999999999999999999987544332 233333333 358999999999986532211 12222
Q ss_pred HHHHH--------------cCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 79 AFADE--------------IGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 79 ~~~~~--------------~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
..... ...+++++||++|.|++++++++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 141 ELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 23322 246899999999999999999998875
No 161
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=5.9e-14 Score=106.24 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=81.9
Q ss_pred CceeccchhH----Hhhhhhh---hhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQER----FRTITSS---YYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~----~~~~~~~---~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 68 (144)
.||||||..+ ...+... .+++++++++|+|+++. ++++++..|...+..+.+ ...|++||+||+|+..
T Consensus 209 ~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 209 VMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE 288 (424)
T ss_pred EEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence 4799999732 2223333 35679999999999864 677777788887776643 3689999999999832
Q ss_pred CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
. .+....+.+..+.+++++||+++.|+++++++|...+...
T Consensus 289 ~----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 289 A----EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred C----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 1 3344556666668899999999999999999999888654
No 162
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.57 E-value=2.5e-15 Score=96.17 Aligned_cols=108 Identities=27% Similarity=0.327 Sum_probs=83.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++||++||...++.|..||++.|++|+|+|++|+..|+++..-+..+... .....|+.+..||+|+.....++ +.+..
T Consensus 65 nvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e-eia~k 143 (185)
T KOG0074|consen 65 NVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE-EIALK 143 (185)
T ss_pred EEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-HHHHh
Confidence 48999999999999999999999999999999999999886655555333 22479999999999997654432 22211
Q ss_pred H----HHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 80 F----ADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 80 ~----~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+ .+...|.+-++||.++.|+.+-.+++..-
T Consensus 144 lnl~~lrdRswhIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 144 LNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred cchhhhhhceEEeeeCccccccCccCcchhhhcC
Confidence 1 22234678899999999999999887643
No 163
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.57 E-value=3.7e-14 Score=111.64 Aligned_cols=105 Identities=23% Similarity=0.272 Sum_probs=78.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+.+|...+..++..+|++|+|+|+++.........|.... . .+.|+++++||+|+..... ......+
T Consensus 77 nLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~---~~lpiIvViNKiDl~~a~~--~~v~~ei 150 (600)
T PRK05433 77 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E---NDLEIIPVLNKIDLPAADP--ERVKQEI 150 (600)
T ss_pred EEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCcccH--HHHHHHH
Confidence 48999999999999999999999999999998754444444433222 1 2579999999999853221 2222334
Q ss_pred HHHcCC---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
....++ .++++||++|.|+++++++|...+.
T Consensus 151 ~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 151 EDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 444555 4899999999999999999988764
No 164
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.56 E-value=6.4e-14 Score=95.94 Aligned_cols=107 Identities=17% Similarity=0.075 Sum_probs=71.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~ 78 (144)
++|||||+..+..........+|++++|+|+++.........+. +.... ..|+++++||+|+...... ..++..
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~ 146 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMK 146 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 48999999876554444466789999999998743333322221 11222 4799999999998643221 112222
Q ss_pred HHHH-------HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 79 AFAD-------EIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 79 ~~~~-------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.... ..+++++++||++|.|++++++.+.+.+.
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 2111 13578999999999999999999988775
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.56 E-value=3.7e-14 Score=93.33 Aligned_cols=99 Identities=18% Similarity=0.091 Sum_probs=69.7
Q ss_pred ceeccchhHHhh--------hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243 2 QWDTAGQERFRT--------ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 73 (144)
Q Consensus 2 i~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 73 (144)
+|||||...+.. .+..++.++|++++|+|..+..+.... .+...+... ..|+++++||+|+......
T Consensus 49 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~~- 123 (157)
T cd01894 49 LIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEEDE- 123 (157)
T ss_pred EEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHHH-
Confidence 799999876443 345667889999999998765433322 122222222 4899999999998643221
Q ss_pred HHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243 74 YETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.......+. +++++|++++.|++++++++.+.
T Consensus 124 ----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 124 ----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 223334565 78999999999999999999865
No 166
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=9.3e-14 Score=106.63 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=78.5
Q ss_pred CceeccchhH----Hh---hhhhhhhcCCCEEEEEEeCCC----HHHHHHHHHHHHHHHHhcC-----------CCCcEE
Q 032243 1 MQWDTAGQER----FR---TITSSYYRGAHGIIIVYDVTD----QESFNNVKQWLNEIDRYAS-----------DNVNKL 58 (144)
Q Consensus 1 qi~Dt~G~~~----~~---~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~-----------~~~p~i 58 (144)
+||||||... .. ...-.+++++|++|+|+|+++ .+++.++..+...+..+.. ...|++
T Consensus 209 ~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~I 288 (500)
T PRK12296 209 TVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRL 288 (500)
T ss_pred EEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEE
Confidence 4899999631 11 111224688999999999975 3455555555555544431 358999
Q ss_pred EEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 59 LVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 59 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
||+||+|+...... .+.........+++++++||+++.|+++++.+|...+.....
T Consensus 289 VVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 289 VVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred EEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 99999998543322 222233344557899999999999999999999999876543
No 167
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.55 E-value=9.1e-14 Score=100.04 Aligned_cols=105 Identities=16% Similarity=0.074 Sum_probs=73.0
Q ss_pred CceeccchhHH--------hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERF--------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
.||||||.... ......++.++|++++|+|+++..+.. ..++..+.. ...|+++|+||+|+......
T Consensus 51 i~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~ 125 (270)
T TIGR00436 51 IFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL 125 (270)
T ss_pred EEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH
Confidence 37999997431 222456678999999999998866553 233333332 25899999999998543222
Q ss_pred CHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 73 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
......+....+. +++++||++|.|++++++.+...+.
T Consensus 126 -~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 126 -LPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred -HHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 2333344444444 7999999999999999999988763
No 168
>PRK15494 era GTPase Era; Provisional
Probab=99.54 E-value=8.8e-14 Score=103.01 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=71.1
Q ss_pred CceeccchhH-Hhh-------hhhhhhcCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQER-FRT-------ITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~~-~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
+||||||+.+ +.. ....++.++|+++||+|..+ ++..... |+..+... ..|.++|+||+|+.+.
T Consensus 103 ~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~-- 175 (339)
T PRK15494 103 ILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK-- 175 (339)
T ss_pred EEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc--
Confidence 4899999842 222 12234789999999999765 3444433 44444332 3677899999998532
Q ss_pred cCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 72 VSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 72 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
...+...++...+ ..++++||++|.|+++++++|...+.
T Consensus 176 -~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 176 -YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred -cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 2344445554443 57999999999999999999988764
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.53 E-value=3.6e-14 Score=108.03 Aligned_cols=109 Identities=21% Similarity=0.192 Sum_probs=73.4
Q ss_pred CceeccchhHHhhh-----------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTI-----------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
.+|||||..++... ...++.++|++++|+|+++..+..+. .++..+.. ...|+++++||+|+...
T Consensus 223 ~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~ 298 (429)
T TIGR03594 223 LLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVKD 298 (429)
T ss_pred EEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCCC
Confidence 48999997543221 13467899999999999987665553 23333322 25899999999999621
Q ss_pred cccCHHHHHHHH-HHc----CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 70 KVVSYETAKAFA-DEI----GIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 70 ~~~~~~~~~~~~-~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
.. ...+..... ..+ ..+++++||++|.|++++|+++........
T Consensus 299 ~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 299 EK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred HH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 11 112222222 222 368999999999999999999998876543
No 170
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.52 E-value=1.4e-13 Score=108.10 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=78.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC--H
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS--Y 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~--~ 74 (144)
+||||||+++|...+..++.++|++++|+|+++ +.+++.+. .+.. . .+| +++++||+|+.+...+. .
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~-l--gi~~iIVVlNK~Dlv~~~~~~~~~ 125 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDL-L--GIPHTIVVITKADRVNEEEIKRTE 125 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHH-c--CCCeEEEEEECCCCCCHHHHHHHH
Confidence 489999999999998889999999999999987 34443321 2222 1 466 99999999996543221 2
Q ss_pred HHHHHHHHHc----CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 75 ETAKAFADEI----GIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 75 ~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+++..+.+.. +++++++||++|.|++++++.+...+..
T Consensus 126 ~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 126 MFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred HHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 3344444443 4689999999999999999988877654
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.51 E-value=1.3e-13 Score=108.16 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=72.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
.||||||+++|..++...+..+|++++|+|+++....... ..+..... .+.|+++++||+|+... ..+.....
T Consensus 138 ~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~-e~i~~~~~---~~vPiIVviNKiDl~~~---~~e~v~~~ 210 (587)
T TIGR00487 138 TFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTI-EAISHAKA---ANVPIIVAINKIDKPEA---NPDRVKQE 210 (587)
T ss_pred EEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcccccC---CHHHHHHH
Confidence 4899999999999999999999999999998863211111 11222221 25899999999998532 23333333
Q ss_pred HHHcC---------CcEEEeecCCCCCHHHHHHHHHH
Q 032243 81 ADEIG---------IPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 81 ~~~~~---------~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
+...+ .+++++||++|.|+.++++++..
T Consensus 211 L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 211 LSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 32222 47999999999999999999864
No 172
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.51 E-value=6.6e-14 Score=107.10 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=73.4
Q ss_pred CceeccchhHHhhh--------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRTI--------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||+|.+++... ...++.++|++++|+|++++.++.+...|.. ....|+++|+||+|+.+....
T Consensus 266 ~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~ 339 (449)
T PRK05291 266 RLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDL 339 (449)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchh
Confidence 48999998654322 2346889999999999998877765443332 235899999999998643222
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
. ...+.+++++||++|.|+++++++|.+.+..
T Consensus 340 ~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 340 E--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred h--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 1 2345689999999999999999999998854
No 173
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.51 E-value=1.2e-13 Score=90.74 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=71.0
Q ss_pred CceeccchhHHhh--------hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRT--------ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||||...+.. ....++.++|++++|+|++++.+......+.. ....|+++++||+|+.+....
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~ 125 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL 125 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc
Confidence 4899999654321 23345779999999999998766665443322 235899999999998654332
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.....+.+++++||+++.|+++++++|...+
T Consensus 126 -------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 -------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 2333456899999999999999999988764
No 174
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.51 E-value=1.5e-13 Score=104.88 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=76.6
Q ss_pred CceeccchhHHhhh--------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRTI--------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||||+.++... ...+++++|++++|||++++.+++.. |+..+.. ...|+++|+||.|+...
T Consensus 254 ~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~--- 325 (442)
T TIGR00450 254 KLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN--- 325 (442)
T ss_pred EEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc---
Confidence 48999998554322 34678899999999999988777664 5554432 25799999999998532
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+...+....+.+++.+||++ .|++++|+.+...+....
T Consensus 326 ---~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 326 ---SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred ---chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 12234556677899999998 699999999999887654
No 175
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.50 E-value=1e-13 Score=109.03 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=76.0
Q ss_pred CceeccchhHHhhh------hhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRTI------TSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~~------~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||||+.++... .+.++ +++|++++|+|.++.+. ...+...+.. .+.|+++++||.|+.+...+
T Consensus 44 ~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i 117 (591)
T TIGR00437 44 EIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGI 117 (591)
T ss_pred EEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCC
Confidence 48999999876543 45554 37999999999987432 1222222222 35899999999998654444
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
. .+...+.+..+.+++++||++|.|++++++.+.+..
T Consensus 118 ~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 118 R-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred h-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 2 345677888899999999999999999999998764
No 176
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=1.5e-13 Score=105.91 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=72.7
Q ss_pred Cceeccchh--------HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQE--------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
+||||||.+ .+...+..+++.+|++|||+|+++..++.+ ..+...+.. ...|+++|+||+|+....
T Consensus 89 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~-- 162 (472)
T PRK03003 89 TVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE-- 162 (472)
T ss_pred EEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc--
Confidence 479999975 355556778899999999999998655432 233333332 258999999999985321
Q ss_pred CHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 73 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
... ..+. ..++ ..+++||++|.|++++|++|+..+..
T Consensus 163 -~~~-~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 163 -ADA-AALW-SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred -hhh-HHHH-hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 111 1121 3343 45799999999999999999988743
No 177
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.49 E-value=3.6e-13 Score=92.01 Aligned_cols=105 Identities=24% Similarity=0.289 Sum_probs=73.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH--
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK-- 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-- 78 (144)
.|+||||+..|.......+..+|++|+|+|+.+..... ....+...... +.|+++++||+|+.. ... .+...
T Consensus 73 ~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~-~~~-~~~~~~~ 146 (188)
T PF00009_consen 73 TLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIE-KEL-EEIIEEI 146 (188)
T ss_dssp EEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSH-HHH-HHHHHHH
T ss_pred eecccccccceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchh-hhH-HHHHHHH
Confidence 37999999999998888899999999999998653322 22333333333 488999999999862 111 11111
Q ss_pred --HHHHHcC------CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 79 --AFADEIG------IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 79 --~~~~~~~------~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.+.+..+ .+++++||.+|.|+.++++.|.+.+.
T Consensus 147 ~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 147 KEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 2323332 47999999999999999999988753
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.49 E-value=3e-13 Score=108.02 Aligned_cols=100 Identities=23% Similarity=0.312 Sum_probs=74.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
.||||||++.|..++..++..+|++|+|+|+++. .+++.+ ..+. ....|+++++||+|+.... ....
T Consensus 298 tfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I----~~~k---~~~iPiIVViNKiDl~~~~---~e~v 367 (742)
T CHL00189 298 VFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI----NYIQ---AANVPIIVAINKIDKANAN---TERI 367 (742)
T ss_pred EEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH----HHHH---hcCceEEEEEECCCccccC---HHHH
Confidence 4899999999999999999999999999998873 333322 2222 2358999999999985422 2222
Q ss_pred HHH-------HHHcC--CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 78 KAF-------ADEIG--IPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 78 ~~~-------~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
... ...++ ++++++||++|.|++++++.|....
T Consensus 368 ~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 368 KQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 211 12233 6899999999999999999988764
No 179
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.49 E-value=2e-13 Score=103.38 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=74.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~ 78 (144)
+||||||+++|...+...+..+|++++|+|+++..........+..+.... ..|+++++||+|+.+.... ..+++.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 489999999999888888889999999999986321111222222222221 2468999999998643221 112333
Q ss_pred HHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 79 AFADEI---GIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 79 ~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.+.... +++++++||++|.|++++++.|...+
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 333332 46899999999999999999998765
No 180
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.49 E-value=4.9e-13 Score=104.92 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=72.6
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc------
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV------ 72 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~------ 72 (144)
||||||++.|..++..++..+|++++|+|+++ +.+++.+. .+.. ...|+++++||+|+.+....
T Consensus 73 ~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f 145 (590)
T TIGR00491 73 FIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPF 145 (590)
T ss_pred EEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchH
Confidence 79999999999999999999999999999987 44544332 2222 25899999999998532100
Q ss_pred ------CHHH------------HHHHHH------------Hc--CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 73 ------SYET------------AKAFAD------------EI--GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 73 ------~~~~------------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.... ..++.+ .+ ..+++++||++|+|++++++++.....
T Consensus 146 ~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 146 MESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0000 001111 11 258999999999999999998876543
No 181
>PRK11058 GTPase HflX; Provisional
Probab=99.49 E-value=5e-13 Score=101.55 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=73.9
Q ss_pred CceeccchhHH--hhhhh------hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERF--RTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~--~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
.||||+|..+. ..++. ..+.++|++++|+|++++.++..+..|...+......+.|+++|+||+|+.....
T Consensus 248 ~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~- 326 (426)
T PRK11058 248 VLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE- 326 (426)
T ss_pred EEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh-
Confidence 38999998431 12222 3367899999999999988777765444444433334689999999999854211
Q ss_pred CHHHHHHHHHHcCCc-EEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.... . ...+.+ ++.+||++|.|+++++++|...+..
T Consensus 327 --~~~~-~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 327 --PRID-R-DEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred --HHHH-H-HhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 1111 1 123444 4889999999999999999998853
No 182
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=8.9e-13 Score=99.16 Aligned_cols=111 Identities=21% Similarity=0.279 Sum_probs=79.9
Q ss_pred CceeccchhH-------HhhhhhhhhcCCCEEEEEEeCC---CHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQER-------FRTITSSYYRGAHGIIIVYDVT---DQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 68 (144)
.|+||||..+ .......+++++|++++|+|++ +.+++.++..|+..+..+.. ...|+++|+||+|+..
T Consensus 210 ~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 210 VVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred EEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 3799999743 1111223578999999999988 45567777777777766532 2589999999999864
Q ss_pred CcccCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 69 NKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 69 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
...+ .+.+..+.+..+ .+++++||+++.|++++++.|...+..
T Consensus 290 ~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 290 EEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred hHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 3332 233344444444 378999999999999999999998864
No 183
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.46 E-value=2.5e-13 Score=103.48 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=68.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHH--HHHhcCCCCcEEEEEeCCCCCCCcc----cCH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE--IDRYASDNVNKLLVGNKCDLTANKV----VSY 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~--~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~ 74 (144)
+||||||+++|.......+..+|++++|+|+++..++.. ..+... +.... ...++++++||+|+.+... ...
T Consensus 88 ~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~~~~ 165 (426)
T TIGR00483 88 TIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFEAIK 165 (426)
T ss_pred EEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHHHHH
Confidence 489999999998777777889999999999988643311 111111 12222 2357899999999853211 112
Q ss_pred HHHHHHHHHcC-----CcEEEeecCCCCCHHHHH
Q 032243 75 ETAKAFADEIG-----IPFMETSAKDSTNVEQAF 103 (144)
Q Consensus 75 ~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~ 103 (144)
.++..+++..+ ++++++||++|.|+.+++
T Consensus 166 ~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 166 KEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 34455565554 579999999999998744
No 184
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.46 E-value=5.2e-13 Score=101.23 Aligned_cols=108 Identities=24% Similarity=0.276 Sum_probs=71.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~ 77 (144)
+||||||+++|..........+|++++|+|+++.. .... ...+..+.... ..|+++++||+|+.+..... .++.
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~~~i 164 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDIIG--IKNIVIVQNKIDLVSKERALENYEQI 164 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHHcC--CCcEEEEEEeeccccchhHHHHHHHH
Confidence 48999999998876555566789999999998532 1111 11122222221 24689999999986532211 1223
Q ss_pred HHHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 78 KAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 78 ~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
..+.... +.+++++||++|.|++++++.|...+.
T Consensus 165 ~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 165 KEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 3333321 468999999999999999999887653
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.46 E-value=4.6e-13 Score=107.73 Aligned_cols=99 Identities=20% Similarity=0.291 Sum_probs=72.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
.||||||++.|..++...+..+|++|||+|+++. .+++. +..... ..+|+++++||+|+.... ....
T Consensus 340 tfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~----i~~a~~---~~vPiIVviNKiDl~~a~---~e~V 409 (787)
T PRK05306 340 TFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA----INHAKA---AGVPIIVAINKIDKPGAN---PDRV 409 (787)
T ss_pred EEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH----HHHHHh---cCCcEEEEEECccccccC---HHHH
Confidence 4899999999999999999999999999999873 33332 122222 258999999999985321 1221
Q ss_pred HH-------HHHHcC--CcEEEeecCCCCCHHHHHHHHHHH
Q 032243 78 KA-------FADEIG--IPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 78 ~~-------~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.. +.+.++ ++++++||++|.|++++|+.|...
T Consensus 410 ~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 410 KQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 11 122233 689999999999999999998754
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.45 E-value=5.6e-13 Score=87.19 Aligned_cols=105 Identities=20% Similarity=0.181 Sum_probs=72.8
Q ss_pred CceeccchhHHh-------hhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243 1 MQWDTAGQERFR-------TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 73 (144)
Q Consensus 1 qi~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 73 (144)
.+|||+|...+. ..+..++..+|++++|+|.++..+..... +...... ...|+++++||.|+.......
T Consensus 48 ~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~ 123 (163)
T cd00880 48 VLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEE 123 (163)
T ss_pred EEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHH
Confidence 379999976543 34455788999999999999876655443 2333322 358999999999986543221
Q ss_pred HHH---HHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 74 YET---AKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 74 ~~~---~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
... ........+.+++++||.++.|++++++++...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 124 ELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 110 111222334689999999999999999998765
No 187
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.43 E-value=1.8e-12 Score=102.41 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=72.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC--H
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS--Y 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~--~ 74 (144)
+||||||+++|...+...+.++|++++|+|+++. .+.+- +..+... ..| +++|+||+|+.+..... .
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~eh----l~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~ 126 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREH----LAILQLT---GNPMLTVALTKADRVDEARIAEVR 126 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHH----HHHHHHc---CCCeEEEEEECCccCCHHHHHHHH
Confidence 4899999999988877889999999999998863 23222 2222221 245 57999999986432221 1
Q ss_pred HHHHHHHHHcC---CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 75 ETAKAFADEIG---IPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 75 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.++..+....+ .+++++||++|.|++++++.|....
T Consensus 127 ~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 127 RQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred HHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 23344444444 5899999999999999999988654
No 188
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.42 E-value=3.5e-13 Score=85.24 Aligned_cols=64 Identities=38% Similarity=0.660 Sum_probs=53.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQW---LNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ilv~nK~D 65 (144)
++||++|++.+...+..++.++|++++|||++++.+|+.+..+ +..+.... .++|+++|+||.|
T Consensus 53 ~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 53 QFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 4899999999999888889999999999999999999987554 55554433 3599999999998
No 189
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.41 E-value=3.5e-12 Score=87.22 Aligned_cols=107 Identities=14% Similarity=0.160 Sum_probs=71.0
Q ss_pred Cceeccc----------hhHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAG----------QERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+|||||| ++++..+...++.. .+++++++|.+++.+..+. .+...+ .. ...|+++++||.|+.
T Consensus 73 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~--~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 73 RLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE--YGIPVLIVLTKADKL 148 (196)
T ss_pred EEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH--cCCcEEEEEECcccC
Confidence 4799999 45676777777764 4688899998765333221 111122 21 257899999999986
Q ss_pred CCcccC--HHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 68 ANKVVS--YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 68 ~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
...... ...+.........+++++||+++.|++++++.|...+.
T Consensus 149 ~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 149 KKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 543221 11222333333578999999999999999999988775
No 190
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.40 E-value=6.5e-12 Score=83.68 Aligned_cols=105 Identities=22% Similarity=0.225 Sum_probs=69.0
Q ss_pred CceeccchhHH----------hhh-hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERF----------RTI-TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~----------~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
.+|||||..+. ..+ ...++.++|++++|+|.+++.+.... .++..... ...|+++++||+|+.+.
T Consensus 53 ~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 53 TLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEK 128 (174)
T ss_pred EEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCc
Confidence 37999996322 211 13356789999999999887665443 22222222 24899999999998654
Q ss_pred cccCHHHH-HHHHHHc----CCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 70 KVVSYETA-KAFADEI----GIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 70 ~~~~~~~~-~~~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
........ ..+.+.. ..+++++||+++.|++++++.+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 129 DSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 31212222 2222333 2589999999999999999988764
No 191
>PRK00089 era GTPase Era; Reviewed
Probab=99.40 E-value=3.9e-12 Score=92.44 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=70.8
Q ss_pred ceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243 2 QWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 73 (144)
Q Consensus 2 i~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 73 (144)
||||||... +.......+.++|++++|+|+++..+- .....+..+.. ...|+++|+||+|+.......
T Consensus 57 ~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l 132 (292)
T PRK00089 57 FVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVKDKEEL 132 (292)
T ss_pred EEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHH
Confidence 799999632 233445567899999999999873111 11222222221 247999999999996332221
Q ss_pred HHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 74 YETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 74 ~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
......+.+..+ .+++++||+++.|++++++++.+.+.
T Consensus 133 ~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 133 LPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 233344444344 58999999999999999999988764
No 192
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.39 E-value=2.5e-12 Score=101.27 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=78.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc-CHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~ 79 (144)
+||||||+.+|...+..++..+|++++|+|+.+. .......|+...... ..|+++++||+|+...+.. ...+...
T Consensus 67 nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~ 142 (594)
T TIGR01394 67 NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFD 142 (594)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHH
Confidence 4899999999999999999999999999999763 233445555555443 4889999999998543211 1223333
Q ss_pred HHH-------HcCCcEEEeecCCCC----------CHHHHHHHHHHHHH
Q 032243 80 FAD-------EIGIPFMETSAKDST----------NVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~-------~~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~ 111 (144)
+.. ...++++++||++|. |+..+|+.|.+.+.
T Consensus 143 l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 143 LFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 332 234689999999995 79999998888764
No 193
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=4e-12 Score=97.06 Aligned_cols=98 Identities=22% Similarity=0.203 Sum_probs=69.1
Q ss_pred CceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 032243 1 MQWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 70 (144)
Q Consensus 1 qi~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 70 (144)
++|||||+.. +......++..+|+++||+|.++..+.. .+..|+... ..|+++++||+|+...
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~- 124 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDE- 124 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccc-
Confidence 4899999876 3344566788999999999998753322 233333321 5899999999997431
Q ss_pred ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243 71 VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
......+ ...++ .++++||++|.|+.++++.+...
T Consensus 125 ---~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 125 ---EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred ---hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhh
Confidence 1222222 34565 48999999999999999999873
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=3.1e-12 Score=102.89 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=74.2
Q ss_pred Cceeccchh----------HHhhhh-hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQE----------RFRTIT-SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~----------~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
.||||||.. .|..+. ..+++++|++++|+|+++..++.+.. ++..+.. ...|+++|+||+|+.+.
T Consensus 501 ~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 501 LFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDE 576 (712)
T ss_pred EEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCCh
Confidence 379999953 233222 34478999999999999877776654 3333332 25899999999999643
Q ss_pred cccCHHHHHHHH-HHc----CCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 70 KVVSYETAKAFA-DEI----GIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 70 ~~~~~~~~~~~~-~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
.. .+...... ... ..+++++||++|.|++++++.+...+......
T Consensus 577 ~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~ 626 (712)
T PRK09518 577 FR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQR 626 (712)
T ss_pred hH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 21 11222111 121 23779999999999999999999988754433
No 195
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.39 E-value=5.5e-12 Score=83.32 Aligned_cols=104 Identities=17% Similarity=0.135 Sum_probs=69.5
Q ss_pred ceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243 2 QWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 73 (144)
Q Consensus 2 i~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 73 (144)
+|||||... +.......+..+|++++|+|++++.... ...+...+... ..|+++++||.|+.......
T Consensus 55 liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~ 130 (168)
T cd04163 55 FVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS---KTPVILVLNKIDLVKDKEDL 130 (168)
T ss_pred EEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh---CCCEEEEEEchhccccHHHH
Confidence 899999643 3334456688899999999998862111 12222333222 47999999999986322221
Q ss_pred HHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHH
Q 032243 74 YETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 74 ~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
......+....+ .+++++|++++.|++++++.|.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 131 LPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 233333333343 589999999999999999998764
No 196
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.36 E-value=9e-12 Score=94.93 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=72.8
Q ss_pred Cceeccch--------hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQ--------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~--------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||||. ..+......+++.+|+++||+|..+..+..+ ..+...++.. ..|+++|+||+|+......
T Consensus 50 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~~ 125 (429)
T TIGR03594 50 ILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDAV 125 (429)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCccccc
Confidence 48999995 5566667778899999999999987433322 1122222222 5899999999998643321
Q ss_pred CHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 73 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.. ....+++ +++++||..|.|+.++++.+...+.
T Consensus 126 ----~~-~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 126 ----AA-EFYSLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred ----HH-HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 11 2335566 7999999999999999999987763
No 197
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.36 E-value=1.2e-12 Score=86.65 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=65.5
Q ss_pred Cceeccchh------HHhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQE------RFRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~------~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
+|+|+||.- ........++ ++.|++++|+|+++.+ .-..+...+... ..|+++++||+|+..++.+
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~ 123 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGI 123 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTE
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCC
Confidence 378999942 2234455555 6899999999998642 222233333333 5899999999998544333
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 106 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 106 (144)
. .+...+.+.+++|++++||+++.|++++++.|
T Consensus 124 ~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 124 E-IDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp E-E-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred E-ECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 2 23556777889999999999999999999865
No 198
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.35 E-value=1.7e-11 Score=96.46 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=71.7
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc----CH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV----SY 74 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~ 74 (144)
||||||++.|..++...+..+|++++|+|+++ +.++..+.. +.. ...|+++++||+|+...... ..
T Consensus 75 ~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~ 147 (586)
T PRK04004 75 FIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPF 147 (586)
T ss_pred EEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchH
Confidence 79999999999999988999999999999987 555554322 222 25899999999998421100 00
Q ss_pred --------H-----------HHHHHHHHc---------------CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 75 --------E-----------TAKAFADEI---------------GIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 75 --------~-----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
. +........ .++++++||.+|.|+.++++.+...+
T Consensus 148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0 011111111 24789999999999999999886544
No 199
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.35 E-value=8.1e-12 Score=86.68 Aligned_cols=99 Identities=22% Similarity=0.193 Sum_probs=64.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc----CHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV----SYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~ 76 (144)
.||||||+++|...+...+..+|++++|+|+++...-. ....+..+.... ..++++++||+|+...... ...+
T Consensus 80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 37999999998777777789999999999998643111 112122222211 2457789999998542211 0123
Q ss_pred HHHHHHHcCC---cEEEeecCCCCCHHHH
Q 032243 77 AKAFADEIGI---PFMETSAKDSTNVEQA 102 (144)
Q Consensus 77 ~~~~~~~~~~---~~~~~Sa~~~~~i~~l 102 (144)
...+.+..+. +++++||++|.|+.+.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3444555553 5899999999999753
No 200
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=7e-12 Score=95.73 Aligned_cols=109 Identities=22% Similarity=0.231 Sum_probs=71.5
Q ss_pred CceeccchhH----------Hhhh-hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQER----------FRTI-TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~----------~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
.+|||||..+ |..+ ...++.++|++++|+|+++..+..+. .++..+.. ...|+++++||+|+.+.
T Consensus 224 ~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 224 TLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDE 299 (435)
T ss_pred EEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCH
Confidence 3799999532 2211 23467899999999999987655543 22333322 24899999999998633
Q ss_pred cccCHHHHHHHHHHc----CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 70 KVVSYETAKAFADEI----GIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 70 ~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
... ......+...+ ..+++++||++|.|++++++.+........
T Consensus 300 ~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 300 KTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred HHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 211 11111111221 368999999999999999999888765443
No 201
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=6.3e-13 Score=88.99 Aligned_cols=108 Identities=33% Similarity=0.583 Sum_probs=92.9
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
.|||+|++.+..+...|+-..-.++++||.+..-++..+..|...+..... ++|+++.|||.|..... + ......+.
T Consensus 63 ~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~-~-k~k~v~~~ 139 (216)
T KOG0096|consen 63 VWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK-V-KAKPVSFH 139 (216)
T ss_pred eeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc-c-ccccceee
Confidence 699999999999999999999999999999999999999999999987775 58999999999985433 1 23333456
Q ss_pred HHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 82 DEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 82 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+..++.+++.||+++.|.+.-|-++++.+..
T Consensus 140 rkknl~y~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 140 RKKNLQYYEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred ecccceeEEeecccccccccchHHHhhhhcC
Confidence 6667899999999999999999999999864
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.34 E-value=3.4e-12 Score=97.29 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=66.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc----cCHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN-NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV----VSYE 75 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~ 75 (144)
.||||||+++|.......+..+|++++|+|++++..+. .....+....... ..|+++++||+|+..... ...+
T Consensus 87 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~~ 164 (425)
T PRK12317 87 TIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKRYEEVKE 164 (425)
T ss_pred EEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHHHHHHHH
Confidence 48999999988776656678999999999998731111 1112222222221 246899999999864211 1123
Q ss_pred HHHHHHHHcC-----CcEEEeecCCCCCHHHHHH
Q 032243 76 TAKAFADEIG-----IPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 76 ~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 104 (144)
++..+++..+ ++++++||++|.|++++.+
T Consensus 165 ~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 165 EVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 4444554444 4799999999999987543
No 203
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.33 E-value=3.6e-11 Score=99.12 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=71.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH---
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--- 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--- 74 (144)
.||||||++.|..+....+..+|++++|+|+++ +.++..+. .+... +.|+++++||+|+.+......
