Query 032243
Match_columns 144
No_of_seqs 116 out of 1531
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.9E-34 6.4E-39 200.1 11.8 116 1-116 65-180 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 8.4E-28 2.9E-32 164.6 13.5 114 1-114 60-173 (206)
3 2bov_A RAla, RAS-related prote 99.9 1E-26 3.4E-31 158.8 12.2 141 1-144 65-206 (206)
4 1vg8_A RAS-related protein RAB 99.9 2.8E-26 9.4E-31 156.8 9.8 114 1-115 60-178 (207)
5 3cpj_B GTP-binding protein YPT 99.9 1.9E-25 6.5E-30 154.9 10.6 114 1-114 65-178 (223)
6 2fu5_C RAS-related protein RAB 99.9 1.1E-24 3.6E-29 146.3 12.5 116 1-116 60-175 (183)
7 3tkl_A RAS-related protein RAB 99.9 4E-24 1.4E-28 144.8 14.5 117 1-117 68-184 (196)
8 2hup_A RAS-related protein RAB 99.9 2.8E-24 9.7E-29 146.9 13.4 113 1-113 81-194 (201)
9 1zbd_A Rabphilin-3A; G protein 99.9 4E-24 1.4E-28 145.8 13.8 117 1-117 60-176 (203)
10 2g6b_A RAS-related protein RAB 99.9 4E-24 1.4E-28 142.9 12.8 113 1-113 63-175 (180)
11 2gf0_A GTP-binding protein DI- 99.9 1E-24 3.5E-29 148.0 10.0 112 1-113 59-172 (199)
12 4dsu_A GTPase KRAS, isoform 2B 99.9 4.7E-24 1.6E-28 143.4 13.1 115 1-116 55-170 (189)
13 3dz8_A RAS-related protein RAB 99.9 3E-24 1E-28 145.4 12.0 114 1-114 75-188 (191)
14 2a5j_A RAS-related protein RAB 99.9 5.4E-24 1.9E-28 144.1 13.3 115 1-115 73-187 (191)
15 2ew1_A RAS-related protein RAB 99.9 4.4E-24 1.5E-28 146.2 12.8 114 1-114 78-191 (201)
16 3q72_A GTP-binding protein RAD 99.9 1E-23 3.5E-28 139.2 13.3 113 1-113 52-165 (166)
17 2bme_A RAB4A, RAS-related prot 99.9 9.7E-24 3.3E-28 141.8 12.8 117 1-117 62-178 (186)
18 2efe_B Small GTP-binding prote 99.9 1.2E-23 4E-28 140.8 13.0 111 1-111 64-174 (181)
19 4djt_A GTP-binding nuclear pro 99.9 9.4E-24 3.2E-28 145.5 12.4 119 1-119 64-182 (218)
20 2o52_A RAS-related protein RAB 99.9 1.5E-23 5.1E-28 143.1 13.3 116 1-116 77-192 (200)
21 1z0f_A RAB14, member RAS oncog 99.9 1.1E-23 3.7E-28 140.4 12.3 111 1-111 67-177 (179)
22 3kkq_A RAS-related protein M-R 99.9 1.8E-23 6.1E-28 140.3 13.4 112 1-112 69-182 (183)
23 2gf9_A RAS-related protein RAB 99.9 1.2E-23 4E-28 142.2 12.5 113 1-113 74-186 (189)
24 1z08_A RAS-related protein RAB 99.9 7.3E-24 2.5E-28 140.3 10.6 111 1-111 58-168 (170)
25 2fn4_A P23, RAS-related protei 99.9 1.7E-23 5.8E-28 139.7 12.3 114 1-114 60-174 (181)
26 1r2q_A RAS-related protein RAB 99.9 1.5E-23 5.1E-28 138.6 11.8 110 1-110 58-167 (170)
27 3t5g_A GTP-binding protein RHE 99.9 1.4E-23 4.8E-28 140.6 11.7 114 1-114 57-171 (181)
28 2oil_A CATX-8, RAS-related pro 99.9 1.6E-23 5.4E-28 141.9 12.0 115 1-115 77-191 (193)
29 2hxs_A RAB-26, RAS-related pro 99.9 8.4E-24 2.9E-28 141.1 10.5 112 1-112 59-173 (178)
30 1g16_A RAS-related protein SEC 99.9 2.6E-23 8.8E-28 137.5 12.7 112 1-113 55-166 (170)
31 2j0v_A RAC-like GTP-binding pr 99.9 2.8E-24 9.6E-29 147.6 8.3 112 1-113 60-181 (212)
32 3bc1_A RAS-related protein RAB 99.9 3.3E-23 1.1E-27 139.7 13.4 115 1-115 73-188 (195)
33 2nzj_A GTP-binding protein REM 99.9 4.8E-23 1.6E-27 136.9 14.0 116 1-116 55-173 (175)
34 3cbq_A GTP-binding protein REM 99.9 3.6E-23 1.2E-27 140.9 13.4 112 1-112 75-188 (195)
35 3tw8_B RAS-related protein RAB 99.9 2.5E-23 8.7E-28 138.9 12.3 115 1-116 61-175 (181)
36 3q85_A GTP-binding protein REM 99.9 2.2E-23 7.6E-28 138.0 11.9 113 1-113 54-168 (169)
37 2f7s_A C25KG, RAS-related prot 99.9 1.6E-23 5.4E-28 144.3 11.4 115 1-115 87-202 (217)
38 1z0j_A RAB-22, RAS-related pro 99.9 4.4E-23 1.5E-27 136.4 12.8 110 1-110 58-167 (170)
39 2il1_A RAB12; G-protein, GDP, 99.9 2.1E-23 7.3E-28 141.4 11.5 112 1-112 78-190 (192)
40 2yc2_C IFT27, small RAB-relate 99.9 3E-23 1E-27 141.5 12.2 114 1-114 76-194 (208)
41 3q3j_B RHO-related GTP-binding 99.9 1.5E-23 5.1E-28 144.7 10.6 114 1-115 78-206 (214)
42 2fg5_A RAB-22B, RAS-related pr 99.9 2.3E-23 7.8E-28 141.2 11.1 111 1-111 75-185 (192)
43 1ek0_A Protein (GTP-binding pr 99.9 3E-23 1E-27 137.1 11.4 110 1-110 55-167 (170)
44 1u8z_A RAS-related protein RAL 99.9 3.4E-23 1.2E-27 136.5 11.3 112 1-112 55-167 (168)
45 3cph_A RAS-related protein SEC 99.9 1.8E-22 6.2E-27 138.3 14.3 116 1-117 72-187 (213)
46 3t1o_A Gliding protein MGLA; G 99.9 4.2E-23 1.4E-27 139.6 11.0 112 1-115 77-195 (198)
47 3reg_A RHO-like small GTPase; 99.9 8.3E-23 2.8E-27 138.5 12.4 112 1-113 74-189 (194)
48 1z2a_A RAS-related protein RAB 99.9 4.2E-23 1.4E-27 136.3 10.6 111 1-112 57-167 (168)
49 2q3h_A RAS homolog gene family 99.9 9E-23 3.1E-27 138.9 12.4 114 1-115 71-198 (201)
50 3oes_A GTPase rhebl1; small GT 99.9 2.5E-23 8.7E-28 141.9 9.6 113 1-113 75-188 (201)
51 3c5c_A RAS-like protein 12; GD 99.9 3.3E-23 1.1E-27 140.1 10.0 110 1-111 72-185 (187)
52 2a9k_A RAS-related protein RAL 99.9 9.4E-23 3.2E-27 136.7 12.2 114 1-114 69-183 (187)
53 2p5s_A RAS and EF-hand domain 99.9 3.7E-23 1.3E-27 140.9 10.2 111 1-111 80-196 (199)
54 2y8e_A RAB-protein 6, GH09086P 99.9 3.6E-23 1.2E-27 137.9 10.0 111 1-111 66-176 (179)
55 2atx_A Small GTP binding prote 99.9 1.3E-22 4.3E-27 137.5 12.7 110 1-111 69-192 (194)
56 1z06_A RAS-related protein RAB 99.9 1.1E-22 3.8E-27 137.3 12.2 111 1-111 72-187 (189)
57 1c1y_A RAS-related protein RAP 99.9 8.8E-23 3E-27 134.6 11.2 110 1-110 54-165 (167)
58 3ihw_A Centg3; RAS, centaurin, 99.9 1.6E-22 5.5E-27 136.5 12.6 109 1-114 70-182 (184)
59 3clv_A RAB5 protein, putative; 99.9 5E-22 1.7E-26 134.7 14.8 110 1-113 96-205 (208)
60 1kao_A RAP2A; GTP-binding prot 99.9 7.6E-23 2.6E-27 134.6 10.4 111 1-111 54-165 (167)
61 2g3y_A GTP-binding protein GEM 99.9 2.3E-22 7.9E-27 138.8 13.0 114 1-114 90-205 (211)
62 1wms_A RAB-9, RAB9, RAS-relate 99.9 4.7E-22 1.6E-26 132.5 13.9 111 1-112 59-174 (177)
63 1ky3_A GTP-binding protein YPT 99.9 2.5E-22 8.4E-27 134.2 12.4 113 1-113 61-179 (182)
64 1mh1_A RAC1; GTP-binding, GTPa 99.9 9.5E-23 3.2E-27 136.7 10.2 111 1-112 56-180 (186)
65 1x3s_A RAS-related protein RAB 99.9 4.1E-22 1.4E-26 134.6 12.9 112 1-113 67-179 (195)
66 3con_A GTPase NRAS; structural 99.9 7.2E-22 2.5E-26 133.2 14.0 113 1-114 72-185 (190)
67 3bwd_D RAC-like GTP-binding pr 99.9 1.2E-22 4E-27 136.0 10.0 110 1-111 59-180 (182)
68 2atv_A RERG, RAS-like estrogen 99.9 2.3E-22 7.8E-27 136.6 11.2 113 1-114 79-193 (196)
69 2iwr_A Centaurin gamma 1; ANK 99.9 5.1E-22 1.7E-26 132.6 12.3 109 1-114 57-171 (178)
70 2j1l_A RHO-related GTP-binding 99.9 3.4E-22 1.2E-26 137.7 11.1 112 1-113 85-210 (214)
71 2erx_A GTP-binding protein DI- 99.9 7.3E-23 2.5E-27 135.5 7.4 111 1-111 54-166 (172)
72 2gco_A H9, RHO-related GTP-bin 99.9 9.3E-22 3.2E-26 134.2 13.1 110 1-111 76-199 (201)
73 4bas_A ADP-ribosylation factor 99.9 3E-22 1E-26 135.8 10.6 112 1-114 66-191 (199)
74 2ce2_X GTPase HRAS; signaling 99.9 1.2E-21 4.1E-26 128.6 12.7 110 1-111 54-164 (166)
75 1m7b_A RND3/RHOE small GTP-bin 99.9 3.3E-22 1.1E-26 134.6 10.0 110 1-111 58-182 (184)
76 1r8s_A ADP-ribosylation factor 99.9 8.4E-23 2.9E-27 134.6 6.6 110 1-112 47-162 (164)
77 2fv8_A H6, RHO-related GTP-bin 99.9 1E-21 3.6E-26 134.5 11.9 111 1-112 76-200 (207)
78 1gwn_A RHO-related GTP-binding 99.9 6.1E-22 2.1E-26 135.9 10.4 111 1-112 79-204 (205)
79 3l0i_B RAS-related protein RAB 99.9 6.2E-24 2.1E-28 144.7 -0.0 111 1-111 85-195 (199)
80 1f6b_A SAR1; gtpases, N-termin 99.9 6.1E-22 2.1E-26 135.0 9.8 107 1-109 72-196 (198)
81 4gzl_A RAS-related C3 botulinu 99.9 6.8E-22 2.3E-26 135.3 9.8 109 1-110 81-203 (204)
82 2cjw_A GTP-binding protein GEM 99.9 5.5E-21 1.9E-25 129.8 13.3 113 1-113 59-173 (192)
83 1upt_A ARL1, ADP-ribosylation 99.9 3.6E-22 1.2E-26 132.2 7.2 110 1-112 54-169 (171)
84 2h57_A ADP-ribosylation factor 99.9 5.2E-21 1.8E-25 129.2 11.6 110 1-112 70-187 (190)
85 3gj0_A GTP-binding nuclear pro 99.9 1.4E-21 4.7E-26 135.1 8.6 111 1-114 67-177 (221)
86 1zj6_A ADP-ribosylation factor 99.9 3.4E-21 1.2E-25 129.8 10.3 109 1-111 63-177 (187)
87 1m2o_B GTP-binding protein SAR 99.9 2.4E-21 8.3E-26 131.2 9.6 107 1-109 70-189 (190)
88 1fzq_A ADP-ribosylation factor 99.9 4.9E-21 1.7E-25 128.7 10.5 110 1-112 63-178 (181)
89 2b6h_A ADP-ribosylation factor 99.9 4.8E-22 1.6E-26 134.9 5.5 109 1-111 76-190 (192)
90 1ksh_A ARF-like protein 2; sma 99.9 7.7E-21 2.6E-25 127.8 11.2 110 1-112 65-180 (186)
91 2x77_A ADP-ribosylation factor 99.8 6.2E-22 2.1E-26 133.6 4.4 111 1-113 69-185 (189)
92 1zd9_A ADP-ribosylation factor 99.8 1.1E-21 3.7E-26 132.5 5.6 109 1-111 70-184 (188)
93 1cip_A Protein (guanine nucleo 99.8 8.7E-22 3E-26 145.1 5.3 114 1-114 196-346 (353)
94 3llu_A RAS-related GTP-binding 99.8 3.9E-21 1.3E-25 130.6 7.9 108 1-110 72-195 (196)
95 2h17_A ADP-ribosylation factor 99.8 7.2E-21 2.4E-25 127.7 9.1 107 1-109 68-180 (181)
96 2wkq_A NPH1-1, RAS-related C3 99.8 1.5E-20 5E-25 136.7 11.0 111 1-112 206-330 (332)
97 1moz_A ARL1, ADP-ribosylation 99.8 1.6E-20 5.5E-25 125.7 9.3 111 1-113 65-181 (183)
98 3th5_A RAS-related C3 botulinu 99.7 2.7E-22 9.2E-27 137.0 0.0 109 1-110 81-203 (204)
99 2zej_A Dardarin, leucine-rich 99.8 7E-21 2.4E-25 128.2 5.5 112 1-113 59-179 (184)
100 2f9l_A RAB11B, member RAS onco 99.8 3.7E-19 1.3E-23 121.1 13.6 114 1-114 57-170 (199)
101 1azs_C GS-alpha; complex (lyas 99.8 7E-21 2.4E-25 142.0 5.0 116 1-116 220-389 (402)
102 1zcb_A G alpha I/13; GTP-bindi 99.8 9.6E-21 3.3E-25 140.0 5.0 115 1-115 204-356 (362)
103 3r7w_B Gtpase2, GTP-binding pr 99.8 5.3E-21 1.8E-25 139.1 3.5 109 1-111 49-173 (331)
104 2xtz_A Guanine nucleotide-bind 99.8 9.8E-21 3.4E-25 139.5 4.8 115 1-115 186-348 (354)
105 3ohm_A Guanine nucleotide-bind 99.8 1.7E-20 6E-25 136.7 5.1 115 1-115 170-321 (327)
106 3lvq_E ARF-GAP with SH3 domain 99.8 1.9E-20 6.5E-25 143.4 5.3 112 1-114 369-486 (497)
107 3o47_A ADP-ribosylation factor 99.8 1.1E-19 3.8E-24 132.9 8.1 110 1-112 212-327 (329)
108 3c5h_A Glucocorticoid receptor 99.8 6.9E-20 2.4E-24 129.6 6.6 105 5-111 125-254 (255)
109 2fh5_B SR-beta, signal recogni 99.8 1E-18 3.5E-23 119.9 10.5 109 1-109 57-213 (214)
110 4fid_A G protein alpha subunit 99.8 1.8E-19 6.2E-24 131.8 5.4 112 1-112 164-328 (340)
111 3r7w_A Gtpase1, GTP-binding pr 99.8 7.4E-19 2.5E-23 127.4 8.4 109 1-110 55-179 (307)
112 2qu8_A Putative nucleolar GTP- 99.8 2.9E-18 9.8E-23 119.1 10.4 113 1-114 79-207 (228)
113 1oix_A RAS-related protein RAB 99.8 4.1E-18 1.4E-22 115.4 10.6 110 1-110 81-190 (191)
114 2wji_A Ferrous iron transport 99.8 5E-19 1.7E-23 117.1 5.4 103 1-110 53-163 (165)
115 1u0l_A Probable GTPase ENGC; p 99.8 8E-19 2.7E-23 126.9 6.6 101 1-108 66-169 (301)
116 2cxx_A Probable GTP-binding pr 99.7 3.6E-18 1.2E-22 114.7 8.3 111 1-114 47-186 (190)
117 2lkc_A Translation initiation 99.7 6.5E-18 2.2E-22 112.4 8.8 104 1-114 58-173 (178)
118 1svi_A GTP-binding protein YSX 99.7 1.3E-17 4.5E-22 112.6 7.3 106 1-111 72-194 (195)
119 3dpu_A RAB family protein; roc 99.7 9.8E-18 3.3E-22 129.6 6.8 108 1-112 101-208 (535)
120 3iev_A GTP-binding protein ERA 99.7 6.9E-17 2.4E-21 117.1 10.5 108 1-111 62-181 (308)
121 2dyk_A GTP-binding protein; GT 99.7 1.3E-17 4.4E-22 109.2 5.2 101 1-110 52-160 (161)
122 2wjg_A FEOB, ferrous iron tran 99.7 1.9E-17 6.6E-22 111.2 4.8 106 1-113 57-170 (188)
123 2gj8_A MNME, tRNA modification 99.7 4.9E-18 1.7E-22 113.2 1.2 103 1-111 55-165 (172)
124 3pqc_A Probable GTP-binding pr 99.7 1.7E-16 6E-21 106.7 8.8 105 1-111 71-193 (195)
125 3b1v_A Ferrous iron uptake tra 99.7 6.2E-17 2.1E-21 115.5 5.3 103 1-110 52-162 (272)
126 4dcu_A GTP-binding protein ENG 99.7 3.6E-16 1.2E-20 118.8 9.0 112 1-116 246-373 (456)
127 1nrj_B SR-beta, signal recogni 99.7 4.8E-17 1.6E-21 111.8 3.8 98 1-98 58-170 (218)
128 3a1s_A Iron(II) transport prot 99.6 1.2E-16 4E-21 113.3 5.4 104 1-111 55-166 (258)
129 3sjy_A Translation initiation 99.6 4.5E-16 1.5E-20 116.6 8.8 109 1-111 78-191 (403)
130 3iby_A Ferrous iron transport 99.6 3E-17 1E-21 116.2 2.3 102 1-109 51-164 (256)
131 4dhe_A Probable GTP-binding pr 99.6 6.2E-16 2.1E-20 106.5 8.4 108 1-112 82-211 (223)
132 2hjg_A GTP-binding protein ENG 99.6 8.7E-16 3E-20 116.1 8.2 110 1-114 226-351 (436)
133 3l82_B F-box only protein 4; T 99.6 2.7E-16 9.2E-21 107.3 4.4 105 4-111 108-222 (227)
134 2e87_A Hypothetical protein PH 99.6 4.5E-15 1.5E-19 109.5 10.7 109 1-112 217-336 (357)
135 3i8s_A Ferrous iron transport 99.6 1.7E-16 5.7E-21 113.3 2.4 104 1-111 53-168 (274)
136 3gee_A MNME, tRNA modification 99.6 1.8E-15 6E-20 115.4 8.0 106 1-111 284-397 (476)
137 1lnz_A SPO0B-associated GTP-bi 99.6 1.3E-15 4.6E-20 111.8 7.0 108 1-112 209-330 (342)
138 3qq5_A Small GTP-binding prote 99.6 4.9E-16 1.7E-20 116.9 4.2 104 1-112 86-196 (423)
139 3cb4_D GTP-binding protein LEP 99.6 6.2E-15 2.1E-19 115.0 10.3 105 1-111 74-181 (599)
140 2ywe_A GTP-binding protein LEP 99.6 9.3E-15 3.2E-19 114.0 10.8 105 1-111 76-183 (600)
141 1s0u_A EIF-2-gamma, translatio 99.6 7.9E-15 2.7E-19 110.0 9.9 105 1-111 84-197 (408)
142 3k53_A Ferrous iron transport 99.6 1.6E-15 5.6E-20 107.9 5.9 106 1-112 53-166 (271)
143 1wb1_A Translation elongation 99.6 1.6E-14 5.3E-19 110.5 10.3 104 1-111 76-188 (482)
144 1wf3_A GTP-binding protein; GT 99.6 2.3E-15 7.8E-20 108.8 5.1 103 1-110 58-171 (301)
145 2yv5_A YJEQ protein; hydrolase 99.6 3.5E-15 1.2E-19 107.9 5.3 98 7-107 65-164 (302)
146 1xzp_A Probable tRNA modificat 99.5 2.7E-14 9.2E-19 109.0 9.6 103 1-112 294-405 (482)
147 1kk1_A EIF2gamma; initiation o 99.5 1.9E-14 6.3E-19 108.0 8.3 105 1-111 86-199 (410)
148 1g7s_A Translation initiation 99.5 7.1E-14 2.4E-18 109.1 11.5 106 1-113 73-219 (594)
149 1mky_A Probable GTP-binding pr 99.5 2.4E-14 8.3E-19 108.2 8.6 104 1-112 52-166 (439)
150 3l2o_B F-box only protein 4; s 99.5 1.2E-14 4.2E-19 103.6 6.0 105 4-111 193-307 (312)
151 2elf_A Protein translation elo 99.5 2E-14 7E-19 106.5 7.1 107 1-113 63-181 (370)
152 3j2k_7 ERF3, eukaryotic polype 99.5 3.2E-14 1.1E-18 107.6 8.1 101 1-104 98-217 (439)
153 3tr5_A RF-3, peptide chain rel 99.5 7.4E-14 2.5E-18 107.7 10.1 64 1-68 85-148 (528)
154 3p26_A Elongation factor 1 alp 99.5 5.2E-14 1.8E-18 107.6 9.1 99 1-101 114-227 (483)
155 1zun_B Sulfate adenylate trans 99.5 2.5E-14 8.7E-19 108.0 5.9 101 1-104 107-216 (434)
156 1jny_A EF-1-alpha, elongation 99.5 3.2E-14 1.1E-18 107.5 6.1 103 1-104 87-205 (435)
157 2hjg_A GTP-binding protein ENG 99.5 2E-14 6.7E-19 108.7 4.9 102 1-111 54-164 (436)
158 3izy_P Translation initiation 99.5 5E-15 1.7E-19 114.2 1.5 107 1-111 55-167 (537)
159 2c78_A Elongation factor TU-A; 99.5 3.8E-14 1.3E-18 106.1 6.0 94 1-98 78-180 (405)
160 1d2e_A Elongation factor TU (E 99.5 1.2E-13 4.2E-18 103.2 7.7 106 1-110 69-193 (397)
161 3geh_A MNME, tRNA modification 99.5 7E-14 2.4E-18 106.3 6.1 102 1-112 275-384 (462)
162 1r5b_A Eukaryotic peptide chai 99.5 1E-14 3.5E-19 111.1 1.4 103 1-103 124-243 (467)
163 2qtf_A Protein HFLX, GTP-bindi 99.4 2E-12 6.7E-17 95.7 12.8 112 1-113 229-355 (364)
164 1ega_A Protein (GTP-binding pr 99.4 1.1E-13 3.8E-18 100.0 5.9 106 1-111 59-174 (301)
165 2ged_A SR-beta, signal recogni 99.4 2.6E-13 8.9E-18 91.2 7.2 71 1-71 94-173 (193)
166 1mky_A Probable GTP-binding pr 99.4 2.3E-12 7.8E-17 97.4 10.9 110 1-114 231-357 (439)
167 3izq_1 HBS1P, elongation facto 99.4 1.2E-13 4.1E-18 108.2 3.4 102 1-102 248-362 (611)
168 3avx_A Elongation factor TS, e 99.4 7.5E-13 2.6E-17 108.9 8.1 106 1-110 362-484 (1289)
169 1f60_A Elongation factor EEF1A 99.4 4.2E-13 1.4E-17 102.0 5.0 99 1-102 88-202 (458)
170 1zo1_I IF2, translation initia 99.4 7.2E-14 2.5E-18 107.0 0.7 101 1-108 54-163 (501)
171 4dcu_A GTP-binding protein ENG 99.4 4.8E-13 1.7E-17 101.6 5.2 102 1-111 74-184 (456)
172 3lxx_A GTPase IMAP family memb 99.3 9.1E-12 3.1E-16 86.8 10.6 110 1-112 81-214 (239)
173 2xtp_A GTPase IMAP family memb 99.3 1.1E-12 3.7E-17 92.5 5.7 111 1-113 74-209 (260)
174 2aka_B Dynamin-1; fusion prote 99.3 2.3E-13 7.8E-18 97.6 2.0 108 1-111 128-252 (299)
175 2dy1_A Elongation factor G; tr 99.3 8.4E-12 2.9E-16 98.7 9.1 63 1-67 77-139 (665)
176 2qag_A Septin-2, protein NEDD5 99.3 2E-13 6.8E-18 100.9 -0.7 107 1-113 98-234 (361)
177 3h2y_A GTPase family protein; 99.3 3.3E-11 1.1E-15 89.3 10.1 97 7-110 55-158 (368)
178 3t34_A Dynamin-related protein 99.3 9.9E-13 3.4E-17 97.0 1.8 106 1-108 139-257 (360)
179 1dar_A EF-G, elongation factor 99.2 2.9E-11 9.8E-16 96.0 9.2 64 1-68 80-143 (691)
180 2j69_A Bacterial dynamin-like 99.2 1.8E-11 6.3E-16 97.2 7.6 108 2-112 178-325 (695)
181 3lxw_A GTPase IMAP family memb 99.2 3.7E-11 1.3E-15 84.4 8.0 112 1-112 73-208 (247)
182 3t5d_A Septin-7; GTP-binding p 99.2 2.8E-12 9.5E-17 91.3 2.2 86 22-111 116-203 (274)
183 3mca_A HBS1, elongation factor 99.2 1.1E-12 3.6E-17 102.6 -0.8 97 1-100 258-371 (592)
184 2h5e_A Peptide chain release f 99.2 1.1E-10 3.6E-15 90.2 10.2 64 1-68 85-148 (529)
185 2rdo_7 EF-G, elongation factor 99.2 2E-10 6.8E-15 91.4 11.0 64 1-68 85-148 (704)
186 1udx_A The GTP-binding protein 99.2 1.1E-10 3.8E-15 87.6 9.0 110 2-114 209-327 (416)
187 1pui_A ENGB, probable GTP-bind 99.2 8.2E-11 2.8E-15 80.0 7.1 105 1-111 75-198 (210)
188 3ec1_A YQEH GTPase; atnos1, at 99.2 8.9E-11 3.1E-15 87.0 7.7 97 7-110 57-160 (369)
189 1yrb_A ATP(GTP)binding protein 99.1 1.5E-10 5.2E-15 81.4 8.3 106 2-112 113-257 (262)
190 1jwy_B Dynamin A GTPase domain 99.1 5E-11 1.7E-15 86.1 5.9 109 1-112 134-262 (315)
191 2xex_A Elongation factor G; GT 99.1 2.4E-10 8.3E-15 90.8 9.7 64 1-68 78-141 (693)
192 3p32_A Probable GTPase RV1496/ 99.1 2.8E-11 9.6E-16 89.2 3.3 99 2-112 176-284 (355)
193 1puj_A YLQF, conserved hypothe 99.0 5.1E-10 1.8E-14 80.1 7.6 100 4-113 5-107 (282)
194 2wsm_A Hydrogenase expression/ 99.0 1.8E-10 6.2E-15 79.0 4.7 99 2-112 113-214 (221)
195 3def_A T7I23.11 protein; chlor 99.0 6E-10 2E-14 78.7 4.7 71 1-72 87-169 (262)
196 1wxq_A GTP-binding protein; st 98.9 1.9E-10 6.6E-15 85.9 1.5 49 54-104 214-262 (397)
197 2qnr_A Septin-2, protein NEDD5 98.9 1.1E-10 3.6E-15 84.4 -0.3 107 1-112 79-214 (301)
198 2p67_A LAO/AO transport system 98.9 2E-09 6.7E-14 78.9 5.7 100 1-111 152-260 (341)
199 2x2e_A Dynamin-1; nitration, h 98.9 4.4E-10 1.5E-14 82.7 1.1 106 1-109 133-255 (353)
200 3vqt_A RF-3, peptide chain rel 98.8 2.4E-08 8.3E-13 77.4 10.4 63 1-67 103-165 (548)
201 2www_A Methylmalonic aciduria 98.8 1.5E-08 5.1E-13 74.5 7.9 99 2-112 171-279 (349)
202 1h65_A Chloroplast outer envel 98.8 5.9E-09 2E-13 73.9 4.9 70 1-71 90-171 (270)
203 1n0u_A EF-2, elongation factor 98.7 4.5E-09 1.5E-13 85.1 3.4 63 1-67 101-163 (842)
204 2qag_C Septin-7; cell cycle, c 98.7 2.1E-09 7.2E-14 80.8 1.4 90 18-111 133-226 (418)
205 3j25_A Tetracycline resistance 98.7 2.2E-08 7.6E-13 78.9 5.9 63 1-67 70-132 (638)
206 3cnl_A YLQF, putative uncharac 98.6 1.2E-08 4E-13 72.3 3.1 90 6-108 5-97 (262)
207 2qpt_A EH domain-containing pr 98.6 1E-08 3.5E-13 79.5 3.0 67 1-70 157-234 (550)
208 1t9h_A YLOQ, probable GTPase E 98.6 8.1E-09 2.8E-13 74.6 2.2 92 10-104 75-169 (307)
209 3zvr_A Dynamin-1; hydrolase, D 98.6 7.8E-09 2.7E-13 82.6 2.2 103 2-109 154-275 (772)
210 2qm8_A GTPase/ATPase; G protei 98.6 1.4E-07 4.9E-12 69.0 7.7 99 2-111 152-260 (337)
211 1jal_A YCHF protein; nucleotid 98.6 4.6E-07 1.6E-11 66.9 9.4 42 54-95 199-240 (363)
212 4fn5_A EF-G 1, elongation fact 98.5 1.1E-06 3.8E-11 70.1 9.9 63 1-67 88-150 (709)
213 2rcn_A Probable GTPase ENGC; Y 98.4 8E-07 2.7E-11 65.5 8.1 86 18-106 127-213 (358)
214 2dby_A GTP-binding protein; GD 98.4 5.9E-07 2E-11 66.5 7.3 51 54-104 201-254 (368)
215 2hf9_A Probable hydrogenase ni 98.4 3.2E-07 1.1E-11 62.8 4.4 58 55-112 165-224 (226)
216 2j37_W Signal recognition part 97.4 0.00012 4.1E-09 56.3 4.4 97 2-109 188-310 (504)
217 4a9a_A Ribosome-interacting GT 97.4 0.0015 5.3E-08 48.3 10.2 101 1-104 122-240 (376)
218 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00045 1.5E-08 51.5 2.2 35 1-35 89-130 (396)
219 1ni3_A YCHF GTPase, YCHF GTP-b 96.5 0.024 8.2E-07 42.2 9.7 56 54-110 224-305 (392)
220 4dzz_A Plasmid partitioning pr 96.2 0.01 3.6E-07 39.4 5.5 81 2-89 80-162 (206)
221 3dm5_A SRP54, signal recogniti 96.2 0.011 3.9E-07 44.6 6.2 87 2-100 187-279 (443)
222 1j8m_F SRP54, signal recogniti 95.8 0.027 9.3E-07 40.2 6.4 88 2-102 185-281 (297)
223 3ea0_A ATPase, para family; al 95.3 0.22 7.5E-06 33.8 9.6 83 2-92 123-205 (245)
224 3cwq_A Para family chromosome 95.0 0.21 7.1E-06 33.5 8.6 81 2-89 72-153 (209)
225 3kl4_A SRP54, signal recogniti 94.9 0.076 2.6E-06 40.0 6.7 67 21-99 211-277 (433)
226 2v3c_C SRP54, signal recogniti 93.9 0.46 1.6E-05 35.8 9.0 80 2-92 185-272 (432)
227 1wcv_1 SOJ, segregation protei 93.5 0.43 1.5E-05 32.8 7.8 63 2-67 116-182 (257)
228 3end_A Light-independent proto 93.0 1.1 3.7E-05 31.6 9.3 80 2-90 161-242 (307)
229 1g3q_A MIND ATPase, cell divis 92.0 1 3.5E-05 30.2 7.9 61 2-67 116-176 (237)
230 3ec1_A YQEH GTPase; atnos1, at 92.0 0.0046 1.6E-07 45.6 -4.3 92 2-98 216-317 (369)
231 1hyq_A MIND, cell division inh 91.6 1.1 3.7E-05 30.7 7.8 79 2-89 115-193 (263)