T Consensus 529 ~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~~---~iPiIVViNKiDL~~~~~~~~~~~ 601 (1049)
T PRK14845 529 LFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQY---KTPFVVAANKIDLIPGWNISEDEP 601 (1049)
T ss_pred EEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHHc---CCCEEEEEECCCCccccccccchh
Confidence 389999999999888888889999999999986 44444332 22222 479999999999853211100
Q ss_pred ---------HHH-HH-------H---HHH-------------c--CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 75 ---------ETA-KA-------F---ADE-------------I--GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 75 ---------~~~-~~-------~---~~~-------------~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.. .+ + ... + ..+++++||++|+|++++++.|.....
T Consensus 602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 000 00 0 011 1 248999999999999999988765543
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.33 E-value=1.3e-11 Score=99.39 Aligned_cols=102 Identities=21% Similarity=0.149 Sum_probs=70.3
Q ss_pred CceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
++|||||.+. +......+++.+|++|||+|+++.- .... .|...+.. .+.|+++|+||+|+....
T Consensus 326 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~- 399 (712)
T PRK09518 326 KLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE- 399 (712)
T ss_pred EEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch-
Confidence 4899999753 4455667789999999999997632 1222 33333432 258999999999985321
Q ss_pred cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 72 VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.....+. ..++ ..+++||++|.|+.+++++|...+..
T Consensus 400 ---~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 400 ---YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ---hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 1112222 2333 56899999999999999999988743
No 205
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.32 E-value=1.4e-11 Score=85.23 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=56.6
Q ss_pred CceeccchhHHhhhhhhhhcCC-CEEEEEEeCCCH-HHHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGA-HGIIIVYDVTDQ-ESFNNVKQWLNEIDRY---ASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~ 69 (144)
++|||||+.+++..+..++.++ +++|||+|+.+. .++.++..|+..+... .....|+++++||+|+...
T Consensus 51 ~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 51 RLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 4899999999999999999998 999999999987 6777777766655332 1246999999999998643
No 206
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.31 E-value=5.3e-12 Score=88.28 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=63.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--cc
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~ 72 (144)
+||||||+.+|...+...+..+|++++|+|+++... |. .....+...... ...|+++++||+|+.... ..
T Consensus 80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHH
Confidence 489999999888877777889999999999987410 11 111212222211 236889999999986321 10
Q ss_pred C----HHHHHHHHHHcC-----CcEEEeecCCCCCHH
Q 032243 73 S----YETAKAFADEIG-----IPFMETSAKDSTNVE 100 (144)
Q Consensus 73 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 100 (144)
. .+++..+....+ ++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 0 112222333433 579999999999987
No 207
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.31 E-value=4.8e-11 Score=83.75 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=66.8
Q ss_pred ceeccchhHHhhhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHH
Q 032243 2 QWDTAGQERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~ 77 (144)
|.||||+++|.......+. .+|++++|+|++.... .....++..+... ..|+++++||+|+.+..... ..++
T Consensus 88 liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~~~~~~~l 163 (224)
T cd04165 88 FIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANILQETLKDL 163 (224)
T ss_pred EEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHHHHHHHHH
Confidence 6899999998765544453 6899999999876432 1122333333322 48999999999986432221 1112
Q ss_pred HHHHHH------------------------c--CCcEEEeecCCCCCHHHHHHHHHH
Q 032243 78 KAFADE------------------------I--GIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 78 ~~~~~~------------------------~--~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
..+... . ..++|.+||.+|.|++++.+.|..
T Consensus 164 ~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 164 KRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222210 0 138999999999999999987643
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.30 E-value=2.5e-11 Score=95.72 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=74.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc-CHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~ 79 (144)
+||||||+.+|...+..++..+|++++|+|+++.... ....++...... ..|.++++||+|+...... ..+++..
T Consensus 71 nliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~---gip~IVviNKiD~~~a~~~~vl~ei~~ 146 (607)
T PRK10218 71 NIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY---GLKPIVVINKVDRPGARPDWVVDQVFD 146 (607)
T ss_pred EEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc---CCCEEEEEECcCCCCCchhHHHHHHHH
Confidence 4899999999999999999999999999999864222 223333333332 5789999999998542211 1223333
Q ss_pred HHHH-------cCCcEEEeecCCCC----------CHHHHHHHHHHHHH
Q 032243 80 FADE-------IGIPFMETSAKDST----------NVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~~-------~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~ 111 (144)
+... ..++++.+||.+|. |+..+++.|.+.+.
T Consensus 147 l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 147 LFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred HHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 3221 24689999999998 57788887777663
No 209
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.30 E-value=1.5e-11 Score=83.33 Aligned_cols=96 Identities=15% Similarity=0.210 Sum_probs=62.0
Q ss_pred Cceeccch----------hHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQ----------ERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~----------~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
++|||||. ..|..+...|+.. +|++++|+|.++.-+..+. .++..+.. ...|+++++||+|+.
T Consensus 67 ~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 67 RLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKL 142 (179)
T ss_pred EEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccC
Confidence 47999993 4566666666653 6899999999875443333 22222322 258999999999986
Q ss_pred CCccc--CHHHHHHHHHHcC--CcEEEeecCCCCCHH
Q 032243 68 ANKVV--SYETAKAFADEIG--IPFMETSAKDSTNVE 100 (144)
Q Consensus 68 ~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~ 100 (144)
..... ..+++.......+ ++++++||++|+|++
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 143 KKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 43221 1223333343333 489999999999973
No 210
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.28 E-value=4.1e-11 Score=77.90 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=72.2
Q ss_pred Cceeccch----hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHH
Q 032243 1 MQWDTAGQ----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET 76 (144)
Q Consensus 1 qi~Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 76 (144)
+++||||- .+|....-....++|.+++|.|.+++.+.-. ..+.... ..|+|-|+||+|+.. .....+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~-~~~~i~~ 110 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPS-DDANIER 110 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhccc--CCCEEEEEECccCcc-chhhHHH
Confidence 36899994 4566555566679999999999998642211 1111112 479999999999963 2334566
Q ss_pred HHHHHHHcCC-cEEEeecCCCCCHHHHHHHHH
Q 032243 77 AKAFADEIGI-PFMETSAKDSTNVEQAFMAMA 107 (144)
Q Consensus 77 ~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~ 107 (144)
+.++.+..|+ .+|++|+.+|+|+++|.+.|.
T Consensus 111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 7778888886 789999999999999999874
No 211
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.27 E-value=4.4e-11 Score=79.30 Aligned_cols=95 Identities=21% Similarity=0.244 Sum_probs=65.8
Q ss_pred HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEE
Q 032243 11 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME 90 (144)
Q Consensus 11 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (144)
|++++++.++++|++++|+|++++....+ ..+...+. . ...|+++++||+|+.+.... .....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~-~--~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL-E--LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH-h--CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 56788898999999999999987543222 12222221 1 24799999999998532211 1111233345678999
Q ss_pred eecCCCCCHHHHHHHHHHHHH
Q 032243 91 TSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 91 ~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+||+++.|++++++.+...+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999988765
No 212
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.27 E-value=5.5e-11 Score=87.45 Aligned_cols=114 Identities=24% Similarity=0.229 Sum_probs=80.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 69 (144)
.+||+|||...+..|.++++++++++||+|+++. ..+.+....+..+..... .+.|++|++||.|+..+
T Consensus 164 ~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ 243 (317)
T cd00066 164 RMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEE 243 (317)
T ss_pred EEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHH
Confidence 3799999999999999999999999999999874 334444444444433221 46899999999997421
Q ss_pred c----------------ccCHHHHHHHHHH----------cCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 70 K----------------VVSYETAKAFADE----------IGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 70 ~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+ ....+.+..+... ..+..+.++|.+..++..+|+.+.+.+....
T Consensus 244 ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 244 KIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred hhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 1 1223444334322 1235578899999999999999999887643
No 213
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.2e-10 Score=88.82 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=75.4
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
|.||||++-|..|+..=..=+|.+++|+|++| +.+.+. +.+....++|+++.+||+|..+. +.....
T Consensus 59 FiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~~~---np~~v~ 128 (509)
T COG0532 59 FIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKPEA---NPDKVK 128 (509)
T ss_pred EEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCCCC---CHHHHH
Confidence 68999999999998888888999999999987 333332 32323336999999999998632 233333
Q ss_pred HHHHHcC---------CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 79 AFADEIG---------IPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 79 ~~~~~~~---------~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.-....+ ..++++||++|+|+.+|++.+.......
T Consensus 129 ~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 129 QELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred HHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 3333333 3689999999999999999887766533
No 214
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.26 E-value=7.5e-11 Score=80.66 Aligned_cols=94 Identities=23% Similarity=0.257 Sum_probs=65.3
Q ss_pred HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcC
Q 032243 11 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIG 85 (144)
Q Consensus 11 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 85 (144)
|..++..+++++|++++|+|+++.... |...+.... ...|+++|+||+|+.+... .......+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 577889999999999999999875411 111121111 2579999999999865332 233333333 2233
Q ss_pred C---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 86 I---PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 86 ~---~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
. .++++||++|.|++++++.|...+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 6899999999999999999988763
No 215
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.25 E-value=6.7e-11 Score=95.59 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=76.2
Q ss_pred CceeccchhHHhh----------hhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRT----------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~----------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
++|||||..++.. ..+.++ +.+|++++|+|.++.+. ...+...+... ..|+++++||.|+.+
T Consensus 53 ~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~---giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 53 TLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLEL---GIPCIVALNMLDIAE 126 (772)
T ss_pred EEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHHc---CCCEEEEEEchhhhh
Confidence 4899999876542 133443 47999999999987432 22333444332 589999999999865
Q ss_pred CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.+.+ ..+...+.+.++.+++++||.++.|++++++.+....
T Consensus 127 ~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 127 KQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 4444 3456677888899999999999999999999888765
No 216
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.25 E-value=9.4e-11 Score=89.86 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=71.3
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKA 79 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~ 79 (144)
|+||||+++|...+..-+..+|++++|+|+++...-....+.+....... -.++++++||+|+.+..... .+++..
T Consensus 121 ~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~~~~~~ei~~ 198 (460)
T PTZ00327 121 FVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQAQDQYEEIRN 198 (460)
T ss_pred eeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHHHHHHHHHHH
Confidence 78999999998877777889999999999986311111122222222121 24689999999986432211 112222
Q ss_pred HHHH---cCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 80 FADE---IGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 80 ~~~~---~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+... ...+++++||.+|.|++.|++.|...+
T Consensus 199 ~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 199 FVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 2222 246899999999999999999888654
No 217
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.24 E-value=1.2e-10 Score=82.45 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=49.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+||||||+.+|...+..+++.+|++++|+|.++.... ....++..+... ..|+++++||+|+.
T Consensus 67 ~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 67 NLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred EEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 4899999999999899999999999999999875332 234444444333 58999999999985
No 218
>PRK12289 GTPase RsgA; Reviewed
Probab=99.22 E-value=7.4e-11 Score=87.66 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=69.6
Q ss_pred HHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcE
Q 032243 10 RFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPF 88 (144)
Q Consensus 10 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (144)
|-+.+.+..+.++|.+++|+|+.++. .+..+..|+..... ..+|+++|+||+||.+... ..........+++++
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v 152 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQP 152 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeE
Confidence 33445667789999999999998765 44456777765533 2589999999999964322 122233345678899
Q ss_pred EEeecCCCCCHHHHHHHHHHH
Q 032243 89 METSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 89 ~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+.+||.++.|++++++.+...
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEcCCCCCHHHHhhhhccc
Confidence 999999999999999988654
No 219
>COG1159 Era GTPase [General function prediction only]
Probab=99.22 E-value=2e-10 Score=82.25 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=71.8
Q ss_pred ceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243 2 QWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 73 (144)
Q Consensus 2 i~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 73 (144)
|.||||.-+ +.......+.++|+++||+|+++...-.+ ...+..+.. ...|+++++||+|...+....
T Consensus 58 fvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~~~l 133 (298)
T COG1159 58 FVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPKTVL 133 (298)
T ss_pred EEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcHHHH
Confidence 689999532 34445566789999999999987422211 223333333 247999999999986654421
Q ss_pred HHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 74 YETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 74 ~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
......+..... ..++++||+.|.|++.+.+.+...+.+
T Consensus 134 ~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 134 LKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 222222222333 389999999999999999999888753
No 220
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.21 E-value=2.3e-10 Score=84.89 Aligned_cols=114 Identities=24% Similarity=0.256 Sum_probs=80.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 69 (144)
.+||+||+..+++.|.+|++++++++||+|+++. ..+.+....+..+.... -.+.|++|++||.|+...
T Consensus 187 ~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~ 266 (342)
T smart00275 187 RMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEE 266 (342)
T ss_pred EEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHH
Confidence 3799999999999999999999999999999974 23444444444443321 246899999999998421
Q ss_pred c---------------ccCHHHHHHHHHH-----------cCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 70 K---------------VVSYETAKAFADE-----------IGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 70 ~---------------~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+ ......+..+... ..+..+.++|.+-.++..+|+.+.+.+.+..
T Consensus 267 Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 267 KIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 1 0122333333221 1135678899999999999999998887654
No 221
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.20 E-value=1.2e-10 Score=81.63 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=48.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+||||||+.+|......++..+|++++|+|+.+...... ...+..... ...|+++++||+|+.
T Consensus 76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence 479999999999999999999999999999987654443 222222222 247999999999974
No 222
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.2e-10 Score=89.04 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=76.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH-H
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK-A 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~ 79 (144)
+++||||+-.|.--....+.-++++++|+|++.-..-..+.+++-.+. .+.-+|.|+||+|+...+ .+... +
T Consensus 128 NLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~ad---pe~V~~q 200 (650)
T KOG0462|consen 128 NLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSAD---PERVENQ 200 (650)
T ss_pred EeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCC---HHHHHHH
Confidence 579999999998877788889999999999986544444444333332 246789999999996433 22222 2
Q ss_pred HHHHcC---CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FADEIG---IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.+.++ .+++.+||++|.|++++++.|++.+.
T Consensus 201 ~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 201 LFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred HHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 233333 48999999999999999999998874
No 223
>PRK13768 GTPase; Provisional
Probab=99.20 E-value=1.8e-10 Score=82.30 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=69.0
Q ss_pred ceeccchhHH---hhhhhhhhcC-----CCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 2 QWDTAGQERF---RTITSSYYRG-----AHGIIIVYDVTDQESFNNVK--QWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 2 i~Dt~G~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
+|||||+.++ +..++.+++. .+++++|+|+....+..++. .|+...... ....|+++|+||+|+.+..+
T Consensus 101 ~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~~~~ 179 (253)
T PRK13768 101 LVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLSEEE 179 (253)
T ss_pred EEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcCchh
Confidence 7999998763 4444444433 89999999996543333322 222222111 12589999999999865433
Q ss_pred cCHHHHHH----------------------------HHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 72 VSYETAKA----------------------------FADEIG--IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 72 ~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
. +.... ..+..+ .+++++|++++.|+++++++|.+.+.
T Consensus 180 ~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 180 L--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred H--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 2 11111 122334 48899999999999999999988763
No 224
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.20 E-value=3.3e-10 Score=80.01 Aligned_cols=50 Identities=22% Similarity=0.156 Sum_probs=38.8
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
..|+++|+||+|+.+ ..+...++. ...++++||+++.|++++|+.+.+.+
T Consensus 176 y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 176 YIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 369999999999853 333333433 34689999999999999999998865
No 225
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.20 E-value=2.3e-10 Score=75.74 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=67.3
Q ss_pred Cceeccc----------hhHHhhhhhhhhc---CCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 1 MQWDTAG----------QERFRTITSSYYR---GAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 1 qi~Dt~G----------~~~~~~~~~~~~~---~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
.+|||+| ++.+...+..|+. +.+++++++|.++.. ....+..|+... ..|+++++||.|
T Consensus 48 ~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D 121 (170)
T cd01876 48 RLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKAD 121 (170)
T ss_pred EEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchh
Confidence 3799998 3446666666664 467899999987652 222233333332 479999999999
Q ss_pred CCCCcccC--HHHHHHHHH--HcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 66 LTANKVVS--YETAKAFAD--EIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 66 l~~~~~~~--~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+..+.... ........+ ....+++++||+++.|+.++++.|.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 85433211 112222222 233589999999999999999998875
No 226
>PRK09866 hypothetical protein; Provisional
Probab=99.16 E-value=6.8e-10 Score=87.15 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=69.9
Q ss_pred ceeccchhH-----HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHH
Q 032243 2 QWDTAGQER-----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET 76 (144)
Q Consensus 2 i~Dt~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 76 (144)
|.||||... ...++...+.++|+++||+|.+...+..+ ......+.... ...|+++|+||+|+.+...-..+.
T Consensus 234 FVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreeddkE~ 311 (741)
T PRK09866 234 LLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDDADQ 311 (741)
T ss_pred EEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccchHHH
Confidence 689999643 34455567999999999999987433332 12233333322 135999999999985432222334
Q ss_pred HHHHHH----HcCC---cEEEeecCCCCCHHHHHHHHHHH
Q 032243 77 AKAFAD----EIGI---PFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 77 ~~~~~~----~~~~---~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+..+.. ..++ .+|++||+.|.|++++++.|...
T Consensus 312 Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 312 VRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 444432 1122 69999999999999999988763
No 227
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.16 E-value=7.5e-10 Score=76.17 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=63.4
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc---CHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~ 77 (144)
|.||||+.+|.......+..+|++++|+|+..... ......+..+... ..| +++++||+|+...... ..+++
T Consensus 69 ~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i 144 (195)
T cd01884 69 HVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEV 144 (195)
T ss_pred EEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHH
Confidence 78999999988877777889999999999876321 1122333333332 355 7789999998543221 11234
Q ss_pred HHHHHHcC-----CcEEEeecCCCCCH
Q 032243 78 KAFADEIG-----IPFMETSAKDSTNV 99 (144)
Q Consensus 78 ~~~~~~~~-----~~~~~~Sa~~~~~i 99 (144)
..+....+ ++++++||.+|.++
T Consensus 145 ~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 145 RELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHhcccccCCeEEEeeCccccCC
Confidence 44444443 58999999999885
No 228
>PRK00098 GTPase RsgA; Reviewed
Probab=99.16 E-value=1e-10 Score=85.32 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=63.0
Q ss_pred cCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCC
Q 032243 20 RGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 98 (144)
Q Consensus 20 ~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 98 (144)
.++|.+++|+|++++.++.. +..|+..+... ++|+++|+||+|+..... .........+..+++++++||+++.|
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~---~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN---GIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC---CCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 89999999999988754443 46676665432 589999999999853221 12233444556788999999999999
Q ss_pred HHHHHHHHHH
Q 032243 99 VEQAFMAMAA 108 (144)
Q Consensus 99 i~~l~~~i~~ 108 (144)
++++++.+..
T Consensus 155 i~~L~~~l~g 164 (298)
T PRK00098 155 LDELKPLLAG 164 (298)
T ss_pred HHHHHhhccC
Confidence 9999987653
No 229
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.16 E-value=1.5e-10 Score=84.05 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=66.2
Q ss_pred hcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCC
Q 032243 19 YRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST 97 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 97 (144)
+.++|.+++|+|++++. ++..+..|+..+... ++|+++|+||+||.+... ...........+.+++.+||+++.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCCc
Confidence 78999999999999887 778888888776543 489999999999964321 122233344567899999999999
Q ss_pred CHHHHHHHHHH
Q 032243 98 NVEQAFMAMAA 108 (144)
Q Consensus 98 ~i~~l~~~i~~ 108 (144)
|+++++..+..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999987764
No 230
>PRK12736 elongation factor Tu; Reviewed
Probab=99.16 E-value=5.3e-10 Score=84.53 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=67.2
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC---HHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~ 77 (144)
||||||+++|......-+..+|++++|+|+++...-. ....+..+... ..| +++++||+|+.+..... .+++
T Consensus 79 ~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i 154 (394)
T PRK12736 79 HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEV 154 (394)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHH
Confidence 7999999999876666678899999999987632111 12223333322 467 67889999986432221 1234
Q ss_pred HHHHHHcC-----CcEEEeecCCCC--------CHHHHHHHHHHHH
Q 032243 78 KAFADEIG-----IPFMETSAKDST--------NVEQAFMAMAASI 110 (144)
Q Consensus 78 ~~~~~~~~-----~~~~~~Sa~~~~--------~i~~l~~~i~~~~ 110 (144)
..+....+ .+++++||.+|. ++..+++.+...+
T Consensus 155 ~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 155 RELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 44444444 479999999983 4556666555443
No 231
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.15 E-value=1.6e-10 Score=80.37 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=48.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
++|||||+.+|...+..++..+|++++|+|..+..++.. ..++..... ...|+++++||+|+.
T Consensus 74 ~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 74 NIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred EEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 489999999998888899999999999999987654432 333333322 248999999999974
No 232
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.14 E-value=4.6e-10 Score=84.90 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=60.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcccC---HHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVVS---YET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~---~~~ 76 (144)
.||||||+++|.......+..+|++++|+|+++..... ....+..+... .+|.+ +++||+|+.+..... .++
T Consensus 78 ~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~ 153 (394)
T TIGR00485 78 AHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEME 153 (394)
T ss_pred EEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHH
Confidence 38999999999876666677899999999998632111 12222223222 36655 689999986533211 124
Q ss_pred HHHHHHHcC-----CcEEEeecCCCC
Q 032243 77 AKAFADEIG-----IPFMETSAKDST 97 (144)
Q Consensus 77 ~~~~~~~~~-----~~~~~~Sa~~~~ 97 (144)
+..+++..+ ++++++||.++.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 154 VRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHhcCCCccCccEEECcccccc
Confidence 455555554 689999999874
No 233
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.11 E-value=6.6e-10 Score=80.21 Aligned_cols=87 Identities=18% Similarity=0.361 Sum_probs=68.3
Q ss_pred hcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-cEEEee
Q 032243 19 YRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETS 92 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 92 (144)
+++++.++||+|++.+ +.++.++.++.++..+.. ...|.++|+||+|+... ...-+.++.+.+.- .++++|
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvs 348 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVS 348 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEee
Confidence 7899999999999998 888888888888877654 47899999999998421 12223555555544 499999
Q ss_pred cCCCCCHHHHHHHHHH
Q 032243 93 AKDSTNVEQAFMAMAA 108 (144)
Q Consensus 93 a~~~~~i~~l~~~i~~ 108 (144)
|++++|+.++++.|..
T Consensus 349 A~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 349 AKSGEGLEELLNGLRE 364 (366)
T ss_pred eccccchHHHHHHHhh
Confidence 9999999999987754
No 234
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.09 E-value=1.7e-09 Score=81.51 Aligned_cols=102 Identities=20% Similarity=0.134 Sum_probs=69.2
Q ss_pred CceeccchhH-----H----hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQER-----F----RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~~-----~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
++.||||.+. + .......++.||++|||+|...--+-. +..+..+.... ..|+++|+||+|-..
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~--D~~ia~~Lr~~--~kpviLvvNK~D~~~--- 126 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPA--DEEIAKILRRS--KKPVILVVNKIDNLK--- 126 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHH--HHHHHHHHHhc--CCCEEEEEEcccCch---
Confidence 3789999753 2 223455578899999999987622111 12222222222 589999999999642
Q ss_pred cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 72 VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.+........+|+ .++++||..|.|+.++++.+...+.
T Consensus 127 --~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 127 --AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred --hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 2222233345665 8899999999999999999999974
No 235
>PRK12288 GTPase RsgA; Reviewed
Probab=99.09 E-value=1e-09 Score=81.54 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=66.8
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCcEEEeecCCCC
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPFMETSAKDST 97 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 97 (144)
..|+|.+++|++.+...++..+..|+..... ..+|+++|+||+|+.+.... ............+++++.+||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 3579999999999888889999999875543 24899999999999643211 1122233445677899999999999
Q ss_pred CHHHHHHHHHHH
Q 032243 98 NVEQAFMAMAAS 109 (144)
Q Consensus 98 ~i~~l~~~i~~~ 109 (144)
|++++++.+...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999988653
No 236
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.08 E-value=5.9e-10 Score=85.45 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=66.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHH-------HHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCcc-
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN-------NVKQWLNEIDRYASDNV-NKLLVGNKCDLTANKV- 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~~~- 71 (144)
.|.||||+++|...+...+..+|++|+|+|+++ ..|+ ...+.+...... .+ ++++++||+|+.+...
T Consensus 88 ~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 88 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred EEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCchhhh
Confidence 378999999999999999999999999999986 2232 222322222222 35 5688899999752110
Q ss_pred -----cCHHHHHHHHHHcC-----CcEEEeecCCCCCHHH
Q 032243 72 -----VSYETAKAFADEIG-----IPFMETSAKDSTNVEQ 101 (144)
Q Consensus 72 -----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 101 (144)
...+++..+++..+ ++++++||.+|.|+.+
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 01334555566555 5799999999999854
No 237
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.07 E-value=8.7e-10 Score=85.11 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=62.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH----H
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE----T 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~----~ 76 (144)
.||||||+++|...+..-+..+|++++|+|++....-.. ...+....... ..++++++||+|+.+....... +
T Consensus 110 ~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~~i~~~ 186 (474)
T PRK05124 110 IIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG--IKHLVVAVNKMDLVDYSEEVFERIRED 186 (474)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC--CCceEEEEEeeccccchhHHHHHHHHH
Confidence 379999999997766666799999999999875321111 11111111111 2478999999998632211111 2
Q ss_pred HHHHHHHcC----CcEEEeecCCCCCHHHHH
Q 032243 77 AKAFADEIG----IPFMETSAKDSTNVEQAF 103 (144)
Q Consensus 77 ~~~~~~~~~----~~~~~~Sa~~~~~i~~l~ 103 (144)
...+....+ .+++++||++|.|+.++-
T Consensus 187 l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 187 YLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 222233333 579999999999998653
No 238
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.06 E-value=1.6e-09 Score=80.97 Aligned_cols=95 Identities=26% Similarity=0.379 Sum_probs=68.7
Q ss_pred hhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHH
Q 032243 8 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK----AFADE 83 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~~ 83 (144)
.++|..+...++++++++++|+|+.+.. ..|...+..... ..|+++|+||+|+.+. ........ ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4678888999999999999999997653 123333333322 4799999999999653 22233333 33555
Q ss_pred cCC---cEEEeecCCCCCHHHHHHHHHHH
Q 032243 84 IGI---PFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 84 ~~~---~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.++ .++.+||++|.|++++++.|...
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 666 48999999999999999998764
No 239
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=3.9e-09 Score=81.10 Aligned_cols=103 Identities=20% Similarity=0.142 Sum_probs=75.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
|.||||+.-|..|+..=..-+|.+++|+..+|--.-. -...+.+....++|+++.+||+|.+.. +.+...+..
T Consensus 205 FLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQ----T~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL 277 (683)
T KOG1145|consen 205 FLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQ----TLEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKREL 277 (683)
T ss_pred EecCCcHHHHHHHHhccCccccEEEEEEEccCCccHh----HHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHH
Confidence 6899999999999999888899999999988732111 222344444447999999999997432 233332232
Q ss_pred HHcC---------CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 82 DEIG---------IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 82 ~~~~---------~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
...| .+++++||++|.|++.|.+.+.....
T Consensus 278 ~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 278 LSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence 2332 47999999999999999998776653
No 240
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.04 E-value=1.3e-09 Score=82.45 Aligned_cols=105 Identities=24% Similarity=0.280 Sum_probs=75.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+++||||+-.|.--....+.-|-++++|+|++.----..+.+.+..+. .+.-++-|+||+||+.... .....+.
T Consensus 79 nlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eI 152 (603)
T COG0481 79 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEI 152 (603)
T ss_pred EEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHH
Confidence 478999999887766666788999999999975322233334333332 2467888999999964332 3333444
Q ss_pred HHHcCC---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
..-.|+ ..+.+||++|.|++++++.|+..+.
T Consensus 153 e~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 153 EDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred HHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 445565 5799999999999999999998874
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.02 E-value=2e-09 Score=81.70 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=63.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH----HH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY----ET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~ 76 (144)
.||||||+++|...+...+..+|++++|+|+.....-. ....+..+.... ..++++++||+|+.+...... ++
T Consensus 83 ~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~~~ 159 (406)
T TIGR02034 83 IVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIKKD 159 (406)
T ss_pred EEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHHHH
Confidence 37999999999877667788999999999987532111 111111122211 246889999999864221101 12
Q ss_pred HHHHHHHcC---CcEEEeecCCCCCHHHH
Q 032243 77 AKAFADEIG---IPFMETSAKDSTNVEQA 102 (144)
Q Consensus 77 ~~~~~~~~~---~~~~~~Sa~~~~~i~~l 102 (144)
...+.+..+ .+++++||.+|.|+.+.
T Consensus 160 ~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 160 YLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 222334444 47999999999999863
No 242
>COG2262 HflX GTPases [General function prediction only]
Probab=99.02 E-value=9.3e-09 Score=76.60 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=69.7
Q ss_pred HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243 10 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM 89 (144)
Q Consensus 10 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (144)
-|.+..+. ...+|++++|+|++++.....+......+....-...|+++|.||+|+..... ....+....-..+
T Consensus 261 AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v 334 (411)
T COG2262 261 AFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPV 334 (411)
T ss_pred HHHHHHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeE
Confidence 35555555 56899999999999997666655555555554434689999999999754322 1112211111589
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHh
Q 032243 90 ETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 90 ~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.+||++|.|++.+++.|...+...
T Consensus 335 ~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 335 FISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred EEEeccCcCHHHHHHHHHHHhhhc
Confidence 999999999999999999988754
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.02 E-value=4.8e-09 Score=81.90 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=47.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
++|||||+.+|......++..+|++|+|+|+++... .....++..... .++|+++++||+|+.
T Consensus 82 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 82 NLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred EEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 489999999999888888999999999999876421 122333333322 258999999999974
No 244
>PRK12735 elongation factor Tu; Reviewed
Probab=99.02 E-value=3e-09 Score=80.50 Aligned_cols=104 Identities=14% Similarity=0.208 Sum_probs=67.5
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCccc---CHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVV---SYETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~---~~~~~ 77 (144)
|+||||+++|.......+..+|++++|+|+.+... ......+..+... .+|.+ +++||+|+.+.... ...++
T Consensus 79 ~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei 154 (396)
T PRK12735 79 HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEV 154 (396)
T ss_pred EEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHH
Confidence 79999999998777777889999999999876321 1122333333222 46755 57999998642221 11234
Q ss_pred HHHHHHcC-----CcEEEeecCCCC----------CHHHHHHHHHHH
Q 032243 78 KAFADEIG-----IPFMETSAKDST----------NVEQAFMAMAAS 109 (144)
Q Consensus 78 ~~~~~~~~-----~~~~~~Sa~~~~----------~i~~l~~~i~~~ 109 (144)
..+.+..+ ++++++||.+|. ++..+++.|...
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 44454443 578999999984 556666665554
No 245
>PRK13351 elongation factor G; Reviewed
Probab=99.01 E-value=4.7e-09 Score=84.52 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=50.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+|...+..++..+|++++|+|.++......... +..+... .+|+++++||+|+..
T Consensus 76 ~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~~~~~~---~~p~iiviNK~D~~~ 139 (687)
T PRK13351 76 NLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WRQADRY---GIPRLIFINKMDRVG 139 (687)
T ss_pred EEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHhc---CCCEEEEEECCCCCC
Confidence 489999999999999999999999999999987655544333 3333322 589999999999853
No 246
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.01 E-value=4.6e-09 Score=75.57 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=47.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
++|||||+.+|......++..+|++++|+|+++... .....++..... .++|+++++||+|+..