232 1tq4_A IIGP1, interferon-induc 91.4 1.2 4E-05 33.4 8.2 58 54-111 175-252 (413)
233 3k9g_A PF-32 protein; ssgcid, 90.3 0.88 3E-05 31.3 6.3 60 2-65 149-208 (267)
234 3kjh_A CO dehydrogenase/acetyl 89.7 0.99 3.4E-05 30.4 6.1 59 2-65 136-194 (254)
235 3q9l_A Septum site-determining 89.3 0.73 2.5E-05 31.4 5.2 62 2-66 118-185 (260)
236 2ph1_A Nucleotide-binding prot 89.2 0.7 2.4E-05 31.9 5.1 85 2-90 133-224 (262)
237 3h2y_A GTPase family protein; 88.8 0.0063 2.2E-07 44.9 -5.9 88 2-94 215-312 (368)
238 2oze_A ORF delta'; para, walke 87.2 2.7 9.3E-05 29.3 7.2 62 2-66 159-224 (298)
239 1zu4_A FTSY; GTPase, signal re 86.1 3 0.0001 30.0 6.9 69 21-101 227-295 (320)
240 1vma_A Cell division protein F 85.6 2.3 7.8E-05 30.4 6.1 69 21-101 222-290 (306)
241 3e70_C DPA, signal recognition 83.9 1.6 5.5E-05 31.5 4.7 70 21-102 241-310 (328)
242 2qag_B Septin-6, protein NEDD5 83.6 0.52 1.8E-05 35.4 2.0 64 24-94 151-218 (427)
243 1ls1_A Signal recognition part 83.4 3.3 0.00011 29.3 6.1 68 21-100 210-277 (295)
244 2xxa_A Signal recognition part 82.6 7.2 0.00025 29.3 7.9 79 2-91 188-273 (433)
245 1bif_A 6-phosphofructo-2-kinas 82.2 3.2 0.00011 31.3 6.0 49 1-50 90-148 (469)
246 2ffh_A Protein (FFH); SRP54, s 82.2 5.1 0.00017 30.1 6.9 81 2-92 185-271 (425)
247 2xj4_A MIPZ; replication, cell 81.3 1.9 6.4E-05 30.1 4.2 30 2-33 108-137 (286)
248 3pg5_A Uncharacterized protein 79.8 7.6 0.00026 28.1 7.1 39 2-43 158-196 (361)
249 1cp2_A CP2, nitrogenase iron p 79.4 12 0.00042 25.4 10.2 83 2-89 120-205 (269)
250 3szr_A Interferon-induced GTP- 78.3 2.6 8.8E-05 33.1 4.4 56 10-68 172-228 (608)
251 3sop_A Neuronal-specific septi 78.0 1.7 5.9E-05 30.3 3.1 66 20-90 110-178 (270)
252 3bfv_A CAPA1, CAPB2, membrane 77.6 2.5 8.7E-05 29.4 3.8 60 2-66 196-256 (271)
253 4a9a_A Ribosome-interacting GT 77.5 4.9 0.00017 29.6 5.5 51 54-111 249-299 (376)
254 3la6_A Tyrosine-protein kinase 76.7 8.2 0.00028 27.1 6.3 62 2-67 206-267 (286)
255 2yhs_A FTSY, cell division pro 72.9 5.4 0.00018 30.7 4.8 69 22-102 412-480 (503)
256 2afh_E Nitrogenase iron protei 72.8 20 0.0007 24.7 8.4 83 2-89 123-208 (289)
257 1rj9_A FTSY, signal recognitio 70.0 20 0.00068 25.4 7.0 70 19-100 218-287 (304)
258 1ko7_A HPR kinase/phosphatase; 68.3 7.1 0.00024 28.1 4.3 55 48-109 74-128 (314)
259 3ez9_A Para; DNA binding, wing 66.7 20 0.00068 26.2 6.6 62 2-65 252-321 (403)
260 2px0_A Flagellar biosynthesis 63.6 12 0.0004 26.5 4.7 81 2-92 187-273 (296)
261 3do6_A Formate--tetrahydrofola 56.9 25 0.00087 27.1 5.6 67 43-111 349-417 (543)
262 3gfs_A FMN-dependent NADPH-azo 55.6 22 0.00075 22.5 4.7 73 17-90 59-131 (174)
263 1byi_A Dethiobiotin synthase; 55.2 40 0.0014 21.9 8.4 61 24-90 140-201 (224)
264 3cio_A ETK, tyrosine-protein k 53.0 19 0.00065 25.3 4.3 62 2-67 218-279 (299)
265 3pzx_A Formate--tetrahydrofola 52.8 10 0.00034 29.4 2.9 69 42-112 362-430 (557)
266 3fwy_A Light-independent proto 48.3 70 0.0024 22.6 9.5 63 19-89 184-248 (314)
267 3ez2_A Plasmid partition prote 47.6 34 0.0012 24.9 5.1 30 2-33 249-278 (398)
268 1uf3_A Hypothetical protein TT 45.9 57 0.0019 21.0 5.7 43 21-66 32-75 (228)
269 3u7r_A NADPH-dependent FMN red 42.9 29 0.00099 22.7 3.7 71 15-86 61-135 (190)
270 3k1y_A Oxidoreductase; structu 42.5 23 0.00078 23.2 3.2 71 16-87 80-150 (191)
271 4hs4_A Chromate reductase; tri 41.6 29 0.001 22.8 3.6 72 15-87 67-141 (199)
272 2a5l_A Trp repressor binding p 41.3 54 0.0019 20.9 4.9 73 17-89 67-143 (200)
273 2zki_A 199AA long hypothetical 40.7 46 0.0016 21.3 4.5 72 18-89 67-142 (199)
274 2vzf_A NADH-dependent FMN redu 39.4 17 0.00056 23.7 2.1 71 17-89 65-136 (197)
275 2ark_A Flavodoxin; FMN, struct 36.4 53 0.0018 20.9 4.2 48 18-65 49-99 (188)
276 2yvt_A Hypothetical protein AQ 35.0 98 0.0033 20.5 5.8 34 3-36 12-47 (260)
277 1s2d_A Purine trans deoxyribos 34.6 64 0.0022 20.7 4.3 39 18-61 78-116 (167)
278 1se9_A Ubiquitin family; ubiqu 32.1 10 0.00034 23.4 0.1 11 134-144 114-124 (126)
279 3fkq_A NTRC-like two-domain pr 31.9 43 0.0015 24.2 3.5 44 2-48 264-307 (373)
280 3emx_A Thioredoxin; structural 31.4 83 0.0028 18.6 5.3 17 95-111 109-125 (135)
281 3lcm_A SMU.1420, putative oxid 31.3 63 0.0021 20.9 3.9 48 17-64 69-129 (196)
282 3svl_A Protein YIEF; E. coli C 30.8 65 0.0022 20.9 3.9 73 16-89 67-142 (193)
283 3hyn_A Putative signal transdu 30.6 88 0.003 20.7 4.4 50 10-63 68-118 (189)
284 1rtt_A Conserved hypothetical 30.0 29 0.001 22.3 2.1 70 17-87 68-140 (193)
285 2yxb_A Coenzyme B12-dependent 29.8 83 0.0028 19.8 4.2 79 20-113 68-146 (161)
286 4a29_A Engineered retro-aldol 29.4 1.4E+02 0.0049 20.7 6.2 70 14-85 119-202 (258)
287 3fvw_A Putative NAD(P)H-depend 28.0 50 0.0017 21.3 3.0 70 16-87 62-141 (192)
288 2nx2_A Hypothetical protein YP 27.7 1.1E+02 0.0038 19.8 4.6 16 18-33 127-142 (181)
289 3ha2_A NADPH-quinone reductase 27.4 85 0.0029 20.2 4.0 47 17-63 47-101 (177)
290 1ydg_A Trp repressor binding p 27.3 68 0.0023 20.7 3.6 74 17-90 74-151 (211)
291 1f8y_A Nucleoside 2-deoxyribos 27.1 64 0.0022 20.4 3.3 42 18-64 75-116 (157)
292 2og2_A Putative signal recogni 26.2 1.9E+02 0.0064 21.0 6.8 64 19-92 274-337 (359)
293 3ehd_A Uncharacterized conserv 26.2 88 0.003 20.0 3.8 43 17-64 65-107 (162)
294 1rli_A Trp repressor binding p 26.2 62 0.0021 20.3 3.2 73 17-89 67-151 (184)
295 1zma_A Bacterocin transport ac 25.8 81 0.0028 17.9 3.5 15 21-35 29-43 (118)
296 1sqs_A Conserved hypothetical 25.2 75 0.0026 21.2 3.6 70 18-89 76-149 (242)
297 2fz5_A Flavodoxin; alpha/beta 24.7 74 0.0025 18.7 3.2 67 19-89 44-112 (137)
298 3uc9_A Increased recombination 22.6 18 0.0006 24.9 -0.1 20 21-40 102-121 (233)
299 2q9u_A A-type flavoprotein; fl 22.2 1.4E+02 0.0046 21.6 4.7 66 18-87 304-371 (414)
300 5nul_A Flavodoxin; electron tr 21.5 1E+02 0.0035 18.2 3.4 66 18-87 42-109 (138)
301 1knx_A Probable HPR(Ser) kinas 21.0 82 0.0028 22.5 3.1 52 52-110 81-132 (312)
302 3ezx_A MMCP 1, monomethylamine 20.7 1.7E+02 0.0058 19.4 4.6 44 20-63 142-186 (215)
303 1t0i_A YLR011WP; FMN binding p 20.2 96 0.0033 19.6 3.2 70 16-89 79-148 (191)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.9e-34 Score=200.08 Aligned_cols=116 Identities=38% Similarity=0.645 Sum_probs=105.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..+++.|+++++++++|||++++.+|+.+..|+..+......++|++|||||.|+...+.++.+++..+
T Consensus 65 ~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~ 144 (216)
T 4dkx_A 65 QLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERK 144 (216)
T ss_dssp EEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhH
Confidence 58999999999999999999999999999999999999999999999887777899999999999987788999999999
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
++.++++++++||++|.||+++|+.|++.+......
T Consensus 145 a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~~ 180 (216)
T 4dkx_A 145 AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 180 (216)
T ss_dssp HHHHTCEEEEEBTTTTBSHHHHHHHHHHHC------
T ss_pred HHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999988654333
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=8.4e-28 Score=164.58 Aligned_cols=114 Identities=73% Similarity=1.124 Sum_probs=104.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 60 ~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 139 (206)
T 2bcg_Y 60 QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF 139 (206)
T ss_dssp EEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999877666799999999999977667778888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+...+++++++||++|.|++++|++|...+....
T Consensus 140 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 140 ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp HHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999987653
No 3
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=158.77 Aligned_cols=141 Identities=33% Similarity=0.536 Sum_probs=104.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||||+++|..++..++.++|++++|||+++..+|..+..|+..+..... ...|+++|+||+|+.....+..+++..
T Consensus 65 ~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 144 (206)
T 2bov_A 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN 144 (206)
T ss_dssp EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH
Confidence 4899999999999999999999999999999999999999999998877653 468999999999997666677888888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCcCC
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST 144 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 144 (144)
++...+++++++||++|.|++++|++|.+.+.............. .+......+++++||++
T Consensus 145 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~Cc~~ 206 (206)
T 2bov_A 145 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGK---KKRKSLAKRIRERCCIL 206 (206)
T ss_dssp HHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccccccccccCc---ccccchhhccccceecC
Confidence 998899999999999999999999999999976543332222221 11122234456678864
No 4
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.93 E-value=2.8e-26 Score=156.81 Aligned_cols=114 Identities=40% Similarity=0.678 Sum_probs=98.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccCHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~ 76 (144)
+||||||+++|..++..++.++|++|+|||++++.++..+..|+..+..... ...|+++|+||+|+. ...+..++
T Consensus 60 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~ 138 (207)
T 1vg8_A 60 QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKR 138 (207)
T ss_dssp EEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHH
T ss_pred EEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHH
Confidence 4899999999999999999999999999999999999999999888866542 368999999999996 34556777
Q ss_pred HHHHHH-HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 77 AKAFAD-EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 77 ~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
+..++. ..+++++++||++|.|++++|++|.+.+.....
T Consensus 139 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 139 AQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp HHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 777777 567899999999999999999999999876543
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-25 Score=154.87 Aligned_cols=114 Identities=47% Similarity=0.775 Sum_probs=100.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++|+|||++++.+|..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus 65 ~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 144 (223)
T 3cpj_B 65 QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTF 144 (223)
T ss_dssp EEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHH
T ss_pred EEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999877655789999999999976666777888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+...+++++++||++|.|++++|++|...+....
T Consensus 145 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 145 AQENQLLFTETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp HHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999987543
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.92 E-value=1.1e-24 Score=146.30 Aligned_cols=116 Identities=52% Similarity=0.919 Sum_probs=91.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++++|||++++.+|..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 60 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 139 (183)
T 2fu5_C 60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKL 139 (183)
T ss_dssp EEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHH
T ss_pred EEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999877656789999999999977667778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
++..+++++++||++|.|++++|++|...+......
T Consensus 140 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 140 ALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp HHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998765443
No 7
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=144.81 Aligned_cols=117 Identities=81% Similarity=1.233 Sum_probs=106.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|++++..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+...+...+
T Consensus 68 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 147 (196)
T 3tkl_A 68 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF 147 (196)
T ss_dssp EEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999887766799999999999987777888888899
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~ 117 (144)
+...+++++++||++|.|++++|++|.+.+.......
T Consensus 148 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 148 ADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred HHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999998765443
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=2.8e-24 Score=146.89 Aligned_cols=113 Identities=50% Similarity=0.821 Sum_probs=103.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++|+|||++++.+|+.+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 81 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 160 (201)
T 2hup_A 81 QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSL 160 (201)
T ss_dssp EEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999877656799999999999976566778888889
Q ss_pred HHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+...++ +++++||++|.|++++|++|.+.+...
T Consensus 161 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 161 AEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999998 999999999999999999999998754
No 9
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.92 E-value=4e-24 Score=145.83 Aligned_cols=117 Identities=50% Similarity=0.886 Sum_probs=105.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus 60 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 139 (203)
T 1zbd_A 60 QIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQL 139 (203)
T ss_dssp EEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHH
T ss_pred EEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999998877655789999999999977667778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~ 117 (144)
+...+++++++||++|.|++++|++|.+.+.......
T Consensus 140 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 140 ADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES 176 (203)
T ss_dssp HHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999987665443
No 10
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=4e-24 Score=142.91 Aligned_cols=113 Identities=50% Similarity=0.894 Sum_probs=95.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..++...+
T Consensus 63 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 142 (180)
T 2g6b_A 63 QMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL 142 (180)
T ss_dssp EEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999998877656799999999999987777778888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
++..+++++++||++|.|++++|++|.+.+...
T Consensus 143 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 143 AKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999988654
No 11
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1e-24 Score=148.04 Aligned_cols=112 Identities=31% Similarity=0.438 Sum_probs=97.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
+||||||+++|..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+.. ..+...++.
T Consensus 59 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~ 137 (199)
T 2gf0_A 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQ 137 (199)
T ss_dssp EEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHH
T ss_pred EEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHH
Confidence 4899999999999999999999999999999999999988888877765432 2589999999999865 455677888
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.++...+++++++||++|.|++++|++|.+.+..+
T Consensus 138 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 138 AVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp HHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred HHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 88888899999999999999999999999887543
No 12
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.92 E-value=4.7e-24 Score=143.44 Aligned_cols=115 Identities=34% Similarity=0.647 Sum_probs=99.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||||++++..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+.. ..+..+.+..
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~ 133 (189)
T 4dsu_A 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQD 133 (189)
T ss_dssp EEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHH
Confidence 4799999999999999999999999999999999999999999988877543 4789999999999864 4556788888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
++...+++++++||++|.|++++|++|.+.+......
T Consensus 134 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 170 (189)
T 4dsu_A 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170 (189)
T ss_dssp HHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999765443
No 13
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3e-24 Score=145.39 Aligned_cols=114 Identities=49% Similarity=0.905 Sum_probs=104.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++++|||++++.+|+.+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus 75 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 154 (191)
T 3dz8_A 75 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLL 154 (191)
T ss_dssp EEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999887766799999999999977667778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+...+++++++||++|.|++++|++|.+.+.+..
T Consensus 155 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 155 AEQLGFDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999987653
No 14
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.92 E-value=5.4e-24 Score=144.11 Aligned_cols=115 Identities=49% Similarity=0.812 Sum_probs=104.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 73 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 152 (191)
T 2a5j_A 73 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF 152 (191)
T ss_dssp EEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999877666799999999999976666778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
+...+++++++||++|.|++++|++|.+.+.+...
T Consensus 153 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 153 AREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp HHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 98999999999999999999999999999876543
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=4.4e-24 Score=146.24 Aligned_cols=114 Identities=47% Similarity=0.805 Sum_probs=103.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++++|||++++.+|+.+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 78 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 157 (201)
T 2ew1_A 78 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEF 157 (201)
T ss_dssp EEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999998877666789999999999976666778888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+...+++++++||++|.|++++|++|...+....
T Consensus 158 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 158 SEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999987654
No 16
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.91 E-value=1e-23 Score=139.21 Aligned_cols=113 Identities=32% Similarity=0.409 Sum_probs=87.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|+++|..++..++.++|++++|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...
T Consensus 52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 131 (166)
T 3q72_A 52 MVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA 131 (166)
T ss_dssp EEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH
T ss_pred EEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH
Confidence 489999999999999999999999999999999999999999998887653 2468999999999998777788888888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
++...+++++++||++|.|++++|++|.+.+..+
T Consensus 132 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 132 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988754
No 17
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=9.7e-24 Score=141.82 Aligned_cols=117 Identities=46% Similarity=0.771 Sum_probs=105.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus 62 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 141 (186)
T 2bme_A 62 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF 141 (186)
T ss_dssp EEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999888776656799999999999976566777888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~ 117 (144)
+...+++++++||++|.|++++|+++...+.....+.
T Consensus 142 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 178 (186)
T 2bme_A 142 AQENELMFLETSALTGENVEEAFVQCARKILNKIESG 178 (186)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 9899999999999999999999999999988655443
No 18
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.91 E-value=1.2e-23 Score=140.76 Aligned_cols=111 Identities=45% Similarity=0.744 Sum_probs=101.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 64 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~ 143 (181)
T 2efe_B 64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTY 143 (181)
T ss_dssp EEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999887656789999999999977677778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+...+++++++||++|.|++++|++|.+.+.
T Consensus 144 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 144 AQENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp HHHTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9889999999999999999999999988764
No 19
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.91 E-value=9.4e-24 Score=145.54 Aligned_cols=119 Identities=26% Similarity=0.434 Sum_probs=103.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|++++..++..++.++|++++|||+++..++..+..|+..+........|+++|+||+|+.....+.......+
T Consensus 64 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 143 (218)
T 4djt_A 64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEV 143 (218)
T ss_dssp EEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHH
T ss_pred EEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999887666689999999999977667777888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 119 (144)
+...+++++++||++|.|++++|++|.+.+.........
T Consensus 144 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~ 182 (218)
T 4djt_A 144 LKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182 (218)
T ss_dssp TTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBC
T ss_pred HHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcccccccc
Confidence 888889999999999999999999999999876555444
No 20
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=143.11 Aligned_cols=116 Identities=46% Similarity=0.777 Sum_probs=104.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++|+|||++++.++..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus 77 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 156 (200)
T 2o52_A 77 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF 156 (200)
T ss_dssp EEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999988776656799999999999976666777888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
+...+++++++||++|.|++++|++|.+.+......
T Consensus 157 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 157 AQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192 (200)
T ss_dssp HHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 988999999999999999999999999998765443
No 21
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.91 E-value=1.1e-23 Score=140.42 Aligned_cols=111 Identities=49% Similarity=0.846 Sum_probs=101.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|++++..++..++.++|++++|||+++..+++.+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 67 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 146 (179)
T 1z0f_A 67 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF 146 (179)
T ss_dssp EEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999988877666799999999999976666777888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
++..+++++++||++|.|++++|++|.+.+.
T Consensus 147 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 147 AEENGLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999998774
No 22
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.91 E-value=1.8e-23 Score=140.29 Aligned_cols=112 Identities=37% Similarity=0.578 Sum_probs=102.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..++.++|++++|||++++.+|..+..|+..+.... ....|+++|+||+|+...+.+..+++..
T Consensus 69 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~ 148 (183)
T 3kkq_A 69 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148 (183)
T ss_dssp EEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred EEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHH
Confidence 379999999999999999999999999999999999999999998886643 3478999999999998777788889999
Q ss_pred HHHHcCCcEEEeecC-CCCCHHHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAK-DSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~-~~~~i~~l~~~i~~~~~~ 112 (144)
+++..+++++++||+ ++.|++++|++|.+.+.+
T Consensus 149 ~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999 999999999999998864
No 23
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.91 E-value=1.2e-23 Score=142.16 Aligned_cols=113 Identities=48% Similarity=0.890 Sum_probs=103.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 74 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 153 (189)
T 2gf9_A 74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL 153 (189)
T ss_dssp EEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999998877655789999999999976666777888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
++..+++++++||++|.|++++|++|.+.+.+.
T Consensus 154 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 154 ADDLGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988754
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.91 E-value=7.3e-24 Score=140.31 Aligned_cols=111 Identities=38% Similarity=0.743 Sum_probs=94.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||||++++..++..++.++|++++|+|++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 58 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 137 (170)
T 1z08_A 58 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESY 137 (170)
T ss_dssp EEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999888776555689999999999976666778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
++..+++++++||++|.|++++|++|.+.+.
T Consensus 138 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 138 AESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999998875
No 25
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.91 E-value=1.7e-23 Score=139.70 Aligned_cols=114 Identities=34% Similarity=0.572 Sum_probs=101.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..++.++|++++|||++++.++..+..|+..+... .....|+++|+||+|+...+.+...++..
T Consensus 60 ~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 139 (181)
T 2fn4_A 60 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139 (181)
T ss_dssp EEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 47999999999999999999999999999999999999999999888443 34578999999999997666677888888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
++...+++++++||++|.|++++|++|.+.+....
T Consensus 140 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 88888999999999999999999999999987644
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.91 E-value=1.5e-23 Score=138.57 Aligned_cols=110 Identities=47% Similarity=0.831 Sum_probs=99.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+.....+..+++..+
T Consensus 58 ~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 137 (170)
T 1r2q_A 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSY 137 (170)
T ss_dssp EEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999998877656799999999999976566777888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+...+++++++||++|.|++++|++|.+.+
T Consensus 138 ~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 138 ADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 888999999999999999999999998765
No 27
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.91 E-value=1.4e-23 Score=140.58 Aligned_cols=114 Identities=31% Similarity=0.459 Sum_probs=101.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||||+++|..++..++.++|++++|||++++.+++.+..|+..+..... ...|+++|+||+|+...+.+..+++..
T Consensus 57 ~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 136 (181)
T 3t5g_A 57 QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA 136 (181)
T ss_dssp EEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred EEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHH
Confidence 4899999999999999999999999999999999999999999988866543 468999999999998778888899999
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+++..+++++++||++|.|++++|+.|...+....
T Consensus 137 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 137 LAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999987543
No 28
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.6e-23 Score=141.85 Aligned_cols=115 Identities=45% Similarity=0.750 Sum_probs=103.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++|+|||++++.++..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus 77 ~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 156 (193)
T 2oil_A 77 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMF 156 (193)
T ss_dssp EEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999988776656789999999999976566777888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
+...+++++++||++|.|++++|++|.+.+.....
T Consensus 157 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 157 AENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp HHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 88889999999999999999999999999876543
No 29
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.91 E-value=8.4e-24 Score=141.10 Aligned_cols=112 Identities=31% Similarity=0.499 Sum_probs=98.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVN-KLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
++|||||+++|..++..++.++|++++|||++++.+++.+..|+..+..... ...| +++|+||+|+...+.+..+++
T Consensus 59 ~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~ 138 (178)
T 2hxs_A 59 QIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKH 138 (178)
T ss_dssp EEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHH
T ss_pred EEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHH
Confidence 4899999999999999999999999999999999999999999888866432 1345 899999999976566777888
Q ss_pred HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
..+++..+++++++||++|.|++++|++|...+..
T Consensus 139 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 139 LRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 88988899999999999999999999999998754
No 30
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.91 E-value=2.6e-23 Score=137.55 Aligned_cols=112 Identities=52% Similarity=0.953 Sum_probs=101.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||++++..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+ ....+..++...+
T Consensus 55 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~ 133 (170)
T 1g16_A 55 QIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEAL 133 (170)
T ss_dssp EEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHH
T ss_pred EEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHH
Confidence 489999999999999999999999999999999999999999999988776667899999999999 4445667888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
++..+++++++||++|.|++++|++|.+.+.++
T Consensus 134 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 134 AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999998754
No 31
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.91 E-value=2.8e-24 Score=147.59 Aligned_cols=112 Identities=31% Similarity=0.586 Sum_probs=96.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV-------- 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-------- 71 (144)
+||||||+++|..++..++.++|++++|||++++.+|..+. .|+..+....+ ..|+++|+||.|+.....
T Consensus 60 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~ 138 (212)
T 2j0v_A 60 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNV 138 (212)
T ss_dssp EEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSC
T ss_pred EEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCC
Confidence 48999999999999999999999999999999999999986 78888877653 689999999999865443
Q ss_pred cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 72 VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+...++..++...+. +++++||++|.|++++|++|.+.+...
T Consensus 139 v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 139 ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 357778888888886 999999999999999999999998753
No 32
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.90 E-value=3.3e-23 Score=139.67 Aligned_cols=115 Identities=39% Similarity=0.744 Sum_probs=103.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||||+++|..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+...+.+..+++..
T Consensus 73 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 152 (195)
T 3bc1_A 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE 152 (195)
T ss_dssp EEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 4899999999999999999999999999999999999999999998877654 578999999999997656677788888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
++...+++++++||++|.|++++|++|.+.+.....
T Consensus 153 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 153 LAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp HHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 888899999999999999999999999999876543
No 33
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.90 E-value=4.8e-23 Score=136.94 Aligned_cols=116 Identities=30% Similarity=0.384 Sum_probs=94.9
Q ss_pred CceeccchhH--HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQER--FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~--~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
++|||+|+++ +..+...++..+|++++|||++++.+|..+..|+..+.... ....|+++|+||+|+.+.+.+..++.
T Consensus 55 ~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~ 134 (175)
T 2nzj_A 55 VVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEG 134 (175)
T ss_dssp EEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHH
T ss_pred EEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHH
Confidence 4899999988 66777888999999999999999999999999988887653 23689999999999987677777888
Q ss_pred HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
..++...+++++++||++|.|++++|++|.+.+......
T Consensus 135 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 135 RACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhcc
Confidence 888888899999999999999999999999998765443
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.90 E-value=3.6e-23 Score=140.90 Aligned_cols=112 Identities=26% Similarity=0.356 Sum_probs=100.0
Q ss_pred CceeccchhHHhh-hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERFRT-ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
++|||+|++++.. ++..++.++|++++|||++++.+|..+..|+..+..... ...|+++|+||+|+...+.+..+++.
T Consensus 75 ~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 154 (195)
T 3cbq_A 75 VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGR 154 (195)
T ss_dssp EEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHH
T ss_pred EEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHH
Confidence 4899999988765 788889999999999999999999999999998877653 36899999999999776777788888
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.++...+++++++||++|.|++++|+.+++.+..
T Consensus 155 ~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 155 HLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp HHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred HHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 8998889999999999999999999999998864
No 35
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=138.85 Aligned_cols=115 Identities=53% Similarity=0.845 Sum_probs=103.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||++++..++..++.++|++++|||++++.++..+..|+..+..... ..|+++|+||+|+.....+...+...+
T Consensus 61 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 139 (181)
T 3tw8_B 61 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKF 139 (181)
T ss_dssp EEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHH
Confidence 4899999999999999999999999999999999999999999998877653 689999999999977667778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
+...+++++++||++|.|++++|++|.+.+......
T Consensus 140 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 140 AGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp HHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998765443
No 36
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.90 E-value=2.2e-23 Score=137.96 Aligned_cols=113 Identities=27% Similarity=0.370 Sum_probs=96.0
Q ss_pred CceeccchhHHhh-hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERFRT-ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
++|||+|++++.. ++..++.++|++++|||++++.+|..+..|+..+..... .+.|+++|+||+|+...+.+..+++.
T Consensus 54 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 133 (169)
T 3q85_A 54 IVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGR 133 (169)
T ss_dssp EEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHH
Confidence 4899999999876 778889999999999999999999999999999877654 36899999999999766778888999
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.+++..+++++++||++|.|++++|+++.+.+..+
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 134 HLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988753
No 37
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.90 E-value=1.6e-23 Score=144.31 Aligned_cols=115 Identities=42% Similarity=0.763 Sum_probs=102.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..++.++|++|||||+++..++..+..|+..+..... ...|+++|+||+|+...+.+...++..
T Consensus 87 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~ 166 (217)
T 2f7s_A 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE 166 (217)
T ss_dssp EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHH
Confidence 4899999999999999999999999999999999999999988887765443 468999999999997666677888888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
++...+++++++||+++.|++++|++|...+.....
T Consensus 167 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 167 LADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp HHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999876543
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.90 E-value=4.4e-23 Score=136.41 Aligned_cols=110 Identities=42% Similarity=0.773 Sum_probs=100.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||||++++..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..++...+
T Consensus 58 ~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~ 137 (170)
T 1z0j_A 58 LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY 137 (170)
T ss_dssp EEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999887666789999999999976666777888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+...+++++++||++|.|++++|++|.+.+
T Consensus 138 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 138 ADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp HHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 888899999999999999999999998765
No 39
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=141.45 Aligned_cols=112 Identities=46% Similarity=0.868 Sum_probs=100.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++++|||+++..++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 78 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 157 (192)
T 2il1_A 78 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKF 157 (192)
T ss_dssp EEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999998888777666799999999999976666777788888
Q ss_pred HHHc-CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 81 ADEI-GIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 81 ~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+... +++++++||++|.|++++|++|.+.+.+
T Consensus 158 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 158 AQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp HHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 8774 7899999999999999999999998864
No 40
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.90 E-value=3e-23 Score=141.54 Aligned_cols=114 Identities=26% Similarity=0.495 Sum_probs=93.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCC-CcccCHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTA-NKVVSYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~-~~~~~~~~ 76 (144)
+||||||+++|..++..++.++|++++|||++++.+|..+..|+..+..... ...|+++|+||+|+.. .+.+..++
T Consensus 76 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~ 155 (208)
T 2yc2_C 76 FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDM 155 (208)
T ss_dssp EEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHH
T ss_pred EEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHH
Confidence 4899999999999999999999999999999999999999999999988765 5799999999999976 66777888
Q ss_pred HHHHHHHcCCcEEEeecCC-CCCHHHHHHHHHHHHHHhh
Q 032243 77 AKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 77 ~~~~~~~~~~~~~~~Sa~~-~~~i~~l~~~i~~~~~~~~ 114 (144)
+..+++..+++++++||++ |.|++++|++|...+....
T Consensus 156 ~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 156 AQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp HHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999 9999999999999886543
No 41
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.90 E-value=1.5e-23 Score=144.68 Aligned_cols=114 Identities=25% Similarity=0.520 Sum_probs=100.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||+|+++|..++..++.++|++|+|||++++.+|.. +..|+..+.... ...|+++|+||+|+...
T Consensus 78 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 156 (214)
T 3q3j_B 78 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQ 156 (214)
T ss_dssp EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHT
T ss_pred EEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhccc
Confidence 489999999999999999999999999999999999998 688999887775 36899999999999652
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCC-HHHHHHHHHHHHHHhhc
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTN-VEQAFMAMAASIKDRMA 115 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~l~~~i~~~~~~~~~ 115 (144)
+.+..+++..++...++ +++++||++|.| ++++|+.+...+.....
T Consensus 157 ~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 157 KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred ccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 55778889999999998 999999999998 99999999999875443
No 42
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.3e-23 Score=141.22 Aligned_cols=111 Identities=41% Similarity=0.793 Sum_probs=101.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus 75 ~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~ 154 (192)
T 2fg5_A 75 LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEY 154 (192)
T ss_dssp EEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999887666799999999999976566778888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
++..+++++++||++|.|++++|++|.+.+.
T Consensus 155 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 155 AESIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp HHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 9889999999999999999999999988763
No 43
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=3e-23 Score=137.07 Aligned_cols=110 Identities=41% Similarity=0.723 Sum_probs=99.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---cccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN---KVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~ 77 (144)
++|||||++++..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+... ..+..++.
T Consensus 55 ~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~ 134 (170)
T 1ek0_A 55 EIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEG 134 (170)
T ss_dssp EEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHH
T ss_pred EEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHH
Confidence 489999999999999999999999999999999999999999999988776667999999999998654 55667788
Q ss_pred HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
..++...+++++++||++|.|++++|++|.+.+
T Consensus 135 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 888888899999999999999999999998754
No 44
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.90 E-value=3.4e-23 Score=136.47 Aligned_cols=112 Identities=38% Similarity=0.599 Sum_probs=98.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||||++++..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+...+.+..+++..
T Consensus 55 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 134 (168)
T 1u8z_A 55 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN 134 (168)
T ss_dssp EEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH
Confidence 4899999999999999999999999999999999999999999988877654 468999999999997666677888888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
++...+++++++||++|.|++++|+++.+.+.+
T Consensus 135 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 135 RADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 998899999999999999999999999988753
No 45
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.8e-22 Score=138.33 Aligned_cols=116 Identities=52% Similarity=0.936 Sum_probs=103.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+ ....+...+...+
T Consensus 72 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~ 150 (213)
T 3cph_A 72 QLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEAL 150 (213)
T ss_dssp EEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHH
Confidence 489999999999999999999999999999999999999999999888776557899999999999 4455667788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccC
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~ 117 (144)
+...+++++++||++|.|++++|++|...+.......
T Consensus 151 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 187 (213)
T 3cph_A 151 AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187 (213)
T ss_dssp HHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 8888999999999999999999999999987665433
No 46
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.90 E-value=4.2e-23 Score=139.61 Aligned_cols=112 Identities=26% Similarity=0.374 Sum_probs=96.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCC------CHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVT------DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 74 (144)
+||||||+++|..++..++.++|++|+|||++ +..+|..+..|+..+.. .....|+++|+||+|+.+. +..
T Consensus 77 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~ 153 (198)
T 3t1o_A 77 HLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPV 153 (198)
T ss_dssp EEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCH
T ss_pred EEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCH
Confidence 48999999999999999999999999999999 55677777777777632 2246899999999998653 567
Q ss_pred HHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 75 ETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 75 ~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
+++..++...++ +++++||++|.|++++|++|.+.+.....
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 154 EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp HHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 888888888898 99999999999999999999999986554
No 47
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.90 E-value=8.3e-23 Score=138.47 Aligned_cols=112 Identities=26% Similarity=0.533 Sum_probs=99.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC--cccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN--KVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~ 77 (144)
+||||||+++|..++..++.++|++++|||++++.+|..+ ..|+..+.... ...|+++|+||+|+... ..+..+++
T Consensus 74 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 152 (194)
T 3reg_A 74 HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEG 152 (194)
T ss_dssp EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHH
T ss_pred EEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHH
Confidence 4899999999999999999999999999999999999997 66877777654 36899999999999643 55678888
Q ss_pred HHHHHHcCCc-EEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 78 KAFADEIGIP-FMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 78 ~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
..+++..++. ++++||++|.|++++|++|.+.+...
T Consensus 153 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 153 DDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 8999999987 99999999999999999999988643
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.89 E-value=4.2e-23 Score=136.28 Aligned_cols=111 Identities=36% Similarity=0.635 Sum_probs=100.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||++++..++..++.++|++++|||++++.+++.+..|+..+.... ...|+++|+||+|+...+.+..+++..+
T Consensus 57 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~ 135 (168)
T 1z2a_A 57 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGL 135 (168)
T ss_dssp EEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred EEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHH
Confidence 489999999999999999999999999999999999999999998887665 4689999999999976566777888889
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
++..+++++++||++|.|++++|++|.+.+.+
T Consensus 136 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 136 AKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred HHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 98899999999999999999999999988753
No 49
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.89 E-value=9e-23 Score=138.90 Aligned_cols=114 Identities=30% Similarity=0.453 Sum_probs=100.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||+|+++|..++..++.++|++++|||++++.+|..+. .|+..+..... ..|+++|+||+|+...
T Consensus 71 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~ 149 (201)
T 2q3h_A 71 QLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKC 149 (201)
T ss_dssp EEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTT
T ss_pred EEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhccc
Confidence 48999999999999999999999999999999999999987 68888877654 6899999999998642
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
..+..+++..++...+. +++++||++|.|++++|++|...+.....
T Consensus 150 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 150 KEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp TCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 45667788888888887 99999999999999999999999876543
No 50
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=141.91 Aligned_cols=113 Identities=30% Similarity=0.482 Sum_probs=101.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||||+++|..++..++.++|++++|||++++.+|..+..|+..+..... ...|+++|+||+|+...+.+...++..
T Consensus 75 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 154 (201)
T 3oes_A 75 HLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK 154 (201)
T ss_dssp EEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH
Confidence 4899999999999999999999999999999999999999999998866532 368999999999997777788888889
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
++...+++++++||++|.|++++|++|.+.+...
T Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 155 LAESWGATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998753
No 51
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=140.05 Aligned_cols=110 Identities=28% Similarity=0.424 Sum_probs=95.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
+||||+|+++|..+ ..++.++|++++|||++++.+|+.+..|+..+..... ...|+++|+||+|+...+.+..+++
T Consensus 72 ~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 150 (187)
T 3c5c_A 72 RVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG 150 (187)
T ss_dssp EEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHH
T ss_pred EEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHH
Confidence 48999999998875 6789999999999999999999999999998876632 4689999999999976667778888
Q ss_pred HHHHHHcCCcEEEeec-CCCCCHHHHHHHHHHHHH
Q 032243 78 KAFADEIGIPFMETSA-KDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 78 ~~~~~~~~~~~~~~Sa-~~~~~i~~l~~~i~~~~~ 111 (144)
..++...+++++++|| ++|.|++++|+.|.+.+.
T Consensus 151 ~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 9999999999999999 899999999999998875
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.89 E-value=9.4e-23 Score=136.73 Aligned_cols=114 Identities=38% Similarity=0.593 Sum_probs=102.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|++++..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+...+.+...++..
T Consensus 69 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 148 (187)
T 2a9k_A 69 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN 148 (187)
T ss_dssp EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence 4899999999999999999999999999999999999999999988877654 368999999999997666677888888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+++..+++++++||+++.|++++|++|.+.+...+
T Consensus 149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 149 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999987543
No 53
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=140.90 Aligned_cols=111 Identities=43% Similarity=0.737 Sum_probs=97.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC------CCcccCH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT------ANKVVSY 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~------~~~~~~~ 74 (144)
+||||||+++|..++..++.++|++|+|||++++.++..+..|+..+........|+++|+||+|+. ..+.+..
T Consensus 80 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~ 159 (199)
T 2p5s_A 80 QLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPG 159 (199)
T ss_dssp EEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCH
T ss_pred EEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCH
Confidence 4899999999999999999999999999999999999999999998877665578999999999985 3455667
Q ss_pred HHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 75 ETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.++..++...+++++++||++|.|++++|++|.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 160 HFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 7888888888999999999999999999999998874
No 54
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.89 E-value=3.6e-23 Score=137.87 Aligned_cols=111 Identities=41% Similarity=0.686 Sum_probs=100.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+...+...+
T Consensus 66 ~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 145 (179)
T 2y8e_A 66 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 145 (179)
T ss_dssp EEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999988776656789999999999976666777888888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+...+++++++||++|.|++++|++|.+.+.
T Consensus 146 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 146 AKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 8888999999999999999999999987653
No 55
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.3e-22 Score=137.50 Aligned_cols=110 Identities=33% Similarity=0.535 Sum_probs=98.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||+|+++|..++..++.++|++++|||++++.+|..+. .|+..+..... ..|+++|+||+|+...
T Consensus 69 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~ 147 (194)
T 2atx_A 69 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDM 147 (194)
T ss_dssp EEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTT
T ss_pred EEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccc
Confidence 48999999999999999999999999999999999999987 78888877643 6899999999999653
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.+..+++..++...+. +++++||++|.|++++|++|.+.+.
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 148 KEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 35667888889988887 9999999999999999999998875
No 56
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.89 E-value=1.1e-22 Score=137.30 Aligned_cols=111 Identities=42% Similarity=0.816 Sum_probs=97.4
Q ss_pred CceeccchhHHh-hhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
+||||+|+++|. .++..++.++|++++|||+++..++..+..|+..+.... ....|+++|+||+|+...+.+..+++.
T Consensus 72 ~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 151 (189)
T 1z06_A 72 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ 151 (189)
T ss_dssp EEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH
Confidence 489999999998 899999999999999999999999999999999887765 347899999999999766667788888
Q ss_pred HHHHHcCCcEEEeecCCC---CCHHHHHHHHHHHHH
Q 032243 79 AFADEIGIPFMETSAKDS---TNVEQAFMAMAASIK 111 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~---~~i~~l~~~i~~~~~ 111 (144)
.++...+++++++||+++ .|++++|++|.+.+.
T Consensus 152 ~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 152 KFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 899889999999999999 999999999988764
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.89 E-value=8.8e-23 Score=134.60 Aligned_cols=110 Identities=35% Similarity=0.612 Sum_probs=98.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..++..++.++|++++|||++++.++..+..|+..+.... ....|+++|+||+|+.+.+.+..+++..
T Consensus 54 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T 1c1y_A 54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 133 (167)
T ss_dssp EEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH
Confidence 489999999999999999999999999999999999999999988886653 3478999999999997666677788888
Q ss_pred HHHHc-CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 80 FADEI-GIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 80 ~~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+++.. +.+++++||++|.|++++|++|.+.+
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 134 LARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp HHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 88887 78999999999999999999998876
No 58
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.89 E-value=1.6e-22 Score=136.45 Aligned_cols=109 Identities=19% Similarity=0.377 Sum_probs=95.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~--~~~~~~~~~~ 77 (144)
+||||+|+++|. ++.++|++++|||++++.+|..+..|+..+..... ...|+++|+||.|+. ....+..+++
T Consensus 70 ~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~ 144 (184)
T 3ihw_A 70 LIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRA 144 (184)
T ss_dssp EEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHH
T ss_pred EEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHH
Confidence 479999999887 78889999999999999999999999999977643 468999999999983 4566778888
Q ss_pred HHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 78 KAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 78 ~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
..++...+ ++++++||++|.|++++|+++.+.+....
T Consensus 145 ~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 145 RKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 89999887 89999999999999999999999887643
No 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.89 E-value=5e-22 Score=134.68 Aligned_cols=110 Identities=34% Similarity=0.605 Sum_probs=99.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+++|..++..++.++|++++|||++++.++..+..|+..+..... .|+++|+||+| .....+..+++..+
T Consensus 96 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~~~~~~~~~~~~ 172 (208)
T 3clv_A 96 DIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNKFQVDILEVQKY 172 (208)
T ss_dssp EEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-CCSCHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cccccCCHHHHHHH
Confidence 4899999999999999999999999999999999999999999998877653 89999999999 45556778888899
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
+...+++++++||++|.|++++|++|...+...