T Consensus 74 ~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 74 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 489999999998877888999999999999976422 122233333322 2589999999999854
No 247
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.96 E-value=7e-09 Score=75.67 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=70.9
Q ss_pred hcCCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEE-ee
Q 032243 19 YRGAHGIIIVYDVTDQE---SFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME-TS 92 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~S 92 (144)
++++.++++|+|++..+ ..+++..+...+..+.+ ...|.+||+||+|+....+........+.+..++..+. +|
T Consensus 235 IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~IS 314 (369)
T COG0536 235 IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLIS 314 (369)
T ss_pred HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeee
Confidence 78899999999988544 57777777788877754 37899999999996443332222333444455554333 99
Q ss_pred cCCCCCHHHHHHHHHHHHHHhh
Q 032243 93 AKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 93 a~~~~~i~~l~~~i~~~~~~~~ 114 (144)
|.++.|++++...+...+....
T Consensus 315 a~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 315 ALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hhcccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999987765
No 248
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.96 E-value=5.3e-09 Score=78.83 Aligned_cols=113 Identities=22% Similarity=0.191 Sum_probs=74.5
Q ss_pred ceeccchhHHhhh-----------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 032243 2 QWDTAGQERFRTI-----------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 70 (144)
Q Consensus 2 i~Dt~G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 70 (144)
+.||+|..+-... .-..++.+|.+++|+|.+..-+-.+ ......+... ..++++++||.|+..+.
T Consensus 230 liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~~---g~~~vIvvNKWDl~~~~ 305 (444)
T COG1160 230 LIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-LRIAGLIEEA---GRGIVIVVNKWDLVEED 305 (444)
T ss_pred EEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHHc---CCCeEEEEEccccCCch
Confidence 6899997542211 1233678999999999998755443 2333333332 57999999999987653
Q ss_pred ccCHHHHHHHHHH----cC-CcEEEeecCCCCCHHHHHHHHHHHHHHhhccCC
Q 032243 71 VVSYETAKAFADE----IG-IPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118 (144)
Q Consensus 71 ~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~ 118 (144)
....++....... .+ .+++.+||++|.++..+|+.+...........+
T Consensus 306 ~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~ 358 (444)
T COG1160 306 EATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRIS 358 (444)
T ss_pred hhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccC
Confidence 3333333222222 22 489999999999999999988887665444333
No 249
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.95 E-value=5.1e-09 Score=69.52 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=57.1
Q ss_pred hhcCCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCC
Q 032243 18 YYRGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD 95 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 95 (144)
.++++|++++|+|+.++.. ...+..++. . .....|+++|+||+|+.++... ......+.+......+++||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---h-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4789999999999988632 222333222 2 2224799999999999643221 1112222222222357899999
Q ss_pred CCCHHHHHHHHHHHHH
Q 032243 96 STNVEQAFMAMAASIK 111 (144)
Q Consensus 96 ~~~i~~l~~~i~~~~~ 111 (144)
+.|++++++.+...+.
T Consensus 80 ~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 80 PFGKGSLIQLLRQFSK 95 (157)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999987654
No 250
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.94 E-value=2.3e-09 Score=82.60 Aligned_cols=120 Identities=24% Similarity=0.268 Sum_probs=87.3
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHH-H
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYET-A 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~-~ 77 (144)
|.||+....-+...+.-++++|++.++|+.+++.+++.+.. |+-.+++... ..+|+|+||||.|.......+.+. .
T Consensus 60 ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~ 139 (625)
T KOG1707|consen 60 IVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNT 139 (625)
T ss_pred EEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHH
Confidence 46776554444445667899999999999999999999964 8888877663 479999999999986544332222 3
Q ss_pred HHHHHHcC-C-cEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCC
Q 032243 78 KAFADEIG-I-PFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121 (144)
Q Consensus 78 ~~~~~~~~-~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 121 (144)
..+...+. + ..++|||++..++.++|....+++.+.-.+...++
T Consensus 140 ~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~ 185 (625)
T KOG1707|consen 140 LPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAE 185 (625)
T ss_pred HHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccccc
Confidence 33333332 2 67999999999999999998888876555444433
No 251
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.93 E-value=6.5e-09 Score=78.59 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=70.3
Q ss_pred CceeccchhHHhh--------hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRT--------ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
.+.||+|.++-.. -....++.+|.+++|+|.+.+.+-.+... +. ....+.|+++|.||.|+......
T Consensus 268 ~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~ 342 (454)
T COG0486 268 RLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIEL 342 (454)
T ss_pred EEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhccccccc
Confidence 3789999754222 13455789999999999998522222111 11 22336899999999999654332
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
. ......+.+++.+|+++|.|++.+.+.|...+...
T Consensus 343 ~-----~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 343 E-----SEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred c-----hhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 1 11112345799999999999999999999988754
No 252
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.93 E-value=1.5e-08 Score=74.79 Aligned_cols=114 Identities=23% Similarity=0.290 Sum_probs=81.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHH-------HHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES-------FNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~ 69 (144)
.++|+|||...++-|.+++++++++|||+++++-+. -+.+.+.+..+..... .+.+++|++||.||..+
T Consensus 198 ~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 198 RMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEE 277 (354)
T ss_pred EEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHH
Confidence 378999999999999999999999999999886442 2344444444444332 36899999999999532
Q ss_pred cc---------------cCHHHHHHHHHHc----------CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 70 KV---------------VSYETAKAFADEI----------GIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 70 ~~---------------~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+. -..+++..+.... .+.+..++|.+-.++..+|..+.+.+....
T Consensus 278 Ki~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 278 KIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 11 1223333332211 235667899999999999999999987654
No 253
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.91 E-value=5.2e-09 Score=73.64 Aligned_cols=109 Identities=18% Similarity=0.364 Sum_probs=69.0
Q ss_pred CceeccchhHHhh-----hhhhhhcCCCEEEEEEeCCCHHH---HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRT-----ITSSYYRGAHGIIIVYDVTDQES---FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++||+|||..+.. .....++++.++|||+|+.+.+- +..+...+..+..+++ +..+.+++.|+|+..+..-
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r 129 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDER 129 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHH
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHH
Confidence 5899999975433 35777899999999999984443 3334445555566664 6889999999998643211
Q ss_pred --C----HHHHHHHHHHcC---CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 73 --S----YETAKAFADEIG---IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 73 --~----~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
. .+.+...+...+ +.++.||.-+ +.+.+.|..|+..+.
T Consensus 130 ~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 130 EEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 0 112233334445 6788999887 677777777776654
No 254
>PRK12740 elongation factor G; Reviewed
Probab=98.90 E-value=1.8e-08 Score=81.02 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=48.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+||||||+.+|...+..++..+|++++|+|.+........ ..+..+.. .+.|+++++||+|+.
T Consensus 63 ~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 63 NLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred EEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence 4899999999988888899999999999999876544432 22333322 258999999999985
No 255
>PRK00049 elongation factor Tu; Reviewed
Probab=98.89 E-value=2.4e-08 Score=75.64 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=60.3
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcccC---HHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVVS---YETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~---~~~~ 77 (144)
|.||||+.+|.......+..+|++++|+|+.+... ......+..+... ..|.+ +++||+|+.+..... ..++
T Consensus 79 ~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i 154 (396)
T PRK00049 79 HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEV 154 (396)
T ss_pred EEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHH
Confidence 78999999988877777899999999999876422 2222333333322 47875 589999986422210 1233
Q ss_pred HHHHHHcC-----CcEEEeecCCCC
Q 032243 78 KAFADEIG-----IPFMETSAKDST 97 (144)
Q Consensus 78 ~~~~~~~~-----~~~~~~Sa~~~~ 97 (144)
..+....+ ++++++||.++.
T Consensus 155 ~~~l~~~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 155 RELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred HHHHHhcCCCccCCcEEEeeccccc
Confidence 33444332 589999999875
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.88 E-value=1.3e-08 Score=81.31 Aligned_cols=98 Identities=22% Similarity=0.222 Sum_probs=62.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH----HH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY----ET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~ 76 (144)
.|+||||+++|.......+..+|++++|+|++....-. ....+..+.... ..++++++||+|+.+...... .+
T Consensus 107 ~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~~i~~~ 183 (632)
T PRK05506 107 IVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFDEIVAD 183 (632)
T ss_pred EEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHhC--CCeEEEEEEecccccchhHHHHHHHHH
Confidence 37999999998876666788999999999986532111 111111122221 257889999999864211101 12
Q ss_pred HHHHHHHcCC---cEEEeecCCCCCHHH
Q 032243 77 AKAFADEIGI---PFMETSAKDSTNVEQ 101 (144)
Q Consensus 77 ~~~~~~~~~~---~~~~~Sa~~~~~i~~ 101 (144)
...+.+..++ +++++||++|.|+.+
T Consensus 184 i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 184 YRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHcCCCCccEEEEecccCCCccc
Confidence 2233344453 699999999999984
No 257
>CHL00071 tufA elongation factor Tu
Probab=98.88 E-value=2.2e-08 Score=76.21 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=62.5
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC---HHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~ 77 (144)
|.||||+.+|.......+..+|++++|+|+..... ......+..+... .+| +++++||+|+.+..... .+++
T Consensus 79 ~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l 154 (409)
T CHL00071 79 HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEV 154 (409)
T ss_pred EEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHH
Confidence 78999999988877777889999999999875321 1222333333222 467 67889999986432211 1234
Q ss_pred HHHHHHcC-----CcEEEeecCCCCCH
Q 032243 78 KAFADEIG-----IPFMETSAKDSTNV 99 (144)
Q Consensus 78 ~~~~~~~~-----~~~~~~Sa~~~~~i 99 (144)
..+.+..+ ++++++||.+|.++
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 155 RELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHhCCCCCcceEEEcchhhcccc
Confidence 44444443 58999999998743
No 258
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.87 E-value=1.7e-08 Score=77.54 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=62.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC--C--
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVN-KLLVGNKCDLTA--N-- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~--~-- 69 (144)
.|+||||+.+|...+...+..+|++++|+|++.-. .| ....+.+...... .+| +++++||+|... -
T Consensus 88 ~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 88 TIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred EEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccchhhH
Confidence 37999999999888888889999999999987531 01 1122222222222 355 678999999531 1
Q ss_pred ccc--CHHHHHHHHHHcC-----CcEEEeecCCCCCHHH
Q 032243 70 KVV--SYETAKAFADEIG-----IPFMETSAKDSTNVEQ 101 (144)
Q Consensus 70 ~~~--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 101 (144)
... ..+++..+....+ ++++++|+.+|.|+.+
T Consensus 165 ~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 110 1223333333333 5799999999999864
No 259
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.85 E-value=2.4e-08 Score=72.04 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=67.7
Q ss_pred ceeccch------hH------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 2 QWDTAGQ------ER------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 2 i~Dt~G~------~~------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
|+||||. .+ +....+..+.++|.+++|+|+++....-. ...+..+..+. .+|-++|.||.|....
T Consensus 124 f~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 124 FYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQ 200 (379)
T ss_pred EecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchh
Confidence 7999994 11 12233556789999999999986322211 22344455555 5899999999998643
Q ss_pred cc-------------cCHHHHHHHHHHc-------------CC----cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 70 KV-------------VSYETAKAFADEI-------------GI----PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 70 ~~-------------~~~~~~~~~~~~~-------------~~----~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+. ++.. ...+.++. || .+|.+||++|.|++++-++|...+.
T Consensus 201 k~~Ll~l~~~Lt~g~l~~~-kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 201 KRLLLNLKDLLTNGELAKL-KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hhHHhhhHHhccccccchh-hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 22 1110 11122211 12 4899999999999999998887654
No 260
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.84 E-value=2.6e-08 Score=66.04 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=54.1
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHH
Q 032243 23 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA 102 (144)
Q Consensus 23 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 102 (144)
|++++|+|+.++.+... .++.. ......+.|+++|+||+|+.+...+ ..-...+.+..+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988654432 22221 1111235899999999998543211 11111232233457899999999999999
Q ss_pred HHHHHHHH
Q 032243 103 FMAMAASI 110 (144)
Q Consensus 103 ~~~i~~~~ 110 (144)
++.+...+
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99887654
No 261
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.83 E-value=2.2e-08 Score=73.70 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCcEEEeecCCCCCHHHHHH-HHHHHHH
Q 032243 54 NVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFM-AMAASIK 111 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~-~i~~~~~ 111 (144)
..|+++++||.|+..... ....+.... ...++++||+.+.++.++.+ .+...+.
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 479999999999743222 111222233 45799999999999999998 5888774
No 262
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.6e-08 Score=66.77 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=79.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
-+|.+|+..-+..|+.|+..+|++++++|+.|...|.+.+.-+..+.... ....|+++.+||+|.... .++++....
T Consensus 68 t~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~ 145 (193)
T KOG0077|consen 68 TFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFH 145 (193)
T ss_pred EEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHH
Confidence 47999999999999999999999999999999999888776666554432 247999999999998543 234443222
Q ss_pred HH---Hc-----------C---CcEEEeecCCCCCHHHHHHHHHHH
Q 032243 81 AD---EI-----------G---IPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 81 ~~---~~-----------~---~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.- .. + +.++.+|...+.|..+.|.|+...
T Consensus 146 l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 146 LGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred HHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 11 11 1 247888999999988888877654
No 263
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.83 E-value=3.5e-08 Score=71.16 Aligned_cols=64 Identities=27% Similarity=0.314 Sum_probs=47.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+|...+..+++.+|++++|+|..+...-. ....+..+... +.|+++++||+|+.+
T Consensus 67 ~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~---~~p~ivviNK~D~~~ 130 (270)
T cd01886 67 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY---NVPRIAFVNKMDRTG 130 (270)
T ss_pred EEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc---CCCEEEEEECCCCCC
Confidence 37999999999988999999999999999987632111 12333333322 489999999999854
No 264
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=2.4e-08 Score=65.16 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=51.1
Q ss_pred hhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecC
Q 032243 17 SYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK 94 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 94 (144)
..++++|++++|+|+.++.+.. .+..++... . .+.|+++++||+|+.++.. ........+..+..++++||.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 4488999999999998865433 333333322 1 3579999999999854322 223344455566789999999
Q ss_pred CCCC
Q 032243 95 DSTN 98 (144)
Q Consensus 95 ~~~~ 98 (144)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8753
No 265
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.82 E-value=1.8e-08 Score=68.24 Aligned_cols=70 Identities=30% Similarity=0.410 Sum_probs=47.8
Q ss_pred CceeccchhHHhhhhhh---hhcCCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCc
Q 032243 1 MQWDTAGQERFRTITSS---YYRGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANK 70 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~---~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~ 70 (144)
+++|+||+.+.+..... +..++.++|||+|++. ...+.++.+++..+.... ...+|++|+.||.|+....
T Consensus 52 ~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 52 RLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp CEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 47999999987764333 4788999999999974 456667766666664332 2479999999999997543
No 266
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.81 E-value=3.6e-08 Score=66.39 Aligned_cols=95 Identities=19% Similarity=0.120 Sum_probs=63.7
Q ss_pred hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcE
Q 032243 9 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPF 88 (144)
Q Consensus 9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (144)
.+........++++|.+++|+|++++....+ ..+...+ ...|+++|+||+|+.+... .....++.+..+..+
T Consensus 7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~v 78 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKV 78 (171)
T ss_pred HHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeE
Confidence 4556666777999999999999976532211 1112211 1368999999999853321 111212333334578
Q ss_pred EEeecCCCCCHHHHHHHHHHHHH
Q 032243 89 METSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 89 ~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.+||+++.|++++.+.+...+.
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 99999999999999999988763
No 267
>PLN03126 Elongation factor Tu; Provisional
Probab=98.80 E-value=8.1e-08 Score=74.29 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=62.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC---HHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~ 77 (144)
||||||+++|.......+..+|++++|+|+.+-.. ....+++..+... .+| +++++||+|+.+..... .+++
T Consensus 148 liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i 223 (478)
T PLN03126 148 HVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEV 223 (478)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHH
Confidence 79999999998877777889999999999875322 1223333333322 467 67899999986532210 1234
Q ss_pred HHHHHHc-----CCcEEEeecCCCCC
Q 032243 78 KAFADEI-----GIPFMETSAKDSTN 98 (144)
Q Consensus 78 ~~~~~~~-----~~~~~~~Sa~~~~~ 98 (144)
..+.+.. .++++++|+.++.+
T Consensus 224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 224 RELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHhcCCCcCcceEEEEEcccccc
Confidence 4444443 35799999998753
No 268
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.80 E-value=6e-08 Score=70.16 Aligned_cols=100 Identities=23% Similarity=0.203 Sum_probs=65.7
Q ss_pred cchh-HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 032243 6 AGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84 (144)
Q Consensus 6 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 84 (144)
||+. +..+.....++.+|++++|+|+.++.+... ..+...+ ...|+++|+||+|+.+... ........+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence 4553 344455667899999999999976543221 1111111 1479999999999854221 11112223334
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 85 GIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 85 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+.+++.+||+++.|++++++.+...+...
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 56789999999999999999998887543
No 269
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.79 E-value=9.2e-08 Score=68.84 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=59.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||||..+|...+..++..+|++++|+|.++...... ...+..+.. ...|.++++||+|+.... . ......+
T Consensus 67 ~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~---~~~p~iivvNK~D~~~~~-~-~~~~~~l 140 (268)
T cd04170 67 NLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE---AGIPRIIFINKMDRERAD-F-DKTLAAL 140 (268)
T ss_pred EEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCccCCCC-H-HHHHHHH
Confidence 489999999998888899999999999999987543332 222222322 258999999999985431 1 2233334
Q ss_pred HHHcCCcEEEee--cCCCCCH
Q 032243 81 ADEIGIPFMETS--AKDSTNV 99 (144)
Q Consensus 81 ~~~~~~~~~~~S--a~~~~~i 99 (144)
....+.++++++ ..++.++
T Consensus 141 ~~~~~~~~~~~~ip~~~~~~~ 161 (268)
T cd04170 141 QEAFGRPVVPLQLPIGEGDDF 161 (268)
T ss_pred HHHhCCCeEEEEecccCCCce
Confidence 444555444443 3444443
No 270
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.78 E-value=1.2e-07 Score=65.35 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=63.9
Q ss_pred CceeccchhHHhhhhhh-----hhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--
Q 032243 1 MQWDTAGQERFRTITSS-----YYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVV-- 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-- 72 (144)
.+|||+|........+. .+.++|+++++.+. . |...+ .++..+... ..|+++|+||+|+..+...
T Consensus 55 ~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~ 127 (197)
T cd04104 55 TLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRS 127 (197)
T ss_pred eEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhcc
Confidence 37999997533222222 25678999888542 2 33332 344444443 4789999999998432110
Q ss_pred -----CHH----HHHHHHH----HcC---CcEEEeecC--CCCCHHHHHHHHHHHHHHh
Q 032243 73 -----SYE----TAKAFAD----EIG---IPFMETSAK--DSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 73 -----~~~----~~~~~~~----~~~---~~~~~~Sa~--~~~~i~~l~~~i~~~~~~~ 113 (144)
..+ +..+.+. ..+ -++|.+|+. .+.|+..+.+.|...+..+
T Consensus 128 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 128 KPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 011 1111111 212 278999998 5799999999999988753
No 271
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.77 E-value=1.4e-07 Score=64.40 Aligned_cols=105 Identities=12% Similarity=0.190 Sum_probs=72.6
Q ss_pred ceeccc----------hhHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 2 QWDTAG----------QERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 2 i~Dt~G----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
|.|.|| ++.+..+...|++. ..++++++|+.....-.+. +++..+... .+|+++++||+|..+
T Consensus 74 lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~ 149 (200)
T COG0218 74 LVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLK 149 (200)
T ss_pred EEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCC
Confidence 688998 57788888888853 6889999999876433332 223333322 599999999999876
Q ss_pred CcccCHHHHHHHHHHcC----Cc--EEEeecCCCCCHHHHHHHHHHHHH
Q 032243 69 NKVVSYETAKAFADEIG----IP--FMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 69 ~~~~~~~~~~~~~~~~~----~~--~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
..+. ........+.+. +. ++.+|+.++.|++++.+.|...+.
T Consensus 150 ~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 150 KSER-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred hhHH-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 4332 222233333332 23 788999999999999999988775
No 272
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.76 E-value=6.3e-08 Score=68.59 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=55.9
Q ss_pred ceeccchhHHhhhhhhhh--------cCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 032243 2 QWDTAGQERFRTITSSYY--------RGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 70 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 70 (144)
|+|||||.++-..|...- ...-++++++|... +..|-. .++..+........|.+.|+||+|+....
T Consensus 95 l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~ 172 (238)
T PF03029_consen 95 LFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLLSKY 172 (238)
T ss_dssp EEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS-HH
T ss_pred EEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcccch
Confidence 689999988766554443 45678999999753 333432 22222221111258999999999996521
Q ss_pred c------------cC-------HHHHHHHHHH---cC-C-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243 71 V------------VS-------YETAKAFADE---IG-I-PFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 71 ~------------~~-------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
. .. ..-...+++. .+ . .++++|+.++.|+.+++..+-+++
T Consensus 173 ~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 173 LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 0 00 0000111221 12 2 799999999999999999887765
No 273
>PLN03127 Elongation factor Tu; Provisional
Probab=98.76 E-value=7.5e-08 Score=73.96 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=63.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccCH---HHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVSY---ETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~ 77 (144)
|.||||+.+|......-+..+|++++|+|.++... ......+..+... .+| +++++||+|+.+...... .+.
T Consensus 128 ~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i 203 (447)
T PLN03127 128 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMEL 203 (447)
T ss_pred EEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHH
Confidence 78999999887766666778999999999875321 1122223333222 478 478899999864322111 122
Q ss_pred HHHHHHc-----CCcEEEeecC---CCCC-------HHHHHHHHHHHH
Q 032243 78 KAFADEI-----GIPFMETSAK---DSTN-------VEQAFMAMAASI 110 (144)
Q Consensus 78 ~~~~~~~-----~~~~~~~Sa~---~~~~-------i~~l~~~i~~~~ 110 (144)
..+.... .++++++||. ++.| +..+++.+...+
T Consensus 204 ~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 204 RELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2333322 2578888876 4444 556666555543
No 274
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=2.4e-07 Score=63.68 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=73.2
Q ss_pred ceeccchhHHhhhhhhhhc---CCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCcccC-
Q 032243 2 QWDTAGQERFRTITSSYYR---GAHGIIIVYDVTD-QESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANKVVS- 73 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~---~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~- 73 (144)
++|.||+.|.+.-...++. ++-+++||+|+.. .....++.+++..+.... ...+|+++.-||+|+...+...
T Consensus 86 LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~ 165 (238)
T KOG0090|consen 86 LVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEK 165 (238)
T ss_pred EEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHH
Confidence 6899999999888777776 7999999999764 344566666666664443 3578999999999996543211
Q ss_pred -----HHHHHHHHH--------------------------------HcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 74 -----YETAKAFAD--------------------------------EIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 74 -----~~~~~~~~~--------------------------------~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+.++..+.+ ...+.+.+.|++++ +++++.+||.++
T Consensus 166 Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 166 IRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 011110000 01124778888887 899999998765
No 275
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.70 E-value=1.5e-07 Score=68.42 Aligned_cols=100 Identities=24% Similarity=0.272 Sum_probs=65.4
Q ss_pred cchh-HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 032243 6 AGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84 (144)
Q Consensus 6 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 84 (144)
||+. +-.......++.+|++++|+|+.++.+... .++..... ..|+++|+||+|+.+... ......+.+..
T Consensus 8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~ 79 (287)
T PRK09563 8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEEQ 79 (287)
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHHc
Confidence 4553 333445666889999999999977543221 11111211 479999999999853211 11222223344
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 85 GIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 85 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+.+++.+||+++.|++++++.+...+...
T Consensus 80 ~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 80 GIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 56789999999999999999998887643
No 276
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.70 E-value=2.1e-07 Score=67.73 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=71.9
Q ss_pred Cceeccchh-----HHhhh---hhhhh-cCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQE-----RFRTI---TSSYY-RGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~-----~~~~~---~~~~~-~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
|++||||.- +.+.. .-..+ +=.++++|+||.+... +.+.-..++..+.... ..|+++|+||+|+.+.
T Consensus 218 QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 218 QVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADE 295 (346)
T ss_pred EEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccch
Confidence 789999962 12211 11222 2378999999998765 4444445666776665 3799999999998644
Q ss_pred cccCHHHHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 70 KVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
... +++...... .+...+.+++..+.+++.+.+.+.....+
T Consensus 296 e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 296 EKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred hHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhc
Confidence 333 233223333 34468899999999999998888877544
No 277
>PRK12739 elongation factor G; Reviewed
Probab=98.69 E-value=2.6e-07 Score=74.63 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=47.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
.||||||+.+|...+...+..+|++++|+|..+.....+ ...+..+... ..|+++++||+|+..
T Consensus 76 ~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~~---~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 76 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADKY---GVPRIVFVNKMDRIG 139 (691)
T ss_pred EEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHHc---CCCEEEEEECCCCCC
Confidence 379999999998888888999999999999876432222 2333333322 479999999999863
No 278
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.69 E-value=1e-07 Score=76.86 Aligned_cols=90 Identities=20% Similarity=0.260 Sum_probs=59.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+.+|...+..++..+|+++||+|..+.....+ ..++..+... ..|+++++||+|+.... . ......+
T Consensus 78 ~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~ivviNK~D~~~~~-~-~~~~~~i 151 (689)
T TIGR00484 78 NIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANRY---EVPRIAFVNKMDKTGAN-F-LRVVNQI 151 (689)
T ss_pred EEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCCEEEEEECCCCCCCC-H-HHHHHHH
Confidence 489999999988888899999999999999987543332 2333333322 48999999999986432 1 2223334
Q ss_pred HHHcCC----cEEEeecCCC
Q 032243 81 ADEIGI----PFMETSAKDS 96 (144)
Q Consensus 81 ~~~~~~----~~~~~Sa~~~ 96 (144)
...++. ..+++|+..+
T Consensus 152 ~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 152 KQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHhCCCceeEEeccccCCC
Confidence 344442 2456666554
No 279
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.68 E-value=9.1e-08 Score=75.36 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=74.3
Q ss_pred CceeccchhH------Hhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQER------FRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~------~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++.|+||--. -....+.|+ ++.|+++-|+|+++-+. -+....+..+-+.|+++++|+.|...++.+
T Consensus 53 ~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeR------nLyltlQLlE~g~p~ilaLNm~D~A~~~Gi 126 (653)
T COG0370 53 EIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLER------NLYLTLQLLELGIPMILALNMIDEAKKRGI 126 (653)
T ss_pred EEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHH------HHHHHHHHHHcCCCeEEEeccHhhHHhcCC
Confidence 3789998522 223345665 35799999999987321 111111222225899999999998655554
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.-+..++.+.+|+|++++||++|.|++++.+.+.+....
T Consensus 127 -~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 127 -RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred -cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccc
Confidence 445667888999999999999999999999998876543
No 280
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.67 E-value=1.2e-07 Score=74.15 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=47.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+|......++..+|++|+|+|+++.. ......++..... ...|+++++||+|+..
T Consensus 83 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 83 NLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 48999999999887777899999999999987631 1122333333322 2589999999999853
No 281
>PRK01889 GTPase RsgA; Reviewed
Probab=98.65 E-value=1.8e-07 Score=70.01 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=58.9
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCcEEEeecCCCC
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDST 97 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 97 (144)
..|+|.+++|++++.+-....++.++...... +++.++|+||+||.+.. ......+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 47899999999997544445566666666554 46779999999996431 111222222 346799999999999
Q ss_pred CHHHHHHHHH
Q 032243 98 NVEQAFMAMA 107 (144)
Q Consensus 98 ~i~~l~~~i~ 107 (144)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999988774
No 282
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.65 E-value=1.8e-07 Score=59.20 Aligned_cols=99 Identities=27% Similarity=0.250 Sum_probs=68.0
Q ss_pred ceeccch----hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 2 QWDTAGQ----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 2 i~Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
.+||||- .++.+..-....++|++++|...+++.+.-. ..+.... ..|+|-+++|.||..... ....
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLaed~d--I~~~ 111 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAEDAD--ISLV 111 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----ccccccc--ccceEEEEecccccchHh--HHHH
Confidence 4689985 3343334444678999999999988743211 1111222 467999999999964333 3344
Q ss_pred HHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243 78 KAFADEIGI-PFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 78 ~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.++..+.|. ++|.+|+.++.|++++++.+...
T Consensus 112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 112 KRWLREAGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence 556666665 89999999999999999987654
No 283
>PRK13796 GTPase YqeH; Provisional
Probab=98.64 E-value=4.7e-07 Score=67.97 Aligned_cols=94 Identities=24% Similarity=0.385 Sum_probs=61.1
Q ss_pred hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHHc
Q 032243 9 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK----AFADEI 84 (144)
Q Consensus 9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~~~ 84 (144)
+.|.......-...+.+++|+|+.+.. ..|...+..... +.|+++|+||+|+.+. ....+... .+++..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 345555555433344999999987743 123333333222 4789999999999653 22233332 334455
Q ss_pred CC---cEEEeecCCCCCHHHHHHHHHHH
Q 032243 85 GI---PFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 85 ~~---~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 68999999999999999998664
No 284
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.3e-07 Score=73.80 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=73.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------ccc
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN------KVV 72 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~ 72 (144)
++||||++.|..++......||.+|+|+|+.. +.+.+. ++.++.. +.|+||.+||+|-+-+ ..+
T Consensus 544 vIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~r---ktpFivALNKiDRLYgwk~~p~~~i 616 (1064)
T KOG1144|consen 544 VIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRMR---KTPFIVALNKIDRLYGWKSCPNAPI 616 (1064)
T ss_pred EecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHH----HHHHHhc---CCCeEEeehhhhhhcccccCCCchH
Confidence 58999999999999999999999999999865 333333 3334443 5899999999996411 110
Q ss_pred CH------------------HHHHHHHHH-c-----------C--CcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 73 SY------------------ETAKAFADE-I-----------G--IPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 73 ~~------------------~~~~~~~~~-~-----------~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
-. ..+.+|++. + + +.++++||.+|+||-+|+-+|+....-..
T Consensus 617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 00 001112111 0 1 24789999999999999999988775443
No 285
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.62 E-value=2.9e-07 Score=66.67 Aligned_cols=97 Identities=21% Similarity=0.254 Sum_probs=72.5
Q ss_pred HHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcE
Q 032243 10 RFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPF 88 (144)
Q Consensus 10 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (144)
|-+.+.+.-+.+.|-+++++++.+|+ +...++.++...... .+..++++||+||.+..+...++........++++
T Consensus 68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v 144 (301)
T COG1162 68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPV 144 (301)
T ss_pred ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeE
Confidence 44555566677788888888888775 556667766666554 36678889999997655443345666777889999
Q ss_pred EEeecCCCCCHHHHHHHHHHH
Q 032243 89 METSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 89 ~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+.+|++++.+++++.+.+...
T Consensus 145 ~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 145 LFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EEecCcCcccHHHHHHHhcCC
Confidence 999999999999999877655
No 286
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.61 E-value=2.8e-07 Score=69.73 Aligned_cols=110 Identities=21% Similarity=0.212 Sum_probs=73.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC-
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE----------SFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTA- 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~- 68 (144)
.++|+|||...++-|.+++++++++|||+++++.+ .+.+-..++..+... .-...|++|++||.|++.
T Consensus 239 ~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~ 318 (389)
T PF00503_consen 239 RLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEE 318 (389)
T ss_dssp EEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHH
T ss_pred ceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHH
Confidence 37999999999999999999999999999986533 223223333333222 113689999999999731
Q ss_pred -----C-----------c-ccCHHHHHHHHHHc------------CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 69 -----N-----------K-VVSYETAKAFADEI------------GIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 69 -----~-----------~-~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+ . +-..+.+..+.... .+.++.++|.+..++..+|+.+.+.+
T Consensus 319 Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 319 KLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 1 1 02234444444321 12456888998889999988887653
No 287
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.59 E-value=2.6e-07 Score=70.20 Aligned_cols=108 Identities=15% Similarity=0.195 Sum_probs=73.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC-HHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~ 79 (144)
+|.||||+..|.--.+..+...|++++++|+.+-+-.. .+-.+..... ...+.|||+||+|....+... .++...