T Consensus 173 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 173 AQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp HHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988754
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.89 E-value=7.6e-23 Score=134.64 Aligned_cols=111 Identities=38% Similarity=0.629 Sum_probs=99.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+...+.+...+...
T Consensus 54 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T 1kao_A 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA 133 (167)
T ss_dssp EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH
Confidence 4899999999999999999999999999999999999999999888866543 468999999999997666677788888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
++...+++++++||++|.|++++|++|.+.+.
T Consensus 134 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 134 LAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 88888999999999999999999999998875
No 61
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.3e-22 Score=138.78 Aligned_cols=114 Identities=25% Similarity=0.356 Sum_probs=97.2
Q ss_pred CceeccchhH-HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
++|||+|+++ +..+.+.|+..+|++++|||++++.+|+.+..|+..+.... ....|+++|+||+|+...+.+..++..
T Consensus 90 ~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~ 169 (211)
T 2g3y_A 90 ILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR 169 (211)
T ss_dssp EEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH
Confidence 3799999987 56677788899999999999999999999999988776542 246899999999999765667777777
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
.++...+++++++||++|.|++++|++|++.+....
T Consensus 170 ~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 170 ACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 788888999999999999999999999999886543
No 62
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=4.7e-22 Score=132.47 Aligned_cols=111 Identities=39% Similarity=0.696 Sum_probs=97.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccCHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~ 76 (144)
+||||||++++..++..++.++|++++|||+++..++..+..|+..+..... ...|+++|+||+|+. ...+..++
T Consensus 59 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~ 137 (177)
T 1wms_A 59 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEE 137 (177)
T ss_dssp EEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHH
T ss_pred EEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHH
Confidence 4899999999999999999999999999999999999999999988876543 468999999999996 45566778
Q ss_pred HHHHHH-HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 77 AKAFAD-EIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 77 ~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+..++. ..+++++++||++|.|++++|+++.+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 138 AQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 888887 556899999999999999999999998864
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.89 E-value=2.5e-22 Score=134.15 Aligned_cols=113 Identities=41% Similarity=0.659 Sum_probs=88.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCC-cccCHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTAN-KVVSYE 75 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~ 75 (144)
++|||||+++|..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+... ..+...
T Consensus 61 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~ 140 (182)
T 1ky3_A 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK 140 (182)
T ss_dssp EEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH
T ss_pred EEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH
Confidence 4899999999999999999999999999999999999999999988876543 46899999999998533 345677
Q ss_pred HHHHHHH-HcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 76 TAKAFAD-EIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 76 ~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
++..++. ..+++++++||++|.|++++|++|.+.+...
T Consensus 141 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 141 SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 7777877 4568999999999999999999999988754
No 64
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.89 E-value=9.5e-23 Score=136.73 Aligned_cols=111 Identities=29% Similarity=0.505 Sum_probs=97.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||||+++|..++..++.++|++++|||++++.++..+. .|+..+..... ..|+++|+||+|+.+.
T Consensus 56 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~ 134 (186)
T 1mh1_A 56 GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEK 134 (186)
T ss_dssp EEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhccc
Confidence 48999999999999999999999999999999999999987 68888876654 6899999999998653
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+.+...+...++...+. +++++||++|.|++++|++|.+.+..
T Consensus 135 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 135 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred ccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 34567778888888886 99999999999999999999998853
No 65
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=4.1e-22 Score=134.63 Aligned_cols=112 Identities=45% Similarity=0.796 Sum_probs=99.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||||+++|..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+. ...+..+++..
T Consensus 67 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~ 145 (195)
T 1x3s_A 67 AIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLK 145 (195)
T ss_dssp EEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHH
T ss_pred EEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHH
Confidence 4899999999999999999999999999999999999999999988876543 468999999999994 34566778888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
++...+++++++||+++.|++++|++|.+.+...
T Consensus 146 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 146 FARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 8988999999999999999999999999998753
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.88 E-value=7.2e-22 Score=133.23 Aligned_cols=113 Identities=36% Similarity=0.649 Sum_probs=90.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..++.++|++++|||+++..++.++..|+..+..... ...|+++|+||+|+.. ..+..+++..
T Consensus 72 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~ 150 (190)
T 3con_A 72 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHE 150 (190)
T ss_dssp EEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHH
T ss_pred EEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHH
Confidence 4899999999999999999999999999999999999999999888876653 4689999999999865 4556788888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+++..+++++++||+++.|++++|++|.+.+....
T Consensus 151 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 151 LAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987543
No 67
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.88 E-value=1.2e-22 Score=135.97 Aligned_cols=110 Identities=33% Similarity=0.590 Sum_probs=95.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV-------- 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-------- 71 (144)
+||||||+++|..++..++.++|++++|||++++.++..+. .|+..+..... ..|+++|+||+|+.+...
T Consensus 59 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~ 137 (182)
T 3bwd_D 59 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGA 137 (182)
T ss_dssp EEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--C
T ss_pred EEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccC
Confidence 48999999999999999999999999999999999999987 68888877653 689999999999865443
Q ss_pred --cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 72 --VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 72 --~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+...++..++...+. +++++||++|.|++++|++|.+.+.
T Consensus 138 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 138 VPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 366778888888886 9999999999999999999998764
No 68
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.3e-22 Score=136.60 Aligned_cols=113 Identities=35% Similarity=0.501 Sum_probs=100.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++ ..++..++.++|++++|||++++.+|+.+..|+..+..... ...|+++|+||+|+...+.+...++..
T Consensus 79 ~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~ 157 (196)
T 2atv_A 79 EILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK 157 (196)
T ss_dssp EEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH
Confidence 4899999988 77889999999999999999999999999999888876543 478999999999997666677888888
Q ss_pred HHHHcCCcEEEeecCCCC-CHHHHHHHHHHHHHHhh
Q 032243 80 FADEIGIPFMETSAKDST-NVEQAFMAMAASIKDRM 114 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~-~i~~l~~~i~~~~~~~~ 114 (144)
++...+++++++||++|. |++++|++|...+.+..
T Consensus 158 ~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 158 LATELACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp HHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 998899999999999999 99999999999987654
No 69
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.88 E-value=5.1e-22 Score=132.61 Aligned_cols=109 Identities=21% Similarity=0.366 Sum_probs=91.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCC--CCcccCHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLT--ANKVVSYE 75 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~--~~~~~~~~ 75 (144)
+||||+|+++ ..++.++|++++|||++++.+|..+..|+..+.... ....|+++|+||.|+. ..+.+..+
T Consensus 57 ~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~ 131 (178)
T 2iwr_A 57 LIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA 131 (178)
T ss_dssp EEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHH
T ss_pred EEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHH
Confidence 4899999986 457888999999999999999999998766664442 2468999999999983 34567778
Q ss_pred HHHHHHHHc-CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 76 TAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 76 ~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
++..++... +++++++||++|.|++++|+++.+.+....
T Consensus 132 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 132 RARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 888888776 689999999999999999999999887543
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=137.71 Aligned_cols=112 Identities=30% Similarity=0.601 Sum_probs=83.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK--------- 70 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------- 70 (144)
+||||+|+++|..++..++.++|++++|||++++.+|..+. .|+..+.... ...|+++|+||+|+....
T Consensus 85 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 163 (214)
T 2j1l_A 85 HIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRN 163 (214)
T ss_dssp EEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHT
T ss_pred EEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhccc
Confidence 48999999999999999999999999999999999999986 6888887665 368999999999996542
Q ss_pred ---ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 71 ---VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 71 ---~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.+..+++..+++..+. +++++||++|.|++++|++|.+.+...
T Consensus 164 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 164 GLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred ccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 4566778888888887 999999999999999999999998753
No 71
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=7.3e-23 Score=135.46 Aligned_cols=111 Identities=31% Similarity=0.451 Sum_probs=97.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
++|||||+++|..++..++.++|++++|||++++.+++.+..|+..+..... ...|+++|+||+|+.+.+.+...+..
T Consensus 54 ~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~ 133 (172)
T 2erx_A 54 QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE 133 (172)
T ss_dssp EEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH
Confidence 4899999999999999999999999999999999999998888888766532 36899999999999766667777888
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.++...+++++++||++|.|++++|++|.+.+.
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 134 ALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp HHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 888888999999999999999999999988653
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.88 E-value=9.3e-22 Score=134.21 Aligned_cols=110 Identities=29% Similarity=0.537 Sum_probs=96.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||||+++|..++..++.++|++++|||++++.++..+ ..|+..+.... ...|+++|+||+|+...
T Consensus 76 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 154 (201)
T 2gco_A 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKM 154 (201)
T ss_dssp EEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTT
T ss_pred EEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhccc
Confidence 4899999999999999999999999999999999999998 56777776654 36899999999999754
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.+..+++..++...+. +++++||++|.|++++|++|.+.+.
T Consensus 155 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 155 KQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 34667788888888887 8999999999999999999998875
No 73
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.88 E-value=3e-22 Score=135.80 Aligned_cols=112 Identities=19% Similarity=0.291 Sum_probs=91.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--------DNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ilv~nK~Dl~~~~~~ 72 (144)
+||||+|+++|..++..++.++|++|+|||+++..+|..+..|+..+..... ...|+++|+||+|+.....
T Consensus 66 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~- 144 (199)
T 4bas_A 66 TVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT- 144 (199)
T ss_dssp EEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-
T ss_pred EEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-
Confidence 4899999999999999999999999999999999999999998888755411 2589999999999965432
Q ss_pred CHHHHHHH------HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 73 SYETAKAF------ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 73 ~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
..+.... ++..+++++++||++|.|++++|++|.+.+....
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 145 -AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp -HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 2222111 1335678999999999999999999999987654
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.88 E-value=1.2e-21 Score=128.63 Aligned_cols=110 Identities=37% Similarity=0.652 Sum_probs=98.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..++..++.++|++++|||+++..++..+..|+..+..... ...|+++++||+|+.+ ......+...
T Consensus 54 ~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~ 132 (166)
T 2ce2_X 54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQD 132 (166)
T ss_dssp EEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHH
T ss_pred EEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHH
Confidence 4799999999999999999999999999999999999999999988877653 3689999999999865 4456778888
Q ss_pred HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+++..+++++++||++|.|++++|++|.+.+.
T Consensus 133 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 88889999999999999999999999998875
No 75
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.88 E-value=3.3e-22 Score=134.58 Aligned_cols=110 Identities=29% Similarity=0.583 Sum_probs=96.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||+|+++|..++..++.++|++++|||++++.+|..+ ..|+..+.... ...|+++|+||+|+...
T Consensus 58 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 136 (184)
T 1m7b_A 58 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNH 136 (184)
T ss_dssp EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred EEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhc
Confidence 4899999999999999999999999999999999999998 67888887664 36899999999999642
Q ss_pred --cccCHHHHHHHHHHcC-CcEEEeecC-CCCCHHHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIG-IPFMETSAK-DSTNVEQAFMAMAASIK 111 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~l~~~i~~~~~ 111 (144)
+.+..+++..+++..+ .+++++||+ ++.|++++|+.+.+.+.
T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 137 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp TCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 4567788888888887 699999999 68999999999998875
No 76
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=8.4e-23 Score=134.55 Aligned_cols=110 Identities=19% Similarity=0.307 Sum_probs=87.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+++|..++..++.++|++++|||++++.+|..+..|+..+... .....|+++|+||+|+.... ...+...
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~ 124 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITD 124 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHH
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHH
Confidence 48999999999999999999999999999999999999998888887553 22468999999999996532 2222222
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
... ..+++++++||++|.|++++|++|.+.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 125 KLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp HTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred HhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 111 124579999999999999999999988753
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1e-21 Score=134.51 Aligned_cols=111 Identities=29% Similarity=0.535 Sum_probs=96.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||||+++|..++..++.++|++++|||++++.++..+ ..|+..+.... ...|+++|+||+|+...
T Consensus 76 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 154 (207)
T 2fv8_A 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARM 154 (207)
T ss_dssp EEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHT
T ss_pred EEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhc
Confidence 4899999999999999999999999999999999999998 56877776654 36899999999999654
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+.+...+...++...+. +++++||++|.|++++|++|.+.+..
T Consensus 155 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 155 KQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred ccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 34566777888888887 89999999999999999999998864
No 78
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.87 E-value=6.1e-22 Score=135.87 Aligned_cols=111 Identities=29% Similarity=0.585 Sum_probs=96.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||+|+++|..++..++.++|++++|||++++.+|..+ ..|+..+.... ...|+++|+||+|+...
T Consensus 79 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 157 (205)
T 1gwn_A 79 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNH 157 (205)
T ss_dssp EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred EEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhccc
Confidence 4899999999999999999999999999999999999998 67888887664 36899999999999642
Q ss_pred --cccCHHHHHHHHHHcC-CcEEEeecC-CCCCHHHHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIG-IPFMETSAK-DSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~l~~~i~~~~~~ 112 (144)
+.+..+++..+++..+ ++++++||+ ++.|++++|+.+.+.+..
T Consensus 158 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 158 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 4566778888888887 699999999 689999999999988764
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.87 E-value=6.2e-24 Score=144.74 Aligned_cols=111 Identities=84% Similarity=1.271 Sum_probs=90.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++++|||++++.+|..+..|+..+........|+++|+||+|+.+.+.+...++..+
T Consensus 85 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~ 164 (199)
T 3l0i_B 85 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF 164 (199)
T ss_dssp EEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHH
T ss_pred EEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999777666799999999999976666666667778
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+...+++++++||++|.|++++|++|.+.+.
T Consensus 165 ~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 165 ADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp HHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8888999999999999999999999987764
No 80
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=6.1e-22 Score=135.02 Aligned_cols=107 Identities=22% Similarity=0.288 Sum_probs=86.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+++++.++..++.++|++++|+|++++.+|..+..|+..+.... ....|+++|+||+|+.. .+..+++..
T Consensus 72 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~ 149 (198)
T 1f6b_A 72 TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLRE 149 (198)
T ss_dssp EEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHH
T ss_pred EEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHH
Confidence 489999999999999999999999999999999999999999988886542 24689999999999964 345666666
Q ss_pred HHHH-----------------cCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 80 FADE-----------------IGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 80 ~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
++.. .+++++++||++|.|++++|++|.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 150 MFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp HHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred HhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 5542 23579999999999999999998754
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.87 E-value=6.8e-22 Score=135.30 Aligned_cols=109 Identities=29% Similarity=0.529 Sum_probs=95.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV-------- 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-------- 71 (144)
+||||||+++|..++..++.++|++++|||++++.++..+. .|+..+.... ...|+++|+||+|+.....
T Consensus 81 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 159 (204)
T 4gzl_A 81 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEK 159 (204)
T ss_dssp EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred EEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhcc
Confidence 38999999999999999999999999999999999999987 6888887765 4689999999999865432
Q ss_pred ----cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243 72 ----VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 72 ----~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+...++..+++..+. +++++||++|.|++++|++|.+.+
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 160 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 667778888888886 699999999999999999998754
No 82
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.86 E-value=5.5e-21 Score=129.78 Aligned_cols=113 Identities=26% Similarity=0.371 Sum_probs=94.3
Q ss_pred CceeccchhH-HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243 1 MQWDTAGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
++|||+|++. +..++..++..+|++++|||++++.+|+.+..|+..+.... ....|+++|+||.|+...+.+...+..
T Consensus 59 ~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~ 138 (192)
T 2cjw_A 59 ILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR 138 (192)
T ss_dssp EEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH
Confidence 3799999877 56677888899999999999999999999999988776643 246899999999999665666677777
Q ss_pred HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.++...+++++++||++|.|++++|++++..+...
T Consensus 139 ~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 139 AXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp HHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 77788888999999999999999999999988644
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.86 E-value=3.6e-22 Score=132.23 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=89.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..++..++.++|++++|+|++++.+|..+..|+..+.... ....|+++|+||+|+..... ..+...
T Consensus 54 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~ 131 (171)
T 1upt_A 54 QVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMAN 131 (171)
T ss_dssp EEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHH
T ss_pred EEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHH
Confidence 489999999999999999999999999999999999999888888775542 24689999999999965432 222222
Q ss_pred H-----HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 F-----ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
. +...+++++++||++|.|++++|++|.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 132 SLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp HHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 2 12234689999999999999999999998863
No 84
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.86 E-value=5.2e-21 Score=129.20 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=90.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
+||||+|++++..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+... ...++.
T Consensus 70 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~ 147 (190)
T 2h57_A 70 TVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKV 147 (190)
T ss_dssp EEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHH
T ss_pred EEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHH
Confidence 4899999999999999999999999999999999999999998888866532 36899999999999643 334555
Q ss_pred HHHHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 78 KAFAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 78 ~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
..... ..+++++++||++|.|++++|++|.+.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 148 SQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp HHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred HHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 44442 124689999999999999999999988753
No 85
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.86 E-value=1.4e-21 Score=135.06 Aligned_cols=111 Identities=32% Similarity=0.578 Sum_probs=97.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||+|+++|..++..++.++|++++|||+++..++..+..|+..+..... ..|+++|+||+|+...... .+...+
T Consensus 67 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~--~~~~~~ 143 (221)
T 3gj0_A 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVF 143 (221)
T ss_dssp EEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSSC--GGGCCH
T ss_pred EEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCcccccccc--HHHHHH
Confidence 4899999999999999999999999999999999999999999999987653 6899999999999654332 245567
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+...+++++++||++|.|++++|++|...+....
T Consensus 144 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 144 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp HHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 7788899999999999999999999999987543
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.4e-21 Score=129.82 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=86.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||+|++++..++..++.++|++++|+|++++.+|..+..|+..+.... ....|+++|+||+|+... ....+...
T Consensus 63 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~ 140 (187)
T 1zj6_A 63 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQ 140 (187)
T ss_dssp EEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHH
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHH
Confidence 489999999999999999999999999999999999999999988886642 246899999999999643 23444433
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
... ..+++++++||++|.|++++|++|.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 141 FLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp HHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 332 23468999999999999999999998874
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.86 E-value=2.4e-21 Score=131.21 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=89.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..++..++.++|++++|||++++.+|..+..|+..+.... ....|+++|+||+|+.. .+..+++.+
T Consensus 70 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~ 147 (190)
T 1m2o_B 70 TTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRS 147 (190)
T ss_dssp EEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHH
Confidence 489999999999999999999999999999999999999999888886542 24689999999999964 344555555
Q ss_pred HHHH------------cCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 80 FADE------------IGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 80 ~~~~------------~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.... .+++++++||++|.|++++|++|.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 148 ALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp HTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred HhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 4432 23579999999999999999998753
No 88
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=4.9e-21 Score=128.71 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=87.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||+++|..++..++.++|++++|||++++.+|..+..|+..+... .....|+++++||+|+..... .++...
T Consensus 63 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~ 140 (181)
T 1fzq_A 63 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAE 140 (181)
T ss_dssp EEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHH
T ss_pred EEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHH
Confidence 48999999999999999999999999999999999999998888877543 224689999999999965432 233222
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
... ..+++++++||++|.|++++|++|.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 141 GLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred HhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 211 124579999999999999999999887643
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.85 E-value=4.8e-22 Score=134.90 Aligned_cols=109 Identities=18% Similarity=0.282 Sum_probs=82.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||||+++|..++..++.++|++++|||++++.+|..+..|+..+.... ....|+++|+||+|+.+.. ...+...
T Consensus 76 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~ 153 (192)
T 2b6h_A 76 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTD 153 (192)
T ss_dssp EEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHH
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHH
Confidence 489999999999999999999999999999999999999988888875532 2468999999999996532 2222222
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
... ..+++++++||++|.|++++|++|.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 154 KLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred HhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 111 12357999999999999999999998764
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.85 E-value=7.7e-21 Score=127.76 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=90.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..++..++.++|++++|+|++++.++..+..|+..+.... ....|+++|+||+|+..... ..+...
T Consensus 65 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~ 142 (186)
T 1ksh_A 65 NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQE 142 (186)
T ss_dssp EEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHH
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHH
Confidence 489999999999999999999999999999999999999988888876542 24689999999999965432 333332
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
... ..+++++++||++|.|++++|++|.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 143 ALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 221 234689999999999999999999998864
No 91
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.84 E-value=6.2e-22 Score=133.56 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=89.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..++..++.++|++++|+|++++.++..+..|+..+.... ....|+++|+||+|+..... ..+...
T Consensus 69 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~ 146 (189)
T 2x77_A 69 EVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAE 146 (189)
T ss_dssp EEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHH
T ss_pred EEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHH
Confidence 489999999999999999999999999999999999999888888775542 24689999999999965422 222222
Q ss_pred HH-----HHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 80 FA-----DEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 80 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.. ...+++++++||++|.|++++|++|.+.+...
T Consensus 147 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 147 QLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred HhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 21 12245799999999999999999999998754
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.84 E-value=1.1e-21 Score=132.52 Aligned_cols=109 Identities=26% Similarity=0.377 Sum_probs=87.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..++.++|++++|||++++.++..+..|+..+.... ....|+++|+||+|+.... ...+...
T Consensus 70 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~ 147 (188)
T 1zd9_A 70 KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIE 147 (188)
T ss_dssp EEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHH
T ss_pred EEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHH
Confidence 489999999999999999999999999999999999999988888876542 2468999999999996532 2222222
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
... ..+++++++||++|.|++++|++|.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 148 KMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred HhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 211 12357899999999999999999988764
No 93
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.84 E-value=8.7e-22 Score=145.10 Aligned_cols=114 Identities=25% Similarity=0.274 Sum_probs=94.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 69 (144)
+|||||||++|+.+|..|+++++++|||||+++ ..++.+...|+..+.... ..++|++|++||+|+...
T Consensus 196 ~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ 275 (353)
T 1cip_A 196 KMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEE 275 (353)
T ss_dssp EEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred EEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhh
Confidence 589999999999999999999999999999998 457888888888876542 246999999999998532
Q ss_pred c---------------ccCHHHHHHHHH-----------HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 70 K---------------VVSYETAKAFAD-----------EIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 70 ~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+ .++.+++..++. ..++.+++|||+++.|+.++|+++.+.+....
T Consensus 276 ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 276 KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred hccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 2 245677777776 24568899999999999999999999987644
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=3.9e-21 Score=130.63 Aligned_cols=108 Identities=22% Similarity=0.341 Sum_probs=86.8
Q ss_pred CceeccchhHHhhhh---hhhhcCCCEEEEEEeCCCH--HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------
Q 032243 1 MQWDTAGQERFRTIT---SSYYRGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN------ 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~---~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------ 69 (144)
+||||+|+++|..+. ..++.++|++|+|||++++ .++..+..|+..+.... ...|+++|+||+|+.+.
T Consensus 72 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 150 (196)
T 3llu_A 72 QIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIET 150 (196)
T ss_dssp EEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHH
T ss_pred EEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHH
Confidence 489999999998776 8999999999999999997 67777777777765443 36899999999998642
Q ss_pred -cccCHHHHHHHHH----HcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 70 -KVVSYETAKAFAD----EIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 70 -~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+.+.......++. ..+++++++||++ .|++++|+.+++.+
T Consensus 151 ~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 151 QRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2333344556666 5677999999999 99999999998764
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.84 E-value=7.2e-21 Score=127.68 Aligned_cols=107 Identities=21% Similarity=0.309 Sum_probs=86.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|++++..++..++.++|++++|||+++..+|..+..|+..+.... ....|+++|+||+|+... ....+...
T Consensus 68 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~ 145 (181)
T 2h17_A 68 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQ 145 (181)
T ss_dssp EEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHH
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHH
Confidence 489999999999999999999999999999999999999988888876542 246899999999999643 22334333
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
... ..+++++++||++|.|++++|++|.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 146 FLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp HTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred HhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 321 234589999999999999999998753
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.84 E-value=1.5e-20 Score=136.69 Aligned_cols=111 Identities=27% Similarity=0.494 Sum_probs=97.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN---------- 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---------- 69 (144)
+||||||+++|..++..++.++|++++|||++++.+|..+. .|+..+..... ..|+++|+||+|+...
T Consensus 206 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~ 284 (332)
T 2wkq_A 206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEK 284 (332)
T ss_dssp EEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred EEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhcccc
Confidence 48999999999999999999999999999999999999987 68777776654 6899999999998543
Q ss_pred --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+.+...++..++...+. +++++||++|.|++++|+.|.+.+..
T Consensus 285 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 285 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 45667788888988887 99999999999999999999988763
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=1.6e-20 Score=125.69 Aligned_cols=111 Identities=20% Similarity=0.274 Sum_probs=86.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++|||||++++..++..++.++|++++|+|++++.++..+..|+..+.... ....|+++|+||+|+... ....+...
T Consensus 65 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~ 142 (183)
T 1moz_A 65 NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSK 142 (183)
T ss_dssp EEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHH
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHH
Confidence 489999999999999999999999999999999999999988888886543 246899999999998643 22334333
Q ss_pred HHHH-----cCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 80 FADE-----IGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 80 ~~~~-----~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.... .+++++++||++|.|++++|++|.+.+..+
T Consensus 143 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 143 ELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp HTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 3221 234799999999999999999999988653
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.73 E-value=2.7e-22 Score=137.01 Aligned_cols=109 Identities=30% Similarity=0.549 Sum_probs=92.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK--------- 70 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------- 70 (144)
+||||||+++|..++..++.++|++++|||++++.++..+. .|+..+..... ..|+++|+||+|+.+..
T Consensus 81 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~ 159 (204)
T 3th5_A 81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEK 159 (204)
Confidence 48999999999999999999999999999999999999886 67777765543 68999999999996532
Q ss_pred ---ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243 71 ---VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 71 ---~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.+...++..+++..+. +++++||++|.|++++|+.|.+.+
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 160 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 3444556667777776 899999999999999999988764
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.82 E-value=7e-21 Score=128.19 Aligned_cols=112 Identities=21% Similarity=0.367 Sum_probs=89.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC---HHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS---YET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~ 76 (144)
++|||+|+++|..++..++.++|++++|||++++ .+++.+..|+..+.... ...|+++|+||+|+.....+. ...
T Consensus 59 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 137 (184)
T 2zej_A 59 NVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKI 137 (184)
T ss_dssp EEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHH
Confidence 4899999999999999999999999999999986 58999999999887654 358999999999986433321 122
Q ss_pred HHHHHHHcCCc----EEEeecCCCC-CHHHHHHHHHHHHHHh
Q 032243 77 AKAFADEIGIP----FMETSAKDST-NVEQAFMAMAASIKDR 113 (144)
Q Consensus 77 ~~~~~~~~~~~----~~~~Sa~~~~-~i~~l~~~i~~~~~~~ 113 (144)
...+++..+++ ++++||+++. +++++++.|.+.+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 138 TKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp HHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 33444445666 9999999996 9999999998887643
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.82 E-value=3.7e-19 Score=121.11 Aligned_cols=114 Identities=47% Similarity=0.787 Sum_probs=100.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|++++..++..++.+++++++|+|+++..++..+..|+..+........|+++++||.|+.....+...++..+
T Consensus 57 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l 136 (199)
T 2f9l_A 57 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF 136 (199)
T ss_dssp EEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHH
Confidence 47999999999999999999999999999999999999888888877665545689999999999966556667778888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+...++.++++||+++.|++++|+.|.+.+....
T Consensus 137 ~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 137 AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999987654
No 101
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=7e-21 Score=142.02 Aligned_cols=116 Identities=22% Similarity=0.168 Sum_probs=92.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 69 (144)
+|||||||++|+.+|..|+++++++|||||+++ ..+|.+...|+..+.... ..++|++|++||.|+...
T Consensus 220 ~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ 299 (402)
T 1azs_C 220 HMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE 299 (402)
T ss_dssp EEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHH
T ss_pred eecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhh
Confidence 589999999999999999999999999999999 789999999999887642 347899999999998432
Q ss_pred cc---c---------------------------CHHHHHHHH-----HH--------cCCcEEEeecCCCCCHHHHHHHH
Q 032243 70 KV---V---------------------------SYETAKAFA-----DE--------IGIPFMETSAKDSTNVEQAFMAM 106 (144)
Q Consensus 70 ~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~l~~~i 106 (144)
+. + ..+++..++ .. .++.+++|||+++.||.++|+.+
T Consensus 300 ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v 379 (402)
T 1azs_C 300 KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC 379 (402)
T ss_dssp HHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred hhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHH
Confidence 21 1 123444443 21 23567899999999999999999
Q ss_pred HHHHHHhhcc
Q 032243 107 AASIKDRMAS 116 (144)
Q Consensus 107 ~~~~~~~~~~ 116 (144)
.+.+......
T Consensus 380 ~~~I~~~~l~ 389 (402)
T 1azs_C 380 RDIIQRMHLR 389 (402)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988765443
No 102
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.81 E-value=9.6e-21 Score=139.98 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=87.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 69 (144)
+|||||||++++..|..|+++++++|||||+++ ..++.+...|+..+.... ..++|++|++||.|+...
T Consensus 204 ~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ 283 (362)
T 1zcb_A 204 KMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE 283 (362)
T ss_dssp EEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred EEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhh
Confidence 589999999999999999999999999999999 678998888888886542 246899999999998532
Q ss_pred c----------------ccCHHHHHHHHH-----------HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 70 K----------------VVSYETAKAFAD-----------EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 70 ~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
+ .++.+++..++. ..++.+++|||+++.|+.++|+++.+.+.....
T Consensus 284 ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 284 KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 1 255667666652 234688999999999999999999999876544
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.81 E-value=5.3e-21 Score=139.07 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=82.1
Q ss_pred CceeccchhHHhh---hhhhhhcCCCEEEEEEeCCCH--HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------
Q 032243 1 MQWDTAGQERFRT---ITSSYYRGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN------ 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~---~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------ 69 (144)
||||||||++|.. ++..|+++++++|+|||++++ ..+..+..|+..+.... +++|+++++||+|+...
T Consensus 49 qIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~ 127 (331)
T 3r7w_B 49 AVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDA 127 (331)
T ss_dssp EEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHH
T ss_pred EEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhH
Confidence 6999999999974 468999999999999999987 33333344455444443 46999999999999654
Q ss_pred -cccCHHHHHHHHHH----cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 70 -KVVSYETAKAFADE----IGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 70 -~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.+..+++..+++. .++.+++|||++ .++.++|..|+..+.
T Consensus 128 ~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 128 QRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp HHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred HHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence 23444455555654 567999999998 699999998887653
No 104
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.81 E-value=9.8e-21 Score=139.51 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=90.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 69 (144)
+|||||||++|+.+|..|+++++++|||||++ +..+|.+...|+..+.... ..+.|++|++||.|+...
T Consensus 186 ~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ 265 (354)
T 2xtz_A 186 RLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK 265 (354)
T ss_dssp EEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred EEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhh
Confidence 58999999999999999999999999999998 6778998888888886542 246899999999998432
Q ss_pred cc--c-------------------CHHHHHHHHHH----------------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 70 KV--V-------------------SYETAKAFADE----------------IGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 70 ~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+. + +.+++..++.. ..+.+++|||+++.|++++|+++.+.+..
T Consensus 266 k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 266 KVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp HTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 11 1 13455555432 12356899999999999999999999876
Q ss_pred hhc
Q 032243 113 RMA 115 (144)
Q Consensus 113 ~~~ 115 (144)
...
T Consensus 346 ~~l 348 (354)
T 2xtz_A 346 RNL 348 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 105
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.81 E-value=1.7e-20 Score=136.66 Aligned_cols=115 Identities=22% Similarity=0.219 Sum_probs=92.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 69 (144)
++||||||++|+.+|.+|+++++++|||+|++ +..++.+...|+..+.... ..++|++|++||+|+...
T Consensus 170 ~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 170 RMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEE 249 (327)
T ss_dssp EEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHH
T ss_pred EEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhh
Confidence 58999999999999999999999999999665 5567777777777775432 246999999999998542
Q ss_pred c----------------ccCHHHHHHHHH----------HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243 70 K----------------VVSYETAKAFAD----------EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115 (144)
Q Consensus 70 ~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 115 (144)
+ ..+.+++..++. ..++.+++|||+++.|++.+|+.+.+.+.+...
T Consensus 250 ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 250 KIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 2 356677776643 234678899999999999999999999986543
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.9e-20 Score=143.41 Aligned_cols=112 Identities=21% Similarity=0.359 Sum_probs=88.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||+|+++|..++..+++++|++|+|||++++.+|..+..|+..+..... ..+|++||+||+|+.... ...+...
T Consensus 369 ~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~ 446 (497)
T 3lvq_E 369 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQE 446 (497)
T ss_dssp EEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHH
Confidence 4899999999999999999999999999999999999999988888855432 468999999999986432 2233222
Q ss_pred HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
... ..+++++++||++|.|++++|++|.+.+....
T Consensus 447 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 447 KLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp HTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC---
T ss_pred HhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 211 11246999999999999999999998875433
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=132.88 Aligned_cols=110 Identities=19% Similarity=0.287 Sum_probs=83.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
+||||||+++|..++..++.++|++|+|||++++.+|..+..|+..+.... ...+|+++|+||+|+..... ..+...
T Consensus 212 ~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~ 289 (329)
T 3o47_A 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITD 289 (329)
T ss_dssp EEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHH
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHH
Confidence 489999999999999999999999999999999999999988777765433 24689999999999965432 233222
Q ss_pred HHHH-----cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 80 FADE-----IGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 80 ~~~~-----~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.... .+++++++||++|.|++++|+.|.+.+..
T Consensus 290 ~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 290 KLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp HHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred HhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 2211 23479999999999999999999988753
No 108
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.80 E-value=6.9e-20 Score=129.59 Aligned_cols=105 Identities=22% Similarity=0.355 Sum_probs=86.0
Q ss_pred ccchhHHhhhhhhhhc---------------------CCCEEEEEEeCCCH--HHHHHHHHHHHHHHHh-cCCCCcEEEE
Q 032243 5 TAGQERFRTITSSYYR---------------------GAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRY-ASDNVNKLLV 60 (144)
Q Consensus 5 t~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~-~~~~~p~ilv 60 (144)
++|+++|..++..++. ++|++|+|||++++ .+|+.+..|+..+... .....|+++|
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV 204 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV 204 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 7888888888888887 79999999999998 8999999999888665 3346899999
Q ss_pred EeCCCCCCCcccCHHHHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 61 GNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 61 ~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+||.|+...+.+ +++..++.. .+++++++||++|.|++++|++|.+.+.
T Consensus 205 ~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 205 LTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 999998544333 455666665 4789999999999999999999988763
No 109
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.78 E-value=1e-18 Score=119.93 Aligned_cols=109 Identities=18% Similarity=0.281 Sum_probs=77.1
Q ss_pred CceeccchhHHhh-hhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCcccCH-
Q 032243 1 MQWDTAGQERFRT-ITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRY---ASDNVNKLLVGNKCDLTANKVVSY- 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~- 74 (144)
+||||||+++|.. ++..|+.++|++++|||+++.. ++..+..++..+... .....|+++|+||+|+........
T Consensus 57 ~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 136 (214)
T 2fh5_B 57 TLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLI 136 (214)
T ss_dssp EEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHH
T ss_pred EEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHH
Confidence 4899999999998 8999999999999999999853 466665555444222 234689999999999965433210
Q ss_pred -HHHHHHHH---------------------------------Hc--CCcEEEeecCCC------CCHHHHHHHHHHH
Q 032243 75 -ETAKAFAD---------------------------------EI--GIPFMETSAKDS------TNVEQAFMAMAAS 109 (144)
Q Consensus 75 -~~~~~~~~---------------------------------~~--~~~~~~~Sa~~~------~~i~~l~~~i~~~ 109 (144)
+.+..... .. +++++++||++| .|++++|++|.+.
T Consensus 137 ~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 137 QQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11111111 01 457999999999 9999999999875
No 110
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.77 E-value=1.8e-19 Score=131.81 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=90.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 69 (144)
+|||||||++|+.+|..|+++++++|||+|++ +..++.+...|+..+.... ..++|++|++||+|+...
T Consensus 164 ~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 164 HLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp EEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHH
T ss_pred ccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhh
Confidence 58999999999999999999999999999998 6678888888888876543 247899999999998431
Q ss_pred c---------------ccCHHHHHHHHHH-c--------------------------CCcEEEeecCCCCCHHHHHHHHH
Q 032243 70 K---------------VVSYETAKAFADE-I--------------------------GIPFMETSAKDSTNVEQAFMAMA 107 (144)
Q Consensus 70 ~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~~i~~l~~~i~ 107 (144)
+ ....+++..++.. . .+.++++||+++.++..+|+.+.
T Consensus 244 ki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~ 323 (340)
T 4fid_A 244 KLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAV 323 (340)
T ss_dssp HHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHH
T ss_pred hcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHH
Confidence 1 1134555444332 2 36789999999999999999999
Q ss_pred HHHHH
Q 032243 108 ASIKD 112 (144)
Q Consensus 108 ~~~~~ 112 (144)
+.+..
T Consensus 324 ~~Il~ 328 (340)
T 4fid_A 324 DVIMK 328 (340)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99886
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.77 E-value=7.4e-19 Score=127.39 Aligned_cols=109 Identities=19% Similarity=0.353 Sum_probs=87.8
Q ss_pred CceeccchhHH-----hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--Ccc
Q 032243 1 MQWDTAGQERF-----RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTA--NKV 71 (144)
Q Consensus 1 qi~Dt~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~--~~~ 71 (144)
+||||||+++| ..++..++.++|++++|||+++..+|+++..|...+.... ..+.|+++++||+|+.. .+.
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~ 134 (307)
T 3r7w_A 55 NLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE 134 (307)
T ss_dssp EEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH
T ss_pred EEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh
Confidence 48999999998 7788999999999999999999999998877655443321 23699999999999865 232
Q ss_pred ----cCHHHHHHHHHHcC---CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 72 ----VSYETAKAFADEIG---IPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 72 ----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+...++..+++.+| ++++++||++ .++.++|..++..+
T Consensus 135 ~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 135 ELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 33466777888887 6999999999 89999988877643
No 112
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.77 E-value=2.9e-18 Score=119.06 Aligned_cols=113 Identities=21% Similarity=0.200 Sum_probs=82.1
Q ss_pred Cceeccch------hHH---hhhhhhhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQ------ERF---RTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~------~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
+||||||+ ++. ...+..++..+|++++|||++++.+|. ....|+..+.... ...|+++|+||+|+...
T Consensus 79 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 79 QIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp EEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC-
T ss_pred EEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc
Confidence 48999999 431 122345678899999999999987764 2234555554432 26899999999999766
Q ss_pred cccCHH---HHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 70 KVVSYE---TAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 70 ~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
..+... ....++...+ ++++++||++|.|++++|++|.+.+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 158 DSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp -CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 665543 3455666666 79999999999999999999999987543
No 113
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.77 E-value=4.1e-18 Score=115.39 Aligned_cols=110 Identities=49% Similarity=0.832 Sum_probs=96.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||+|++++..++..++.+++++++|+|.++..+|+.+..|+..+........|+++++||.|+.....+....+..+
T Consensus 81 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l 160 (191)
T 1oix_A 81 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF 160 (191)
T ss_dssp EEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 36999999999999999999999999999999999999888888877665545689999999999965555667788888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
+...++.++++||+++.|++++|+.|.+.+
T Consensus 161 ~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 161 AEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 888899999999999999999999998764
No 114
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.76 E-value=5e-19 Score=117.13 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=79.2
Q ss_pred CceeccchhHHh------hhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFR------TITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||||+++|. .+...|+. ++|++++|+|+++... ...|+..+... ..|+++|+||.|+.....+
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~ 126 (165)
T 2wji_A 53 KVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGI 126 (165)
T ss_dssp EEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTC
T ss_pred EEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccCh
Confidence 489999998774 34566665 8999999999988543 34566665442 5899999999998533333
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.. +...+++..+++++++||++|.|++++|+++.+.+
T Consensus 127 ~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 127 EI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred hh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 22 35567777889999999999999999999998765
No 115
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.76 E-value=8e-19 Score=126.94 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=84.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
++||| +++|+.+++.|+.++|++++|||++++. +++.+..|+..+.. .+.|+++|+||+|+.+...+ ++...
T Consensus 66 ~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~ 138 (301)
T 1u0l_A 66 VIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRE 138 (301)
T ss_dssp EEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHH
T ss_pred EEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHH
Confidence 58999 9999999999999999999999999987 78888999887755 25899999999999653332 34556
Q ss_pred HHHHcC--CcEEEeecCCCCCHHHHHHHHHH
Q 032243 80 FADEIG--IPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 80 ~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
+++.++ ++++++||++|.|++++|..+..
T Consensus 139 ~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 139 LEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 666666 89999999999999999987653
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.75 E-value=3.6e-18 Score=114.70 Aligned_cols=111 Identities=23% Similarity=0.324 Sum_probs=83.4
Q ss_pred Cceeccc-----------hhHHhhhhhhhhcC-CCEEEEEEeCCCHHHHHHH-HHHHHH--------H-HHhcCCCCcEE
Q 032243 1 MQWDTAG-----------QERFRTITSSYYRG-AHGIIIVYDVTDQESFNNV-KQWLNE--------I-DRYASDNVNKL 58 (144)
Q Consensus 1 qi~Dt~G-----------~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~i 58 (144)
++||||| ++++..++..++.+ ++++++++++.+..++..+ ..|... + ........|++
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii 126 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTI 126 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceE
Confidence 4799999 88899999988887 7777666766666677766 445432 1 11222368999
Q ss_pred EEEeCCCCCCCcccCHHHHHHHHHHcCCc-------EEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 59 LVGNKCDLTANKVVSYETAKAFADEIGIP-------FMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 59 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
+|+||+|+.... ......+++.++.+ ++++||++|.|++++|++|.+.+....
T Consensus 127 lv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 127 VAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp EEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred EEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 999999986543 45666777777764 699999999999999999999887543
No 117
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.74 E-value=6.5e-18 Score=112.36 Aligned_cols=104 Identities=19% Similarity=0.192 Sum_probs=78.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 77 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 77 (144)
++|||||+++|..++..++..+|++++|+|+++ +.+++.+ ..+. ....|+++|+||+|+... ...+.
T Consensus 58 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~---~~~~p~ilv~nK~Dl~~~---~~~~~ 127 (178)
T 2lkc_A 58 TFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAK---AANVPIIVAINKMDKPEA---NPDRV 127 (178)
T ss_dssp EESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHG---GGSCCEEEEEETTTSSCS---CHHHH
T ss_pred EEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHH---hCCCCEEEEEECccCCcC---CHHHH
Confidence 489999999999999999999999999999988 3443332 2222 235899999999999643 22333
Q ss_pred HHHHHHcC---------CcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 78 KAFADEIG---------IPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 78 ~~~~~~~~---------~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
.......+ .+++++||++|.|++++|++|.+.+....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 128 MQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 33322221 47999999999999999999999887543
No 118
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.72 E-value=1.3e-17 Score=112.57 Aligned_cols=106 Identities=14% Similarity=0.216 Sum_probs=78.7
Q ss_pred Cceeccc----------hhHHhhhhhhhhcCC---CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAG----------QERFRTITSSYYRGA---HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G----------~~~~~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
++||||| +++|..++..++..+ |++++|+|+++..++.+.. ++..+.. ...|+++|+||+|+.
T Consensus 72 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 72 HFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKI 147 (195)
T ss_dssp EEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGS
T ss_pred EEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccC
Confidence 4899999 889999999998877 9999999999876665532 2222222 358999999999997
Q ss_pred CCcccCHHHHHHHHH----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 68 ANKVVSYETAKAFAD----EIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 68 ~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
....+. .....+.+ ..+.+++++||++|.|++++|++|.+.+.
T Consensus 148 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 148 PKGKWD-KHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CGGGHH-HHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ChHHHH-HHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 654432 12222222 23468999999999999999999988763
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.71 E-value=9.8e-18 Score=129.56 Aligned_cols=108 Identities=19% Similarity=0.311 Sum_probs=89.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
++|||||+++|..++..++.++|++|+|+|+++. +.+..|+..+..+.. +.|+++|+||+|+.....+..++...+
T Consensus 101 ~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~ 176 (535)
T 3dpu_A 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINER 176 (535)
T ss_dssp EEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHH
Confidence 4899999999999999999999999999999764 556678888877654 589999999999977677777778888
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+...+.+++++||++|.|++++++.|.+.+..
T Consensus 177 ~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 177 FPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 88888999999999999999999999998864
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.71 E-value=6.9e-17 Score=117.10 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=87.6
Q ss_pred Cceeccchh----------HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 032243 1 MQWDTAGQE----------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 70 (144)
Q Consensus 1 qi~Dt~G~~----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 70 (144)
.||||||+. .+...+..++.++|++++|+|+++..++.+...|+..+... ..|+++|+||+|+....
T Consensus 62 ~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~ 138 (308)
T 3iev_A 62 IFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPA 138 (308)
T ss_dssp EEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSG
T ss_pred EEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCH
Confidence 379999983 35567788899999999999999887777776667776653 58999999999997334
Q ss_pred ccCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 71 VVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 71 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.........+.+..+ .+++++||++|.|++++|+.|...+.
T Consensus 139 ~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 139 KNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 444566666777765 68999999999999999999998874
No 121
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.70 E-value=1.3e-17 Score=109.16 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=74.0
Q ss_pred CceeccchhH-------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243 1 MQWDTAGQER-------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 73 (144)
Q Consensus 1 qi~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 73 (144)
++|||||+.+ +...+..++.++|++++|+|.++..+... .++..+... ...|+++|+||+|+....
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--- 124 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE--- 124 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG---
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch---
Confidence 4899999986 56667788999999999999987533221 222222222 258999999999985432
Q ss_pred HHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243 74 YETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
++...++ ..++ +++++||++|.|++++|+++.+.+
T Consensus 125 -~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 125 -LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp -GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred -HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 2223344 5666 899999999999999999998764
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=1.9e-17 Score=111.16 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=82.3
Q ss_pred CceeccchhHHh------hhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFR------TITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||||++++. .++..++. .+|++++|+|.++ ++....|+..+.. ...|+++++||.|+.....+
T Consensus 57 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~ 130 (188)
T 2wjg_A 57 KVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGI 130 (188)
T ss_dssp EEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTC
T ss_pred EEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccc
Confidence 489999998774 45667764 5999999999875 4555667666654 35899999999998543333
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
. .....+++..+++++++||+++.|++++|+++...+...
T Consensus 131 ~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 131 E-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp C-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred h-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 2 345667778889999999999999999999999988643
No 123
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.68 E-value=4.9e-18 Score=113.25 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=75.5
Q ss_pred CceeccchhHHh----h----hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFR----T----ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~----~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||||++++. . ....++.++|++++|+|+++..++.. ..|+..+........|+++|+||+|+.....
T Consensus 55 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~- 132 (172)
T 2gj8_A 55 HIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL- 132 (172)
T ss_dssp EEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-
T ss_pred EEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-
Confidence 489999986421 1 12246889999999999998877763 4677777665545689999999999843211
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.++...+.+++++||++|.|++++|++|.+.+.
T Consensus 133 ------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 133 ------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp ------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred ------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 011123568999999999999999999988763
No 124
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.68 E-value=1.7e-16 Score=106.73 Aligned_cols=105 Identities=13% Similarity=0.229 Sum_probs=78.1
Q ss_pred Cceeccc----------hhHHhhhhhhhhcCC---CEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 1 MQWDTAG----------QERFRTITSSYYRGA---HGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 1 qi~Dt~G----------~~~~~~~~~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
++||||| ++.|..++..++..+ |++++|+|.++..+ ...+..|+... ..|+++|+||+|
T Consensus 71 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~D 144 (195)
T 3pqc_A 71 YFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMD 144 (195)
T ss_dssp EEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGG
T ss_pred EEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChh
Confidence 3799999 888999998888776 99999999887533 23333343332 589999999999
Q ss_pred CCCCccc--CHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 66 LTANKVV--SYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 66 l~~~~~~--~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+.+.... ..+++..++...+ ++++++||++|.|++++|++|.+.+.
T Consensus 145 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 145 KVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp GSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 8654322 1233444454433 69999999999999999999998874
No 125
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.66 E-value=6.2e-17 Score=115.53 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=79.4
Q ss_pred CceeccchhHHh------hhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFR------TITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||||+.++. .+++.|+. ++|++++|+|+++..+. ..|...+.. ...|+++++||+|+.....+
T Consensus 52 ~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~ 125 (272)
T 3b1v_A 52 EIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGK 125 (272)
T ss_dssp EEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTC
T ss_pred EEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCc
Confidence 489999998775 45677775 69999999999875443 345444443 25899999999998543333
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
. .+...+.+.++++++++||++|.|++++|+++...+
T Consensus 126 ~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 126 K-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp C-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred H-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 2 345667778899999999999999999999998764
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.65 E-value=3.6e-16 Score=118.77 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=84.4
Q ss_pred Cceeccc----------hhHHhhhhhh-hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAG----------QERFRTITSS-YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G----------~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
+|||||| +++|..++.. +++++|++++|+|+++.-... ...|+..+.. ...|+++|+||+|+.+.
T Consensus 246 ~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 246 VIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp EETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSCC
T ss_pred EEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEEChhcCCC
Confidence 4899999 7888877664 789999999999998743322 2334444433 25899999999999766
Q ss_pred cccCHHHHHHHHHHc-----CCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243 70 KVVSYETAKAFADEI-----GIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116 (144)
Q Consensus 70 ~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 116 (144)
.....++....++.. +.+++++||++|.|++++|+.+.+.+......
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 322 DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp CSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 555556655555544 46999999999999999999999988765443
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=4.8e-17 Score=111.81 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=71.7
Q ss_pred CceeccchhHHhhhhhhhhcC----CCEEEEEEeCC-CHHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQERFRTITSSYYRG----AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
++|||||+++++..+..++.+ +|++++|+|++ ++.+|..+..|+..+... .....|+++|+||+|+.....