T Consensus 71 NIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfD 146 (603)
T COG1217 71 NIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFD 146 (603)
T ss_pred EEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHH
Confidence 58999999999998999999999999999987632111 1121222222 235668899999986543311 233344
Q ss_pred HHHH-------cCCcEEEeecCCC----------CCHHHHHHHHHHHHHH
Q 032243 80 FADE-------IGIPFMETSAKDS----------TNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~-------~~~~~~~~Sa~~~----------~~i~~l~~~i~~~~~~ 112 (144)
+.-. +++|++..|++.| .++..||+.|++++..
T Consensus 147 Lf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 147 LFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred HHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 4333 3469999999987 4678889888888743
No 288
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.57 E-value=3.8e-07 Score=67.11 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=66.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC----HH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK--QWLNEIDRYASDNVNKLLVGNKCDLTANKVVS----YE 75 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~ 75 (144)
+-||||++.|.+.+..=...||++|+++|... .-++..+ .++..+.. -..+++..||+||.+-.+-- ..
T Consensus 90 iADTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e~~F~~I~~ 164 (431)
T COG2895 90 IADTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSEEVFEAIVA 164 (431)
T ss_pred EecCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHhC----CcEEEEEEeeecccccCHHHHHHHHH
Confidence 56999999999888777888999999999843 2222222 23333333 25688889999996533211 23
Q ss_pred HHHHHHHHcCC---cEEEeecCCCCCHH
Q 032243 76 TAKAFADEIGI---PFMETSAKDSTNVE 100 (144)
Q Consensus 76 ~~~~~~~~~~~---~~~~~Sa~~~~~i~ 100 (144)
+...+++.+++ .++++||..|+|+-
T Consensus 165 dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 165 DYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHcCCCcceEEechhccCCccc
Confidence 44566777774 78999999999886
No 289
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.3e-06 Score=65.92 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=72.3
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
|.|+||++++-+.+-.-+...|.++||++.++--.... .+-+..+.... -...++++||+|..++..+ .+...+..
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qt-gEhL~iLdllg--i~~giivltk~D~~d~~r~-e~~i~~Il 129 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQT-GEHLLILDLLG--IKNGIIVLTKADRVDEARI-EQKIKQIL 129 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhh-HHHHHHHHhcC--CCceEEEEeccccccHHHH-HHHHHHHH
Confidence 68999999998877777889999999999965321111 11111121111 2345999999998654322 22333333
Q ss_pred HHc---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 82 DEI---GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 82 ~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
... ..+++.+|+++|+||+++.+.|.++..
T Consensus 130 ~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 130 ADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred hhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 333 358899999999999999999999984
No 290
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=3.4e-07 Score=66.70 Aligned_cols=105 Identities=22% Similarity=0.356 Sum_probs=71.3
Q ss_pred ceeccchhHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHH
Q 032243 2 QWDTAGQERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYET 76 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~ 76 (144)
|.|.||++-.. ...+.+ .|++++|++.+.+..--...+-+..+.... -..++++-||+|+.+.... +.++
T Consensus 90 fVDaPGHe~LM---ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 90 FVDAPGHETLM---ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EeeCCchHHHH---HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHH
Confidence 78999998544 333444 599999999988643333333233332222 3578999999999764332 2333
Q ss_pred HHHHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 77 AKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 77 ~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.+|.+.. +.|++++||..+.||+.+++.|.+.+.
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 44444422 469999999999999999999998874
No 291
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.46 E-value=1e-06 Score=60.90 Aligned_cols=80 Identities=21% Similarity=0.156 Sum_probs=53.2
Q ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE--EEEEeCCCCCCCcccCHHHHHHHHHH--cCCcEEEeecCCCC
Q 032243 22 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLVGNKCDLTANKVVSYETAKAFADE--IGIPFMETSAKDST 97 (144)
Q Consensus 22 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~ 97 (144)
+|.+|.|+|..+-.+... .... .+.. ++++||.|+.+.............+. .+.+++++||++|.
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~--------qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~ 182 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGP--------GITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKE 182 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHh--------HhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 688999999986544221 1111 2333 89999999964212223333334443 34699999999999
Q ss_pred CHHHHHHHHHHHHH
Q 032243 98 NVEQAFMAMAASIK 111 (144)
Q Consensus 98 ~i~~l~~~i~~~~~ 111 (144)
|++++|+++.+.++
T Consensus 183 gi~el~~~i~~~~~ 196 (199)
T TIGR00101 183 GLDTVIDWIEHYAL 196 (199)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999987653
No 292
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=8e-07 Score=66.57 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=64.9
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH---
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--- 74 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--- 74 (144)
|.|+||++.|-..+-.-...+|++|||+|+.+.+ .|..- +.--..+......-...++.+||+|+.+-.+.-.
T Consensus 89 IiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei 168 (428)
T COG5256 89 IIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEI 168 (428)
T ss_pred EeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHH
Confidence 6899999999987777788999999999988753 11100 0001111222222356788899999864222111
Q ss_pred -HHHHHHHHHcCC-----cEEEeecCCCCCHHHH
Q 032243 75 -ETAKAFADEIGI-----PFMETSAKDSTNVEQA 102 (144)
Q Consensus 75 -~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~l 102 (144)
.++..+.+..|+ +|+++|+..|.|+.+.
T Consensus 169 ~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 169 VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 233344555554 6999999999998753
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.41 E-value=5.7e-06 Score=61.31 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=61.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKA 79 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~ 79 (144)
|.||+|...-. ......+|.++++.+....+ +++.....+.. ..-++|+||.|+.+.... ...+...
T Consensus 153 iieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd---~iq~~k~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~el~~ 221 (332)
T PRK09435 153 LVETVGVGQSE---TAVAGMVDFFLLLQLPGAGD---ELQGIKKGIME-----LADLIVINKADGDNKTAARRAAAEYRS 221 (332)
T ss_pred EEECCCCccch---hHHHHhCCEEEEEecCCchH---HHHHHHhhhhh-----hhheEEeehhcccchhHHHHHHHHHHH
Confidence 67888865222 12466799999997644333 33222221211 234899999998643321 1122222
Q ss_pred HHHH-------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FADE-------IGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~-------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.... +..+++.+||.++.|++++++.|...+..
T Consensus 222 ~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 222 ALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred HHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2221 11389999999999999999999998763
No 294
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.34 E-value=4.1e-06 Score=61.13 Aligned_cols=51 Identities=24% Similarity=0.182 Sum_probs=40.3
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.+|.++|.||+|+.. .++...+.+.. ..+++||..+.|++++.+.|.+.+.
T Consensus 239 Y~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 239 YKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 489999999999854 23333343333 7899999999999999999999985
No 295
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.30 E-value=8.5e-06 Score=61.84 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=36.2
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHH-HHHHHHHHH
Q 032243 54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ-AFMAMAASI 110 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-l~~~i~~~~ 110 (144)
..|+++|+||.|+.... .....+.+..+..++++||..+.++.+ +++.+.+.+
T Consensus 217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 48999999999974321 112222222345789999999999988 666666654
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.27 E-value=8.5e-06 Score=56.51 Aligned_cols=56 Identities=23% Similarity=0.229 Sum_probs=40.7
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 55 VNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.|.++++||.|+.+.............+..+ .+++++||+++.|++++|+++....
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999996432222233443444433 7999999999999999999998753
No 297
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.26 E-value=8.4e-06 Score=62.65 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=70.1
Q ss_pred CceeccchhHH-------hhh--hhhhhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERF-------RTI--TSSYYRGAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~-------~~~--~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
|+.||||..+- -.| .....+=-.++++++|++....+ .+--.++..+.-.. .+.|+|+|+||+|+..+
T Consensus 218 QViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 218 QVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRP 296 (620)
T ss_pred eecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCc
Confidence 67899996321 111 12223345788999999876433 32223444443333 26899999999999877
Q ss_pred cccCHHHH--HHH-HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 70 KVVSYETA--KAF-ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 70 ~~~~~~~~--~~~-~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
..++.+.. .+. ....+++++.+|+.+.+|+.++....-+.+.
T Consensus 297 edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 297 EDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred cccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHH
Confidence 77765442 222 3333479999999999999987776555544
No 298
>PRK00007 elongation factor G; Reviewed
Probab=98.25 E-value=8.4e-06 Score=66.01 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=57.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+|.||||+.+|.......+..+|++++|+|...-....+ ...+..+... ..|.++++||+|+.... . .....++
T Consensus 78 ~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~-~-~~~~~~i 151 (693)
T PRK00007 78 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGAD-F-YRVVEQI 151 (693)
T ss_pred EEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCC-H-HHHHHHH
Confidence 378999999887767777889999999999875432222 2233333333 47899999999986432 1 2333344
Q ss_pred HHHcCC----cEEEeecCCC
Q 032243 81 ADEIGI----PFMETSAKDS 96 (144)
Q Consensus 81 ~~~~~~----~~~~~Sa~~~ 96 (144)
.+.++. ..+++|+..+
T Consensus 152 ~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 152 KDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHhCCCeeeEEecCccCCc
Confidence 444442 3456666554
No 299
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.21 E-value=1e-05 Score=57.62 Aligned_cols=118 Identities=24% Similarity=0.212 Sum_probs=76.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH-------HHHHHHHHHHHH---HHh-cCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-------SFNNVKQWLNEI---DRY-ASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~---~~~-~~~~~p~ilv~nK~Dl~~~ 69 (144)
+++|+|||...+.-|-.++++.-++|||+..++.+ +-+.+++.+..+ +.. -...+.+|+++||.|+..+
T Consensus 205 hMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDllae 284 (379)
T KOG0099|consen 205 HMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE 284 (379)
T ss_pred eeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHH
Confidence 47999999999999999999999999999876532 233343333333 221 1135788999999998422
Q ss_pred cccC------------------------------HHHHHHHHHHc--------C-----CcEEEeecCCCCCHHHHHHHH
Q 032243 70 KVVS------------------------------YETAKAFADEI--------G-----IPFMETSAKDSTNVEQAFMAM 106 (144)
Q Consensus 70 ~~~~------------------------------~~~~~~~~~~~--------~-----~~~~~~Sa~~~~~i~~l~~~i 106 (144)
+... ...+..+.... + +....++|.+-++|..+|+..
T Consensus 285 Ki~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFnDc 364 (379)
T KOG0099|consen 285 KILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC 364 (379)
T ss_pred HHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHHHHH
Confidence 1000 00011111110 0 234678888889999999999
Q ss_pred HHHHHHhhccCC
Q 032243 107 AASIKDRMASQP 118 (144)
Q Consensus 107 ~~~~~~~~~~~~ 118 (144)
.+++..-...+.
T Consensus 365 rdiIqr~hlrqy 376 (379)
T KOG0099|consen 365 RDIIQRMHLRQY 376 (379)
T ss_pred HHHHHHHHHHHh
Confidence 999876555443
No 300
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.17 E-value=2.7e-06 Score=69.08 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=45.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+||||||+.+|.......+..+|++++|+|..+.-.... ...+..... ...|+++++||+|..
T Consensus 89 ~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 89 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred EEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH---cCCCEEEEEEChhcc
Confidence 489999999998888888999999999999876321121 122222222 246889999999984
No 301
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.16 E-value=1.2e-05 Score=58.89 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=59.7
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH--HH---
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ET--- 76 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~--- 76 (144)
|.||+|.-... ...++.+|.++++.+... .+++..+...+. ..|.++++||+|+........ ..
T Consensus 131 iidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~~~~~ 199 (300)
T TIGR00750 131 IVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARLMLAL 199 (300)
T ss_pred EEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHHHHHH
Confidence 67888753211 234667888888865432 233333333221 367899999999864322100 00
Q ss_pred -HHHHHHH-cC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 77 -AKAFADE-IG--IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 77 -~~~~~~~-~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
...+... .+ .+++++||+++.|+++++++|...+.
T Consensus 200 ~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 200 ALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0111111 12 36899999999999999999998754
No 302
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.16 E-value=6.1e-06 Score=59.76 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=43.1
Q ss_pred CCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCcEEEeecCC
Q 032243 21 GAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADEIGIPFMETSAKD 95 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~ 95 (144)
++|+++++++.+... +... ...+..+.. .+|+++|+||+|+....+. ......+.+...+++++......
T Consensus 114 rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~----~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 114 RVHACLYFIEPTGHG-LKPLDIEFMKRLSK----RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred ceEEEEEEEeCCCCC-CCHHHHHHHHHHhc----cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 478888888876422 1111 222333321 4899999999998653332 23445666777788888876543
No 303
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.11 E-value=3.1e-05 Score=54.29 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=48.8
Q ss_pred CceeccchhHHhhh-----hhhhhcCCCEEEEEEeCCCHHHH---HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTI-----TSSYYRGAHGIIIVYDVTDQESF---NNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~-----~~~~~~~~d~~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
++||+|||+.|.+. ....+.+.+++++|||+...+-. ...+.-+..+.++++ ...+++.+.|.|+..
T Consensus 56 nlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 56 NLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQ 130 (295)
T ss_pred ehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcc
Confidence 47999999876442 34567889999999999876533 334445556666654 577899999999954
No 304
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.10 E-value=7.3e-05 Score=51.29 Aligned_cols=109 Identities=14% Similarity=0.186 Sum_probs=64.4
Q ss_pred ceeccchhHH-------hh-h---hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 032243 2 QWDTAGQERF-------RT-I---TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTA 68 (144)
Q Consensus 2 i~Dt~G~~~~-------~~-~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~ 68 (144)
++||||.... .. + +.....+.|+++||+++.+. +-.+ ...+..+...... -.++++++|+.|...
T Consensus 53 viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~-t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 53 VIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF-TEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred EEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc-CHHH-HHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 7899995322 11 1 12234678999999998762 2121 2333333333221 257899999999765
Q ss_pred CcccC------HHHHHHHHHHcCCcEEEee-----cCCCCCHHHHHHHHHHHHHH
Q 032243 69 NKVVS------YETAKAFADEIGIPFMETS-----AKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 69 ~~~~~------~~~~~~~~~~~~~~~~~~S-----a~~~~~i~~l~~~i~~~~~~ 112 (144)
+..+. ......+.+..+-.++.++ +..+.++.+|++.|.+++.+
T Consensus 131 ~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 131 GGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 43211 1334445555454454444 45678899999998888864
No 305
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.07 E-value=2.9e-05 Score=55.67 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=72.0
Q ss_pred CceeccchhH-------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---
Q 032243 1 MQWDTAGQER-------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--- 70 (144)
Q Consensus 1 qi~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--- 70 (144)
.||||||... ++.....++...|.++++.+..|+.---+. ..+..+..... +.++++++|..|...+.
T Consensus 90 ~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W 167 (296)
T COG3596 90 VLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGL-DKRVLFVVTQADRAEPGREW 167 (296)
T ss_pred EEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhcc-CceeEEEEehhhhhcccccc
Confidence 3899998533 777888889999999999999887522221 22333333221 37899999999974331
Q ss_pred ----ccCHHHHHHHHH----Hc------CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 71 ----VVSYETAKAFAD----EI------GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 71 ----~~~~~~~~~~~~----~~------~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
........++.+ .. -.|++.++...+.|++.+...++.++.
T Consensus 168 ~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 168 DSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111111111211 11 137888899999999999999999885
No 306
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.07 E-value=8.9e-05 Score=53.33 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=60.9
Q ss_pred ceeccchhH---H---hhh-hhhhh-cCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 032243 2 QWDTAGQER---F---RTI-TSSYY-RGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 70 (144)
Q Consensus 2 i~Dt~G~~~---~---~~~-~~~~~-~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 70 (144)
++|||||-+ | ... ...+. ...-++++++|... +.+|- .+++..-........|++++.||.|+.+..
T Consensus 120 liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM--SNMlYAcSilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 120 LIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM--SNMLYACSILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred EEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH--HHHHHHHHHHHhccCCeEEEEecccccccH
Confidence 689999853 1 111 22222 22456778888543 33332 222222212222358999999999985431
Q ss_pred ccC--------HHHHHH---------HHHH---------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 71 VVS--------YETAKA---------FADE---------IGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 71 ~~~--------~~~~~~---------~~~~---------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
-.. .+++.. +... .++..+.+|+.+|.|.+++|..+-..+.+
T Consensus 198 fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 198 FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 100 011111 0000 13578999999999999999988776643
No 307
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.00 E-value=3.6e-05 Score=60.08 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=67.5
Q ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-cEEEeecCCCCC
Q 032243 20 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTN 98 (144)
Q Consensus 20 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 98 (144)
..+|+++++||++++.+|.-+.......... ...|+++|++|+|+....+.......+++..+++ +.+.+|.++.-.
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS 571 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence 4589999999999999998776655554433 4699999999999954332222222678888887 456667665334
Q ss_pred HHHHHHHHHHHHHHhh
Q 032243 99 VEQAFMAMAASIKDRM 114 (144)
Q Consensus 99 i~~l~~~i~~~~~~~~ 114 (144)
.++|..|+.+...+.
T Consensus 572 -~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 572 -NELFIKLATMAQYPH 586 (625)
T ss_pred -chHHHHHHHhhhCCC
Confidence 899999999988655
No 308
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.98 E-value=3.5e-05 Score=48.39 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=53.9
Q ss_pred hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecC
Q 032243 15 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK 94 (144)
Q Consensus 15 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 94 (144)
...+.+.++.++++++.++..+++.+ |...+......+.|.++++||.|+........+.. ..++++|++
T Consensus 40 ~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~ 109 (124)
T smart00010 40 DPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAK 109 (124)
T ss_pred cccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCC
Confidence 45567789999999999999988765 66666554445688999999999843223322222 245578888
Q ss_pred CCCCHH
Q 032243 95 DSTNVE 100 (144)
Q Consensus 95 ~~~~i~ 100 (144)
++.|+.
T Consensus 110 ~~~~~~ 115 (124)
T smart00010 110 TPEEGE 115 (124)
T ss_pred Ccchhh
Confidence 988874
No 309
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.90 E-value=0.00017 Score=54.12 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=63.3
Q ss_pred ceeccchhHHhhh-hhhhh-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHH
Q 032243 2 QWDTAGQERFRTI-TSSYY-RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~-~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~ 77 (144)
|.||.|+++|.+. .+..+ ...|..++++.+++-.+-- .++-+..... -..|+|++.||+|+.+..... .+++
T Consensus 205 fVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~~ei 280 (527)
T COG5258 205 FVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKIDMVPDDRFQGVVEEI 280 (527)
T ss_pred EEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecccCcHHHHHHHHHHH
Confidence 7899999998764 33333 5689999999887743211 1221111111 158999999999996542210 1111
Q ss_pred HHH--------------------HH--HcC---CcEEEeecCCCCCHHHHHHHHHH
Q 032243 78 KAF--------------------AD--EIG---IPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 78 ~~~--------------------~~--~~~---~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
..+ +. ..+ .|+|.+|+.+|+|++-+.+.+..
T Consensus 281 ~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 281 SALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred HHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 111 11 111 38999999999999877665543
No 310
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=2.7e-05 Score=59.71 Aligned_cols=111 Identities=22% Similarity=0.222 Sum_probs=66.9
Q ss_pred ceeccchhH-Hhh--------hhhhhhcCCCEEEEEEeCC--CHHHHHHHHHHHHHHHHh------cCCCCcEEEEEeCC
Q 032243 2 QWDTAGQER-FRT--------ITSSYYRGAHGIIIVYDVT--DQESFNNVKQWLNEIDRY------ASDNVNKLLVGNKC 64 (144)
Q Consensus 2 i~Dt~G~~~-~~~--------~~~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~------~~~~~p~ilv~nK~ 64 (144)
+.||+|..+ -+. -.+.-++.+|+++||+|+. +..+-..+.+.+.....- .....+++++.||.
T Consensus 320 L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~ 399 (531)
T KOG1191|consen 320 LSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKS 399 (531)
T ss_pred EEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechh
Confidence 679999765 111 1244467899999999993 333333333444443221 11247899999999
Q ss_pred CCCCC-cccCHHHHHHHHHHcC---Cc-EEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 65 DLTAN-KVVSYETAKAFADEIG---IP-FMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 65 Dl~~~-~~~~~~~~~~~~~~~~---~~-~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
|+... .+..... ..+....+ .+ +.++|+++++|++.+.+.+...+...
T Consensus 400 D~~s~~~~~~~~~-~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 400 DLVSKIPEMTKIP-VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred hccCccccccCCc-eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 98644 1111101 11111122 34 45599999999999999998887643
No 311
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00011 Score=54.46 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=59.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCccc---CHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANKVV---SYETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---~~~~~ 77 (144)
++|+||+...-+..-.-..=.|..++|+|..--..-....- ++..+ . ....++|+||+|..++..- -.+..
T Consensus 74 lvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--~---c~klvvvinkid~lpE~qr~ski~k~~ 148 (522)
T KOG0461|consen 74 LVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--L---CKKLVVVINKIDVLPENQRASKIEKSA 148 (522)
T ss_pred EEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--h---ccceEEEEeccccccchhhhhHHHHHH
Confidence 68999997544333222333689999999764322222222 11112 1 2456888999998654321 11222
Q ss_pred HHH---HHHcC----CcEEEeecCCC----CCHHHHHHHHHHHHH
Q 032243 78 KAF---ADEIG----IPFMETSAKDS----TNVEQAFMAMAASIK 111 (144)
Q Consensus 78 ~~~---~~~~~----~~~~~~Sa~~~----~~i~~l~~~i~~~~~ 111 (144)
.++ .+..+ .|++++||..| ++|.++.+.+...+.
T Consensus 149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 222 23332 59999999999 556666555555543
No 312
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.89 E-value=3.1e-05 Score=64.06 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=46.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+|+||||+.+|.......+..+|++|+|+|+.+--.... ...+..... .+.|+++++||+|..
T Consensus 101 nliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred EEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH---CCCCEEEEEECCccc
Confidence 378999999998888888899999999999876422221 223333322 258999999999985
No 313
>PTZ00416 elongation factor 2; Provisional
Probab=97.87 E-value=2.8e-05 Score=64.21 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=46.7
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
|.||||+.+|.......+..+|++|+|+|+.+.-... ....+..+... +.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQE---RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHHc---CCCEEEEEEChhhh
Confidence 7899999999888888899999999999987642222 22333333332 47999999999985
No 314
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.87 E-value=0.0001 Score=46.13 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=36.1
Q ss_pred ceeccchhH----------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 032243 2 QWDTAGQER----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 63 (144)
Q Consensus 2 i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK 63 (144)
|+||||... +....+. +..+|++++|+|.++... .....++..+. ...|+++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 799999521 2223344 488999999999877321 22233334442 35899999998
No 315
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.83 E-value=0.00017 Score=50.73 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=50.7
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCcccCH---HHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDLTANKVVSY---ETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~---~~~ 77 (144)
++||||.. ..+. ...+.+|++++|+|.+......+ ..++..+... ..|. ++|+||.|+......-. ..+
T Consensus 87 ~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l 159 (225)
T cd01882 87 FIECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRL 159 (225)
T ss_pred EEeCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHH
Confidence 67999864 3333 34678999999999875432222 2233333322 3564 55999999864321101 111
Q ss_pred HH-HHHH--cCCcEEEeecCCCC
Q 032243 78 KA-FADE--IGIPFMETSAKDST 97 (144)
Q Consensus 78 ~~-~~~~--~~~~~~~~Sa~~~~ 97 (144)
.. +... .+.+++.+||++..
T Consensus 160 ~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 160 KHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHHHhhCCCCcEEEEeeccCC
Confidence 11 2211 13589999999873
No 316
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.79 E-value=3.7e-05 Score=62.69 Aligned_cols=62 Identities=26% Similarity=0.249 Sum_probs=45.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
|+||||+.+|.......+..+|++++|+|....-... ....+...... ..|.++++||+|..
T Consensus 91 liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 91 LIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred EEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc---CCCeEEEEECchhh
Confidence 7899999999888888899999999999987642222 22223322222 36789999999974
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.78 E-value=0.00012 Score=51.93 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=51.0
Q ss_pred ceeccchh-------------HHhhhhhhhhcC-CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQE-------------RFRTITSSYYRG-AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~-------------~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
|+||||.. ....+...|+++ .+.+++|+|++..-.-.+...+...+. ....++++|+||.|..
T Consensus 129 LIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK~D~~ 205 (240)
T smart00053 129 LIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITKLDLM 205 (240)
T ss_pred EEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEECCCCC
Confidence 68999863 234467778884 569999998764221112222222222 2358999999999986
Q ss_pred CCcccCHHHHHHHHHH----cCCcEEEeecCCCCC
Q 032243 68 ANKVVSYETAKAFADE----IGIPFMETSAKDSTN 98 (144)
Q Consensus 68 ~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~ 98 (144)
.+.. +...+... ++..|+.+--.....
T Consensus 206 ~~~~----~~~~~~~~~~~~l~~g~~~v~nr~~~d 236 (240)
T smart00053 206 DEGT----DARDILENKLLPLRRGYIGVVNRSQKD 236 (240)
T ss_pred CccH----HHHHHHhCCccccCCCEEEEECCChHH
Confidence 4321 13333332 234566665544433
No 318
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=3.1e-05 Score=60.38 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=63.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc---
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN---NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--- 72 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--- 72 (144)
|.|+||+..|.+.+-.-...+|++++|+|++--. .|+ .+++ ...+.+... -...+|.+||.|+..=.+-
T Consensus 259 liDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~Lg-i~qlivaiNKmD~V~Wsq~RF~ 336 (603)
T KOG0458|consen 259 LIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSLG-ISQLIVAINKMDLVSWSQDRFE 336 (603)
T ss_pred EecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHcC-cceEEEEeecccccCccHHHHH
Confidence 6899999999887766677899999999986421 222 1122 122222221 3567889999998642111
Q ss_pred -CHHHHHHHH-HHcC-----CcEEEeecCCCCCHHHH
Q 032243 73 -SYETAKAFA-DEIG-----IPFMETSAKDSTNVEQA 102 (144)
Q Consensus 73 -~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~~l 102 (144)
-...+..+. +..| +.|+++|+.+|+|+...
T Consensus 337 eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 337 EIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 122334444 4444 37999999999988754
No 319
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=3.7e-05 Score=56.04 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=67.5
Q ss_pred ceeccchhHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHH
Q 032243 2 QWDTAGQERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YET 76 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~ 76 (144)
|.|+||++-.. ...+.+ .|++++++..+++.+--...+-+..+.... -..++++-||+||..+.... .++
T Consensus 129 fVDCPGHDiLM---aTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 129 FVDCPGHDILM---ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred eccCCchHHHH---HHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhHHHHHHHHHH
Confidence 68999987543 333333 488888888776432222222233332222 25689999999996544321 223
Q ss_pred HHHHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 77 AKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 77 ~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
++.|.... +.|++++||.-++||+.+.+.|...+.
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 34444432 469999999999999999999998874
No 320
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00011 Score=53.35 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=57.4
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC---HHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETA 77 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~ 77 (144)
..|+||+..|-+.+-.-....|+.|+|++++|-+--.. .+-+-..++. ..| +++++||.|+.+..+.. ..+.
T Consensus 79 hVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEv 154 (394)
T COG0050 79 HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEV 154 (394)
T ss_pred eccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHH
Confidence 36999999998876666677899999999987432121 1111111122 244 56679999997644321 2355
Q ss_pred HHHHHHcCC-----cEEEeecCC
Q 032243 78 KAFADEIGI-----PFMETSAKD 95 (144)
Q Consensus 78 ~~~~~~~~~-----~~~~~Sa~~ 95 (144)
+.+...+++ |++.-||..
T Consensus 155 reLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 155 RELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHHHHHcCCCCCCcceeechhhh
Confidence 667777764 677777664
No 321
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.72 E-value=0.00021 Score=39.12 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=27.5
Q ss_pred cCCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 20 RGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 20 ~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
+=.++++|++|++.... .++-..++..++.... +.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 34799999999998653 3443445666665553 589999999998
No 322
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.69 E-value=0.00014 Score=56.13 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=51.9
Q ss_pred hHHhhhhhhhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 032243 9 ERFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 86 (144)
Q Consensus 9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (144)
+-|+.+|+- ++++|+||.++|+.++--|. ++..+...+. +..-.+|++||+||.++... ..-..+....++
T Consensus 163 E~WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDLl~~~qr--~aWa~YF~~~ni 235 (562)
T KOG1424|consen 163 EIWRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADLLPPEQR--VAWAEYFRQNNI 235 (562)
T ss_pred HHHHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhcCCHHHH--HHHHHHHHhcCc
Confidence 345666665 89999999999999875443 3333333332 23567999999999753221 122223445568
Q ss_pred cEEEeecCC
Q 032243 87 PFMETSAKD 95 (144)
Q Consensus 87 ~~~~~Sa~~ 95 (144)
+++..||..
T Consensus 236 ~~vf~SA~~ 244 (562)
T KOG1424|consen 236 PVVFFSALA 244 (562)
T ss_pred eEEEEeccc
Confidence 999999886
No 323
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.69 E-value=0.0001 Score=49.05 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=41.4
Q ss_pred ceeccchhH----HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 032243 2 QWDTAGQER----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 64 (144)
Q Consensus 2 i~Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 64 (144)
|+||||... ...++..|+..+|++|+|.+.+...+-.+...+....... ...+++|.||+
T Consensus 105 lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 105 LVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred EEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 789999632 3467888999999999999998854444444444444333 34589999985
No 324
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.63 E-value=0.00015 Score=49.57 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=41.9
Q ss_pred EEEEeCCCCCCCcccCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 58 LLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 58 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
++|+||.||.+.-....+...+-++..+ .+++.+|+++|+|++++++++....
T Consensus 146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 8999999997655555565555555554 7999999999999999999887653
No 325
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.63 E-value=6.8e-05 Score=52.74 Aligned_cols=114 Identities=21% Similarity=0.221 Sum_probs=75.7
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHH-------HHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCc
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES-------FNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANK 70 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~ 70 (144)
+.|+|||...++-|-+++++.-.++|++.++.-+. -+.+.+....+...-. .+.++|+++||.|+..++
T Consensus 203 mvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEek 282 (359)
T KOG0085|consen 203 MVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK 282 (359)
T ss_pred eeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhh
Confidence 68999999999999999999999999987654321 1222232333322211 267899999999986432
Q ss_pred c----------------cCHHHHHHHHHHc----C------CcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 71 V----------------VSYETAKAFADEI----G------IPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 71 ~----------------~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
. -..+.++.++..+ + +.-..++|.+-+||.-+|..+.+.+.+...
T Consensus 283 I~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 283 ILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 1 1122233333222 2 234678899999999999999998876544
No 326
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.57 E-value=0.00021 Score=52.06 Aligned_cols=54 Identities=24% Similarity=0.229 Sum_probs=38.6
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCcEEEeecCCCCCHHHHHHHHHH
Q 032243 55 VNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
..-++|+||+|+.+......+......+.. ..+++++||++|+|+++++++|..
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 566999999999642221123333333333 468999999999999999999876
No 327
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.0003 Score=53.58 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=51.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+|.||||++.|..-....+.-+|.+++|+|+..-- -.....++. +- ...++|++=++||.|-....+ .+-+.++
T Consensus 84 NLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-E~qT~KLfe-Vc--rlR~iPI~TFiNKlDR~~rdP--~ELLdEi 157 (528)
T COG4108 84 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-EPQTLKLFE-VC--RLRDIPIFTFINKLDREGRDP--LELLDEI 157 (528)
T ss_pred eccCCCCccccchhHHHHHHhhheeeEEEecccCc-cHHHHHHHH-HH--hhcCCceEEEeeccccccCCh--HHHHHHH
Confidence 57899999999988888888899999999986310 011111111 22 223699999999999644333 3333334
Q ss_pred HHHcCC
Q 032243 81 ADEIGI 86 (144)
Q Consensus 81 ~~~~~~ 86 (144)
.+.+++
T Consensus 158 E~~L~i 163 (528)
T COG4108 158 EEELGI 163 (528)
T ss_pred HHHhCc
Confidence 444443
No 328
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00011 Score=58.47 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=47.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
+|.||||+-.|..-....+.-+|++++|+|..+--.++. ..++.+.-. ...|+++++||.|.