T Consensus 58 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 58 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 479999999999999999877 89999999999 888888888888777554 234799999999999976554
Q ss_pred cC------HHHHHHHHHHcCCcEEEeecCCCCC
Q 032243 72 VS------YETAKAFADEIGIPFMETSAKDSTN 98 (144)
Q Consensus 72 ~~------~~~~~~~~~~~~~~~~~~Sa~~~~~ 98 (144)
+. ..++..++...+.+++++||++|.+
T Consensus 138 ~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 138 PSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 32 2334555555667889999998754
No 128
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.65 E-value=1.2e-16 Score=113.28 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=80.0
Q ss_pred CceeccchhHHhh------hhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRT------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
+||||||+.++.. +.+.|+ .++|++++|+|+++..+. ..|+..+... ..|+++++||+|+...+.+
T Consensus 55 ~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 55 NLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAKKTGM 128 (258)
T ss_dssp EEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHHHTTC
T ss_pred EEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCCccch
Confidence 4899999987764 336666 589999999999986543 2344444432 5899999999998543333
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
. .+...+.+.++++++++||++|.|++++|+.+...+.
T Consensus 129 ~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 129 K-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp C-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 2 2356678888999999999999999999999988765
No 129
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.65 E-value=4.5e-16 Score=116.56 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=82.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~ 78 (144)
+||||||+++|...+..++..+|++++|+|+++..++.....++..+.... ..|+++++||+|+.+..... .++..
T Consensus 78 ~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~ 155 (403)
T 3sjy_A 78 SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIK 155 (403)
T ss_dssp EEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHH
Confidence 389999999999999999999999999999998765666666666555443 25899999999986533211 11222
Q ss_pred HHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 79 AFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 79 ~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.+.... +++++++||++|.|++++++.|...+.
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 222221 468999999999999999999987653
No 130
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.65 E-value=3e-17 Score=116.20 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=76.7
Q ss_pred CceeccchhHHhh----------hhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRT----------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~----------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+..+.. +++.|+ .++|++++|+|+++..+...+.. .+.. ...|+++++||+|+..
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~---~l~~---~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS---QLFE---LGKPVVVALNMMDIAE 124 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHH---HHTT---SCSCEEEEEECHHHHH
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHH---HHHH---cCCCEEEEEEChhcCC
Confidence 4899999976653 567777 89999999999998655443332 2222 2589999999999854
Q ss_pred CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
..... .....+.+.++++++++||++|.|++++|+.|.+.
T Consensus 125 ~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 125 HRGIS-IDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HTTCE-ECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred cCCcH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33221 22345777789999999999999999999999876
No 131
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.64 E-value=6.2e-16 Score=106.48 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=76.1
Q ss_pred Cceeccc----------hhHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAG----------QERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+|||||| ++.|..++..|+.. +|++++|+|.++..+.. ...++..+.. ...|+++|+||+|+.
T Consensus 82 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 82 HLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKL 157 (223)
T ss_dssp EEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGS
T ss_pred EEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccC
Confidence 4899999 67788888888876 78899999998743322 2234444433 258999999999986
Q ss_pred CCcccC--HHHHHHHHHH-------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 68 ANKVVS--YETAKAFADE-------IGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 68 ~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+..... .......... .+.+++++||++|.|++++|++|.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 158 TRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 543321 1112222222 34689999999999999999999998853
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.62 E-value=8.7e-16 Score=116.07 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=82.0
Q ss_pred Cceeccch----------hHHhhhhh-hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQ----------ERFRTITS-SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~----------~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
+||||||+ ++|..++. .+++++|++++|+|+++..++.+. .|+..+.. ...|+++++||+|+.+.
T Consensus 226 ~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 226 VIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp EETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCC
T ss_pred EEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCc
Confidence 48999998 66665544 478899999999999987777764 45555543 25899999999999765
Q ss_pred cccCHHHHHH-HHHH----cCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 70 KVVSYETAKA-FADE----IGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 70 ~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
.....++... +.+. .+.+++++||++|.|++++|+.+...+....
T Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 302 DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp CTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 4443333322 2222 2469999999999999999999998887543
No 133
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=107.34 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=68.1
Q ss_pred eccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH---HHhc--CCCCcEEEEEeCC-CCCCCcccCHHHH
Q 032243 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYA--SDNVNKLLVGNKC-DLTANKVVSYETA 77 (144)
Q Consensus 4 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~--~~~~p~ilv~nK~-Dl~~~~~~~~~~~ 77 (144)
|.+||.+++++|++||+++|++|||+|++|...++ ....+..+ .... ....|++|++||. |+. ...+..++
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI 184 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYL 184 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHH
Confidence 45799999999999999999999999999876544 33333222 2221 1468999999995 663 23344444
Q ss_pred HHHHH----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 78 KAFAD----EIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 78 ~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
..... ...|.+..|||.+|+|+.+.++||...+.
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 33221 13468899999999999999999987764
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.61 E-value=4.5e-15 Score=109.52 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=83.6
Q ss_pred CceeccchhHHh---------hhhhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQERFR---------TITSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
++|||+|...+. .....+...+|++++|+|+++.. ++.....|+..+..... ..|+++|+||.|+...
T Consensus 217 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 217 QIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp EEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred EEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 489999985421 12234456799999999998876 67777788888766543 5899999999998643
Q ss_pred cccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 70 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.. ..+...++...+++++++||++|.|+++++++|.+.+..
T Consensus 296 ~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 296 EN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 33 234555666778899999999999999999999998854
No 135
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.60 E-value=1.7e-16 Score=113.33 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=76.1
Q ss_pred CceeccchhHHh----------hhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFR----------TITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~----------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
.||||||+.++. ..++.|+ .++|++++|+|+++..+...+ ...+... ..|+++|+||+|+..
T Consensus 53 ~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 53 TLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLDIAE 126 (274)
T ss_dssp EEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHHHHH
T ss_pred EEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECccchh
Confidence 389999987765 2344444 799999999999886544433 3333333 589999999999853
Q ss_pred CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.... ......+.+.++++++++||++|.|++++++.|...+.
T Consensus 127 ~~~~-~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 127 KQNI-RIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp HTTE-EECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred hhhH-HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3222 12245577788999999999999999999998877653
No 136
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.60 E-value=1.8e-15 Score=115.43 Aligned_cols=106 Identities=21% Similarity=0.145 Sum_probs=68.4
Q ss_pred CceeccchhHHhhhh--------hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRTIT--------SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
+||||||+.++...+ ..++.++|++++|+|++++.++..+..+...+.... ..|+++|+||+|+.+....
T Consensus 284 ~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 284 RLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA 361 (476)
T ss_dssp EEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH
T ss_pred EEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch
Confidence 489999998776543 346789999999999998877653322222222222 5899999999999655433
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
....+......+++++||++|.|+++++++|.+.+.
T Consensus 362 ---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 362 ---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 222333332368999999999999999999999886
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.60 E-value=1.3e-15 Score=111.76 Aligned_cols=108 Identities=17% Similarity=0.310 Sum_probs=84.9
Q ss_pred CceeccchhH----Hhhhhhhhh---cCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQER----FRTITSSYY---RGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~----~~~~~~~~~---~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+ +..+...|+ +++|++|+|+|+++ +.++.++..|+..+..+.. ...|+++|+||+|+..
T Consensus 209 ~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 209 VMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp EEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred EEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 4899999754 333445554 45999999999998 7889999889888887653 3689999999999854
Q ss_pred CcccCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 69 NKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 69 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
. .+....+.+.+. .+++++||+++.|+++++++|.+.+..
T Consensus 289 ~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 289 A----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp H----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred C----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 2 234455666665 689999999999999999999998853
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.59 E-value=4.9e-16 Score=116.87 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=80.4
Q ss_pred CceeccchhHHhhh-------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243 1 MQWDTAGQERFRTI-------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 73 (144)
Q Consensus 1 qi~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 73 (144)
+||||||+.+|..+ +..++.++|++++|+|+..... ...|+..+... +.|+++|+||+|+......
T Consensus 86 ~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~- 158 (423)
T 3qq5_A 86 TLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE- 158 (423)
T ss_dssp EEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCCT-
T ss_pred EEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccHH-
Confidence 48999999877654 4567899999999999943332 34566666554 5899999999999765443
Q ss_pred HHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 74 YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+....+.+..+++++++||++|.|++++|+.|.+.+..
T Consensus 159 -~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 159 -ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp -HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred -HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 44455555667899999999999999999999998753
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.59 E-value=6.2e-15 Score=115.04 Aligned_cols=105 Identities=22% Similarity=0.269 Sum_probs=83.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+.+|...+..++..+|++|+|+|+++..++.....|..... .+.|+++++||+|+.... .......+
T Consensus 74 ~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei 147 (599)
T 3cb4_D 74 NFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEI 147 (599)
T ss_dssp EEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHH
Confidence 489999999999999999999999999999988665665555554432 258999999999996532 13334555
Q ss_pred HHHcCC---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
...+++ +++++||++|.|++++++.|.+.+.
T Consensus 148 ~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 148 EDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 556665 5999999999999999999988764
No 140
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.58 E-value=9.3e-15 Score=113.97 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=83.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+||||||+.+|...+..++..+|++|+|+|+++..++.....|..... .+.|+++++||+|+..... .....++
T Consensus 76 nliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~~--~~v~~el 149 (600)
T 2ywe_A 76 HLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSADV--DRVKKQI 149 (600)
T ss_dssp EEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCCH--HHHHHHH
T ss_pred EEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccCH--HHHHHHH
Confidence 489999999999999999999999999999998766666655554432 2589999999999864321 2334445
Q ss_pred HHHcCC---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
....++ +++++||++|.|++++++.|.+.+.
T Consensus 150 ~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 150 EEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 555565 5899999999999999999988764
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=7.9e-15 Score=109.97 Aligned_cols=105 Identities=22% Similarity=0.285 Sum_probs=71.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC----HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SY 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~ 74 (144)
+||||||+++|...+...+..+|++++|+|+++ +.+++.+. .+.... ..|+++++||+|+.+.... ..
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEILG--IDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHTT--CCCEEEEEECTTSSCTTTTTTHH
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHcC--CCeEEEEEEccCCCCHHHHHHHH
Confidence 489999999999888888888999999999985 34444332 222221 3589999999999654332 23
Q ss_pred HHHHHHHHH---cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 75 ETAKAFADE---IGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 75 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+++..++.. .+++++++||++|.|++++++.|...+.
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 445555544 2568999999999999999999987653
No 142
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.58 E-value=1.6e-15 Score=107.90 Aligned_cols=106 Identities=25% Similarity=0.227 Sum_probs=80.0
Q ss_pred CceeccchhHHhh------hhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRT------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
+||||||+..+.. .++.|+ .++|++++|+|+++.. ....|+..+.... ..|+++++||+|+......
T Consensus 53 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~ 127 (271)
T 3k53_A 53 LVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGA 127 (271)
T ss_dssp EEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTC
T ss_pred EEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCccccc
Confidence 4899999987765 567777 7899999999998753 2233444443332 3899999999997533332
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.. ....+.+.++++++++||++|.|++++++.+...+..
T Consensus 128 ~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 128 KI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp CC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred HH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 22 2566777889999999999999999999999998754
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.57 E-value=1.6e-14 Score=110.48 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=79.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYE 75 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~ 75 (144)
+||||||+++|...+..++..+|++++|+|+++ +.+++.+. .+... ..|+++++||+|+.+.... ..+
T Consensus 76 ~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~ 148 (482)
T 1wb1_A 76 TLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDHF---NIPIIVVITKSDNAGTEEIKRTEM 148 (482)
T ss_dssp EECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT---TCCBCEEEECTTSSCHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHHc---CCCEEEEEECCCcccchhHHHHHH
Confidence 489999999999999999999999999999987 44444322 22222 4788999999999643211 123
Q ss_pred HHHHHHHHc----CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 76 TAKAFADEI----GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 76 ~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
++..++... +.+++++||++|.|++++++.|...+.
T Consensus 149 ~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 149 IMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 344455544 468999999999999999999999876
No 144
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.56 E-value=2.3e-15 Score=108.82 Aligned_cols=103 Identities=19% Similarity=0.174 Sum_probs=74.5
Q ss_pred CceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
+||||||+.+ +......++.++|++++|+|+++..+.. ..|+ ..+.... ...|+++|+||+|+.....
T Consensus 58 ~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 58 VFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp EEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH
T ss_pred EEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH
Confidence 4899999765 6667788899999999999998764433 2343 3444332 3589999999999864332
Q ss_pred cCHHHHHHHHHHc-C-CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 72 VSYETAKAFADEI-G-IPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 72 ~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
.....++.+ + .+++++||++|.|++++++.|...+
T Consensus 135 ----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 135 ----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp ----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 022233332 3 4789999999999999999988765
No 145
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.55 E-value=3.5e-15 Score=107.90 Aligned_cols=98 Identities=18% Similarity=0.158 Sum_probs=79.7
Q ss_pred chhHHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHc
Q 032243 7 GQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKAFADEI 84 (144)
Q Consensus 7 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~ 84 (144)
.+++++.+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .++...+++..
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA 141 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence 37888889999999999999999999886 88888899887655 258999999999996543222 33445566677
Q ss_pred CCcEEEeecCCCCCHHHHHHHHH
Q 032243 85 GIPFMETSAKDSTNVEQAFMAMA 107 (144)
Q Consensus 85 ~~~~~~~Sa~~~~~i~~l~~~i~ 107 (144)
+++++++||++|.|++++++.+.
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHhhcc
Confidence 89999999999999999998653
No 146
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.54 E-value=2.7e-14 Score=109.05 Aligned_cols=103 Identities=21% Similarity=0.169 Sum_probs=76.2
Q ss_pred Cceeccchh-HHh--------hhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQE-RFR--------TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~-~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
+||||||+. ++. .....+++++|++|+|+|++++.++.+.. ++..+ ...|+++|+||+|+...
T Consensus 294 ~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~-- 365 (482)
T 1xzp_A 294 RIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK-- 365 (482)
T ss_dssp EEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--
T ss_pred EEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--
Confidence 489999987 543 22456789999999999998877766532 33322 25799999999999643
Q ss_pred cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 72 VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+..++...+. ..+.+++++||++|.|+++++++|.+.+..
T Consensus 366 ~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 366 INEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp CCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred cCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3344443332 234689999999999999999999998664
No 147
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.54 E-value=1.9e-14 Score=108.01 Aligned_cols=105 Identities=19% Similarity=0.259 Sum_probs=75.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC----HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SY 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~ 74 (144)
.||||||+++|...+...+..+|++++|+|+++ +.+++.+. .+.... ..|+++++||+|+.+.... ..
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence 389999999999888888889999999999985 33444332 222222 3579999999998653221 12
Q ss_pred HHHHHHHHH---cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 75 ETAKAFADE---IGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 75 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+++..++.. .+++++++||++|.|++++++.|...+.
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 233344433 2469999999999999999999887653
No 148
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.53 E-value=7.1e-14 Score=109.07 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=77.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC----
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS---- 73 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---- 73 (144)
+||||||+++|..++..++..+|++|+|+|+++ +.++..+.. +.. ...|+++++||+|+.......
T Consensus 73 ~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~ 145 (594)
T 1g7s_A 73 FFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRP 145 (594)
T ss_dssp EEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCC
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCc
Confidence 489999999999999999999999999999998 666654432 222 258999999999985421100
Q ss_pred ---------HH----------HHHHHHHHcC---------------CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 74 ---------YE----------TAKAFADEIG---------------IPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 74 ---------~~----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.. +........+ ++++++||++|.|+++++++|...+...
T Consensus 146 ~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 146 FMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 00 1111111111 3799999999999999999999887643
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.53 E-value=2.4e-14 Score=108.23 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=74.0
Q ss_pred CceeccchhH---------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQER---------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
++|||||++. +...+..+++++|+++||+|+++..+..+ .++..+.... ..|+++|+||+|+...
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~~--~~p~ilv~NK~D~~~~-- 125 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLRE-- 125 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHH--
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEeCCCCccc--
Confidence 4899999753 45667888999999999999987543332 2222222222 4899999999997421
Q ss_pred cCHHHH-HHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 72 VSYETA-KAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 72 ~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
. .... ..+. ..++ +++++||++|.|+.++++.+...+..
T Consensus 126 ~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 126 F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 1 1122 2333 4566 78999999999999999999998864
No 150
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=103.56 Aligned_cols=105 Identities=8% Similarity=-0.026 Sum_probs=72.8
Q ss_pred eccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHH---HHH-Hh-cCCCCcEEEEEeC-CCCCCCcccCHHHH
Q 032243 4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN---EID-RY-ASDNVNKLLVGNK-CDLTANKVVSYETA 77 (144)
Q Consensus 4 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~-~~-~~~~~p~ilv~nK-~Dl~~~~~~~~~~~ 77 (144)
|.|||.+++++|++||+++|++|||+|++|.+.++ ....+. .+. .. ...+.|++|++|| .|+.. ..+..++
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI 269 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYL 269 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHH
Confidence 46799999999999999999999999999987544 222222 222 11 1246899999996 68743 3334443
Q ss_pred HHHHH----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 78 KAFAD----EIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 78 ~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
..... ...|.+..+||.+|+|+.+.++||...+.
T Consensus 270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 32221 12467899999999999999999998874
No 151
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.52 E-value=2e-14 Score=106.52 Aligned_cols=107 Identities=6% Similarity=-0.031 Sum_probs=78.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCcccCH--HH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGN-KCDLTANKVVSY--ET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~Dl~~~~~~~~--~~ 76 (144)
+||||||+++|...+...+..+|++|+|+| + ...+....+++..+... ..|. ++++| |+|+ +...+.. ++
T Consensus 63 ~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~ 136 (370)
T 2elf_A 63 VFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAK 136 (370)
T ss_dssp EEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHH
Confidence 489999999998888888999999999999 4 33444455555555443 3677 88999 9998 4322211 33
Q ss_pred HHHHHHHcC---CcEEE--eecCC---CCCHHHHHHHHHHHHHHh
Q 032243 77 AKAFADEIG---IPFME--TSAKD---STNVEQAFMAMAASIKDR 113 (144)
Q Consensus 77 ~~~~~~~~~---~~~~~--~Sa~~---~~~i~~l~~~i~~~~~~~ 113 (144)
+..++...+ +++++ +||++ +.|++++++.|.+.+...
T Consensus 137 i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 137 LKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp HHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 344443333 68999 99999 999999999999887643
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.51 E-value=3.2e-14 Score=107.59 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=69.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc--
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKV-- 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-- 71 (144)
.||||||+++|...+..++..+|++|||+|+++... |. .....+..... ...| +++++||+|+.....
T Consensus 98 ~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 98 TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred EEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcccchHH
Confidence 489999999999999999999999999999987421 11 11222222222 2356 899999999853210
Q ss_pred ----cCHHHHHHHHHHcC------CcEEEeecCCCCCHHHHHH
Q 032243 72 ----VSYETAKAFADEIG------IPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 72 ----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 104 (144)
...++...+++..+ ++++++||++|.|+.++++
T Consensus 175 ~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 175 ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11223344444444 4799999999999999766
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.51 E-value=7.4e-14 Score=107.72 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=51.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+|...+..++..+|++|+|+|+++......... +..+... ++|+++++||+|+..
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~~~~~---~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 85 NLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEVCRLR---HTPIMTFINKMDRDT 148 (528)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHHHHTT---TCCEEEEEECTTSCC
T ss_pred EEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHHc---CCCEEEEEeCCCCcc
Confidence 489999999999999999999999999999998655554433 3333322 589999999999854
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.51 E-value=5.2e-14 Score=107.62 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=65.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN------VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY 74 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 74 (144)
+||||||+++|...+..++..+|++|+|+|+++..++.. ....+...... ...|+++++||+|+.+......
T Consensus 114 ~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~~ 191 (483)
T 3p26_A 114 TIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQRF 191 (483)
T ss_dssp EEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHHHH
T ss_pred EEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHHHH
Confidence 489999999999999999999999999999988643322 11212222221 2356999999999865322222
Q ss_pred H----HHHHHHHHcC-----CcEEEeecCCCCCHHH
Q 032243 75 E----TAKAFADEIG-----IPFMETSAKDSTNVEQ 101 (144)
Q Consensus 75 ~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 101 (144)
+ ++..+....+ ++++++||++|.|+.+
T Consensus 192 ~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 192 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 2 2233333333 5789999999999985
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.49 E-value=2.5e-14 Score=108.01 Aligned_cols=101 Identities=19% Similarity=0.127 Sum_probs=72.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--c--CHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--V--SYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~--~~~~ 76 (144)
+||||||+++|...+..++..+|++|+|+|+++.... ....++..+.... ..|+++++||+|+.+... . ...+
T Consensus 107 ~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~~~i~~~ 183 (434)
T 1zun_B 107 IIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVFESIKAD 183 (434)
T ss_dssp EEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHHHHHHHH
Confidence 4899999999999999999999999999999875322 2233443333222 236899999999965211 1 1234
Q ss_pred HHHHHHHcC-----CcEEEeecCCCCCHHHHHH
Q 032243 77 AKAFADEIG-----IPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 77 ~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 104 (144)
...+++..+ ++++++||++|.|+.++++
T Consensus 184 ~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 184 YLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 455566666 5899999999999998544
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.49 E-value=3.2e-14 Score=107.49 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=73.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----c-CCCCcEEEEEeCCCCCCCc--c--
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----A-SDNVNKLLVGNKCDLTANK--V-- 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~-~~~~p~ilv~nK~Dl~~~~--~-- 71 (144)
+||||||+++|...+..++..+|++|+|+|+++ .+|+.+..|....... . ....++++++||+|+.+.. +
T Consensus 87 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~ 165 (435)
T 1jny_A 87 TIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR 165 (435)
T ss_dssp EECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHH
T ss_pred EEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHH
Confidence 489999999999999999999999999999998 6777543322211111 1 1124689999999986521 1
Q ss_pred --cCHHHHHHHHHHcC-----CcEEEeecCCCCCHHHHHH
Q 032243 72 --VSYETAKAFADEIG-----IPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 72 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 104 (144)
...+++..++...+ ++++++||++|.|+.++++
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 166 YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 11344555666655 5799999999999986654
No 157
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.49 E-value=2e-14 Score=108.67 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=69.6
Q ss_pred Cceeccchh--------HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQE--------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++|||||++ ++...+..+++.+|+++||+|+.+..++.+ .++..+... ...|+++++||+|+.....
T Consensus 54 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~- 128 (436)
T 2hjg_A 54 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA- 128 (436)
T ss_dssp EEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC------
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchh-
Confidence 489999985 678888899999999999999987655443 333333222 3689999999999854321
Q ss_pred CHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 73 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
....+. ..++ +++++||++|.|+.++++++...+.
T Consensus 129 ---~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 129 ---NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ---CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred ---hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 111122 3455 7899999999999999999988774
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.48 E-value=5e-15 Score=114.16 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=76.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC-HHHHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKA 79 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~ 79 (144)
+||||||++.|..++..++..+|++++|+|+++....... ..+..+. ....|+++++||+|+....... ..+...
T Consensus 55 ~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~ 130 (537)
T 3izy_P 55 TFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLA 130 (537)
T ss_dssp BCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHH
T ss_pred EEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHHHHHH---HcCCcEEEEEecccccccchHHHHHHHHh
Confidence 4899999999999999999999999999999885444332 2222232 2358999999999986432111 111111
Q ss_pred H---HHHc--CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 80 F---ADEI--GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 80 ~---~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+ ...+ .++++++||++|.|++++++.|...+.
T Consensus 131 ~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 131 YDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred hhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 1 1111 247899999999999999999988764
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.48 E-value=3.8e-14 Score=106.13 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=69.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc---CHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~ 76 (144)
+||||||+++|...+..++..+|++|+|+|+++.... ....++..+... ..| +++++||+|+...... ...+
T Consensus 78 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~ 153 (405)
T 2c78_A 78 SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEME 153 (405)
T ss_dssp EEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHH
Confidence 4899999999999999999999999999999875432 334555544433 467 8899999998642211 1224
Q ss_pred HHHHHHHcC-----CcEEEeecCCCCC
Q 032243 77 AKAFADEIG-----IPFMETSAKDSTN 98 (144)
Q Consensus 77 ~~~~~~~~~-----~~~~~~Sa~~~~~ 98 (144)
...+++..+ ++++++||++|.|
T Consensus 154 ~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 154 VRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHhcccccCCCEEEccHHHhhh
Confidence 455565555 5899999999987
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.46 E-value=1.2e-13 Score=103.20 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=75.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc---CHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~ 76 (144)
+||||||+++|...+..++..+|++|+|+|+++...... ...+..+... ..| +++++||+|+...... ...+
T Consensus 69 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~ 144 (397)
T 1d2e_A 69 AHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELE 144 (397)
T ss_dssp EEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHH
Confidence 489999999999999999999999999999987432222 2333333322 477 6899999998642211 1234
Q ss_pred HHHHHHHcC-----CcEEEeecCCCCC----------HHHHHHHHHHHH
Q 032243 77 AKAFADEIG-----IPFMETSAKDSTN----------VEQAFMAMAASI 110 (144)
Q Consensus 77 ~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~l~~~i~~~~ 110 (144)
...+++..+ ++++++||++|.| +.++++.|...+
T Consensus 145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 555666655 5899999999764 778887776654
No 161
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.46 E-value=7e-14 Score=106.29 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=65.8
Q ss_pred CceeccchhHHhhhhh--------hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAGQERFRTITS--------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
+||||||+.++...++ .++..+|++++|+|.+++.+... ..|+..+. ..|+++|+||+|+......
T Consensus 275 ~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~ 348 (462)
T 3geh_A 275 QVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLI 348 (462)
T ss_dssp EECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGS
T ss_pred EEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhh
Confidence 4899999876654333 35788999999999988655543 34444442 3699999999999654433
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
. ....+. .+.+++++||++|.|++++++.|.+.+..
T Consensus 349 ~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 349 T--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp T--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred H--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 2 110011 34689999999999999999999998754
No 162
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.45 E-value=1e-14 Score=111.11 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=60.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCc---c--
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANK---V-- 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---~-- 71 (144)
+||||||+++|...+..++..+|++|+|+|+++. .+|+...++...+.......+| +++++||+|+.... .
T Consensus 124 ~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~ 203 (467)
T 1r5b_A 124 SLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY 203 (467)
T ss_dssp EECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred EEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHH
Confidence 4899999999999999999999999999999875 2333222222222222222466 89999999985321 0
Q ss_pred -cCHHHHHHHHHHc-C------CcEEEeecCCCCCHHHHH
Q 032243 72 -VSYETAKAFADEI-G------IPFMETSAKDSTNVEQAF 103 (144)
Q Consensus 72 -~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~l~ 103 (144)
....+...++... + ++++++||++|.|+.+++
T Consensus 204 ~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 204 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1122455555555 3 569999999999998766
No 163
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.44 E-value=2e-12 Score=95.71 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=77.8
Q ss_pred Cceeccch---------hHHhhhhhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQ---------ERFRTITSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
++|||+|. +.|...+. .+..+|++++|+|++++. ....+..|...+........|+++|+||+|+.+.
T Consensus 229 ~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 229 MLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp EEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 37999996 33555444 478899999999998876 5555555555554443346899999999998653
Q ss_pred cccC-HHHHHHHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 70 KVVS-YETAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 70 ~~~~-~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.... ...+..++... +.+++++||+++.|++++++.|...+...
T Consensus 308 ~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 308 DLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 2100 01222233444 24789999999999999999999887653
No 164
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.44 E-value=1.1e-13 Score=99.98 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=73.1
Q ss_pred Cceeccchh-H--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQE-R--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~-~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
.||||||+. + +......++..+|++++|+|.++ +.....++..... ....|+++++||+|+.....
T Consensus 59 ~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~ 133 (301)
T 1ega_A 59 IYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKA 133 (301)
T ss_dssp EEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHH
T ss_pred EEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHH
Confidence 379999987 2 34445667889999999999876 2222333333222 22589999999999864222
Q ss_pred cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 72 VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
...+.+..+.+..++ .++++||+++.|++++++.+...+.
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 112334444445565 6899999999999999999887653
No 165
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.6e-13 Score=91.24 Aligned_cols=71 Identities=23% Similarity=0.393 Sum_probs=59.3
Q ss_pred CceeccchhHHhhhhhhhhcC----CCEEEEEEeCC-CHHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcc
Q 032243 1 MQWDTAGQERFRTITSSYYRG----AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
+||||||++++...+..++.+ +|++++|||++ +..++..+..|+..+... .....|+++|+||+|+.+...
T Consensus 94 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 94 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp SEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 589999999998888888776 89999999999 889999888888777554 224699999999999976544
No 166
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.40 E-value=2.3e-12 Score=97.44 Aligned_cols=110 Identities=23% Similarity=0.275 Sum_probs=72.5
Q ss_pred CceeccchhHHhhhh------------hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTIT------------SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
++|||+|+.++.... ..++..+|++++|+|+++..+..+. .+...+.. ...|+++++||.|+..
T Consensus 231 ~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 231 VFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVV 306 (439)
T ss_dssp EESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGST
T ss_pred EEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCC
Confidence 379999986543221 3467789999999999875554432 22222222 2589999999999876
Q ss_pred CcccCHHHHHH-HHHHc----CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 69 NKVVSYETAKA-FADEI----GIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 69 ~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
.......+... +...+ +.+++++||++|.|++++|+.+...+....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 307 HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp TGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 54433333322 22222 468999999999999999999998876543
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.2e-13 Score=108.19 Aligned_cols=102 Identities=18% Similarity=0.102 Sum_probs=67.7
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccC---
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVS--- 73 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~--- 73 (144)
+||||||+++|...+..++..+|++|+|+|+++.. +|.....+...+..... ...|+++++||+|+.+.....
T Consensus 248 ~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~e 327 (611)
T 3izq_1 248 TIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE 327 (611)
T ss_dssp EEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHH
T ss_pred EEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHH
Confidence 48999999999999999999999999999998632 11001111122211111 124599999999996532211
Q ss_pred -HHHHHHHHHHcC-----CcEEEeecCCCCCHHHH
Q 032243 74 -YETAKAFADEIG-----IPFMETSAKDSTNVEQA 102 (144)
Q Consensus 74 -~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 102 (144)
..++..+....+ ++++++||++|.|+.++
T Consensus 328 i~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 328 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 223333444444 58999999999999876
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.39 E-value=7.5e-13 Score=108.93 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=75.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc---CHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYET 76 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~ 76 (144)
+||||||+++|...+..++..+|++|+|+|+++..... ...++..+... .+| +++++||+|+.+.... ...+
T Consensus 362 ~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eE 437 (1289)
T 3avx_A 362 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEME 437 (1289)
T ss_dssp EEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHH
Confidence 48999999999999999999999999999998753222 33444444333 477 7899999999643221 1234
Q ss_pred HHHHHHHcC-----CcEEEeecCCC--------CCHHHHHHHHHHHH
Q 032243 77 AKAFADEIG-----IPFMETSAKDS--------TNVEQAFMAMAASI 110 (144)
Q Consensus 77 ~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~l~~~i~~~~ 110 (144)
+..++...+ ++++++||++| .|+.++++.|...+
T Consensus 438 i~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 555666655 58999999999 45777777766544
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.36 E-value=4.2e-13 Score=101.99 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=69.0
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc--
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN---NVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKV-- 71 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-- 71 (144)
+||||||+++|...+..++..+|++|+|+|+++.. +|+ .....+...... ..| +++++||+|+.+...
T Consensus 88 ~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~~~~~~ 164 (458)
T 1f60_A 88 TVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWDESR 164 (458)
T ss_dssp EEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTCHHH
T ss_pred EEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccccccCCHHH
Confidence 48999999999999999999999999999998652 221 222222222222 355 899999999863111
Q ss_pred --cCHHHHHHHHHHcC-----CcEEEeecCCCCCHHHH
Q 032243 72 --VSYETAKAFADEIG-----IPFMETSAKDSTNVEQA 102 (144)
Q Consensus 72 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 102 (144)
....++..++...+ ++++++||++|.|+.++
T Consensus 165 ~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 165 FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11233445555555 68999999999999754
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.36 E-value=7.2e-14 Score=106.96 Aligned_cols=101 Identities=20% Similarity=0.289 Sum_probs=71.3
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--ccCHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VVSYE 75 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~ 75 (144)
.||||||++.|..++..++..+|++++|+|+++ +.+.+. +..... ...|+++++||+|+.... .+...
T Consensus 54 ~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~----l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~ 126 (501)
T 1zo1_I 54 TFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA----IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNE 126 (501)
T ss_dssp CEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH----HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCC
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHH----HHHHHh---cCceEEEEEEeccccccCHHHHHHH
Confidence 589999999999999999999999999999987 333332 222222 258999999999985421 11000
Q ss_pred --HHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHH
Q 032243 76 --TAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 76 --~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
+...+.+.++ ++++++||++|.|++++|+.|..
T Consensus 127 l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 127 LSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 0000111222 58999999999999999998864
No 171
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.36 E-value=4.8e-13 Score=101.56 Aligned_cols=102 Identities=19% Similarity=0.136 Sum_probs=70.1
Q ss_pred Cceeccc--------hhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 1 MQWDTAG--------QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 1 qi~Dt~G--------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
++||||| ++++...+..++..+|++|||+|..+..+. ...++..+... ...|+++|+||+|+....
T Consensus 74 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~-- 147 (456)
T 4dcu_A 74 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMR-- 147 (456)
T ss_dssp EEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC--------
T ss_pred EEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhh--
Confidence 4899999 888999999999999999999998763222 22333333332 368999999999985321
Q ss_pred CHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 73 SYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 73 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.....+. ..++ ..+++||++|.|+.++++.+...+.
T Consensus 148 --~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 148 --ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp -----CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred --hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 1111111 2333 6789999999999999999987654
No 172
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.35 E-value=9.1e-12 Score=86.80 Aligned_cols=110 Identities=14% Similarity=0.164 Sum_probs=72.6
Q ss_pred Cceeccc-----------hhHHhhhhhhhhcCCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAG-----------QERFRTITSSYYRGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G-----------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+|||||| +.++...+..++.++|++|+|+|+++... ...+..+...+.... ..|+++|+||.|+.
T Consensus 81 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~ 158 (239)
T 3lxx_A 81 VVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDL 158 (239)
T ss_dssp EEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccC
Confidence 4899999 45666667777788999999999875432 222222222221111 35899999999986
Q ss_pred CCcccC------HHHHHHHHHHcCCcEEEeecCCC-----CCHHHHHHHHHHHHHH
Q 032243 68 ANKVVS------YETAKAFADEIGIPFMETSAKDS-----TNVEQAFMAMAASIKD 112 (144)
Q Consensus 68 ~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~l~~~i~~~~~~ 112 (144)
....+. .+.+..+++..+..++.+++..+ .++.++|+.+...+..
T Consensus 159 ~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 159 GDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 554432 13566777788888888877644 6889999988887754
No 173
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.34 E-value=1.1e-12 Score=92.53 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=69.6
Q ss_pred CceeccchhHH-----------hhhhhhhhcCCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCCCCcEEEEEe-CCCCC
Q 032243 1 MQWDTAGQERF-----------RTITSSYYRGAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGN-KCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~n-K~Dl~ 67 (144)
+||||||+..+ ......++.++|++++|+|+++.... ..+..++..+.... ...|.++++| |.|+.
T Consensus 74 ~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 74 VIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLN 152 (260)
T ss_dssp EEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGT
T ss_pred EEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccC
Confidence 48999998654 22334467899999999999862221 22223333321111 0246666666 99986
Q ss_pred CCcccCH-------HHHHHHHHHcCCc---E--EEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 68 ANKVVSY-------ETAKAFADEIGIP---F--METSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 68 ~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.. .+.. ..+..+....+.. + +++||+++.|++++|+.|.+.+...
T Consensus 153 ~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 153 GG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Cc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 43 2211 2233455555432 2 7899999999999999999998753
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.34 E-value=2.3e-13 Score=97.59 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=72.4
Q ss_pred Cceeccchh-------------HHhhhhhhhhcCCCEEE-EEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 1 MQWDTAGQE-------------RFRTITSSYYRGAHGII-IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 1 qi~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
+||||||.. .+..++..|+.+++.++ +|+|+++..+..+...++..+. ....|+++|+||+|+
T Consensus 128 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 128 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLDL 204 (299)
T ss_dssp EEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEECGGG
T ss_pred eEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEcccc
Confidence 489999963 57778889999998777 7899887543333333333332 235899999999999
Q ss_pred CCCcccCHHHHHHHHHHc--C-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 67 TANKVVSYETAKAFADEI--G-IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~--~-~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
.+......+......... + .+++++||++|.|++++++.+.....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 205 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp SCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred CCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 654332222221100011 2 26789999999999999999887543
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.30 E-value=8.4e-12 Score=98.71 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=49.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+||||||+.+|...+..++..+|++++|+|+++..... ...++..+... ..|+++++||+|+.
T Consensus 77 nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 77 FLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred EEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence 58999999999999999999999999999987643322 23444444332 58999999999985
No 176
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=2e-13 Score=100.94 Aligned_cols=107 Identities=20% Similarity=0.232 Sum_probs=56.6
Q ss_pred Cceeccch-------hHHhhhhh-------hhhcCC-------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcC
Q 032243 1 MQWDTAGQ-------ERFRTITS-------SYYRGA-------------HGIIIVYDVTDQESFNNVK-QWLNEIDRYAS 52 (144)
Q Consensus 1 qi~Dt~G~-------~~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~ 52 (144)
++|||+|+ ++|..++. .|+..+ |+++++++.+ ..++..+. .++..+ .
T Consensus 98 ~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~ 172 (361)
T 2qag_A 98 TVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----H 172 (361)
T ss_dssp EEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----C
T ss_pred EEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----c
Confidence 48999999 77777776 666543 3455555532 23344443 233322 2
Q ss_pred CCCcEEEEEeCCCCCCCcccCH--HHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 53 DNVNKLLVGNKCDLTANKVVSY--ETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 53 ~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
...|+++|+||+|+.....+.. ..+..++...+++++++||+++.+ ++.|..+...+...
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 4689999999999976544422 345555666688999999999999 88888888888653
No 177
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.27 E-value=3.3e-11 Score=89.29 Aligned_cols=97 Identities=24% Similarity=0.352 Sum_probs=72.3
Q ss_pred chhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHH
Q 032243 7 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK----AFAD 82 (144)
Q Consensus 7 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~ 82 (144)
..++|.++++.+++.+|++++|+|++++. ..|...+..... +.|+++|+||+|+.+.. ...+... .+++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35789999999999999999999999853 334444444432 58999999999996543 2233333 3355
Q ss_pred HcCC---cEEEeecCCCCCHHHHHHHHHHHH
Q 032243 83 EIGI---PFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 83 ~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
..++ +++.+||++|.|++++++.+....
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6676 799999999999999999986643
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.26 E-value=9.9e-13 Score=97.03 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=73.1
Q ss_pred CceeccchhHH-------------hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+||||||..++ ..+...|+.++|++|+|+|..+.+... ..|+..+........|+++|+||.|+.
T Consensus 139 ~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~Dl~ 216 (360)
T 3t34_A 139 TLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKIDLM 216 (360)
T ss_dssp EEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGGGC
T ss_pred EEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCccC
Confidence 37999998765 667889999999999999875433221 233344444444467999999999997
Q ss_pred CCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 68 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
+......+.........+.+|+++++.++.++++.+.....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 217 DKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp CTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred CCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 65444343333333445678999999998888776554433
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.24 E-value=2.9e-11 Score=96.02 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=51.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+|...+..++..+|++|+|+|+++..++.....|. .+... +.|+++++||+|+..
T Consensus 80 ~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~---~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 80 NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY---KVPRIAFANKMDKTG 143 (691)
T ss_dssp EEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECTTSTT
T ss_pred EEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc---CCCEEEEEECCCccc
Confidence 48999999999999999999999999999999876666544443 23332 589999999999854
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.23 E-value=1.8e-11 Score=97.18 Aligned_cols=108 Identities=14% Similarity=0.209 Sum_probs=75.1
Q ss_pred ceeccchhHH---hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH---
Q 032243 2 QWDTAGQERF---RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE--- 75 (144)
Q Consensus 2 i~Dt~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--- 75 (144)
||||||.... ...+..++.++|++|||+|+++..+..+...|...+.. ...|+++|+||+|+.....++.+
T Consensus 178 LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e 254 (695)
T 2j69_A 178 IVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPDDVE 254 (695)
T ss_dssp EEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTTCHH
T ss_pred EEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChhhHH
Confidence 7999998663 45667889999999999999887776665555433322 24789999999998543211110
Q ss_pred -------HHHH-----HHHHc--------CCcEEEeecC--------------CCCCHHHHHHHHHHHHHH
Q 032243 76 -------TAKA-----FADEI--------GIPFMETSAK--------------DSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 76 -------~~~~-----~~~~~--------~~~~~~~Sa~--------------~~~~i~~l~~~i~~~~~~ 112 (144)
.... +.... ..+++++||+ ++.|++++++.+...+..
T Consensus 255 ~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 255 ELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1111 11111 1378999999 999999999999887753
No 181
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.22 E-value=3.7e-11 Score=84.39 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=71.3
Q ss_pred Cceeccch--------hHHhhhhhhhh----cCCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQ--------ERFRTITSSYY----RGAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~--------~~~~~~~~~~~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+||||||. +++...+..++ .++|++|+|+|+++.... ..+..++..+........|++|++||.|+.
T Consensus 73 ~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 73 EVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA 152 (247)
T ss_dssp EEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred EEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC
Confidence 48999996 33433333333 899999999999753211 122233333221111257999999999985
Q ss_pred CCccc------CHHHHHHHHHHcCCcEEEeecCC-----CCCHHHHHHHHHHHHHH
Q 032243 68 ANKVV------SYETAKAFADEIGIPFMETSAKD-----STNVEQAFMAMAASIKD 112 (144)
Q Consensus 68 ~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~~l~~~i~~~~~~ 112 (144)
..... ....+..+.+..+..++.+++.. +.|+.+|++.|..++..
T Consensus 153 ~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 153 GGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 43210 01335667777787777776554 57999999999888864
No 182
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.22 E-value=2.8e-12 Score=91.33 Aligned_cols=86 Identities=9% Similarity=0.055 Sum_probs=47.2
Q ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH--HHHHHHHHHcCCcEEEeecCCCCCH
Q 032243 22 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ETAKAFADEIGIPFMETSAKDSTNV 99 (144)
Q Consensus 22 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i 99 (144)
+|+++++++.+.......-..++..+.. ..|+++|+||+|+....+... ..+.......+++++.+||.++.|+
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEE 191 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence 7899999976653211111233444432 589999999999864333211 2234445566889999999999999
Q ss_pred HHHHHHHHHHHH
Q 032243 100 EQAFMAMAASIK 111 (144)
Q Consensus 100 ~~l~~~i~~~~~ 111 (144)
.+++++|...+.
T Consensus 192 ~~l~~~l~~~~p 203 (274)
T 3t5d_A 192 NKLVKKIKDRLP 203 (274)
T ss_dssp ---CHHHHHTCS
T ss_pred HHHHHHHhcCCC
Confidence 999999887653
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.20 E-value=1.1e-12 Score=102.58 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=56.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS 73 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~ 73 (144)
.||||||+++|...+..++..+|++|||+|+++.. .+ ......+..+... ..| +++++||+|+.+.....
T Consensus 258 ~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~~~~~ 334 (592)
T 3mca_A 258 EIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSWSEDR 334 (592)
T ss_dssp -CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTTCHHH
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccccHHH
Confidence 48999999999999889999999999999987521 11 0111112222222 355 89999999985421111
Q ss_pred ----HHHHHHHH-HHcCC-----cEEEeecCCCCCHH
Q 032243 74 ----YETAKAFA-DEIGI-----PFMETSAKDSTNVE 100 (144)
Q Consensus 74 ----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 100 (144)
..++..+. ...++ +++++||++|.|+.
T Consensus 335 ~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 335 FQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 12233333 33444 69999999999998
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.20 E-value=1.1e-10 Score=90.21 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=48.2
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+|...+..++..+|++|+|+|+++..... ...++.... ....|+++++||+|+..
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 85 NLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred EEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 48999999999998889999999999999998743211 122222222 23589999999999854
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.17 E-value=2e-10 Score=91.40 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=49.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+|...+..++..+|++|+|+|+++......... +..... .+.|+++++||+|+..
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHHHHH---cCCCEEEEEeCCCccc
Confidence 489999999999999999999999999999987654443332 233322 2589999999999853
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.17 E-value=1.1e-10 Score=87.64 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=77.8
Q ss_pred ceeccchhH----Hhhhhhh---hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccc
Q 032243 2 QWDTAGQER----FRTITSS---YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 2 i~Dt~G~~~----~~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~ 72 (144)
+|||+|..+ +..+... .+++++.+++++|++ ..++.++..+...+..+.. ...|.++++||.|+... .
T Consensus 209 l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~- 285 (416)
T 1udx_A 209 LADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E- 285 (416)
T ss_dssp EEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-
T ss_pred EEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-
Confidence 799999732 2112222 256799999999997 5566666666665544321 14789999999998543 1
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 114 (144)
............+++++.+||+++.|++++++.|...+....
T Consensus 286 ~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 286 AVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 133344445556789999999999999999999999987543
No 187
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.16 E-value=8.2e-11 Score=79.97 Aligned_cols=105 Identities=12% Similarity=0.194 Sum_probs=70.1
Q ss_pred Cceeccchh----------HHhhhhhhhh---cCCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 1 MQWDTAGQE----------RFRTITSSYY---RGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 1 qi~Dt~G~~----------~~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
++|||+|.. .|......++ ..++++++++|+++..++.+ +..|+. . ...|+++++||.|
T Consensus 75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK~D 148 (210)
T 1pui_A 75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTKAD 148 (210)
T ss_dssp EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEECGG
T ss_pred EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEeccc
Confidence 379999973 3444444555 47899999999987544432 222322 1 2588999999999
Q ss_pred CCCCccc--CHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 66 LTANKVV--SYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 66 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
+...... ....+..++...+ +.++++||+++.|++++++.|.+.+.
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 8643211 1123333444443 47789999999999999999988764
No 188
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.16 E-value=8.9e-11 Score=86.97 Aligned_cols=97 Identities=22% Similarity=0.341 Sum_probs=70.7
Q ss_pred chhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHH
Q 032243 7 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA----FAD 82 (144)
Q Consensus 7 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~ 82 (144)
.+++|.++++.++++++++++|+|++++.+ .|...+..... ..|+++|+||+|+.+.. ...+.... +++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 478899999999999999999999998763 23333333332 58999999999996543 22333332 345
Q ss_pred HcCC---cEEEeecCCCCCHHHHHHHHHHHH
Q 032243 83 EIGI---PFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 83 ~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
..++ .++.+||++|.|++++++.+....
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666 689999999999999999887654
No 189
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.15 E-value=1.5e-10 Score=81.37 Aligned_cols=106 Identities=17% Similarity=0.067 Sum_probs=65.7
Q ss_pred ceeccchhHHhhhhh------hhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243 2 QWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 72 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 72 (144)
||||||+.++..... ..+.+ +++++++|.... ..+.....+....... ...|+++|+||+|+......
T Consensus 113 iiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~~~~~ 189 (262)
T 1yrb_A 113 LIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEEEK 189 (262)
T ss_dssp EEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHHHH
T ss_pred EEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccccccH
Confidence 899999987643321 24466 899999987542 2222221111111111 14799999999998643211
Q ss_pred CHHHHHH----------------------------HHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 73 SYETAKA----------------------------FADEIG--IPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 73 ~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.+... +++..+ .+++++||+++.|+++++++|.+.+..
T Consensus 190 --~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 190 --ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp --HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 11111 123333 489999999999999999999988753
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.15 E-value=5e-11 Score=86.06 Aligned_cols=109 Identities=14% Similarity=0.209 Sum_probs=67.5
Q ss_pred CceeccchhH-------------HhhhhhhhhcCCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 1 MQWDTAGQER-------------FRTITSSYYRGAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 1 qi~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
.||||||..+ +..++..++.++|++++|+|.++.... .+...++..+ .....|+++|+||+|+
T Consensus 134 ~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl 210 (315)
T 1jwy_B 134 TLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKLDL 210 (315)
T ss_dssp EEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECTTS
T ss_pred EEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcCccc
Confidence 3799999743 667788899999999999997433211 1111222222 2236899999999998
Q ss_pred CCCcccCHHHHHHHHHHcCCcEEEeecCC------CCCHHHHHHHHHHHHHH
Q 032243 67 TANKVVSYETAKAFADEIGIPFMETSAKD------STNVEQAFMAMAASIKD 112 (144)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~l~~~i~~~~~~ 112 (144)
........+.+.......+..++++++.+ +.|+.++++.+...+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 211 MDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 65443212222110011224566665544 68899999988888753
No 191
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.13 E-value=2.4e-10 Score=90.79 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=51.4
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+|...+..++..+|++|+|+|+++..+......| ..+... ..|+++++||+|+..
T Consensus 78 ~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 78 NIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp EEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSTT
T ss_pred EEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHHc---CCCEEEEEECCCccc
Confidence 4899999999999999999999999999999886665554443 333332 589999999999864
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.11 E-value=2.8e-11 Score=89.19 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=65.5
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
||||+|... .....+..+|++++|+|....+.+..+.. .. ...|+++|+||+|+.+.... ......+.
T Consensus 176 iiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------~~--~~~p~ivVlNK~Dl~~~~~~-~~~~~~l~ 243 (355)
T 3p32_A 176 LIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK------GV--LELADIVVVNKADGEHHKEA-RLAARELS 243 (355)
T ss_dssp EEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT------TS--GGGCSEEEEECCCGGGHHHH-HHHHHHHH
T ss_pred EEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH------hH--hhcCCEEEEECCCCcChhHH-HHHHHHHH
Confidence 799999432 22344688999999999865443322111 01 13689999999998532221 11112222
Q ss_pred HH---c-------CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 82 DE---I-------GIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 82 ~~---~-------~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.. . +.+++++||++|.|++++++.|.+.+..
T Consensus 244 ~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 244 AAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 21 1 4689999999999999999999998865
No 193
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.05 E-value=5.1e-10 Score=80.09 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=70.4
Q ss_pred eccchh-HHhhhhhhhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 4 DTAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 4 Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
..||+. +........++++|++++|+|+.++.+.. .+..++ ...|.++|+||+|+.+... .+....+
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~~ 74 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKEH 74 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHHH
Confidence 357775 55556667799999999999999886553 333332 3589999999999964211 1222334
Q ss_pred HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243 81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113 (144)
Q Consensus 81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 113 (144)
.+..+++++.+||.++.|++++++.+...+...
T Consensus 75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 75 FENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 445578999999999999999999888887643
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.04 E-value=1.8e-10 Score=78.97 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=64.5
Q ss_pred ceeccchhHHhhhhhhhh-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYY-RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
+|||+|+.. .+.++ ...+.+++|+|+++... ....+.. .. ..|.++++||+|+.+.......+....