T Consensus 200 nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 200 NILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ---NRLPIVVVINKVDR 261 (971)
T ss_pred eeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh---ccCcEEEEEehhHH
Confidence 588999999998877788899999999999987655553 333333322 25899999999996
No 329
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00037 Score=56.44 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=46.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+|+||||+-+|..-....++=+|++++|+|..+--... ....|.....+ .+|.++++||.|..
T Consensus 79 NlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~~---~vp~i~fiNKmDR~ 141 (697)
T COG0480 79 NLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADKY---GVPRILFVNKMDRL 141 (697)
T ss_pred EEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhhc---CCCeEEEEECcccc
Confidence 58999999999998888899999999999987531111 12223333333 58999999999974
No 330
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.40 E-value=0.0028 Score=42.74 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=54.2
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
|+|||+... ......+..+|.+++++..+. .+...+..++..+... +.++.+|+||.|.... ...+...++
T Consensus 97 iiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~~~~~~~ 167 (179)
T cd03110 97 IIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAEEIEDYC 167 (179)
T ss_pred EEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHHHHHHHH
Confidence 689996542 233456788999999998874 3555666666655543 3678999999996432 245566677
Q ss_pred HHcCCcEEE
Q 032243 82 DEIGIPFME 90 (144)
Q Consensus 82 ~~~~~~~~~ 90 (144)
+..+++++.
T Consensus 168 ~~~~~~vl~ 176 (179)
T cd03110 168 EEEGIPILG 176 (179)
T ss_pred HHcCCCeEE
Confidence 777877653
No 331
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.39 E-value=0.00051 Score=46.37 Aligned_cols=44 Identities=30% Similarity=0.209 Sum_probs=27.4
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 23 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 23 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
|++++|+|+.++.+..+ ..+...+. ....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987532211 12222211 1122479999999999954
No 332
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.35 E-value=0.01 Score=44.02 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=46.0
Q ss_pred CcEEEEEeCCCCC----CCccc-------CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 55 VNKLLVGNKCDLT----ANKVV-------SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 55 ~p~ilv~nK~Dl~----~~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+|++||.+|+|.. .+.+. -...++.||..+|..++.+|++...|++-+...|...+...
T Consensus 223 i~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 223 IPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred CcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 8999999999982 22221 12345777888899999999999999999999998887643
No 333
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0012 Score=49.66 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=61.9
Q ss_pred ceeccchhHHhhhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc-------
Q 032243 2 QWDTAGQERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV------- 72 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~------- 72 (144)
|.|.+|+.+|....-+-+. ..|.+++|++++.--... ..+-+..+... ++|++++.+|+|+..+..+
T Consensus 253 fiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~~~tv~~l 328 (591)
T KOG1143|consen 253 FIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGLKKTVKDL 328 (591)
T ss_pred EeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhHHHHHHHH
Confidence 6899999999876544443 368888888876432211 22223333333 5999999999999654221
Q ss_pred -----------------CHHHHHHHHHHc---C-CcEEEeecCCCCCHHHHHHH
Q 032243 73 -----------------SYETAKAFADEI---G-IPFMETSAKDSTNVEQAFMA 105 (144)
Q Consensus 73 -----------------~~~~~~~~~~~~---~-~~~~~~Sa~~~~~i~~l~~~ 105 (144)
+..++...+... + .|+|.+|..+|+|+.-+...
T Consensus 329 ~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 329 SNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 112222222221 2 38999999999998765543
No 334
>PTZ00258 GTP-binding protein; Provisional
Probab=97.20 E-value=0.0039 Score=47.40 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCcEEEEEeCC--CC-CCCcccCHHHHHHHHHHc-CCcEEEeecCCCC
Q 032243 54 NVNKLLVGNKC--DL-TANKVVSYETAKAFADEI-GIPFMETSAKDST 97 (144)
Q Consensus 54 ~~p~ilv~nK~--Dl-~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 97 (144)
..|+++++|+. |+ ..... ..+.+..++... +.+++.+||+-..
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~-~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNK-WLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhcccchH-HHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 48999999999 76 22221 234445555555 4789999986554
No 335
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.002 Score=47.83 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=56.2
Q ss_pred eeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc---CHHHHHH
Q 032243 3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV---SYETAKA 79 (144)
Q Consensus 3 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---~~~~~~~ 79 (144)
.|+||+..|-+.+-.-...-|++|+|+..+|-.--. .++-+...++.. -..+++++||.|+.+..+. -+-++++
T Consensus 122 ~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RE 198 (449)
T KOG0460|consen 122 TDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRE 198 (449)
T ss_pred CCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHH
Confidence 489999988876655556689999999998843211 222111122222 2457888999999744331 1335566
Q ss_pred HHHHcCC-----cEEEeecC
Q 032243 80 FADEIGI-----PFMETSAK 94 (144)
Q Consensus 80 ~~~~~~~-----~~~~~Sa~ 94 (144)
+...+++ |++.-||.
T Consensus 199 lLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHcCCCCCCCCeeecchh
Confidence 7777764 78877654
No 336
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.14 E-value=0.0025 Score=46.87 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=39.4
Q ss_pred CceeccchhHHhh-------hhhhhh--cCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRT-------ITSSYY--RGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASD--NVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~-------~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~ 68 (144)
++|||||..+... ....++ .+.|+++||..++... +... ...+..+...... -.+++|++|+.|..+
T Consensus 89 ~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 89 NIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 4899999754321 122222 2689999996654321 1111 2233333332211 256899999999765
Q ss_pred CcccC
Q 032243 69 NKVVS 73 (144)
Q Consensus 69 ~~~~~ 73 (144)
+...+
T Consensus 168 pd~~~ 172 (313)
T TIGR00991 168 PDGLE 172 (313)
T ss_pred CCCCC
Confidence 44333
No 337
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.10 E-value=0.0096 Score=40.07 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=70.4
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 100 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 100 (144)
+.|.++|++|.+..-++..++.-+..+....--.. +.++.+-........+...++.+++..++.|++.+.-.+.++..
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 47999999999999999999887777733222223 34444444444556677889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 032243 101 QAFMAMAASIKD 112 (144)
Q Consensus 101 ~l~~~i~~~~~~ 112 (144)
.+-+.+.+.++.
T Consensus 143 ~lAqRLL~~lqi 154 (176)
T PF11111_consen 143 SLAQRLLRMLQI 154 (176)
T ss_pred HHHHHHHHHHHH
Confidence 998888888764
No 338
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.09 E-value=0.0078 Score=46.88 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=44.6
Q ss_pred CcEEEEEeCCCCCC----Ccc-------cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 55 VNKLLVGNKCDLTA----NKV-------VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 55 ~p~ilv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+|++||.+|.|... ... .-.+.++.++-.+|..+|.+|++...+++.++..|...+...
T Consensus 197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred cceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence 79999999999631 111 112345667778889999999999999999998887777643
No 339
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.08 E-value=0.0026 Score=49.93 Aligned_cols=99 Identities=22% Similarity=0.453 Sum_probs=72.5
Q ss_pred hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHc-CCcEEE
Q 032243 15 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETAKAFADEI-GIPFME 90 (144)
Q Consensus 15 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~ 90 (144)
-..|...+|++||||.+.+..+|..+..+...+..+.. ..+|+++++++.-.. ..+.+.....+.+...+ ...+|+
T Consensus 89 ~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~e 168 (749)
T KOG0705|consen 89 DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYE 168 (749)
T ss_pred hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceee
Confidence 35677889999999999999999988776666644432 357888888865431 23334444555554444 578999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHh
Q 032243 91 TSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 91 ~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+++.+|.++...|+.+...+...
T Consensus 169 t~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 169 TCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred cchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998887654
No 340
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.08 E-value=0.0022 Score=47.60 Aligned_cols=95 Identities=26% Similarity=0.298 Sum_probs=61.7
Q ss_pred cch-hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 032243 6 AGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84 (144)
Q Consensus 6 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 84 (144)
+|+ .++.......+..+|+++-|+|+.++.+... ..+..... ..+.++|+||.||.+... ..+-...+....
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~~ 90 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKKEE 90 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHhcC
Confidence 454 4677777888899999999999998754332 11112221 356699999999965433 222333333334
Q ss_pred CCcEEEeecCCCCCHHHHHHHHH
Q 032243 85 GIPFMETSAKDSTNVEQAFMAMA 107 (144)
Q Consensus 85 ~~~~~~~Sa~~~~~i~~l~~~i~ 107 (144)
+...+.+++..+.+...+...+.
T Consensus 91 ~~~~~~v~~~~~~~~~~i~~~~~ 113 (322)
T COG1161 91 GIKPIFVSAKSRQGGKKIRKALE 113 (322)
T ss_pred CCccEEEEeecccCccchHHHHH
Confidence 66778899998888887775333
No 341
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.00077 Score=50.55 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=45.3
Q ss_pred ceeccchhH-----------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 2 QWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 2 i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
|+||||.-. |.....=|.+++|.++++||..--+--++....+..++.+. -.+-||+||+|..+.
T Consensus 151 iVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E---dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 151 IVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE---DKIRVVLNKADQVDT 226 (532)
T ss_pred eeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc---ceeEEEeccccccCH
Confidence 789999522 44456777899999999999754333344455556665544 457889999998653
No 342
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.002 Score=51.04 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=44.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+++||||+-.|..-.+..++-.|++++++|...--- ......+....++ ++|.+.++||.|-.
T Consensus 107 NiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~ry---~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 107 NIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKRY---NVPRICFINKMDRM 169 (721)
T ss_pred EEecCCCceeEEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHhc---CCCeEEEEehhhhc
Confidence 579999999988877888888999999998654210 0111223334444 48999999999963
No 343
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0058 Score=43.53 Aligned_cols=109 Identities=19% Similarity=0.275 Sum_probs=62.2
Q ss_pred CceeccchhHHh-hh--hhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-ccCH
Q 032243 1 MQWDTAGQERFR-TI--TSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK-VVSY 74 (144)
Q Consensus 1 qi~Dt~G~~~~~-~~--~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~ 74 (144)
++||.|||..|- +. ....++++-+++||+|+.+.. .+..+..........+ +++.+=|.+.|.|=.... .+..
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvN-p~in~EVfiHKvDGLsdd~kiet 156 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVN-PNINFEVFIHKVDGLSDDFKIET 156 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecC-CCceEEEEEEeccCCchhhhhhh
Confidence 589999996532 21 356678999999999987642 2222222222223333 467788889999954321 1111
Q ss_pred -HH----HHHHHHHcC-----CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 75 -ET----AKAFADEIG-----IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 75 -~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.. ...-....| +.++.+|.. ...|.+.|..++..+.
T Consensus 157 qrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 157 QRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLI 202 (347)
T ss_pred HHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHh
Confidence 01 111112223 245566655 4788888887776654
No 344
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.90 E-value=0.026 Score=43.44 Aligned_cols=89 Identities=9% Similarity=0.165 Sum_probs=54.8
Q ss_pred hhhhc-CCCEEEEEE-eCC----CHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcE
Q 032243 16 SSYYR-GAHGIIIVY-DVT----DQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPF 88 (144)
Q Consensus 16 ~~~~~-~~d~~i~v~-d~~----~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (144)
+..+. ++|..|+|. |.+ .+..+.+. ..++..+... ++|+++++||.|-..+. .......+.+.++.++
T Consensus 138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpv 212 (492)
T TIGR02836 138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPV 212 (492)
T ss_pred HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCce
Confidence 44455 899999998 764 11223333 3566666655 48999999999932221 2333445666778888
Q ss_pred EEeecCC--CCCHHHHHHHHHHH
Q 032243 89 METSAKD--STNVEQAFMAMAAS 109 (144)
Q Consensus 89 ~~~Sa~~--~~~i~~l~~~i~~~ 109 (144)
+.+|+.. ..+|..+++.++-.
T Consensus 213 l~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 213 LAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred EEEEHHHcCHHHHHHHHHHHHhc
Confidence 8888765 24555555544433
No 345
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=96.89 E-value=0.0013 Score=48.51 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=59.2
Q ss_pred HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc----EEEEEeCCCCCCCcccCHHHHHHHHHHcC
Q 032243 10 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN----KLLVGNKCDLTANKVVSYETAKAFADEIG 85 (144)
Q Consensus 10 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 85 (144)
-|....+. +..+|.++.|.|++.|.--......+.-+....-...| ++=|-||+|..+.... .+..
T Consensus 247 AF~ATLee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n- 316 (410)
T KOG0410|consen 247 AFQATLEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKN- 316 (410)
T ss_pred HHHHHHHH-HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccC-
Confidence 35544454 56799999999999987554444444444444322222 3556788886433221 1112
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 86 IPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 86 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
..+.+||.+|+|++++.+.+-..+..
T Consensus 317 -~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 317 -LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred -CccccccccCccHHHHHHHHHHHhhh
Confidence 25789999999999999988887754
No 346
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.76 E-value=0.02 Score=41.92 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=54.0
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------cCC--cEE
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-------IGI--PFM 89 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~--~~~ 89 (144)
.+-+|.+++|.-..-- ++++-+..-+.. +-=++|+||+|... ......++...... .+| +++
T Consensus 162 ~~~aDt~~~v~~pg~G---D~~Q~iK~GimE-----iaDi~vINKaD~~~-A~~a~r~l~~al~~~~~~~~~~~W~ppv~ 232 (323)
T COG1703 162 ANMADTFLVVMIPGAG---DDLQGIKAGIME-----IADIIVINKADRKG-AEKAARELRSALDLLREVWRENGWRPPVV 232 (323)
T ss_pred hhhcceEEEEecCCCC---cHHHHHHhhhhh-----hhheeeEeccChhh-HHHHHHHHHHHHHhhcccccccCCCCcee
Confidence 4457888877754322 233333333322 23488999999532 22112222222221 133 899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHhhccC
Q 032243 90 ETSAKDSTNVEQAFMAMAASIKDRMASQ 117 (144)
Q Consensus 90 ~~Sa~~~~~i~~l~~~i~~~~~~~~~~~ 117 (144)
.+||..|+|++++++.|.++......+.
T Consensus 233 ~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 233 TTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred EeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999987554443
No 347
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.64 E-value=0.019 Score=39.96 Aligned_cols=92 Identities=12% Similarity=0.219 Sum_probs=53.2
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHcCCcEE
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTANKVVS-------YETAKAFADEIGIPFM 89 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~ 89 (144)
..+.|+++||+...... -.+ ...+..+....+. -..++|++|..|...+..+. ......+.+..+-.++
T Consensus 81 ~~g~ha~llVi~~~r~t-~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFT-EED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-S-HHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcch-HHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 45789999999988332 111 2223333332221 24588889988875544321 1123445555666777
Q ss_pred EeecC------CCCCHHHHHHHHHHHHHH
Q 032243 90 ETSAK------DSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 90 ~~Sa~------~~~~i~~l~~~i~~~~~~ 112 (144)
.++.+ ....+.+|++.|-.++.+
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 77766 335677888888777764
No 348
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.47 E-value=0.01 Score=44.90 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=39.4
Q ss_pred hHHhhhhhhhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 9 ERFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
.-|..-.+..++.+|++|-|+|+.||.+-. ++..++.. ..++...|+|+||+||.+.
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~----~~gnKkLILVLNK~DLVPr 192 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ----AHGNKKLILVLNKIDLVPR 192 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh----ccCCceEEEEeehhccCCH
Confidence 346666677788999999999999986432 33333221 2234678999999999653
No 349
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.44 E-value=0.024 Score=42.95 Aligned_cols=105 Identities=14% Similarity=0.110 Sum_probs=50.0
Q ss_pred ceeccchhHHhhhhhhh-----hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC-------CCC
Q 032243 2 QWDTAGQERFRTITSSY-----YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-------TAN 69 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl-------~~~ 69 (144)
+||.||.-........| +..-|.+|++.+-. |..-+.++..-.... +.|+++|-||.|. ..+
T Consensus 90 lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p 163 (376)
T PF05049_consen 90 LWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKP 163 (376)
T ss_dssp EEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-S
T ss_pred EEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCC
Confidence 79999963322222333 45679888877632 433333333333333 5799999999995 122
Q ss_pred cccCHHHHHHH----HH----HcCC---cEEEeecCCC--CCHHHHHHHHHHHHHH
Q 032243 70 KVVSYETAKAF----AD----EIGI---PFMETSAKDS--TNVEQAFMAMAASIKD 112 (144)
Q Consensus 70 ~~~~~~~~~~~----~~----~~~~---~~~~~Sa~~~--~~i~~l~~~i~~~~~~ 112 (144)
+..+.++..+. +. ..++ ++|-+|..+- .+...+.+.+.+.+..
T Consensus 164 ~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 164 RTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp TT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred cccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 22322222222 21 1233 6889998764 5677788877776654
No 350
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.29 E-value=0.036 Score=42.25 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=53.3
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCC
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS 96 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 96 (144)
..+..+|++|-|+|+.|+..-. . ..+........+....|+|+||+||.+- -+...=+.-+.+.+.---|..|..+.
T Consensus 209 KViDSSDVvvqVlDARDPmGTr-c-~~ve~ylkke~phKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTiAfHAsi~ns 285 (572)
T KOG2423|consen 209 KVIDSSDVVVQVLDARDPMGTR-C-KHVEEYLKKEKPHKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTIAFHASINNS 285 (572)
T ss_pred HhhcccceeEEeeeccCCcccc-c-HHHHHHHhhcCCcceeEEEeeccccccH-HHHHHHHHHHhhhCcceeeehhhcCc
Confidence 3357899999999999874221 1 1222233333345788999999999542 22222222233333223456677777
Q ss_pred CCHHHHHHHHHHHHH
Q 032243 97 TNVEQAFMAMAASIK 111 (144)
Q Consensus 97 ~~i~~l~~~i~~~~~ 111 (144)
.|-..+++.+....+
T Consensus 286 fGKgalI~llRQf~k 300 (572)
T KOG2423|consen 286 FGKGALIQLLRQFAK 300 (572)
T ss_pred cchhHHHHHHHHHHh
Confidence 787777775554443
No 351
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.047 Score=44.08 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=55.8
Q ss_pred ceeccchh---HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 2 QWDTAGQE---RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 2 i~Dt~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
+.|.||.. ........+..++|++|||..+.+.-+..+ ...+... ...+..++++-||.|....++-..+.+.
T Consensus 210 liDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~v---s~~KpniFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 210 LIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKV---SEEKPNIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred eccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHh---hccCCcEEEEechhhhhcccHHHHHHHH
Confidence 56888853 455566777889999999998876544333 2233333 3235678888999998654443344444
Q ss_pred HHHHHcCC--------cEEEeecC
Q 032243 79 AFADEIGI--------PFMETSAK 94 (144)
Q Consensus 79 ~~~~~~~~--------~~~~~Sa~ 94 (144)
.....++. .++.|||+
T Consensus 286 ~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 286 KQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHhcCcccHhhhcCeeEEEecc
Confidence 44444431 47888855
No 352
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.21 E-value=0.018 Score=41.26 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=38.6
Q ss_pred CceeccchhHHh----------hhhhhhhc--CCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCC--CCcEEEEEeCCC
Q 032243 1 MQWDTAGQERFR----------TITSSYYR--GAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASD--NVNKLLVGNKCD 65 (144)
Q Consensus 1 qi~Dt~G~~~~~----------~~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~D 65 (144)
.+|||||..... .....|+. ..|++++|..++... ++.+ ...+..+...... -.++++|.||.|
T Consensus 82 ~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d 160 (249)
T cd01853 82 NIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAA 160 (249)
T ss_pred EEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCc
Confidence 379999965331 01233443 578888887665431 2221 2333333332221 257999999999
Q ss_pred CCCCc
Q 032243 66 LTANK 70 (144)
Q Consensus 66 l~~~~ 70 (144)
..++.
T Consensus 161 ~~~p~ 165 (249)
T cd01853 161 SSPPD 165 (249)
T ss_pred cCCCC
Confidence 86443
No 353
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.15 E-value=0.01 Score=42.52 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=48.0
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----C--CcEEEe
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-----G--IPFMET 91 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~--~~~~~~ 91 (144)
..-+|.+++|+...--+....++ .-+.. +.=++|+||.|... ......+........ + .+++.+
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~K---aGimE-----iaDi~vVNKaD~~g-A~~~~~~l~~~l~l~~~~~~~W~ppV~~t 210 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIK---AGIME-----IADIFVVNKADRPG-ADRTVRDLRSMLHLLREREDGWRPPVLKT 210 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB----TTHHH-----H-SEEEEE--SHHH-HHHHHHHHHHHHHHCSTSCTSB--EEEEE
T ss_pred HHhcCeEEEEecCCCccHHHHHh---hhhhh-----hccEEEEeCCChHH-HHHHHHHHHHHHhhccccccCCCCCEEEE
Confidence 44578888888764332222211 11111 23488999999522 111122333333221 1 389999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 032243 92 SAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 92 Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
||.++.|++++++.|.++...
T Consensus 211 sA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 211 SALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887643
No 354
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.04 E-value=0.069 Score=37.91 Aligned_cols=59 Identities=27% Similarity=0.293 Sum_probs=37.6
Q ss_pred ceec-cchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 2 QWDT-AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
+.|| +|.+.|. +...+++|.+|.|+|.+-+ ++...... ..+..... -.++++|+||.|-
T Consensus 138 ivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri-~~L~~elg-~k~i~~V~NKv~e 197 (255)
T COG3640 138 IVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERI-KELAEELG-IKRIFVVLNKVDE 197 (255)
T ss_pred EEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHHhC-CceEEEEEeeccc
Confidence 3455 3777666 5677899999999998643 34433332 22222221 2689999999995
No 355
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=96.03 E-value=0.12 Score=39.14 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=27.2
Q ss_pred CcEEEEEeCCCCC-CCcccCHHHHHHHHHHcCCcEEEeecCC
Q 032243 55 VNKLLVGNKCDLT-ANKVVSYETAKAFADEIGIPFMETSAKD 95 (144)
Q Consensus 55 ~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 95 (144)
.|+++++|+.|.. .......+.+..++...+.+++++||.-
T Consensus 200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 241 (364)
T PRK09601 200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKI 241 (364)
T ss_pred CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 8999999999851 1111123455556656678899999753
No 356
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=0.0098 Score=48.37 Aligned_cols=58 Identities=26% Similarity=0.329 Sum_probs=42.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
+++|+||+-.|.+.......-+|++++++|..+- .++.-+++ .+.. ...+++|+||+|
T Consensus 75 nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq----~~~~---~~~~~lvinkid 135 (887)
T KOG0467|consen 75 NLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQ----AWIE---GLKPILVINKID 135 (887)
T ss_pred EEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHH----HHHc---cCceEEEEehhh
Confidence 4799999999999888888889999999998652 23222222 1111 246789999999
No 357
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.98 E-value=0.068 Score=38.78 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=45.4
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 100 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 100 (144)
..|..++|+|.+.. .+.+.. ...+.... .+.-+|+||.|.... .-.+..+....+.|+..++ +|++++
T Consensus 190 ~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~---~~~g~IlTKlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~ 257 (272)
T TIGR00064 190 APDEVLLVLDATTG--QNALEQ-AKVFNEAV---GLTGIILTKLDGTAK----GGIILSIAYELKLPIKFIG--VGEKID 257 (272)
T ss_pred CCceEEEEEECCCC--HHHHHH-HHHHHhhC---CCCEEEEEccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChH
Confidence 38999999998742 233322 22222222 356888999997432 2234455556789999988 778887
Q ss_pred HHHH
Q 032243 101 QAFM 104 (144)
Q Consensus 101 ~l~~ 104 (144)
++..
T Consensus 258 dl~~ 261 (272)
T TIGR00064 258 DLAP 261 (272)
T ss_pred hCcc
Confidence 7654
No 358
>PHA02518 ParA-like protein; Provisional
Probab=95.74 E-value=0.1 Score=35.80 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=36.7
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVN-KLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 66 (144)
|+||||.. .......+..+|.+|+++..+..+ ....+..++..+..... ..+ ..++.|+.+.
T Consensus 81 iiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~n~~~~ 145 (211)
T PHA02518 81 VVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTD-GLPKFAFIISRAIK 145 (211)
T ss_pred EEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCC-CCceEEEEEeccCC
Confidence 78999863 345567788999999999876432 22233333333322222 233 4566777653
No 359
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.71 E-value=0.084 Score=38.37 Aligned_cols=42 Identities=24% Similarity=0.136 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCCC-CCcccCHHHHHHHHHHcCCcEEEeecCCC
Q 032243 55 VNKLLVGNKCDLT-ANKVVSYETAKAFADEIGIPFMETSAKDS 96 (144)
Q Consensus 55 ~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 96 (144)
.|+++++|+.|.. .............+...+.+++++||.-.
T Consensus 196 KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~i~~sa~~E 238 (274)
T cd01900 196 KPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKIE 238 (274)
T ss_pred CCceeecccCHHHhccccHHHHHHHHHHhcCCCeEEEeeHHHH
Confidence 7999999998831 11111122333444455778999998643
No 360
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=95.63 E-value=0.012 Score=42.61 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=56.9
Q ss_pred ceeccc----------hhHHhhhhhhhhcC---CCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 2 QWDTAG----------QERFRTITSSYYRG---AHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
+.|.|| -..+..+...|+-+ .--+.+++|.+.+- .-.....|+... ++|+.+|+||+|.
T Consensus 187 ~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~------~VP~t~vfTK~DK 260 (320)
T KOG2486|consen 187 EVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN------NVPMTSVFTKCDK 260 (320)
T ss_pred EEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc------CCCeEEeeehhhh
Confidence 467777 24466666777632 34455566665431 112222333222 6999999999997
Q ss_pred CCCc------cc-CHHH-HHHH---HHHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 67 TANK------VV-SYET-AKAF---ADEIGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 67 ~~~~------~~-~~~~-~~~~---~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
.... .. +... ...+ ......||+.+|+.++.|++.++-.|..
T Consensus 261 ~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 261 QKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 4211 11 1111 1111 1122358899999999999998766554
No 361
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.62 E-value=0.077 Score=40.33 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=55.9
Q ss_pred ceeccchhHHhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHH---
Q 032243 2 QWDTAGQERFRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET--- 76 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~--- 76 (144)
|+|.+|+++|....-.-+ +-.|...+++-.+-- -..-.++-+...... .+|+++|.+|+|+-+.+.+ .+.
T Consensus 223 FIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALaL---~VPVfvVVTKIDMCPANiL-qEtmKl 297 (641)
T KOG0463|consen 223 FIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALAL---HVPVFVVVTKIDMCPANIL-QETMKL 297 (641)
T ss_pred EEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhhh---cCcEEEEEEeeccCcHHHH-HHHHHH
Confidence 689999999877432222 235777777765421 111111111111121 5899999999998544332 222
Q ss_pred HHHHHHHcC--------------------------CcEEEeecCCCCCHHHHHHH
Q 032243 77 AKAFADEIG--------------------------IPFMETSAKDSTNVEQAFMA 105 (144)
Q Consensus 77 ~~~~~~~~~--------------------------~~~~~~Sa~~~~~i~~l~~~ 105 (144)
+.++.+..+ +|+|.+|-.+|.|+.-+...
T Consensus 298 l~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 298 LTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 222222211 36899999999999765543
No 362
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.17 E-value=0.13 Score=44.56 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=34.0
Q ss_pred CCCEEEEEEeCCCH-----HHH----HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 21 GAHGIIIVYDVTDQ-----ESF----NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 21 ~~d~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
..+++|+++|+.+- ... ..+..-+..+.....-..|+.|++||+|+..+
T Consensus 201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 48999999997542 111 23344555555555557999999999999765
No 363
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.15 E-value=0.2 Score=36.26 Aligned_cols=63 Identities=22% Similarity=0.403 Sum_probs=46.0
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM 89 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (144)
..+.++|.+|+|-..+- ..+.+++..+..+.+. ++|..+|+||.++.. . +...+++..+++++
T Consensus 181 ~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f---~ip~~iViNr~~~g~-----s-~ie~~~~e~gi~il 243 (284)
T COG1149 181 ASLKGADLAILVTEPTP-FGLHDLKRALELVEHF---GIPTGIVINRYNLGD-----S-EIEEYCEEEGIPIL 243 (284)
T ss_pred HhhccCCEEEEEecCCc-cchhHHHHHHHHHHHh---CCceEEEEecCCCCc-----h-HHHHHHHHcCCCee
Confidence 44789999999988763 3566777666666555 499999999996532 2 66778888877654
No 364
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.15 E-value=0.17 Score=37.56 Aligned_cols=73 Identities=23% Similarity=0.195 Sum_probs=45.8
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 100 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 100 (144)
..+..++|+|++.. .+.+... ..+... -.+.-+|+||.|.... .-.+.......++|+..++ +|++++
T Consensus 232 ~p~~~~LVl~a~~g--~~~~~~a-~~f~~~---~~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~ 299 (318)
T PRK10416 232 APHEVLLVLDATTG--QNALSQA-KAFHEA---VGLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGID 299 (318)
T ss_pred CCceEEEEEECCCC--hHHHHHH-HHHHhh---CCCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChh
Confidence 46889999998843 2333321 222211 1355789999995322 2234455667799999999 788888
Q ss_pred HHHHH
Q 032243 101 QAFMA 105 (144)
Q Consensus 101 ~l~~~ 105 (144)
++...
T Consensus 300 Dl~~~ 304 (318)
T PRK10416 300 DLQPF 304 (318)
T ss_pred hCccC
Confidence 77543
No 365
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.97 E-value=0.19 Score=34.61 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=50.1
Q ss_pred ceeccchhHHh----hhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERFR----TITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|..... ..+..++ ...+-+++|+|++... +.+.. ...+.... .+-=+|+||.|.... .-
T Consensus 88 lIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~-~~~~~~~~---~~~~lIlTKlDet~~----~G 157 (196)
T PF00448_consen 88 LIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQ-ALAFYEAF---GIDGLILTKLDETAR----LG 157 (196)
T ss_dssp EEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHH-HHHHHHHS---STCEEEEESTTSSST----TH
T ss_pred EEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHH-HHHHhhcc---cCceEEEEeecCCCC----cc
Confidence 68999953221 1122222 1578899999987643 33332 22222222 234677999996322 33
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCHHH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNVEQ 101 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~ 101 (144)
.+..+....+.|+-.++ +|+++++
T Consensus 158 ~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 158 ALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp HHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred cceeHHHHhCCCeEEEE--CCCChhc
Confidence 45667778888888887 5555543
No 366
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.96 E-value=0.14 Score=33.05 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=40.9
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
++|+++.. .......+..+|.++++++.+. .++..+...+..+.... ...++.+++|+.+-
T Consensus 49 IiD~p~~~--~~~~~~~l~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 49 IIDTGAGI--SDNVLDFFLAADEVIVVTTPEP-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred EEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 68998753 3334567889999999998864 44555555555554333 24577899999974
No 367
>PRK14974 cell division protein FtsY; Provisional
Probab=94.93 E-value=0.42 Score=35.85 Aligned_cols=92 Identities=17% Similarity=0.086 Sum_probs=54.5
Q ss_pred ceeccchhHH----hhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERF----RTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|.... ..-++.+. -+.|.+++|+|+.... +.......+.... ..--+|+||.|....- =
T Consensus 227 LIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~---~~~giIlTKlD~~~~~----G 296 (336)
T PRK14974 227 LIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV---GIDGVILTKVDADAKG----G 296 (336)
T ss_pred EEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC---CCCEEEEeeecCCCCc----c
Confidence 6899997431 11122222 2578999999986432 2222222232211 3457889999974322 2
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCHHHHHHH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNVEQAFMA 105 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 105 (144)
.+..++...+.|+..++ +|++++++...
T Consensus 297 ~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 297 AALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred HHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 33445556789999988 78999877653
No 368
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=94.86 E-value=0.36 Score=34.92 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=38.2
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 55 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
++++.|.||+|. ++.++..++++..+- +.+|+.-+-|++.+++.|-+.+.
T Consensus 239 ~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 239 IKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence 678888899985 346677777765543 56778888999999998888875
No 369
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=94.75 E-value=0.26 Score=35.61 Aligned_cols=93 Identities=20% Similarity=0.342 Sum_probs=49.2
Q ss_pred CCCEEEEEEeCCC-----HH--HHH----HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH--HHHHHHcCCc
Q 032243 21 GAHGIIIVYDVTD-----QE--SFN----NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA--KAFADEIGIP 87 (144)
Q Consensus 21 ~~d~~i~v~d~~~-----~~--s~~----~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~ 87 (144)
..+|+|+++|+.+ .. .+. .+..-+..+.....-..|+.|++||+|+.++-..-.... ....+.+|+.
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t 104 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFT 104 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccc
Confidence 3699999999643 11 111 223334444444555799999999999976632111110 1112233443
Q ss_pred EEEeecCCCCC---HHHHHHHHHHHHHHh
Q 032243 88 FMETSAKDSTN---VEQAFMAMAASIKDR 113 (144)
Q Consensus 88 ~~~~Sa~~~~~---i~~l~~~i~~~~~~~ 113 (144)
+-.-....+.. +.+.|+.+...+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 133 (266)
T PF14331_consen 105 FPYDEDADGDAWAWFDEEFDELVARLNAR 133 (266)
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 22222223333 667777766666544
No 370
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.67 E-value=0.41 Score=33.70 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=39.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
|+|||+. ........+..+|.+++++..+ ..++..+...+..+........+..++.|+.|.
T Consensus 119 iiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~ 180 (246)
T TIGR03371 119 LIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDP 180 (246)
T ss_pred EEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence 6799984 3344567778899999999875 345555553222222211223457789999985
No 371
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.62 E-value=0.22 Score=30.70 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=39.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNK 63 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK 63 (144)
+.|||+.... .....+..+|.++++++.+ ..++..+..++..+...... ...+.+|+|+
T Consensus 47 IiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 47 VVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred EEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6899876432 2345678899999999765 44566666666666554432 3466777775
No 372
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.49 E-value=0.27 Score=38.07 Aligned_cols=81 Identities=15% Similarity=0.048 Sum_probs=44.5
Q ss_pred ceeccchhHHhh-h---hhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERFRT-I---TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|...... + ...+ ..+.|.++||+|++--. + .......+... -.+.-+|+||.|-.... =
T Consensus 187 iIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq--~-a~~~a~~F~~~---~~~~g~IlTKlD~~arg----G 256 (429)
T TIGR01425 187 IVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ--A-AEAQAKAFKDS---VDVGSVIITKLDGHAKG----G 256 (429)
T ss_pred EEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh--h-HHHHHHHHHhc---cCCcEEEEECccCCCCc----c
Confidence 789999643221 1 1111 23568899999976321 1 11222333222 24678899999963221 1
Q ss_pred HHHHHHHHcCCcEEEee
Q 032243 76 TAKAFADEIGIPFMETS 92 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~S 92 (144)
.+.......+.|+..++
T Consensus 257 ~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 257 GALSAVAATKSPIIFIG 273 (429)
T ss_pred HHhhhHHHHCCCeEEEc
Confidence 23445556677776666
No 373
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=94.47 E-value=0.56 Score=31.13 Aligned_cols=81 Identities=9% Similarity=0.051 Sum_probs=48.4
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
|+||++..... ....+..+|.++++++.+. .++..+..++..+.... .....+++|+.+.... ...+....+.
T Consensus 67 iiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~~~~ 139 (179)
T cd02036 67 LIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVEDIE 139 (179)
T ss_pred EEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHHHHH
Confidence 68998764332 3445678999999998764 34555555555554422 2456788999986322 1122234455
Q ss_pred HHcCCcEE
Q 032243 82 DEIGIPFM 89 (144)
Q Consensus 82 ~~~~~~~~ 89 (144)
+.++.+++
T Consensus 140 ~~~~~~v~ 147 (179)
T cd02036 140 EILGVPLL 147 (179)
T ss_pred HHhCCCEE
Confidence 55666654
No 374
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=94.46 E-value=1.3 Score=35.56 Aligned_cols=98 Identities=12% Similarity=0.196 Sum_probs=58.1
Q ss_pred hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--
Q 032243 9 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-- 85 (144)
Q Consensus 9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 85 (144)
+..-+|..+|+.+.+++|+++--.+ .+.-......+ ....+.....|+|++|.|+...+..++..+.++.+..-
T Consensus 436 d~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFP 512 (980)
T KOG0447|consen 436 ETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFP 512 (980)
T ss_pred HHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccc
Confidence 3456678999999999999984222 11111222223 33344567889999999997665666666666654321
Q ss_pred ---CcEEEeecCCC---CCHHHHHHHHHHH
Q 032243 86 ---IPFMETSAKDS---TNVEQAFMAMAAS 109 (144)
Q Consensus 86 ---~~~~~~Sa~~~---~~i~~l~~~i~~~ 109 (144)
+.||.+-.-.| +.|+++.+.=.+.
T Consensus 513 MKALGYfaVVTGrGnssdSIdaIR~YEE~F 542 (980)
T KOG0447|consen 513 MKALGYFAVVTGKGNSSESIEAIREYEEEF 542 (980)
T ss_pred hhhcceeEEEecCCCcchhHHHHHHHHHHH
Confidence 24555543333 4566665543333
No 375
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.37 E-value=0.33 Score=36.22 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=52.4
Q ss_pred ceeccchhHHhhhhhhhhc--------CCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 2 QWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
+++|.|.....+.+..++. ..|+++-|+|+..-..... +.......... -=+|++||.|+.+...
T Consensus 89 vIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~~~~- 162 (323)
T COG0523 89 VIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVDAEE- 162 (323)
T ss_pred EEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCCHHH-
Confidence 3456665444343333332 3688999999876433222 22322222222 2388999999976543
Q ss_pred CHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHH
Q 032243 73 SYETAKAFADEIG--IPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 73 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~ 104 (144)
........+.++ .+++.++. .+.+..+++.
T Consensus 163 -l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 163 -LEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred -HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 334444555544 58888887 3445444443
No 376
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=94.19 E-value=0.044 Score=41.82 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=61.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCcc------
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDLTANKV------ 71 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~Dl~~~~~------ 71 (144)
+.|++|+..|-+.+-.-...+|..++|+++.- +..|+.--+-- ..+......-...|+++||.|-..-+-
T Consensus 161 iLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~ 240 (501)
T KOG0459|consen 161 ILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYE 240 (501)
T ss_pred eeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHH
Confidence 57899998888766555678999999998732 12232210100 111111112356788999999743211
Q ss_pred cCHHHHHHHHHHcC------CcEEEeecCCCCCHHHHHH
Q 032243 72 VSYETAKAFADEIG------IPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 72 ~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 104 (144)
-.......+....+ ..++++|..+|.++++...
T Consensus 241 E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 241 ECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred HHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11223334444443 3689999999999987654
No 377
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=0.072 Score=38.28 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=36.9
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
.+..-++++|||++....+..++.|+.+-....- -..+.|+||.|-.++
T Consensus 76 a~pl~a~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvph 124 (418)
T KOG4273|consen 76 AEPLQAFVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPH 124 (418)
T ss_pred ccceeeEEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccc
Confidence 3456789999999999999999999887644331 234677999997543
No 378
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=93.99 E-value=0.2 Score=33.16 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=32.3
Q ss_pred ceeccchhHHhhhhhh--------hhcCCCEEEEEEeCCCHHHHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSS--------YYRGAHGIIIVYDVTDQESFN-NVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
|.||+|-.+-...... .....|.+++++|......+. ....+...+. . -=++|+||+|+
T Consensus 91 ~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~-~-----ad~ivlnk~dl 158 (158)
T cd03112 91 VIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA-F-----ADRILLNKTDL 158 (158)
T ss_pred EEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH-H-----CCEEEEecccC
Confidence 5788886433332222 123589999999976543222 1111222221 1 23678999996
No 379
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=93.98 E-value=0.81 Score=36.47 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=42.9
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEee--cCCCCCHHHHHHHHHHHHH
Q 032243 54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS--AKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~i~~~~~ 111 (144)
.+|++|++||+|...+.+ .+.+.+++++.++++..+. ++-|.|--++-+.+.+.+.
T Consensus 372 GvPvVVAINKFd~DTe~E--i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 372 GVPVVVAINKFVTDTDAE--IAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred CCCEEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 699999999999744322 5667889999999876444 4556788888888888775
No 380
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.02 Score=43.92 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=46.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+++||||+-.|+--.+.+++-.|+++.|||.+---.-..+.. +++....++|-..++||+|..
T Consensus 105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltv----wrqadk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV----WRQADKFKIPAHCFINKMDKL 167 (753)
T ss_pred eeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeee----ehhccccCCchhhhhhhhhhh
Confidence 478999999999888999999999999999864211111212 233334478999999999974
No 381
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.67 E-value=0.5 Score=36.72 Aligned_cols=82 Identities=20% Similarity=0.106 Sum_probs=45.9
Q ss_pred ceeccchhHHhhh----hhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERFRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|....... +..+ +..+|.+++|+|++... + .......+.... ...-+|+||.|-... .=
T Consensus 180 IIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~-av~~a~~F~~~l---~i~gvIlTKlD~~a~----~G 249 (437)
T PRK00771 180 IVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--Q-AKNQAKAFHEAV---GIGGIIITKLDGTAK----GG 249 (437)
T ss_pred EEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--H-HHHHHHHHHhcC---CCCEEEEecccCCCc----cc
Confidence 6899997543211 1111 33689999999986532 2 212222222211 234678999996322 12
Q ss_pred HHHHHHHHcCCcEEEeec
Q 032243 76 TAKAFADEIGIPFMETSA 93 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa 93 (144)
.+..+....+.|+..++.
T Consensus 250 ~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 250 GALSAVAETGAPIKFIGT 267 (437)
T ss_pred HHHHHHHHHCcCEEEEec
Confidence 345566677888777763
No 382
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=93.14 E-value=0.86 Score=34.49 Aligned_cols=63 Identities=24% Similarity=0.352 Sum_probs=50.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
++|.| .-+.+..+.++..+|-+++|++.+- .+....++++..++.......+..+++||.+..
T Consensus 222 V~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 222 VVDLP--NIWTDWTRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELKRLRPNDPKPILVLNRVGVP 284 (366)
T ss_pred EEcCC--CccchHHHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHHHhCCCCCCceEEeeecCCC
Confidence 56766 3345556888999999999999764 467777888888888877778889999999864
No 383
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.11 E-value=1 Score=34.98 Aligned_cols=82 Identities=17% Similarity=0.091 Sum_probs=46.3
Q ss_pred ceeccchhHHhh----hhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERFRT----ITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|...... ....+ .-..|.++||+|.... .+...+...+.... ...=+|.||.|-.... -
T Consensus 187 IIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i~giIlTKlD~~~~~----G 256 (428)
T TIGR00959 187 IVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GLTGVVLTKLDGDARG----G 256 (428)
T ss_pred EEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc----c
Confidence 689999532211 11111 2357899999998643 23333333333222 2346779999953221 1
Q ss_pred HHHHHHHHcCCcEEEeec
Q 032243 76 TAKAFADEIGIPFMETSA 93 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa 93 (144)
.+..+....++|+..++.
T Consensus 257 ~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 257 AALSVRSVTGKPIKFIGV 274 (428)
T ss_pred HHHHHHHHHCcCEEEEeC
Confidence 256677778888777764
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.11 E-value=1.6 Score=34.89 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=49.3
Q ss_pred ceeccchhHHhhh-------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243 2 QWDTAGQERFRTI-------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY 74 (144)
Q Consensus 2 i~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 74 (144)
|+||+|....... +... .....++|++.+. ++.++...+..+... .+.-+|+||.|... ..
T Consensus 433 LIDTaG~s~~D~~l~eeL~~L~aa--~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~----~l 500 (559)
T PRK12727 433 LIDTAGMGQRDRALAAQLNWLRAA--RQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG----RF 500 (559)
T ss_pred EecCCCcchhhHHHHHHHHHHHHh--hcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc----ch
Confidence 7899996432211 1111 1245677777664 344444444444332 46789999999632 23
Q ss_pred HHHHHHHHHcCCcEEEeecCCCCCH
Q 032243 75 ETAKAFADEIGIPFMETSAKDSTNV 99 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~~Sa~~~~~i 99 (144)
-.+..+....++++..++ +|..+
T Consensus 501 G~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 501 GSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hHHHHHHHHhCCCEEEEe--CCCCc
Confidence 455667777888888887 55555
No 385
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=92.99 E-value=1 Score=37.04 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=38.7
Q ss_pred ceeccchhHH----------hhhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERF----------RTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~----------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~ 67 (144)
++||||.... ......++. ..|++|+|+.++.......-..++..+...... -..+||++|..|..
T Consensus 170 VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 170 VIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred EEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 7899996532 111233444 489999999876432211112344444333322 24679999999986
Q ss_pred C
Q 032243 68 A 68 (144)
Q Consensus 68 ~ 68 (144)
+
T Consensus 250 p 250 (763)
T TIGR00993 250 P 250 (763)
T ss_pred C
Confidence 5
No 386
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.78 E-value=0.34 Score=35.14 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=21.7
Q ss_pred CceeccchhHHhhhhhhhhc----CCCEEEEEEeCCCHHH
Q 032243 1 MQWDTAGQERFRTITSSYYR----GAHGIIIVYDVTDQES 36 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~----~~d~~i~v~d~~~~~s 36 (144)
++|+.||...-..+..-=+. ..=.+|+|+|++.++.
T Consensus 95 N~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~ 134 (363)
T KOG3929|consen 95 NFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPND 134 (363)
T ss_pred HHHHhcCCccHHHHhcCcccccchhhhhheeeeecCChHH
Confidence 47888887654443221111 1346788999998763
No 387
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.55 E-value=1.7 Score=28.91 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=42.6
Q ss_pred ceeccchhH----Hhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQER----FRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~----~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|.||+|... .......+. ...+.+++|+|..... + .......+.... . ..-+|.||.|.... .-
T Consensus 87 iiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~-~~~~~~~~~~~~--~-~~~viltk~D~~~~----~g 156 (173)
T cd03115 87 IVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--D-AVNQAKAFNEAL--G-ITGVILTKLDGDAR----GG 156 (173)
T ss_pred EEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--H-HHHHHHHHHhhC--C-CCEEEEECCcCCCC----cc
Confidence 679998632 222222222 3489999999986432 2 222333333222 1 35677899997432 22
Q ss_pred HHHHHHHHcCCcEEE
Q 032243 76 TAKAFADEIGIPFME 90 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~ 90 (144)
.....+...++|+..
T Consensus 157 ~~~~~~~~~~~p~~~ 171 (173)
T cd03115 157 AALSIRAVTGKPIKF 171 (173)
T ss_pred hhhhhHHHHCcCeEe
Confidence 233366666776544
No 388
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=91.95 E-value=1.1 Score=33.27 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=46.6
Q ss_pred hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecC
Q 032243 15 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK 94 (144)
Q Consensus 15 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 94 (144)
....+...|.+|=|-|+.-|-|-.. .. +..... ..|-++|.||.||.+..+. ..-++.+.......++..++.
T Consensus 40 i~~~l~~~D~iiEvrDaRiPLssrn--~~---~~~~~~-~k~riiVlNK~DLad~~~~-k~~iq~~~~~~~~~~~~~~c~ 112 (335)
T KOG2485|consen 40 IQNRLPLVDCIIEVRDARIPLSSRN--EL---FQDFLP-PKPRIIVLNKMDLADPKEQ-KKIIQYLEWQNLESYIKLDCN 112 (335)
T ss_pred HHhhcccccEEEEeeccccCCcccc--HH---HHHhcC-CCceEEEEecccccCchhh-hHHHHHHHhhcccchhhhhhh
Confidence 4455677999999999765532221 11 112222 4788999999999764332 333333333333344444443
Q ss_pred CCCC--HHHHHHHHHHH
Q 032243 95 DSTN--VEQAFMAMAAS 109 (144)
Q Consensus 95 ~~~~--i~~l~~~i~~~ 109 (144)
...+ +..++..+...
T Consensus 113 ~~~~~~v~~l~~il~~~ 129 (335)
T KOG2485|consen 113 KDCNKQVSPLLKILTIL 129 (335)
T ss_pred hhhhhccccHHHHHHHH
Confidence 3333 44554443333
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.95 E-value=0.52 Score=30.93 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=32.4
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
|.||+|..... ..++..+|.++++...+--+.+--+ ...+.. .-=++++||+|
T Consensus 96 iIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 96 IVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAI---KAGIME-----IADIVVVNKAD 148 (148)
T ss_pred EEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHh---hhhHhh-----hcCEEEEeCCC
Confidence 68998865322 3578889999999987633322211 111111 23488899997
No 390
>PRK10867 signal recognition particle protein; Provisional
Probab=91.83 E-value=2.2 Score=33.20 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=44.7
Q ss_pred ceeccchhHHhh----hhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERFRT----ITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|...... ....+ +-..+.+++|+|.... .+.......+.... ...-+|+||.|-.... =
T Consensus 188 IIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~~rg----G 257 (433)
T PRK10867 188 IVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGDARG----G 257 (433)
T ss_pred EEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc----c
Confidence 689999542211 11111 1256788999997642 22223333333221 2346778999953221 1
Q ss_pred HHHHHHHHcCCcEEEeec
Q 032243 76 TAKAFADEIGIPFMETSA 93 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa 93 (144)
.+.......+.|+..++.
T Consensus 258 ~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 258 AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred HHHHHHHHHCcCEEEEeC
Confidence 255666777888777764
No 391
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=91.73 E-value=0.32 Score=32.77 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=43.7
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
|.|||+..... ....+..+|.+|++++.+. .+...+..++..+.........+.+|.|+.+..
T Consensus 99 iiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 99 IIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp EEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred eecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 67888754333 4566789999999999865 446667777766665542213568889999864
No 392
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.89 E-value=2.2 Score=37.24 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=33.2
Q ss_pred cCCCEEEEEEeCCCH----HHH-----HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 20 RGAHGIIIVYDVTDQ----ESF-----NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 20 ~~~d~~i~v~d~~~~----~s~-----~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
+..++||+.+|+.+- ... ..+..=+.++.....-..|++|++||.|+..+
T Consensus 213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 347999999997541 111 12233345555555557999999999999765
No 393
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=90.79 E-value=2.6 Score=29.75 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=39.5
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
|+|+|+.... .....+..+|.+++++..+ ..++..+...+..+.... ..++.+++|+.+.
T Consensus 116 iiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 116 IIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP 175 (261)
T ss_pred EEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence 6899875422 2345567899999999875 445666666555554433 2367788999874
No 394
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.70 E-value=1.7 Score=33.41 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=48.6
Q ss_pred ceeccchhHH----hhhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERF----RTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~----~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|.... ...+..+.. ..+.+++|++... ...++...+..+ . .-.+--+|+||.|-... .=
T Consensus 290 LIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f---~-~l~i~glI~TKLDET~~----~G 359 (407)
T PRK12726 290 LIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL---A-EIPIDGFIITKMDETTR----IG 359 (407)
T ss_pred EEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc---C-cCCCCEEEEEcccCCCC----cc
Confidence 6899997322 222222332 3467777877642 223333333332 2 12345788999996322 23
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCHH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNVE 100 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i~ 100 (144)
.+..+....++|+..++ +|+++.
T Consensus 360 ~~Lsv~~~tglPIsylt--~GQ~Vp 382 (407)
T PRK12726 360 DLYTVMQETNLPVLYMT--DGQNIT 382 (407)
T ss_pred HHHHHHHHHCCCEEEEe--cCCCCC
Confidence 45567778888888887 445544
No 395
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.37 E-value=3.8 Score=31.84 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=52.1
Q ss_pred ceeccchhHHh----hhhhhhhc---CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243 2 QWDTAGQERFR----TITSSYYR---GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY 74 (144)
Q Consensus 2 i~Dt~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 74 (144)
|+||+|..... .....++. .-+-+.+|++.+-. ..++...+..+... .+--+|+||.|-... .
T Consensus 304 lIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~~~~vI~TKlDet~~----~ 373 (424)
T PRK05703 304 LIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----PLDGLIFTKLDETSS----L 373 (424)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----CCCEEEEeccccccc----c
Confidence 68999964322 22333333 33567788887643 23344434444221 233688999996322 3
Q ss_pred HHHHHHHHHcCCcEEEeecCCCCCH-HHHH
Q 032243 75 ETAKAFADEIGIPFMETSAKDSTNV-EQAF 103 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~ 103 (144)
-.+..+....++|+..++ +|.++ +++.
T Consensus 374 G~i~~~~~~~~lPv~yit--~Gq~VpdDl~ 401 (424)
T PRK05703 374 GSILSLLIESGLPISYLT--NGQRVPDDIK 401 (424)
T ss_pred cHHHHHHHHHCCCEEEEe--CCCCChhhhh
Confidence 356677888899988888 55664 4443
No 396
>CHL00175 minD septum-site determining protein; Validated
Probab=89.92 E-value=3.1 Score=30.05 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=38.6
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
|+|||+... ......+..+|.+++|++.+ ..++..+..++..+.... .....+++|+.+.
T Consensus 131 IiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~--~~~~~lvvN~~~~ 190 (281)
T CHL00175 131 LIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG--IYNVKLLVNRVRP 190 (281)
T ss_pred EEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC--CCceEEEEeccCh
Confidence 689987642 23345567799999998765 455666666555555433 2345678899874
No 397
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=89.68 E-value=0.3 Score=38.66 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=41.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
+++|.||+-.|.+-....++=.|+++.|+|.-+-- .-+.+ + ++.....+.-+++.||.|-
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETV---L---rQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV---L---RQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHH---H---HHHHHhhccceEEeehhhH
Confidence 47899999999998888889999999999975421 11111 1 1111113455788999994
No 398
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.26 E-value=4 Score=29.68 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=49.4
Q ss_pred ceeccchhH-----Hhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243 2 QWDTAGQER-----FRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY 74 (144)
Q Consensus 2 i~Dt~G~~~-----~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 74 (144)
|+||+|... ...+ ..++ ...+-++||+|++.. .+++..++..+.. -.+-=+|+||.|-... .
T Consensus 159 iIDt~Gr~~~~~~~l~el-~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~~----~ 227 (270)
T PRK06731 159 LIDTAGKNYRASETVEEM-IETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETAS----S 227 (270)
T ss_pred EEECCCCCcCCHHHHHHH-HHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCCC----c
Confidence 689999642 1222 2222 245678999997642 2333344444432 2345788999996432 2
Q ss_pred HHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243 75 ETAKAFADEIGIPFMETSAKDSTNVE 100 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~~Sa~~~~~i~ 100 (144)
=.+..+....+.|+..++ +|+++-
T Consensus 228 G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 228 GELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred cHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 244566667788887777 444443
No 399
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.92 E-value=9.3 Score=32.08 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=52.8
Q ss_pred ceeccchhH----Hhhhhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQER----FRTITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~----~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|... ........ ....+-.++|+|.+.. .+++.+....+..... ..+-=+|+||.|-... .=
T Consensus 268 LIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~-~~i~glIlTKLDEt~~----~G 340 (767)
T PRK14723 268 LIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG-EDVDGCIITKLDEATH----LG 340 (767)
T ss_pred EEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc-CCCCEEEEeccCCCCC----cc
Confidence 789999422 11111111 2245678899998743 2333333333332211 0234678999996432 22
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCH-HHHHH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNV-EQAFM 104 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~ 104 (144)
.+..+....++|+..++ +|+++ +++..
T Consensus 341 ~iL~i~~~~~lPI~yit--~GQ~VPdDL~~ 368 (767)
T PRK14723 341 PALDTVIRHRLPVHYVS--TGQKVPEHLEL 368 (767)
T ss_pred HHHHHHHHHCCCeEEEe--cCCCChhhccc
Confidence 44566777889988888 66777 55544
No 400
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=88.70 E-value=2.6 Score=25.35 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=27.8
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN 45 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 45 (144)
++|+|+.... .....+..+|.++++++.+ ..++..+..++.
T Consensus 44 iiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 44 IIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred EEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 6899886432 2336677899999999874 445666666555
No 401
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=88.43 E-value=5.9 Score=26.74 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=57.8
Q ss_pred hcCCCEEEEEEeCCCH-------HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEe
Q 032243 19 YRGAHGIIIVYDVTDQ-------ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET 91 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (144)
++....=.+++|.++- .-..++..|+..++..... ..+++|-|-.=..+ .....++..+.+.++++++.-
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~-~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h 112 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGK-DRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRH 112 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCC-CeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEe
Confidence 4555555667776541 2235678899988876532 24788888753322 234678888889999999999
Q ss_pred ecCCCCCHHHHHHHHH
Q 032243 92 SAKDSTNVEQAFMAMA 107 (144)
Q Consensus 92 Sa~~~~~i~~l~~~i~ 107 (144)
+++...+..+++..+.
T Consensus 113 ~~kKP~~~~~i~~~~~ 128 (168)
T PF09419_consen 113 RAKKPGCFREILKYFK 128 (168)
T ss_pred CCCCCccHHHHHHHHh
Confidence 8888877776666553
No 402
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=88.41 E-value=1.3 Score=29.72 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCHHHHHHHHH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 107 (144)
+.....+.++++++.+|++++.|++++.+.+.
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~ 34 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLK 34 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc
Confidence 34556667777888888888888887777554
No 403
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=88.14 E-value=7 Score=28.00 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=42.6
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcE-EEEEeCCCCCCCcccCHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNK-LLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~-ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
|+||+|...... ....+.-+|.+|+++.. +..++..+...+..+.... ....++ -++.|+.+. ......
T Consensus 122 iIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~~~~~~ 192 (270)
T PRK13185 122 LFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------TDLIDK 192 (270)
T ss_pred EEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------HHHHHH
Confidence 578876532221 22335678999998865 4455555555555443221 224554 478899763 233344
Q ss_pred HHHHcCCcE
Q 032243 80 FADEIGIPF 88 (144)
Q Consensus 80 ~~~~~~~~~ 88 (144)
+.+..+.++
T Consensus 193 ~~~~~g~~v 201 (270)
T PRK13185 193 FNEAVGLKV 201 (270)
T ss_pred HHHHcCCCE
Confidence 555555443
No 404
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.05 E-value=5.1 Score=30.78 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=52.1
Q ss_pred ceeccchhHHhh----hhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243 2 QWDTAGQERFRT----ITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY 74 (144)
Q Consensus 2 i~Dt~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 74 (144)
|.||+|....+. -...++.. .+-.++|+|++.. .+++...+..+... .+-=+|+||.|-... .
T Consensus 259 LIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~~----~ 328 (388)
T PRK12723 259 LVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETTC----V 328 (388)
T ss_pred EEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCCc----c
Confidence 689999643221 12233332 2368899998764 34444433333211 245788999996322 2
Q ss_pred HHHHHHHHHcCCcEEEeecCCCCCH-HHHHH
Q 032243 75 ETAKAFADEIGIPFMETSAKDSTNV-EQAFM 104 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~ 104 (144)
=.+..+....++|+..++ +|+++ +++..
T Consensus 329 G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~ 357 (388)
T PRK12723 329 GNLISLIYEMRKEVSYVT--DGQIVPHNISI 357 (388)
T ss_pred hHHHHHHHHHCCCEEEEe--CCCCChhhhhh
Confidence 344566777788887777 56666 44433
No 405
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=87.95 E-value=6.2 Score=27.91 Aligned_cols=61 Identities=8% Similarity=0.063 Sum_probs=38.7
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHH---hcCCCCcEEEEEeCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR---YASDNVNKLLVGNKCD 65 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D 65 (144)
|+||||... ......+..+|.+|+.+..+. .++......+..+.. ......+..++.|..+
T Consensus 88 iID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 88 LADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred EEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 789999653 344566778999998887643 334444444333322 2233577889999986
No 406
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.48 E-value=4.6 Score=31.98 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=50.5
Q ss_pred ceeccchhHHhh---hhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERFRT---ITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
++||+|...... .....+.. ..-.++|+|.+-. ...+.+....+.. ....-+|+||.|-.. ..-
T Consensus 339 LIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~~~g~IlTKlDet~----~~G 408 (484)
T PRK06995 339 LIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PGLAGCILTKLDEAA----SLG 408 (484)
T ss_pred EeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CCCCEEEEeCCCCcc----cch
Confidence 689999432221 11111222 2336788887643 2333333333322 234567799999532 234
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCH-HHHHH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNV-EQAFM 104 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~ 104 (144)
.+..+....++++..++ +|+++ +++..
T Consensus 409 ~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~ 436 (484)
T PRK06995 409 GALDVVIRYKLPLHYVS--NGQRVPEDLHL 436 (484)
T ss_pred HHHHHHHHHCCCeEEEe--cCCCChhhhcc
Confidence 55667778889988888 66777 55544
No 407
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.42 E-value=6.4 Score=30.62 Aligned_cols=80 Identities=14% Similarity=0.080 Sum_probs=46.5
Q ss_pred ceeccchhH-----Hhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243 2 QWDTAGQER-----FRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY 74 (144)
Q Consensus 2 i~Dt~G~~~-----~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 74 (144)
|+||+|... ...+ ..++ ...+.++||+|++-. ..++..++..+... ..-=+|+||.|-... .
T Consensus 325 LIDTaGRs~kd~~lm~EL-~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~k----~ 393 (436)
T PRK11889 325 LIDTAGKNYRASETVEEM-IETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETAS----S 393 (436)
T ss_pred EEeCccccCcCHHHHHHH-HHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCCC----c
Confidence 689999733 2222 2323 235778899987532 23334444444321 244778999996432 2
Q ss_pred HHHHHHHHHcCCcEEEee
Q 032243 75 ETAKAFADEIGIPFMETS 92 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~~S 92 (144)
=.+..++...++|+..++
T Consensus 394 G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 394 GELLKIPAVSSAPIVLMT 411 (436)
T ss_pred cHHHHHHHHHCcCEEEEe
Confidence 244566677788877776
No 408
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=86.86 E-value=6.9 Score=25.86 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=47.7
Q ss_pred ceeccchhHHhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----ccc-C
Q 032243 2 QWDTAGQERFRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-----KVV-S 73 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~-~ 73 (144)
|.|||+... ......+ ..+|.++++...+ ..++..+..++..+.... ....-++.|+.+...+ ... .
T Consensus 72 IiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~~~~~~~ 146 (169)
T cd02037 72 VIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGKKIYIFG 146 (169)
T ss_pred EEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCCcccccC
Confidence 678887532 1112222 5789999999765 456777777777776653 2334678999874211 111 1
Q ss_pred HHHHHHHHHHcCCcEE
Q 032243 74 YETAKAFADEIGIPFM 89 (144)
Q Consensus 74 ~~~~~~~~~~~~~~~~ 89 (144)
......+.+..+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 147 KGGGEKLAEELGVPLL 162 (169)
T ss_pred CccHHHHHHHcCCCEE
Confidence 2344556666665443
No 409
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=86.81 E-value=4.2 Score=30.30 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=46.9
Q ss_pred ceeccchhHHhhhhhhhhc--------CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243 2 QWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 73 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 73 (144)
+.+|.|.....++...++. ..++++.|+|..+.....+-.... ..+.. .-=+|++||.|+.+.
T Consensus 95 vIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~--~~Qi~---~AD~IvlnK~Dl~~~---- 165 (318)
T PRK11537 95 VIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIA--QSQVG---YADRILLTKTDVAGE---- 165 (318)
T ss_pred EEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHH--HHHHH---hCCEEEEeccccCCH----
Confidence 4566676554444444322 258999999987533221101111 11111 123788999998653
Q ss_pred HHHHHHHHHHcC--CcEEEeecCCCCCHHHHH
Q 032243 74 YETAKAFADEIG--IPFMETSAKDSTNVEQAF 103 (144)
Q Consensus 74 ~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~ 103 (144)
.+.+....+..+ .+++.++ ........++
T Consensus 166 ~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 166 AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 234444555443 4666554 2234444444
No 410
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=86.57 E-value=8.5 Score=26.55 Aligned_cols=66 Identities=23% Similarity=0.234 Sum_probs=38.9
Q ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CC-cEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEE
Q 032243 20 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NV-NKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME 90 (144)
Q Consensus 20 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~-p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (144)
+-+|.++++++.+ ..++..+...+..+...... .. ...++.|+.+.. ........+.+..+.+++.
T Consensus 140 ~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 140 GKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RETELIDAFAERLGTQVIH 207 (212)
T ss_pred ccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cHHHHHHHHHHHcCCCEEE
Confidence 3689999999774 44555555555555443221 22 345889999852 2234556666666765543
No 411
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=86.53 E-value=4.3 Score=31.32 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=50.6
Q ss_pred ceeccchhHHhh----hhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERFRT----ITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|...++. -+..|+. ...-+.||++++.. ..++...+..+.... .-=+|+||.|-.. +.=
T Consensus 286 LVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~----i~~~I~TKlDET~----s~G 355 (407)
T COG1419 286 LVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP----IDGLIFTKLDETT----SLG 355 (407)
T ss_pred EEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC----cceeEEEcccccC----chh
Confidence 689999754333 2344443 34556677777654 455666555554332 2367899999532 233
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNV 99 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i 99 (144)
....+....+.|+..++ +|+++
T Consensus 356 ~~~s~~~e~~~PV~YvT--~GQ~V 377 (407)
T COG1419 356 NLFSLMYETRLPVSYVT--NGQRV 377 (407)
T ss_pred HHHHHHHHhCCCeEEEe--CCCCC
Confidence 45556667777777776 44444
No 412
>PRK10818 cell division inhibitor MinD; Provisional
Probab=86.49 E-value=7.9 Score=27.69 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=38.4
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc----C--CCCcEEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----S--DNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~--~~~p~ilv~nK~Dl 66 (144)
|.|+|+..... ....+..+|.++++++.+. .++..+..++..+.... . ......+++|..|.
T Consensus 118 iiD~p~~~~~~--~~~~l~~ad~vivv~~p~~-~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 118 VCDSPAGIETG--ALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred EEeCCCCccHH--HHHHHHhCCeEEEEcCCCc-hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 67888765332 2344678999999998764 45555655555554221 1 12335778898885
No 413
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=86.18 E-value=9.5 Score=26.74 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=36.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
|+|||+.... .....+..+|.++++++.+-. ++.++...+...... ......+++|+.+.
T Consensus 113 IiD~p~~~~~--~~~~~l~~ad~vliv~~~~~~-s~~~~~~~~~~~~~~--~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 113 LIDAPAGLER--DAVTALAAADELLLVVNPEIS-SITDALKTKIVAEKL--GTAILGVVLNRVTR 172 (251)
T ss_pred EEeCCCccCH--HHHHHHHhCCeEEEEECCCCc-hHHHHHHHHHHHHhc--CCceEEEEEECCCc
Confidence 6899876432 334456679999999987643 444443333333222 12235688999985
No 414
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.96 E-value=7 Score=29.89 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=45.6
Q ss_pred ceeccchhHHhh----hhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--C---CCcEEEEEeCCCCCCCc
Q 032243 2 QWDTAGQERFRT----ITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--D---NVNKLLVGNKCDLTANK 70 (144)
Q Consensus 2 i~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~---~~p~ilv~nK~Dl~~~~ 70 (144)
|+||+|....+. ....+ ....+-.++|++.+... +.+...+..+..... . ..+-=+|+||.|-...
T Consensus 220 LIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~- 296 (374)
T PRK14722 220 LIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN- 296 (374)
T ss_pred EEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence 789999653222 12221 12345668899887532 223333333322210 0 0134677899996322
Q ss_pred ccCHHHHHHHHHHcCCcEEEee
Q 032243 71 VVSYETAKAFADEIGIPFMETS 92 (144)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~S 92 (144)
.=.+..+....++|+..++
T Consensus 297 ---~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 297 ---LGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ---ccHHHHHHHHHCcCeEEEe
Confidence 2345566777788877777
No 415
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=85.01 E-value=1.2 Score=31.39 Aligned_cols=108 Identities=16% Similarity=0.228 Sum_probs=57.6
Q ss_pred ceeccchhHH---hhhhhhhhc-----C-CCEEEEEEeCCC-HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 2 QWDTAGQERF---RTITSSYYR-----G-AHGIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 2 i~Dt~G~~~~---~~~~~~~~~-----~-~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
++|+|||-+. .+.++..++ + --.+++++|..= -++..-+...+..+...-.-.+|.|-|++|.||....
T Consensus 102 ifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk~~- 180 (273)
T KOG1534|consen 102 IFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLKDK- 180 (273)
T ss_pred EEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhhhh-
Confidence 6899998542 222222222 1 234566666421 0122222222333322111258999999999986441
Q ss_pred cCHHHH-------------------------------HHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 72 VSYETA-------------------------------KAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 72 ~~~~~~-------------------------------~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.+++ .++....++ .+++....+.+.++.++..|-.+++
T Consensus 181 -~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 181 -NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred -hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 11111 111222232 6788888888888888888877775
No 416
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=84.14 E-value=8.3 Score=27.45 Aligned_cols=98 Identities=7% Similarity=0.152 Sum_probs=56.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
|.||.|.... +....+..+|.+|+=+-.+.-+.- .....|+..+.......+|.-|+.|+..-.... ........
T Consensus 88 lvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~-~~~~~~~e 164 (231)
T PF07015_consen 88 LVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLT-RAQRIISE 164 (231)
T ss_pred EEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhh-HHHHHHHH
Confidence 6788775422 124456679999988766533221 122344555544444579999999998742111 11112222
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~ 104 (144)
+.+ ++|++.+.-.......+++.
T Consensus 165 ~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 165 QLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHh--cCCccccccccHHHHHHHHH
Confidence 332 48888888777666666665
No 417
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.51 E-value=18 Score=28.22 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=52.5
Q ss_pred ceeccchhHH----hhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERF----RTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
+.||+|.... ......+. ...+-.++|+|.+.. .+++..++..+.. -..-=+|+||.|-... .=
T Consensus 274 LIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~----~~~~~~I~TKlDEt~~----~G 343 (420)
T PRK14721 274 LIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG----HGIHGCIITKVDEAAS----LG 343 (420)
T ss_pred EecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeeeCCCC----cc
Confidence 6899996432 12222222 124567889988743 2334444444322 1344678999996322 23
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCH-HHHHH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNV-EQAFM 104 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~ 104 (144)
.+..+....++|+..++ +|.++ +++..
T Consensus 344 ~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~ 371 (420)
T PRK14721 344 IALDAVIRRKLVLHYVT--NGQKVPEDLHE 371 (420)
T ss_pred HHHHHHHHhCCCEEEEE--CCCCchhhhhh
Confidence 45567777888888888 66666 44443
No 418
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.44 E-value=15 Score=27.75 Aligned_cols=90 Identities=21% Similarity=0.149 Sum_probs=50.5
Q ss_pred ceeccchhH-------HhhhhhhhhcCCC-----EEEEEEeCCC-HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 2 QWDTAGQER-------FRTITSSYYRGAH-----GIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 2 i~Dt~G~~~-------~~~~~~~~~~~~d-----~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
|.||+|... ...-....+...+ -+++++|.+- .+.+...+. +.... .--=+|+||.|-..
T Consensus 226 liDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~----F~eav---~l~GiIlTKlDgtA 298 (340)
T COG0552 226 LIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI----FNEAV---GLDGIILTKLDGTA 298 (340)
T ss_pred EEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH----HHHhc---CCceEEEEecccCC
Confidence 689999632 1111223333333 3777779764 344444332 22211 23367899999532
Q ss_pred CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHH
Q 032243 69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 104 (144)
.-. .+..++..+++|+..+. -|+++++|..
T Consensus 299 KGG----~il~I~~~l~~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 299 KGG----IILSIAYELGIPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred Ccc----eeeeHHHHhCCCEEEEe--CCCChhhccc
Confidence 211 23456778889998888 5677777754
No 419
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=83.37 E-value=14 Score=26.40 Aligned_cols=63 Identities=19% Similarity=0.127 Sum_probs=34.6
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcE-EEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNK-LLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~-ilv~nK~Dl 66 (144)
|.||+|...... ....+..+|.+|++...+ ..++..+...+..+.... ....++ .+|.|+.+.
T Consensus 120 IIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 120 LFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred EEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 578876532221 122367799999988764 334444444444333221 123443 467999884
No 420
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=82.74 E-value=12 Score=28.26 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=49.1
Q ss_pred ceeccchhHHhhhhhhhh-------cCCCEEEEEEeCCCHHH--H-------H-------------HHHHHHHHHHHhcC
Q 032243 2 QWDTAGQERFRTITSSYY-------RGAHGIIIVYDVTDQES--F-------N-------------NVKQWLNEIDRYAS 52 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~-------~-------------~~~~~~~~~~~~~~ 52 (144)
+.+|.|.....++...+. -..|+++.|+|..+-.. + . .+..++.. +..
T Consensus 97 vIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Qi~- 173 (341)
T TIGR02475 97 LIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFED--QLA- 173 (341)
T ss_pred EEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHH--HHH-
Confidence 456777655555444431 14689999999864321 0 0 01111111 111
Q ss_pred CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cC-C-cEEEeecCCCCCHHHHHH
Q 032243 53 DNVNKLLVGNKCDLTANKVVSYETAKAFADE-IG-I-PFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 53 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~-~~~~~Sa~~~~~i~~l~~ 104 (144)
.-=+|++||.|+.+... ........+. .. . +++.++ ....+...++.
T Consensus 174 --~AD~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 174 --CADLVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred --hCCEEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 22488899999875433 2334444444 33 2 455554 33466666665
No 421
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=82.51 E-value=6 Score=27.05 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=36.3
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
|+|||..... .........+|.+|+|.+... .+...+...+..+.... ....-+|+||.|..
T Consensus 132 iiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~~--~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 132 IIDTPPIGTV-TDAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQTG--SNFLGVVLNKVDIS 193 (204)
T ss_pred EEeCCCcccc-chHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhCC--CCEEEEEEeCcccc
Confidence 5788753211 112234567899999998753 34455555555554332 23457789999864
No 422
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.16 E-value=7.3 Score=23.42 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=25.0
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHH
Q 032243 55 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 106 (144)
Q Consensus 55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 106 (144)
.-+||+.+-.= .+ .....+...++..+.|++.+... |+..+.+.|
T Consensus 49 aD~VIv~t~~v--sH--~~~~~vk~~akk~~ip~~~~~~~---~~~~l~~~l 93 (97)
T PF10087_consen 49 ADLVIVFTDYV--SH--NAMWKVKKAAKKYGIPIIYSRSR---GVSSLERAL 93 (97)
T ss_pred CCEEEEEeCCc--Ch--HHHHHHHHHHHHcCCcEEEECCC---CHHHHHHHH
Confidence 35566655442 21 12456677777888877777544 444444443
No 423
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=82.02 E-value=6.1 Score=30.10 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=29.6
Q ss_pred CCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcCCcEEEeecCCC
Q 032243 54 NVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFMETSAKDS 96 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~ 96 (144)
..|+++++||.|...... + .+.+..++...+.+++++||.-.
T Consensus 206 ~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~~E 249 (372)
T COG0012 206 AKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAAIE 249 (372)
T ss_pred cCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHHHH
Confidence 589999999999743222 2 34455566666778999998743
No 424
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.91 E-value=13 Score=29.07 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=45.4
Q ss_pred ceeccchhH----Hhhhhhhhhc-----CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 2 QWDTAGQER----FRTITSSYYR-----GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 2 i~Dt~G~~~----~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
|+||+|... ....+..++. ..+-.+||+|++-.. +++......+.. -.+-=+|+||.|-...
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~--- 374 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADF--- 374 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCC---
Confidence 689999632 1111222222 234688899987542 233333333311 1345788999996322
Q ss_pred CHHHHHHHHHHcCCcEEEeec
Q 032243 73 SYETAKAFADEIGIPFMETSA 93 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa 93 (144)
.=.+..+....++|+..++.
T Consensus 375 -~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 375 -LGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred -ccHHHHHHHHHCCCEEEEec
Confidence 22355667778888777763
No 425
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=80.70 E-value=21 Score=28.12 Aligned_cols=82 Identities=12% Similarity=0.268 Sum_probs=49.9
Q ss_pred CCEEEEEEeCC--C--HHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCC-
Q 032243 22 AHGIIIVYDVT--D--QESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD- 95 (144)
Q Consensus 22 ~d~~i~v~d~~--~--~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~- 95 (144)
.-++++--|.+ + ++.|.+.. +.+..+... +.|+++++|-.+=. ..-+.+.+..+.+.++.+++++++..
T Consensus 146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l 220 (492)
T PF09547_consen 146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQL 220 (492)
T ss_pred ceeEEEecCCCccCCChHHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHc
Confidence 45666666643 2 34555443 355556555 48999999988732 22234556667778899999998765
Q ss_pred -CCCHHHHHHHHHH
Q 032243 96 -STNVEQAFMAMAA 108 (144)
Q Consensus 96 -~~~i~~l~~~i~~ 108 (144)
..+|..+++.++-
T Consensus 221 ~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 221 REEDITRILEEVLY 234 (492)
T ss_pred CHHHHHHHHHHHHh
Confidence 2345555544443
No 426
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.63 E-value=14 Score=29.51 Aligned_cols=88 Identities=17% Similarity=0.213 Sum_probs=50.5
Q ss_pred ceeccchhHHhh-h---hhhh--hcCCCEEEEEEeC-CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243 2 QWDTAGQERFRT-I---TSSY--YRGAHGIIIVYDV-TDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY 74 (144)
Q Consensus 2 i~Dt~G~~~~~~-~---~~~~--~~~~d~~i~v~d~-~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 74 (144)
+.||+|...-+. + ...+ +...|.++||-.+ -..++.+.+...-..+.....+...--++++|+|..+...
T Consensus 471 LiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~d~v--- 547 (587)
T KOG0781|consen 471 LIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVDDKV--- 547 (587)
T ss_pred EEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchhhHH---
Confidence 689999753222 1 1222 3468999999753 3345666666666666555433333467899999753221
Q ss_pred HHHHHHHHHcCCcEEEee
Q 032243 75 ETAKAFADEIGIPFMETS 92 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~~S 92 (144)
-.+..+....+.|++.+.
T Consensus 548 g~~~~m~y~~~~pi~fvg 565 (587)
T KOG0781|consen 548 GAAVSMVYITGKPILFVG 565 (587)
T ss_pred HHHhhheeecCCceEEEe
Confidence 122233334467877775
No 427
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=79.69 E-value=2 Score=28.89 Aligned_cols=58 Identities=26% Similarity=0.397 Sum_probs=31.2
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 84 (144)
..+.++.|+|.........+...+...... -=++++||.|+.+... ..+......+..
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADvIvlnK~D~~~~~~-~i~~~~~~ir~l 170 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAF-----ADVIVLNKIDLVSDEQ-KIERVREMIREL 170 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH---HHHHHHHHHHH
T ss_pred cccceeEEeccccccccccchhhhhhcchh-----cCEEEEeccccCChhh-HHHHHHHHHHHH
Confidence 579999999997754334333333222222 2388899999854321 123444444443
No 428
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=76.87 E-value=20 Score=28.66 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEee--cCCCCCHHHHHHHHHHHHH
Q 032243 43 WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS--AKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 43 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~i~~~~~ 111 (144)
+..++........|+||.+|++....+.+ .+.+..+++..++++..+. ++-|.|-.++-+.+++.+.
T Consensus 345 L~~Hi~n~~~fg~p~VVaiN~F~~Dt~~E--i~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 345 LRKHIENIKKFGVPVVVAINKFSTDTDAE--LALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred HHHHHHHHHHcCCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 33344333334699999999998643333 4567788888888766553 5557888888888887775
No 429
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=74.86 E-value=20 Score=24.88 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=37.4
Q ss_pred ceeccchhH-HhhhhhhhhcC--CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 2 QWDTAGQER-FRTITSSYYRG--AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~-~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
|+|||.... .+.+....+.+ +|.+++|...+ ..+...+...+..+..... ...-+|+|+...
T Consensus 118 IiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~~--~~~glVlN~~~~ 182 (217)
T cd02035 118 VFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYGI--PVDAVVVNRVLP 182 (217)
T ss_pred EECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCCC--CCCEEEEeCCcC
Confidence 688885422 22223333433 47888888765 4556667776666665432 234678898875
No 430
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=74.44 E-value=34 Score=27.13 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEe--ecCCCCCHHHHHHHHHHHHHH
Q 032243 43 WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET--SAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 43 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+..++.......+|++|.+||+-...+ .+...+..++...+.++..+ =++-|.|-.++-+.++..+.+
T Consensus 358 L~~Hi~Nikkfgvp~VVAIN~F~tDt~--~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 358 LLKHIENIKKFGVPVVVAINKFPTDTE--AEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred HHHHHHHHHHcCCCeEEEeccCCCCCH--HHHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 333333333346999999999975332 23456677888888765543 467788999999999888864
No 431
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=74.09 E-value=32 Score=25.27 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=49.1
Q ss_pred cCCCEEEEEEeCCCHHHHHHH---HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEee----
Q 032243 20 RGAHGIIIVYDVTDQESFNNV---KQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS---- 92 (144)
Q Consensus 20 ~~~d~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S---- 92 (144)
..+|.++++.+.+ ..++..+ ...+..+......-.+..+|.|+.+.. .....+++..+++++..-
T Consensus 146 ~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~-------~~~~~~~~~~~i~vLg~IP~d~ 217 (296)
T TIGR02016 146 SLAEEVIVIGSND-RQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS-------GEAQAFAREVGIPVLAAIPADE 217 (296)
T ss_pred hhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc-------cHHHHHHHHcCCCeEEECCCCH
Confidence 3588888887653 3444433 333333333221223567889998741 133455666665433210
Q ss_pred ------------c-CCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243 93 ------------A-KDSTNVEQAFMAMAASIKDRMASQPS 119 (144)
Q Consensus 93 ------------a-~~~~~i~~l~~~i~~~~~~~~~~~~~ 119 (144)
. .......+.|..+++.+.......+.
T Consensus 218 ~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~~~~~~~ 257 (296)
T TIGR02016 218 ELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAPPLRPR 257 (296)
T ss_pred HHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 0 11122668888888888765554443
No 432
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=73.68 E-value=29 Score=28.16 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEee--cCCCCCHHHHHHHHHHHHH
Q 032243 43 WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS--AKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 43 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~i~~~~~ 111 (144)
+..++........|+||.+|++....+.+ .+.+.++++..++.+..+. ++-|.|-.+|-+.+++.+.
T Consensus 390 L~~Hi~n~~~fg~pvVVaiN~F~~Dt~~E--i~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 390 LLHHIGTVKKSGINPVVCINAFYTDTHAE--IAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred HHHHHHHHHHcCCCeEEEeCCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 33344333334699999999998543332 4566778888888665443 4456788888888887765
No 433
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=70.26 E-value=6 Score=24.71 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=17.2
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHHcC-CcEEEeecC
Q 032243 60 VGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAK 94 (144)
Q Consensus 60 v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 94 (144)
++||+|+.. +.+.+.++.+.+. ..++++||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 589999732 2445555555543 688899976
No 434
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=70.02 E-value=4.5 Score=29.07 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.7
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 86 IPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 86 ~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.|++..||+++.|++.+++.+...+
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 3899999999999999999998875
No 435
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=69.44 E-value=7.7 Score=31.17 Aligned_cols=89 Identities=13% Similarity=0.214 Sum_probs=49.4
Q ss_pred CCCEEEEEEeCC-------------CHHHHHHH----HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 032243 21 GAHGIIIVYDVT-------------DQESFNNV----KQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE 83 (144)
Q Consensus 21 ~~d~~i~v~d~~-------------~~~s~~~~----~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 83 (144)
.-|++++|..+. ..+..+.+ .++..++........|+||.+|++....+.+ .+.+.++++.
T Consensus 321 ~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aE--i~~I~~~~~~ 398 (557)
T PF01268_consen 321 KPDAVVLVATVRALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAE--IELIRELCEE 398 (557)
T ss_dssp --SEEEEEEEHHHHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHH--HHHHHHHCCC
T ss_pred CcceEEEeeechHHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHH--HHHHHHHHHh
Confidence 468888887531 11222333 2344444444445799999999997543222 3455666777
Q ss_pred cCCcEEEee--cCCCCCHHHHHHHHHHHHH
Q 032243 84 IGIPFMETS--AKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 84 ~~~~~~~~S--a~~~~~i~~l~~~i~~~~~ 111 (144)
.|+++..+. ++-|.|-.++.+.+++.+.
T Consensus 399 ~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~e 428 (557)
T PF01268_consen 399 LGVRAAVSEHWAKGGEGAVELAEAVVEACE 428 (557)
T ss_dssp CCEEEEEC-HHHHGGGGCHHHHHHHHHH-H
T ss_pred CCCCEEEechhhcccccHHHHHHHHHHHhh
Confidence 777744443 5557889999999999984
No 436
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=69.40 E-value=38 Score=24.14 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=34.2
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcE-EEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNK-LLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~-ilv~nK~Dl 66 (144)
|+||+|....... ...+.-+|.+++++.. +..++..+...+..+.... ....++ .+|.|+.+.
T Consensus 120 iID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 120 LFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred EEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 5788764322111 1235678999998765 3445555555444443321 223443 577899874
No 437
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=69.30 E-value=46 Score=25.04 Aligned_cols=86 Identities=26% Similarity=0.293 Sum_probs=44.6
Q ss_pred CCEEEEEEeCCCHHHHH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEe-------
Q 032243 22 AHGIIIVYDVTDQESFN---NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET------- 91 (144)
Q Consensus 22 ~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------- 91 (144)
+|.++++. ..+..+.. .+...+..+..........-+|.||.|... ....+++..+++++..
T Consensus 173 ad~VIVVt-~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~-------~ie~~ae~lgi~vLg~IP~D~~V 244 (329)
T cd02033 173 AQKVIVVG-SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG-------EAQAFAAHAGIPILAAIPADEEL 244 (329)
T ss_pred CceEEEeC-CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc-------hHHHHHHHhCCCEEEECCCCHHH
Confidence 55555444 33444553 344445555443222233678899998521 2445555566543221
Q ss_pred ---------ecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 92 ---------SAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 92 ---------Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
-...+..+.+.|..+.+.+.....
T Consensus 245 ~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~~~ 277 (329)
T cd02033 245 RRKSAAYQIVGRPGTTWGPLFEQLATNVAEAPP 277 (329)
T ss_pred HHHHHcCCeecCCCCHHHHHHHHHHHHHHHhcC
Confidence 011223466778888888766443
No 438
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=68.24 E-value=45 Score=27.12 Aligned_cols=67 Identities=10% Similarity=-0.031 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCcEEEee--cCCCCCHHHHHHHHHHHHH
Q 032243 43 WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETS--AKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 43 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S--a~~~~~i~~l~~~i~~~~~ 111 (144)
+..++........|+||.+|++....+.+ .+.+..+++. .++++..+. ++-|.|-.+|-+.+++.+.
T Consensus 382 L~~Hi~n~~~fg~pvVVaiN~F~~Dt~~E--i~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 382 LKWHINNVAQYGLPVVVAINRFPTDTDEE--LEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred HHHHHHHHHHcCCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHhh
Confidence 33344333334799999999998543333 4566677777 566655554 5557888888888887775
No 439
>KOG4102 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.10 E-value=1.8 Score=27.23 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=8.2
Q ss_pred CCCCCCCCCcC
Q 032243 133 QPVAQKSGCCS 143 (144)
Q Consensus 133 ~~~~~~~~c~~ 143 (144)
+=-++|++|||
T Consensus 56 hMgrkKSKcCC 66 (121)
T KOG4102|consen 56 HMGRKKSKCCC 66 (121)
T ss_pred cccccccceeE
Confidence 34468899998
No 440
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=66.86 E-value=7.6 Score=28.02 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=33.8
Q ss_pred ceeccchhHH----hhhhh--hhhcCCC---EEEEEEe---CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERF----RTITS--SYYRGAH---GIIIVYD---VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~----~~~~~--~~~~~~d---~~i~v~d---~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
++|+|||-++ +.++. .+++..| .++-++| .+++..|-.. ++..+.....-..|-|-|+.|+|+.
T Consensus 101 lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~--lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 101 LFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS--LLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred EEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH--HHHHHHHHHhhcccchhhhhHhHHH
Confidence 6899998442 11211 1233333 3444555 3566666543 2222222222247889999999985
No 441
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=66.85 E-value=9.5 Score=28.00 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=50.6
Q ss_pred hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecC
Q 032243 15 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK 94 (144)
Q Consensus 15 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 94 (144)
...|-.....+.+=+|.+..+ ++..+... .-.+|++.++||+|...-++. . +. ......+++||.
T Consensus 200 l~eyR~hsAdi~Lr~DaT~Dd-------LIdvVegn-r~yVp~iyvLNkIdsISiEEL-----d-ii-~~iphavpISA~ 264 (358)
T KOG1487|consen 200 LSEYRIHSADIALRFDATADD-------LIDVVEGN-RIYVPCIYVLNKIDSISIEEL-----D-II-YTIPHAVPISAH 264 (358)
T ss_pred HHHhhhcchheeeecCcchhh-------hhhhhccC-ceeeeeeeeecccceeeeecc-----c-ee-eeccceeecccc
Confidence 334434455666777776432 22222221 114899999999996432211 1 11 111357899999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 032243 95 DSTNVEQAFMAMAASIK 111 (144)
Q Consensus 95 ~~~~i~~l~~~i~~~~~ 111 (144)
.+-|++++++.+-+.+.
T Consensus 265 ~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 265 TGWNFDKLLEKMWEYLK 281 (358)
T ss_pred cccchHHHHHHHhhcch
Confidence 99999999999888875
No 442
>PLN02759 Formate--tetrahydrofolate ligase
Probab=66.74 E-value=42 Score=27.53 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-cEEEee--cCCCCCHHHHHHHHHHHHH
Q 032243 44 LNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETS--AKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 44 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S--a~~~~~i~~l~~~i~~~~~ 111 (144)
..++........|+||.+|++....+. +.+.+..++...++ .+..+. ++-|.|-.+|-+.+++.+.
T Consensus 440 ~~Hi~n~~~fg~pvVVaiN~F~~Dt~~--Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 440 ARHIENTKSYGVNVVVAINMFATDTEA--ELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred HHHHHHHHHcCCCeEEEecCCCCCCHH--HHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 333433333469999999999864333 35667778888884 665554 4556888888888887775
No 443
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=66.64 E-value=1.6 Score=35.76 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=40.7
Q ss_pred HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 10 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 10 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
....|...|+..-..+++.+...+.+- . ...++...+...+....++.|++|.|+.+
T Consensus 157 qI~~mi~~yi~~~~~iILav~~an~d~-a-ts~alkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 157 EIKSMIEEYIEKPNRIILAVTPANSDI-A-TSPALVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred HHHHHHHHhccccchhhhhccchhhhh-h-cCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence 467788999999999999998766321 1 12345555666666677888899999854
No 444
>PF07491 PPI_Ypi1: Protein phosphatase inhibitor ; InterPro: IPR011107 These proteins include Ypi1, a novel Saccharomyces cerevisiae type 1 protein phosphatase inhibitor [] and ppp1r11/hcgv (O60927 from SWISSPROT), annotated as having protein phosphatase inhibitor activity [].
Probab=65.94 E-value=4.2 Score=22.45 Aligned_cols=9 Identities=44% Similarity=0.933 Sum_probs=6.3
Q ss_pred CCCCCCCcC
Q 032243 135 VAQKSGCCS 143 (144)
Q Consensus 135 ~~~~~~c~~ 143 (144)
.+++++|||
T Consensus 32 gkkkSK~CC 40 (60)
T PF07491_consen 32 GKKKSKCCC 40 (60)
T ss_pred ccccCceee
Confidence 457777777
No 445
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=65.17 E-value=31 Score=21.45 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=30.7
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 64 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 64 (144)
-.++++..+|+|.+ ....+....++..++.... .+|++++.++.
T Consensus 34 ~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~-~iPVFl~~~~~ 77 (115)
T PF03709_consen 34 ESFTDIAAVVISWD-GEEEDEAQELLDKIRERNF-GIPVFLLAERD 77 (115)
T ss_dssp HCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHST-T-EEEEEESCC
T ss_pred HhCCCeeEEEEEcc-cccchhHHHHHHHHHHhCC-CCCEEEEecCC
Confidence 34688888888876 4444555667777776664 69999998855
No 446
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=64.72 E-value=53 Score=24.05 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=34.2
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCc-EEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVN-KLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p-~ilv~nK~Dl 66 (144)
|+||+|......+ ...+..+|.++++++.+ ..++..+...+..+.... ....+ .-++.|+.+.
T Consensus 120 iIDt~~~l~~~a~-~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 120 LFDVLGDVVCGGF-AAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred EEecCCcceechh-hhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 5777665221111 12356689999988764 445555555444443321 12233 3478899873
No 447
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=63.76 E-value=14 Score=26.73 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.6
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 86 IPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 86 ~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+|++..||.++.|+..+++.|...+
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 4888999999999999999998875
No 448
>PRK13695 putative NTPase; Provisional
Probab=61.90 E-value=44 Score=22.12 Aligned_cols=80 Identities=11% Similarity=0.077 Sum_probs=43.7
Q ss_pred hhhhcCCCEEEEEEe---CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEee
Q 032243 16 SSYYRGAHGIIIVYD---VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 92 (144)
Q Consensus 16 ~~~~~~~d~~i~v~d---~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 92 (144)
...+.+++. +++| ..+..+ ......+..+. ....|++++.+|... ......+....+..++.+
T Consensus 91 ~~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~---~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~- 156 (174)
T PRK13695 91 ERALEEADV--IIIDEIGKMELKS-PKFVKAVEEVL---DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL- 156 (174)
T ss_pred HhccCCCCE--EEEECCCcchhhh-HHHHHHHHHHH---hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE-
Confidence 344556776 5778 322212 11222233332 235799999998543 122333444445566666
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 032243 93 AKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 93 a~~~~~i~~l~~~i~~~~~ 111 (144)
+.+|.+++.+.+...++
T Consensus 157 --~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 157 --TPENRDSLPFEILNRLK 173 (174)
T ss_pred --cchhhhhHHHHHHHHHh
Confidence 55678888888887764
No 449
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=61.69 E-value=71 Score=26.25 Aligned_cols=67 Identities=19% Similarity=0.114 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcC-CcEEEee--cCCCCCHHHHHHHHHHHHH
Q 032243 43 WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIG-IPFMETS--AKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 43 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~S--a~~~~~i~~l~~~i~~~~~ 111 (144)
+..++........|+||.+|++....+.+ .+.+.++++ ..+ .++..+. ++-|.|-.+|-+.+++.+.
T Consensus 426 L~~Hien~~~fgvpvVVAIN~F~tDT~~E--i~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~ 496 (625)
T PTZ00386 426 LQRHIQNIRKFGVPVVVALNKFSTDTDAE--LELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTE 496 (625)
T ss_pred HHHHHHHHHHcCCCeEEEecCCCCCCHHH--HHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHh
Confidence 33444333334799999999997543332 456677787 778 4655544 4556788888888887774
No 450
>TIGR03488 cas_Cas5p CRISPR-associated protein, Cas5p family. CC Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pgingi (Porphyromonas gingivalis) subtype, but shows some sequence similarity to genes of the Cas5 type (see TIGR02593).
Probab=61.62 E-value=7.4 Score=26.33 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=38.9
Q ss_pred hhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-C-
Q 032243 8 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-G- 85 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~- 85 (144)
---|+.+|...++++|+=.+-+..+..-.+.-+. +.-.++.-|+.|+.++..........+.++. .
T Consensus 113 ~~ffndlwkr~frr~dag~ih~~gtenidy~~i~------------dk~k~mcener~~e~~dk~d~~~le~f~kenid~ 180 (237)
T TIGR03488 113 PCFFNDLWKRAFRRADAGKIHFGGTENIDYRLIM------------DKFKFMCENERDEENEDKIDNHALEKFFKENIDF 180 (237)
T ss_pred cchHhHHHHHHHhhccCceecCCCcccceeeehh------------hhhhhhcccccchhhhhhhhhHHHHHHHHhcccc
Confidence 3447778888888888755555554432222211 1223556778887655544444445454433 1
Q ss_pred CcEEEeec
Q 032243 86 IPFMETSA 93 (144)
Q Consensus 86 ~~~~~~Sa 93 (144)
++++.+..
T Consensus 181 ~~~fyatp 188 (237)
T TIGR03488 181 FPFFYATP 188 (237)
T ss_pred eeeeeecC
Confidence 34444433
No 451
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.73 E-value=32 Score=28.77 Aligned_cols=61 Identities=16% Similarity=0.038 Sum_probs=39.2
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
|+|||+....... ......+|++++|+.. +..+...+...+..+.... ....-+|+|+.|.
T Consensus 660 iID~pp~~~~~d~-~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~~--~~~~GvvlN~~~~ 720 (754)
T TIGR01005 660 VVDVGTADPVRDM-RAAARLAIIMLLVTAY-DRVVVECGRADAQGISRLN--GEVTGVFLNMLDP 720 (754)
T ss_pred EEcCCCcchhHHH-HHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhcC--CceEEEEecCCCh
Confidence 6788876543222 2334568999999875 4455666767666666443 2334588999985
No 452
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=59.19 E-value=43 Score=24.75 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=36.9
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 64 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 64 (144)
|+|||+... ......+..+|.++++++.+ ..++..+..++..+.... ..+.++.|..
T Consensus 209 IID~p~~~~--~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~~---~~~~lVv~~~ 265 (322)
T TIGR03815 209 VVDLPRRLT--PAAETALESADLVLVVVPAD-VRAVAAAARVCPELGRRN---PDLRLVVRGP 265 (322)
T ss_pred EEeCCCCCC--HHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhhC---CCeEEEEeCC
Confidence 679987643 33566788999999999764 445666666666665443 2344455653
No 453
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=59.13 E-value=22 Score=28.67 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=47.8
Q ss_pred hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----------
Q 032243 16 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI----------- 84 (144)
Q Consensus 16 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------- 84 (144)
....++.-++..|+|.++..- .+ +..+..... ....++.+||.|+.+...- .-.........
T Consensus 105 ~~~~~~~~~~~~vvd~~d~p~--~i---~p~~~~~v~-~~~~~v~~n~vdl~p~d~~-~~~c~rc~~l~~~~~vk~~~~e 177 (572)
T KOG1249|consen 105 SEKQENPALARKVVDLSDEPC--SI---DPLLTNDVG-SPRLFVDGNKVDLLPKDSR-PGYCQRCHSLLHYGMIKAGGGE 177 (572)
T ss_pred hhhhhcccceEEeeecccCcc--cc---ccchhhccc-CCceEeecccccccccccc-chHHHHHHhhcccceeeccccc
Confidence 333445566677777776432 11 222222221 2236999999999654331 11111111110
Q ss_pred CC-------cEEEeecCCCCCHHHHHHHHHHHH
Q 032243 85 GI-------PFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 85 ~~-------~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+. ....++++++.|+++++-.|.+..
T Consensus 178 n~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 178 NLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred CCCcccchhhhhhhhhhhcccHHHHHHHhhhee
Confidence 01 235678999999999998887764
No 454
>PRK11670 antiporter inner membrane protein; Provisional
Probab=58.82 E-value=80 Score=24.13 Aligned_cols=62 Identities=15% Similarity=0.041 Sum_probs=32.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 67 (144)
|+|||..-....+....+-.+|++++|....... +.+....+..+.. .+.|+ -+|.|+.+..
T Consensus 220 IID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s-~~da~~~i~~~~~---~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 220 VLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIA-LIDAKKGIVMFEK---VEVPVLGIVENMSMHI 282 (369)
T ss_pred EEeCCCCCchHHHHHhhhccCCeEEEEecCchhH-HHHHHHHHHHHhc---cCCCeEEEEEcCCccc
Confidence 5677753221111122233579998888775433 3333333333322 24565 4778988753
No 455
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=57.49 E-value=11 Score=27.49 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcCCcEEEeecC
Q 032243 21 GAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFMETSAK 94 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~ 94 (144)
+.|+++++++.+... +-.++. . ++... ..+++|=|+.|+|.....++. ...+...++..++.++.....
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di~-~---mk~Ls-~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDIE-F---MKRLS-KRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFPED 184 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHHH-H---HHHHT-TTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S------
T ss_pred CcceEEEEEcCCCccchHHHHH-H---HHHhc-ccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeeccccc
Confidence 479999999987532 112221 2 22222 247899999999987644321 122333445567766664433
No 456
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=57.30 E-value=11 Score=27.29 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.5
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 86 IPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 86 ~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+|++..||.++.|+..|++.|...+
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHHC
Confidence 3888999999999999999998876
No 457
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.18 E-value=95 Score=24.52 Aligned_cols=81 Identities=15% Similarity=0.031 Sum_probs=40.9
Q ss_pred ceeccchhHHhh-----hhhh-hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERFRT-----ITSS-YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~~~-----~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|...... +..- -.-+.|-++||+|+.--. +..+.-..+.... --.=+|+||.|-...-.
T Consensus 187 IvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---dA~~~A~aF~e~l---~itGvIlTKlDGdaRGG---- 256 (451)
T COG0541 187 IVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---DAVNTAKAFNEAL---GITGVILTKLDGDARGG---- 256 (451)
T ss_pred EEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---HHHHHHHHHhhhc---CCceEEEEcccCCCcch----
Confidence 789999754322 2111 134689999999976422 1222222232221 22356789999532211
Q ss_pred HHHHHHHHcCCcEEEee
Q 032243 76 TAKAFADEIGIPFMETS 92 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~S 92 (144)
-+.+.....+.|+-.+.
T Consensus 257 aALS~~~~tg~PIkFiG 273 (451)
T COG0541 257 AALSARAITGKPIKFIG 273 (451)
T ss_pred HHHhhHHHHCCCeEEEe
Confidence 22334445565554444
No 458
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=56.57 E-value=35 Score=19.33 Aligned_cols=33 Identities=18% Similarity=-0.009 Sum_probs=20.8
Q ss_pred ceeccchhHHhhh-hhhhhcCCCEEEEEEeCCCH
Q 032243 2 QWDTAGQERFRTI-TSSYYRGAHGIIIVYDVTDQ 34 (144)
Q Consensus 2 i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~ 34 (144)
++|+++....... .......+|.++++++.+..
T Consensus 38 ivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 38 LIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 5777766432221 13456678999999987643
No 459
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=56.23 E-value=7.1 Score=24.42 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=11.6
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHH
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQ 42 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~ 42 (144)
+.+.|..-|.|+.+ .+..++++
T Consensus 10 ~~G~d~~~~~~~~~--~TV~~lKe 31 (111)
T PF13881_consen 10 ADGKDIGPFRFDPS--TTVADLKE 31 (111)
T ss_dssp TTS-EEEEEEE-TT--SBHHHHHH
T ss_pred eCCCcccccccCcc--ChHHHHHH
Confidence 45677777777763 34444443
No 460
>PRK10037 cell division protein; Provisional
Probab=52.82 E-value=80 Score=22.33 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=22.2
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVT 32 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 32 (144)
|+|||+... ......+.-+|.+|+++..+
T Consensus 122 iIDtpp~~~--~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 122 LLDLPRGAS--PLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred EEECCCCcc--HHHHHHHHhCCEEEEEcCcC
Confidence 679988743 34566778899999999875
No 461
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=52.77 E-value=52 Score=23.26 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=36.2
Q ss_pred eeccchhHHhhhhhhhh--cCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 3 WDTAGQERFRTITSSYY--RGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 3 ~Dt~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
=|+.|...-.......+ .++|+++++=|+.+.. ..+.+..++..+... ..|+++|--..|
T Consensus 11 SDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l---~~pv~~V~GNhD 73 (224)
T cd07388 11 SNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEA---HLPTFYVPGPQD 73 (224)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCceEEEcCCCC
Confidence 46777543333222233 4799999999998865 344455555555433 367877765566
No 462
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.36 E-value=66 Score=24.69 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=40.5
Q ss_pred CCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcCCcEEEeecCC
Q 032243 21 GAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFMETSAKD 95 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~ 95 (144)
++|++++.+..+... .++ +. .++... ..+.+|=|+.|+|.....++. ...+.+.+...++++|......
T Consensus 129 RVH~cLYFI~P~ghgL~p~D-i~----~Mk~l~-~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 129 RVHCCLYFISPTGHGLKPLD-IE----FMKKLS-KKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred ceEEEEEEeCCCCCCCcHhh-HH----HHHHHh-ccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence 689999999977642 222 21 122222 246777788899987654432 2234445556677777665443
No 463
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=52.17 E-value=56 Score=20.47 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
....+++..|++++.++.....+...+.+.|..+
T Consensus 92 ~k~~~l~~agiplir~~~~~~~~~~~l~~~l~~~ 125 (126)
T PF10881_consen 92 FKDRVLKKAGIPLIRISPKDSYSVEELRRDLREA 125 (126)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHHh
Confidence 3455677889999999999999999999887654
No 464
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=50.92 E-value=34 Score=26.03 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=31.5
Q ss_pred cCCCEEEEEEeCCC--HHHHHHHHHHHHHHHHhcCCCCcEEEE-EeCCC
Q 032243 20 RGAHGIIIVYDVTD--QESFNNVKQWLNEIDRYASDNVNKLLV-GNKCD 65 (144)
Q Consensus 20 ~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv-~nK~D 65 (144)
+++|++|+.=|+-+ .++...+......++.....++|++++ ||+-.
T Consensus 39 ~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~ 87 (390)
T COG0420 39 EKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDS 87 (390)
T ss_pred ccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCc
Confidence 36899999876544 245566666777777766667999888 55444
No 465
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=50.53 E-value=60 Score=23.37 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=34.3
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 64 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 64 (144)
.-.+|.++.+|...++..-..+..-+..++.+..++.|+.++-|--
T Consensus 152 AA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 152 AAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred HhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 3468999999988776655566666677777777789988876654
No 466
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=48.80 E-value=40 Score=21.64 Aligned_cols=39 Identities=13% Similarity=0.321 Sum_probs=29.2
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEE
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLL 59 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~il 59 (144)
.-|+.||.+-++...+-..+..|+..+...++ ..+|++.
T Consensus 83 q~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 83 QEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 36888888888777777788899999977654 3566654
No 467
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=48.37 E-value=1e+02 Score=22.14 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=27.5
Q ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCC
Q 032243 20 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCD 65 (144)
Q Consensus 20 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 65 (144)
.-+|.+++++.. ++.++..+...+..+........++ -++.|+.+
T Consensus 140 ~aad~vlip~~p-~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 140 GKAKEIYIVASG-ELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cccceEEEecCc-hHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 367888888875 4556666555555555432233444 37778765
No 468
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=47.74 E-value=73 Score=20.42 Aligned_cols=75 Identities=9% Similarity=0.132 Sum_probs=44.0
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCc-EEEeecCCCCCHHH
Q 032243 23 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQ 101 (144)
Q Consensus 23 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 101 (144)
++=+++++..+..+...+......+.......+++++-|+.-+ ++. ...+..|+. +|. .|.++.+
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~---------~~~-~~l~~~Gvd~~~~----~gt~~~~ 118 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPP---------QDF-DELKEMGVAEIFG----PGTPIPE 118 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCCh---------HhH-HHHHHCCCCEEEC----CCCCHHH
Confidence 4444555666666677777777777665443455555555532 111 235567763 332 3458888
Q ss_pred HHHHHHHHHH
Q 032243 102 AFMAMAASIK 111 (144)
Q Consensus 102 l~~~i~~~~~ 111 (144)
+++.+...+.
T Consensus 119 i~~~l~~~~~ 128 (132)
T TIGR00640 119 SAIFLLKKLR 128 (132)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 469
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=47.27 E-value=1e+02 Score=21.85 Aligned_cols=62 Identities=19% Similarity=0.125 Sum_probs=31.5
Q ss_pred ceeccchhHHhhhh-hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEE-EEEeCC
Q 032243 2 QWDTAGQERFRTIT-SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKL-LVGNKC 64 (144)
Q Consensus 2 i~Dt~G~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i-lv~nK~ 64 (144)
|+||+|......+. .....-+|.+++++..+ ..++..+..++..+..... .+.++. ++.|+.
T Consensus 121 iID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 121 IYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred EEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEecC
Confidence 67887654222221 11223589999998875 3455555555444433321 234444 445653
No 470
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=47.21 E-value=53 Score=20.20 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=25.8
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 64 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 64 (144)
+.|+ ++++.+....+..+..+...++.....++++++.|+-.
T Consensus 50 ~pdv--V~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 50 DADA--IGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred CCCE--EEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCC
Confidence 3454 44455555667778888888877643246666655543
No 471
>PF07846 Metallothio_Cad: Metallothionein family; InterPro: IPR012484 The sequence making up family 7 of the metallothionein superfamily are found repeated in metallothionein proteins expressed by two Tetrahymena species. Metallothioneins are low molecular mass, cysteine-rich metal-binding proteins that are thought to be involved in the regulation of levels of trace metals, and detoxification of these metals when present in excess []. Some of the metallothioneins found in this family (for example, Q8T6B3 from SWISSPROT) are known to be induced by cadmium and are thought to be involved in the cellular sequestration of toxic metal ions. The high proportion of cysteine residues allows the metal ions to be bound by the formation of clusters of metal-thiolate complexes []. Tetrahymena spp. metallothioneins differ from other eukaryotic metallothioneins mainly in the length of their sequences and in the cysteine-containing motifs they exhibit. ; GO: 0046870 cadmium ion binding
Probab=46.08 E-value=12 Score=15.79 Aligned_cols=8 Identities=50% Similarity=1.352 Sum_probs=5.2
Q ss_pred CCCCCcCC
Q 032243 137 QKSGCCST 144 (144)
Q Consensus 137 ~~~~c~~~ 144 (144)
..++|||+
T Consensus 14 PnsG~~C~ 21 (21)
T PF07846_consen 14 PNSGCCCV 21 (21)
T ss_pred CCCccccC
Confidence 45677774
No 472
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=45.57 E-value=82 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=12.6
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHH
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEI 47 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 47 (144)
...+|++|+|+.... .+..++...+..+
T Consensus 233 ~~~~d~vilV~~~~~-t~~~~~~~~~~~l 260 (274)
T TIGR03029 233 ATRARGTLIVSRVNE-TRLHELTSLKEHL 260 (274)
T ss_pred HHhCCeEEEEEECCC-CCHHHHHHHHHHH
Confidence 344566665555432 2334444444444
No 473
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=45.56 E-value=37 Score=25.56 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=35.4
Q ss_pred ceeccchhHHhhhhhhhhc--------CCCEEEEEEeCCCHH-HHHHHH--H-HHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQE-SFNNVK--Q-WLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~-s~~~~~--~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
+.+|.|.....++...|+- ..|+++-|+|+.+-. .+++.. . |-....+.. .-=-++.||.|+...
T Consensus 150 llETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA---~AD~II~NKtDli~~ 226 (391)
T KOG2743|consen 150 LLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA---LADRIIMNKTDLVSE 226 (391)
T ss_pred EEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh---hhheeeeccccccCH
Confidence 3567776666665555543 369999999975421 111110 0 111222222 122567999999765
Q ss_pred c
Q 032243 70 K 70 (144)
Q Consensus 70 ~ 70 (144)
.
T Consensus 227 e 227 (391)
T KOG2743|consen 227 E 227 (391)
T ss_pred H
Confidence 3
No 474
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=45.46 E-value=78 Score=20.07 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=24.8
Q ss_pred HHHHHHcCC-----cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 78 KAFADEIGI-----PFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 78 ~~~~~~~~~-----~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.++.+..|+ .+..+|+-.+..+.+.++.+.+.+++
T Consensus 83 k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 83 KKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred HHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 334444553 57788888888888888888877753
No 475
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=44.92 E-value=23 Score=28.42 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=25.0
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 86 IPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 86 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.|++..||.++.|+..+++.+...+..+
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~PsP 277 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWAPKP 277 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCCC
Confidence 3889999999999999999999998644
No 476
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=44.73 E-value=55 Score=24.15 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=30.0
Q ss_pred HhhhhhhhhcCC-CEEEEEEeC-CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 11 FRTITSSYYRGA-HGIIIVYDV-TDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 11 ~~~~~~~~~~~~-d~~i~v~d~-~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
.....+..+..| -+|.+|+|. +|.+-|.++ +.......+|+.|+++...+
T Consensus 135 IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DL------leAa~kR~VpVYiLLD~~~~ 186 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDL------LEAANKRGVPVYILLDEQNL 186 (284)
T ss_pred HHHHHHHHHHHhcceeEEEeeccccHHHHHHH------HHHHHhcCCcEEEEechhcC
Confidence 444556666654 556677774 555555543 22222346999999887765
No 477
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=42.65 E-value=1.4e+02 Score=22.32 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=36.1
Q ss_pred HHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 45 NEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 45 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
..+......++|++++...... ..+....++..+++++.+...+ .+++..+...+.+
T Consensus 73 ~~~~~l~~~~~P~iIvt~~~~~-------p~~l~~~a~~~~ipll~t~~~t----~~~i~~l~~~L~~ 129 (308)
T PRK05428 73 ERLKKLFSLEPPCIIVTRGLEP-------PPELLEAAKEAGIPLLRTPLST----TRLISKLTNYLDR 129 (308)
T ss_pred HHHHHHhCCCCCEEEEECcCCC-------CHHHHHHHHHcCCcEEEeCCcH----HHHHHHHHHHHHH
Confidence 3344455557888877655442 3456788999999998877654 4455555444443
No 478
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=42.47 E-value=32 Score=21.84 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=24.0
Q ss_pred HHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCC
Q 032243 47 IDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD 95 (144)
Q Consensus 47 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 95 (144)
+......+.|++++..-.+. .+....+++..++|++.++..+
T Consensus 74 l~~l~~~~~P~iIvt~~~~~-------p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 74 LEKLFSYNPPCIIVTRGLEP-------PPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp HHHHCTTT-S-EEEETTT----------HHHHHHHHHCT--EEEESS-H
T ss_pred HHHHhCCCCCEEEEECcCCC-------CHHHHHHHHHhCCcEEEcCCcH
Confidence 34444456888887655532 5677889999999998887543
No 479
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=41.65 E-value=48 Score=22.04 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=26.9
Q ss_pred hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 032243 16 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 63 (144)
Q Consensus 16 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK 63 (144)
..-+..+|++|++...-+..---.++.++..+....-..+|++++.+-
T Consensus 63 ~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 63 LQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEec
Confidence 344678999999987654332222344444332211235788887764
No 480
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=41.03 E-value=89 Score=19.47 Aligned_cols=41 Identities=5% Similarity=-0.031 Sum_probs=25.8
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 63 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK 63 (144)
++|++++ +..+......+..++..++......+++++.|+.
T Consensus 50 ~~d~V~i--S~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 50 DVDVIGL--SSLSGGHMTLFPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred CCCEEEE--cccchhhHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 4555555 4445566677778888887764445666666664
No 481
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=39.99 E-value=48 Score=25.43 Aligned_cols=31 Identities=19% Similarity=-0.026 Sum_probs=20.3
Q ss_pred ceeccchhHHhh----hh---hhhhcCCCEEEEEEeCC
Q 032243 2 QWDTAGQERFRT----IT---SSYYRGAHGIIIVYDVT 32 (144)
Q Consensus 2 i~Dt~G~~~~~~----~~---~~~~~~~d~~i~v~d~~ 32 (144)
+.|+||.-+-.+ +. -..++++|++++|++..
T Consensus 71 ~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 71 FVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred EEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 678888643211 11 22367899999999974
No 482
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=39.54 E-value=89 Score=19.06 Aligned_cols=45 Identities=11% Similarity=-0.077 Sum_probs=25.6
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
..++++|++|..++...+++-.-+.--+ .... ++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~--A~al---gkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGY--AYAL---GKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHH--HHHT---TSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHH--HHHC---CCEEEEEEcCCcc
Confidence 4467899999999985543322222111 1111 4788888776654
No 483
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=39.32 E-value=1.1e+02 Score=20.89 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=7.6
Q ss_pred hcCCCEEEEEEeCC
Q 032243 19 YRGAHGIIIVYDVT 32 (144)
Q Consensus 19 ~~~~d~~i~v~d~~ 32 (144)
...+|.+|+|+...
T Consensus 169 ~~~aD~viiV~~~~ 182 (207)
T TIGR03018 169 ARLVGQIVLVVEEG 182 (207)
T ss_pred HHhCCEEEEEEECC
Confidence 33456666666544
No 484
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=39.05 E-value=81 Score=22.70 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=26.1
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEE-EeCCC
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV-GNKCD 65 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv-~nK~D 65 (144)
++|++|+.=|+.+..+...+..+...+... ..|++++ ||.-.
T Consensus 55 ~~D~vvitGDl~~~~~~~~~~~~~~~l~~l---~~Pv~~v~GNHD~ 97 (275)
T PRK11148 55 EFDLIVATGDLAQDHSSEAYQHFAEGIAPL---RKPCVWLPGNHDF 97 (275)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHhhc---CCcEEEeCCCCCC
Confidence 579999999998765555444444444333 3677555 66543
No 485
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=39.01 E-value=1e+02 Score=19.62 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=24.1
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~n 62 (144)
.+++.+|++|++ .-.-.+++++-..+....-.....+|++++..
T Consensus 49 ~m~~~sda~I~l--PGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 49 IMIESSDAFIAL--PGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHHESEEEEE--S-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHHhCCEEEEE--ecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 445678988887 34455666665544444333323447766553
No 486
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=38.17 E-value=1.3e+02 Score=20.63 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=46.1
Q ss_pred cCCCEEEEEEeCCC--HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEee
Q 032243 20 RGAHGIIIVYDVTD--QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 92 (144)
Q Consensus 20 ~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 92 (144)
.++|.+-++++... ...++.+...+..+..... ..|+.+++....+. .. ....+-+.+.+.|..++.+|
T Consensus 81 ~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l~-~~--~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 81 DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG-GAPLKVILETGLLT-DE--EIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCC-HH--HHHHHHHHHHHhCCCEEEcC
Confidence 47999999998753 2234556666666766654 57777777766652 11 13445566778899999999
No 487
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=37.27 E-value=1.3e+02 Score=22.04 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=40.6
Q ss_pred CCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcCCcEEEeecCCCC
Q 032243 21 GAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFADEIGIPFMETSAKDST 97 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~ 97 (144)
+++++++.+..+... +.-++ ..+..+-. -+.++=|+-|.|...-.+ .=.+.+++-...+++.+++-.+.+..
T Consensus 155 RVHcclyFi~ptGhs-LrplDieflkrLt~----vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 155 RVHCCLYFIPPTGHS-LRPLDIEFLKRLTE----VVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred eEEEEEEEeCCCCCc-cCcccHHHHHHHhh----hheeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 478999999877542 11111 11222211 255677788999743211 10122333345567777777666544
Q ss_pred CHHHHHH
Q 032243 98 NVEQAFM 104 (144)
Q Consensus 98 ~i~~l~~ 104 (144)
.-+..++
T Consensus 230 ~ed~~lN 236 (336)
T KOG1547|consen 230 LEDKTLN 236 (336)
T ss_pred hhHHHHH
Confidence 4333333
No 488
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=36.96 E-value=1.9e+02 Score=22.21 Aligned_cols=63 Identities=11% Similarity=0.022 Sum_probs=34.2
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH---HHhc---CCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYA---SDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~---~~~~p~ilv~nK~Dl~ 67 (144)
|+|||+.... +....+.-+|.+|+.+..+ ..++..+...+..+ .... ..+..+-++.|+.|..
T Consensus 239 iIDtpP~l~~--~t~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (388)
T PRK13705 239 VIDSAPNLGI--GTINVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNS 307 (388)
T ss_pred EEECCCchhH--HHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCC
Confidence 6788876433 3344555689999988664 33444443333333 2210 1122344689998853
No 489
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=36.31 E-value=94 Score=21.79 Aligned_cols=46 Identities=22% Similarity=0.157 Sum_probs=25.2
Q ss_pred hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEE-EeC
Q 032243 15 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV-GNK 63 (144)
Q Consensus 15 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv-~nK 63 (144)
+...+.+.|++|+.=|+++..........+..+... ..|+++| ||.
T Consensus 35 ~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l---~~~v~~V~GNH 81 (232)
T cd07393 35 WDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDAL---PGTKVLLKGNH 81 (232)
T ss_pred HHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhC---CCCeEEEeCCc
Confidence 344445899999999998654333333333333322 1344444 664
No 490
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=36.19 E-value=1.1e+02 Score=19.14 Aligned_cols=6 Identities=0% Similarity=0.013 Sum_probs=2.2
Q ss_pred EEEEEe
Q 032243 25 IIIVYD 30 (144)
Q Consensus 25 ~i~v~d 30 (144)
+++...
T Consensus 27 iv~f~~ 32 (122)
T TIGR01295 27 TFFIGR 32 (122)
T ss_pred EEEEEC
Confidence 333333
No 491
>PRK13660 hypothetical protein; Provisional
Probab=36.11 E-value=1.4e+02 Score=20.43 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=9.6
Q ss_pred hcCCCEEEEEEeCCCH
Q 032243 19 YRGAHGIIIVYDVTDQ 34 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~ 34 (144)
++++|++|.++|...+
T Consensus 127 v~~sd~~i~~YD~e~~ 142 (182)
T PRK13660 127 LEHTDGALLVYDEENE 142 (182)
T ss_pred HHccCeEEEEEcCCCC
Confidence 4566666666665543
No 492
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=35.97 E-value=1e+02 Score=19.81 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=39.1
Q ss_pred CcEEEEEeCCCC---CCCcccCH---HHHHHHHHHcCC-----cEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 55 VNKLLVGNKCDL---TANKVVSY---ETAKAFADEIGI-----PFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 55 ~p~ilv~nK~Dl---~~~~~~~~---~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
--++|++.|.+. ..++.... +-+.++..++++ .++.+||..++.+.+.++.+...+++.
T Consensus 55 DGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~l 124 (132)
T COG1908 55 DGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKEL 124 (132)
T ss_pred CeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHh
Confidence 357888888874 11111111 223344555554 789999999999999999998888753
No 493
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=35.97 E-value=52 Score=21.87 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=25.9
Q ss_pred hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 032243 16 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 63 (144)
Q Consensus 16 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK 63 (144)
..-+..+|++||+...-...---.++.|+..+....-..+|+.++.+-
T Consensus 60 ~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~~K~v~~~~~g 107 (171)
T TIGR03567 60 TAQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALRGKVVLPIATG 107 (171)
T ss_pred HHHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhCCCEEEEEEcC
Confidence 344668999999987554322222333443332211234677777664
No 494
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=35.74 E-value=61 Score=20.36 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=24.0
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCC
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKC 64 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 64 (144)
..+.|.++++=|+.+......+..+...+.... ..+ +++.||.-
T Consensus 17 ~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~GNHD 61 (135)
T cd07379 17 IPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--HPHKIVIAGNHD 61 (135)
T ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--CCeEEEEECCCC
Confidence 357899999999876544443333333333222 122 34556643
No 495
>PRK06756 flavodoxin; Provisional
Probab=35.74 E-value=75 Score=20.39 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=24.4
Q ss_pred hcCCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCCCCcEEEEEe
Q 032243 19 YRGAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGN 62 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~n 62 (144)
+.+.|+++|.........+ ..+..++..+........++.++++
T Consensus 47 ~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 47 LEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeC
Confidence 4567888888755431211 2345555555333334577888777
No 496
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=34.98 E-value=2.1e+02 Score=22.12 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=35.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHH-------HHHHhcCC-CCcE-EEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN-------EIDRYASD-NVNK-LLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-------~~~~~~~~-~~p~-ilv~nK~Dl 66 (144)
|+|||+...+. ....+.-+|.+|+.+..+ ..++..+...+. .+...... ...+ -++.|+.|-
T Consensus 256 iIDtpP~l~~~--t~~al~aAd~viiPv~p~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~ 326 (405)
T PRK13869 256 VIDCPPQLGFL--TLSGLCAATSMVITVHPQ-MLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP 326 (405)
T ss_pred EEECCCchhHH--HHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC
Confidence 67888876543 344566689999998664 334444444332 22222111 1223 378999985
No 497
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=34.98 E-value=2.1e+02 Score=21.90 Aligned_cols=63 Identities=16% Similarity=0.058 Sum_probs=33.6
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH--HHHHHHHHH----HHHHHHhcC-CC-CcEEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ--ESFNNVKQW----LNEIDRYAS-DN-VNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~----~~~~~~~~~-~~-~p~ilv~nK~Dl 66 (144)
|+|||+.... .....+.-+|.+|+.+..+.. .+...+... +..+..... .. ..+-++.|+.|.
T Consensus 239 iiD~pp~~~~--~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 309 (387)
T TIGR03453 239 VIDCPPQLGF--LTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEP 309 (387)
T ss_pred EEeCCccHhH--HHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECC
Confidence 6788876543 334556678999998876432 222222222 222322221 11 123568899985
No 498
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=33.66 E-value=1.1e+02 Score=18.34 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=34.2
Q ss_pred hhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 13 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 13 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
++...-++++.++++-+.....-++.++......+.....++. -++++...|
T Consensus 27 pLl~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a-~ii~G~~id 78 (95)
T PF12327_consen 27 PLLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDA-NIIWGASID 78 (95)
T ss_dssp TTSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTS-EEEEEEEE-
T ss_pred ccccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCc-eEEEEEEEC
Confidence 3444556789999999988777789999888888887776443 455666666
No 499
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=33.48 E-value=1.2e+02 Score=20.05 Aligned_cols=42 Identities=7% Similarity=0.139 Sum_probs=26.5
Q ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 20 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 20 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
..+|.+|+.+.= +-.....++..+....+.+.+++|||-|.-
T Consensus 68 ~~~D~vvly~PK----aK~e~~~lL~~l~~~L~~g~~i~vVGEnk~ 109 (155)
T PF08468_consen 68 QDFDTVVLYWPK----AKAEAQYLLANLLSHLPPGTEIFVVGENKG 109 (155)
T ss_dssp TT-SEEEEE--S----SHHHHHHHHHHHHTTS-TT-EEEEEEEGGG
T ss_pred cCCCEEEEEccC----cHHHHHHHHHHHHHhCCCCCEEEEEecCcc
Confidence 468888888843 234556677777777766788999988764
No 500
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=32.77 E-value=1.3e+02 Score=19.10 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=38.0
Q ss_pred hhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243 16 SSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM 89 (144)
Q Consensus 16 ~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (144)
...+..+|++||+...-. +..+..+.+++..-......++++.++.+=-...... ............+++.++
T Consensus 65 ~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g~~-~~~~~l~~~~~~~~~~~~ 140 (152)
T PF03358_consen 65 YDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGRRGGL-RALEQLRQILDYLGMIVV 140 (152)
T ss_dssp HHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSSSTTH-HHHHHHHHHHHHTTBEEE
T ss_pred HhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEecCCcHHH-HHHHHHHHHHHHCCCEEc
Confidence 445678999999987544 2344444444432112222357777775543322222 224555556666676433
Done!