T Consensus 113 iidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~~~~~~~ 180 (221)
T 2wsm_A 113 LIENVGNLI----CPVDFDLGENYRVVMVSVTEGDD--VVEKHPE---IF---RVADLIVINKVALAEAVGADVEKMKAD 180 (221)
T ss_dssp EEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTT--HHHHCHH---HH---HTCSEEEEECGGGHHHHTCCHHHHHHH
T ss_pred EEeCCCCCC----CCchhccccCcEEEEEeCCCcch--hhhhhhh---hh---hcCCEEEEecccCCcchhhHHHHHHHH
Confidence 788888511 11111 25789999999875431 1111111 11 368999999999853222345555555
Q ss_pred HHHc--CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 81 ADEI--GIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 81 ~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
+... +++++++||++|.|+++++++|...+..
T Consensus 181 ~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 181 AKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 5554 3689999999999999999999988753
No 195
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.95 E-value=6e-10 Score=78.75 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=47.8
Q ss_pred CceeccchhHHhhhhhhhhc---------CCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYR---------GAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASD--NVNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~---------~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~ 68 (144)
+||||||+.+|....+.+++ ++|++++|++++... +... ..|+..+...... ..|+++|+||+|+.+
T Consensus 87 ~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 87 NIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp EEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred EEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 48999999776555444443 789999999987644 3333 3566666554332 248999999999864
Q ss_pred Cccc
Q 032243 69 NKVV 72 (144)
Q Consensus 69 ~~~~ 72 (144)
....
T Consensus 166 ~~~~ 169 (262)
T 3def_A 166 PDEL 169 (262)
T ss_dssp STTC
T ss_pred CCCc
Confidence 4333
No 196
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=1.9e-10 Score=85.93 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=32.4
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHH
Q 032243 54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 104 (144)
..|+++++||.|+. ... ............+.+++++||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~-~~~-~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAA-SDE-QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGS-CHH-HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCcccc-chH-HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 38999999999985 211 11222222222367899999999988876543
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.92 E-value=1.1e-10 Score=84.35 Aligned_cols=107 Identities=19% Similarity=0.181 Sum_probs=58.7
Q ss_pred Cceeccch-------hHHhhhhh-------hhhcC-------------CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Q 032243 1 MQWDTAGQ-------ERFRTITS-------SYYRG-------------AHGIIIVYDVTDQESFNNVKQWLNEIDRYASD 53 (144)
Q Consensus 1 qi~Dt~G~-------~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 53 (144)
++|||+|+ +++..+.. .++.. +++++++.+.+.. +++.+.. ..+.... .
T Consensus 79 tv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~-~ 154 (301)
T 2qnr_A 79 TVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIH-N 154 (301)
T ss_dssp EEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHT-T
T ss_pred chhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHH-h
Confidence 37999998 55555554 44433 3445555554321 2322221 2222222 3
Q ss_pred CCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 54 NVNKLLVGNKCDLTANKVV--SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
..++++|+||.|+....++ ..+++..++...+++++++||+++ |++++|..+.+.+..
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 5799999999998654332 134667778888999999999999 999999999988864
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.89 E-value=2e-09 Score=78.93 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=61.5
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH--HHHH
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ETAK 78 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~ 78 (144)
.||||+|...+.. .....+|++++|+|.+....+..+.. .. . ..|.++|+||+|+.+...... .+..
T Consensus 152 ~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~---~~p~ivv~NK~Dl~~~~~~~~~~~~l~ 220 (341)
T 2p67_A 152 VIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL--M---EVADLIVINKDDGDNHTNVAIARHMYE 220 (341)
T ss_dssp EEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH--H---HHCSEEEECCCCTTCHHHHHHHHHHHH
T ss_pred EEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h---cccCEEEEECCCCCChHHHHHHHHHHH
Confidence 3799999654433 24688999999999875432211111 11 1 257899999999854222110 1111
Q ss_pred HHHHHc-------CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 79 AFADEI-------GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 79 ~~~~~~-------~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
...... ..+++++||++|.|++++++.|...+.
T Consensus 221 ~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 221 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111122 346899999999999999999998765
No 199
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.85 E-value=4.4e-10 Score=82.67 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=64.2
Q ss_pred Cceeccch-------------hHHhhhhhhhhcCCCEEEE-EEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 1 MQWDTAGQ-------------ERFRTITSSYYRGAHGIII-VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 1 qi~Dt~G~-------------~~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
.||||||. +.+..+...|+.+.+.+++ |+|.+..-.-.+...++ ....+...|+++|+||.|+
T Consensus 133 ~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~---~~~~~~~~~~i~V~NK~Dl 209 (353)
T 2x2e_A 133 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA---KEVDPQGQRTIGVITKLDL 209 (353)
T ss_dssp EEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH---HHHCTTCTTEEEEEECGGG
T ss_pred EEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH---HHhCcCCCceEEEeccccc
Confidence 38999995 2567788888877665555 55554321111111222 2233346899999999998
Q ss_pred CCCcccCHHHHHHHHH--HcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243 67 TANKVVSYETAKAFAD--EIGI-PFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 67 ~~~~~~~~~~~~~~~~--~~~~-~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
.+.............. ..++ +++.+||+++.|++++++.+...
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 210 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp SCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred cCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 6543311211110000 1122 56789999999999999988774
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.84 E-value=2.4e-08 Score=77.42 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=47.9
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+|+||||+..|..-....+.-+|++|+|+|+.+----.. ...+.....+ ++|.++++||+|..
T Consensus 103 NlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~---~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 103 NLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMR---ATPVMTFVNKMDRE 165 (548)
T ss_dssp EEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHT---TCCEEEEEECTTSC
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHh---CCceEEEEecccch
Confidence 589999999999988888999999999999876322222 2233333333 58999999999974
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.80 E-value=1.5e-08 Score=74.51 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=59.5
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
|+||+|... ......+.+|++++|+|.+.......+.. .+ . ..|.++++||+|+.+.... ......+.
T Consensus 171 liDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l--~~~~ivVlNK~Dl~~~~~~-~~~~~~l~ 238 (349)
T 2www_A 171 LIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI---I--EMADLVAVTKSDGDLIVPA-RRIQAEYV 238 (349)
T ss_dssp EEECCCC-----CHHHHHTTCSEEEEEECCC------------------C--CSCSEEEECCCSGGGHHHH-HHHHHHHH
T ss_pred EEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H--hcCCEEEEeeecCCCchhH-HHHHHHHH
Confidence 789999531 12345678999999999876432221111 11 1 3578999999998431111 11112221
Q ss_pred HH----------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 82 DE----------IGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 82 ~~----------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.. ++.+++.+||++|.|+++++++|...+..
T Consensus 239 ~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 239 SALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 11 13478999999999999999999887643
No 202
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.78 E-value=5.9e-09 Score=73.89 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=45.7
Q ss_pred CceeccchhHHhhh-------hhhh--hcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 032243 1 MQWDTAGQERFRTI-------TSSY--YRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDN--VNKLLVGNKCDLTA 68 (144)
Q Consensus 1 qi~Dt~G~~~~~~~-------~~~~--~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~ 68 (144)
+||||||+.++..+ +..+ ..++|++++|+|++.. ++... ..|+..+....... .|+++|+||+|+.+
T Consensus 90 ~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 90 NIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp EEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred EEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 48999998665422 2222 2479999999998653 23332 35666665543322 69999999999965
Q ss_pred Ccc
Q 032243 69 NKV 71 (144)
Q Consensus 69 ~~~ 71 (144)
...
T Consensus 169 ~~~ 171 (270)
T 1h65_A 169 PDG 171 (270)
T ss_dssp GGG
T ss_pred cCC
Confidence 543
No 203
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.73 E-value=4.5e-09 Score=85.14 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=51.8
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+||||||+.+|...+..++..+|++|+|+|+++..++.....|.... . ...|+++++||+|+.
T Consensus 101 ~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred EEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 48999999999999999999999999999999876666654443322 2 258999999999984
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=2.1e-09 Score=80.77 Aligned_cols=90 Identities=10% Similarity=0.128 Sum_probs=43.5
Q ss_pred hhcCCCEEEEEEeCCCH-HHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH--HHHHHHHHHcCCcEEEeec
Q 032243 18 YYRGAHGIIIVYDVTDQ-ESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ETAKAFADEIGIPFMETSA 93 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa 93 (144)
++.++++.+++|+.... .++.... .|+..+. ...|+|+|+||+|+.....+.. ..+...+...+++++++|+
T Consensus 133 l~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa 208 (418)
T 2qag_C 133 QMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPE 208 (418)
T ss_dssp CCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-
T ss_pred hccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCC
Confidence 44555543344433322 2333332 4555443 2589999999999976554433 4566677778999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 032243 94 KDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 94 ~~~~~i~~l~~~i~~~~~ 111 (144)
+++.++.++|..+...+.
T Consensus 209 ~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 209 TDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp ----------------CC
T ss_pred CCCcCHHHHHHHHHhhCC
Confidence 999999998887776543
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.68 E-value=2.2e-08 Score=78.92 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=47.6
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+|.||||+..|.......+.-+|++|+|+|+.+--.-. ....+.....+ ++|.++++||+|..
T Consensus 70 NlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~---~lp~i~~INKmDr~ 132 (638)
T 3j25_A 70 NIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM---GIPTIFFINKIDQN 132 (638)
T ss_dssp CCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH---TCSCEECCEECCSS
T ss_pred EEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEeccccc
Confidence 58999999999998888899999999999987532111 12333444444 48899999999974
No 206
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.65 E-value=1.2e-08 Score=72.27 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=60.7
Q ss_pred cchhH-HhhhhhhhhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH
Q 032243 6 AGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD 82 (144)
Q Consensus 6 ~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 82 (144)
||+.. ........+.++|++++|+|+.++.+... +. ++ ..|.++|+||+|+.+... .+....+.+
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~~ 72 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFFK 72 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHHH
Confidence 56642 23345566899999999999998765432 22 21 479999999999965311 223334455
Q ss_pred HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243 83 EIGIPFMETSAKDSTNVEQAFMAMAA 108 (144)
Q Consensus 83 ~~~~~~~~~Sa~~~~~i~~l~~~i~~ 108 (144)
..+.++ .+||.++.|++++++.+..
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 567888 9999999999999887654
No 207
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.65 E-value=1e-08 Score=79.55 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=50.6
Q ss_pred CceeccchhH-----------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243 1 MQWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 69 (144)
Q Consensus 1 qi~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 69 (144)
.||||||... |...+..++.++|++++|+|+++.........++..+... ..|+++|+||+|+...
T Consensus 157 ~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 157 SIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---EDKIRVVLNKADMVET 233 (550)
T ss_dssp EEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---GGGEEEEEECGGGSCH
T ss_pred EEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---CCCEEEEEECCCccCH
Confidence 3899999864 6677888899999999999998754444445555555332 4789999999998654
Q ss_pred c
Q 032243 70 K 70 (144)
Q Consensus 70 ~ 70 (144)
.
T Consensus 234 ~ 234 (550)
T 2qpt_A 234 Q 234 (550)
T ss_dssp H
T ss_pred H
Confidence 3
No 208
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=8.1e-09 Score=74.65 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=63.1
Q ss_pred HHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCC
Q 032243 10 RFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADEIGI 86 (144)
Q Consensus 10 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 86 (144)
|-+.+.+..+.++|.+++|+|+.++. +...+..++...... .+|.++|+||+||.+.... ..+......+..+.
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~---~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~ 151 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY 151 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC
Confidence 33445667789999999999998654 444455555444332 5889999999999654220 02334445556788
Q ss_pred cEEEeecCCCCCHHHHHH
Q 032243 87 PFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 87 ~~~~~Sa~~~~~i~~l~~ 104 (144)
+++.+||.++.|++++++
T Consensus 152 ~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp CEEECCHHHHTTCTTTGG
T ss_pred eEEEEecCCCCCHHHHHh
Confidence 999999999888776554
No 209
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.64 E-value=7.8e-09 Score=82.61 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=67.3
Q ss_pred ceeccch-------------hHHhhhhhhhh-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQ-------------ERFRTITSSYY-RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~-------------~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
|+||||. ..+..+...|+ ..+|++++|+|++....-.+...++..+. ....|+++|+||+|+.
T Consensus 154 LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKiDlv 230 (772)
T 3zvr_A 154 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLDLM 230 (772)
T ss_dssp EEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECTTSS
T ss_pred EEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCcccC
Confidence 7899994 23556667776 47899999999886432222222333332 2358999999999997
Q ss_pred CCcccCHHHHHHHHHH----cC-CcEEEeecCCCCCHHHHHHHHHHH
Q 032243 68 ANKVVSYETAKAFADE----IG-IPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 68 ~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
+....... ... .+. .+ .+++.+||++|.|++++++.+...
T Consensus 231 ~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 231 DEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred CcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 54433221 111 111 12 257789999999999999998874
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.60 E-value=1.4e-07 Score=68.97 Aligned_cols=99 Identities=10% Similarity=0.120 Sum_probs=59.7
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
|+||+|...-. ....+.+|.+++|+|....+....+... +. ..+.++++||.|+.............+.
T Consensus 152 liDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~ 220 (337)
T 2qm8_A 152 LVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAASEYR 220 (337)
T ss_dssp EEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHHHHHH
T ss_pred EEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHHHHHH
Confidence 68999964321 2335789999999998643322111111 11 1356777899997543222112222232
Q ss_pred HHc----------CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 82 DEI----------GIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 82 ~~~----------~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
... ..+++.+||+++.|++++++.|.+...
T Consensus 221 ~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 221 AALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 211 347899999999999999999988764
No 211
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.55 E-value=4.6e-07 Score=66.88 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCC
Q 032243 54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD 95 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 95 (144)
..|+++++|+.|..-........+..++...+.+++++||+.
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 489999999999632111224556667777788999999764
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.45 E-value=1.1e-06 Score=70.10 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=47.1
Q ss_pred CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
+|+||||+-.|..-....+.=+|++|+|+|+.+--... ....+...... +.|.++++||+|..
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHH---TCCEEEEEECSSST
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEcccccc
Confidence 48999999999988888899999999999987532112 22333333333 48999999999974
No 213
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.44 E-value=8e-07 Score=65.48 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=57.9
Q ss_pred hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHcCCcEEEeecCCC
Q 032243 18 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKAFADEIGIPFMETSAKDS 96 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~ 96 (144)
.+.++|.+++|++..-..+...+..++...... .+|.++|+||+||.+..... .+.........|++++.+||.++
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 368999999987764333445556665554433 47889999999996532100 11223334466889999999999
Q ss_pred CCHHHHHHHH
Q 032243 97 TNVEQAFMAM 106 (144)
Q Consensus 97 ~~i~~l~~~i 106 (144)
.|++++...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999887643
No 214
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.43 E-value=5.9e-07 Score=66.47 Aligned_cols=51 Identities=16% Similarity=0.050 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCC--CCC-cccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHH
Q 032243 54 NVNKLLVGNKCDL--TAN-KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 54 ~~p~ilv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 104 (144)
..|+++++||.|. .+. +....+.+..+++..+.+++++||+...++.++.+
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSG 254 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhch
Confidence 3799999999984 221 11224566677777789999999988655554443
No 215
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.38 E-value=3.2e-07 Score=62.82 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=45.3
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 55 VNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
.|.++++||+|+.+.......+...++... +.+++++||++|.|++++|+.+...+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 678999999998543334456666666654 4689999999999999999999887753
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.44 E-value=0.00012 Score=56.28 Aligned_cols=97 Identities=14% Similarity=0.040 Sum_probs=56.6
Q ss_pred ceeccchhHHh-hhh---hhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCcccCH
Q 032243 2 QWDTAGQERFR-TIT---SSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDLTANKVVSY 74 (144)
Q Consensus 2 i~Dt~G~~~~~-~~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~ 74 (144)
|+||||..... .++ ... +-.+|.++||+|...... .+ .....+... .|+ .+|+||.|......
T Consensus 188 IIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~-~~a~~~~~~----~~i~gvVlNK~D~~~~~g--- 257 (504)
T 2j37_W 188 IVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CE-AQAKAFKDK----VDVASVIVTKLDGHAKGG--- 257 (504)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HH-HHHHHHHHH----HCCCCEEEECTTSCCCCT---
T ss_pred EEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HH-HHHHHHHhh----cCceEEEEeCCccccchH---
Confidence 79999975321 111 111 227899999999876422 11 112222221 464 88999999753322
Q ss_pred HHHHHHHHHcCCcE------------------EEeecCCCCC-HHHHHHHHHHH
Q 032243 75 ETAKAFADEIGIPF------------------METSAKDSTN-VEQAFMAMAAS 109 (144)
Q Consensus 75 ~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~l~~~i~~~ 109 (144)
.........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 258 -~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 258 -GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp -HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred -HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1222333444443 3468888988 98888888765
No 217
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0015 Score=48.34 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=56.4
Q ss_pred CceeccchhHH--------hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--
Q 032243 1 MQWDTAGQERF--------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTA-- 68 (144)
Q Consensus 1 qi~Dt~G~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~-- 68 (144)
+|+||||..+. +.. -..++++|++++|+|.+++- .+...+...+.... ....|.++++||.|...
T Consensus 122 ~l~D~pGl~~~a~~~~~~g~~~-l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~ 198 (376)
T 4a9a_A 122 QMLDLPGIIDGAKDGRGRGKQV-IAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGIS 198 (376)
T ss_dssp EEEECGGGCCC-----CHHHHH-HHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEE
T ss_pred EEEeCCCccCCchhhhHHHHHH-HHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhh
Confidence 57999996321 111 22357899999999999863 23333333332221 12568889999999631
Q ss_pred ------CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHH
Q 032243 69 ------NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 104 (144)
Q Consensus 69 ------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 104 (144)
......++...+.....+..-++-...+...+++.+
T Consensus 199 i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 199 ITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLID 240 (376)
T ss_dssp EEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHH
T ss_pred hhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHH
Confidence 123445565555555554333333334445555444
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.84 E-value=0.00045 Score=51.52 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=21.7
Q ss_pred CceeccchhHHhh-------hhhhhhcCCCEEEEEEeCCCHH
Q 032243 1 MQWDTAGQERFRT-------ITSSYYRGAHGIIIVYDVTDQE 35 (144)
Q Consensus 1 qi~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~d~~~~~ 35 (144)
+||||||+.++.. .+..+++++|++++|+|+++.+
T Consensus 89 ~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 89 NVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp EEEECCC-----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred EEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 4899999987554 4566788999999999987643
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.55 E-value=0.024 Score=42.22 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=38.4
Q ss_pred CCcEEEEEeCCCCC---CCcccCHHHHHHHHHHcC--CcEEEeecCC---------------------CCCHHHHHHHHH
Q 032243 54 NVNKLLVGNKCDLT---ANKVVSYETAKAFADEIG--IPFMETSAKD---------------------STNVEQAFMAMA 107 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~---~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~---------------------~~~i~~l~~~i~ 107 (144)
..|+++++|+.|.. +.+. ....+..++...+ .+++++||.. +.|+..+.+...
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~-~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~ 302 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNK-YLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGY 302 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCS-SHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred cCceEEEEEecchhhcccchH-HHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 38999999999841 1122 2556666776655 7899999886 467777777665
Q ss_pred HHH
Q 032243 108 ASI 110 (144)
Q Consensus 108 ~~~ 110 (144)
+.+
T Consensus 303 ~~L 305 (392)
T 1ni3_A 303 NAL 305 (392)
T ss_dssp HHT
T ss_pred HHh
Confidence 544
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.18 E-value=0.01 Score=39.37 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=50.4
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
|+|||+.. .......+..+|.+++++..+... ..+...+..+.... ....++.+|+|+.|... .. ..+..+
T Consensus 80 iiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~~~~~ 152 (206)
T 4dzz_A 80 IVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LNVLKE 152 (206)
T ss_dssp EEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EHHHHH
T ss_pred EEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HHHHHH
Confidence 68998765 334455667799999999876543 55556566664432 22467799999998532 12 234445
Q ss_pred HHHHcCCcEE
Q 032243 80 FADEIGIPFM 89 (144)
Q Consensus 80 ~~~~~~~~~~ 89 (144)
+.+..+.+++
T Consensus 153 ~l~~~~~~vl 162 (206)
T 4dzz_A 153 SIKDTGVKAF 162 (206)
T ss_dssp HHHHHTCCBC
T ss_pred HHHHcCCcee
Confidence 5555565444
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.18 E-value=0.011 Score=44.62 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=50.2
Q ss_pred ceeccchhH-----Hhhhhh-hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQER-----FRTITS-SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~-----~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||+|... ...+.. ......|.++||+|...-.. .......+... -.+..+|+||.|.... .-
T Consensus 187 IIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~---~~i~gVIlTKlD~~~~----gG 256 (443)
T 3dm5_A 187 IVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA---TPIGSIIVTKLDGSAK----GG 256 (443)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS---CTTEEEEEECCSSCSS----HH
T ss_pred EEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh---CCCeEEEEECCCCccc----cc
Confidence 689999532 111111 11336899999999875322 11222233222 2456799999997432 23
Q ss_pred HHHHHHHHcCCcEEEeecCCCCCHH
Q 032243 76 TAKAFADEIGIPFMETSAKDSTNVE 100 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~Sa~~~~~i~ 100 (144)
.+..+....+.|+..++. |++++
T Consensus 257 ~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 257 GALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp HHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred HHHHHHHHHCCCEEEEEc--CCChH
Confidence 445566677889888875 54443
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.75 E-value=0.027 Score=40.24 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=52.7
Q ss_pred ceeccchhH--Hhh-hhh-----hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc
Q 032243 2 QWDTAGQER--FRT-ITS-----SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV 72 (144)
Q Consensus 2 i~Dt~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~ 72 (144)
|+||||... ... +.. ..+..+|.+++|+|.... .+.......+.. ..+ ..+|+||.|....
T Consensus 185 iIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~~~--- 254 (297)
T 1j8m_F 185 IVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGTAK--- 254 (297)
T ss_dssp EEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGCTT---
T ss_pred EEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCCcc---
Confidence 689999765 211 221 124478999999998642 112222222222 244 7789999996422
Q ss_pred CHHHHHHHHHHcCCcEEEeecCCCCCHHHH
Q 032243 73 SYETAKAFADEIGIPFMETSAKDSTNVEQA 102 (144)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 102 (144)
...+..+....+.|+..++ +|++++++
T Consensus 255 -~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 255 -GGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp -HHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred -hHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 3345567777888988877 56666543
No 223
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.32 E-value=0.22 Score=33.77 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=54.2
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
|+|||+.. .......+..+|.+++++..+ ..+...+..++..+.........+.+|+|+.+... .... ..+.
T Consensus 123 iiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~---~~~~ 194 (245)
T 3ea0_A 123 IVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS---DEIE 194 (245)
T ss_dssp EEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---HHHH
T ss_pred EEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---HHHH
Confidence 67888754 234455677899999999864 56677777777777655433456789999998532 2223 2344
Q ss_pred HHcCCcEEEee
Q 032243 82 DEIGIPFMETS 92 (144)
Q Consensus 82 ~~~~~~~~~~S 92 (144)
+.++.+++.+-
T Consensus 195 ~~~~~~v~~~i 205 (245)
T 3ea0_A 195 KVIGRPISKRI 205 (245)
T ss_dssp HHHTSCEEEEE
T ss_pred HHhCCCeEEEC
Confidence 55677766553
No 224
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.02 E-value=0.21 Score=33.47 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=50.5
Q ss_pred ceeccch-hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243 2 QWDTAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 80 (144)
Q Consensus 2 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 80 (144)
|+|||+. .. ......+..+|.+|+++..+ ..++..+...+..+.... ..++.+|+|+.|..... . ..+....
T Consensus 72 iiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~-~-~~~~~~~ 144 (209)
T 3cwq_A 72 VIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK-D-GDEARQL 144 (209)
T ss_dssp EEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC-H-HHHHHHH
T ss_pred EEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch-H-HHHHHHH
Confidence 6788876 32 23345677899999999865 455666666666665533 35688999999863201 1 3444455
Q ss_pred HHHcCCcEE
Q 032243 81 ADEIGIPFM 89 (144)
Q Consensus 81 ~~~~~~~~~ 89 (144)
.+..+.+++
T Consensus 145 l~~~g~~v~ 153 (209)
T 3cwq_A 145 LTTAGLPLF 153 (209)
T ss_dssp HHHTTCCBC
T ss_pred HHHcCCchh
Confidence 555665443
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.91 E-value=0.076 Score=40.03 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=42.6
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCH
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV 99 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 99 (144)
..|.++||+|...-.. .......+.... .+..+|+||.|.... .-.+.......+.|+..++. |+++
T Consensus 211 ~pd~vlLVlDa~~gq~---a~~~a~~f~~~~---~~~gVIlTKlD~~a~----~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 211 KPDDVILVIDASIGQK---AYDLASRFHQAS---PIGSVIITKMDGTAK----GGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp CCSEEEEEEEGGGGGG---GHHHHHHHHHHC---SSEEEEEECGGGCSC----HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred CCcceEEEEeCccchH---HHHHHHHHhccc---CCcEEEEeccccccc----chHHHHHHHHHCCCEEEEEC--CCCh
Confidence 5699999999875322 222233333322 467899999996422 33455666677899888885 5554
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.94 E-value=0.46 Score=35.76 Aligned_cols=80 Identities=20% Similarity=0.127 Sum_probs=44.7
Q ss_pred ceeccchhHHh----hhhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCCcccC
Q 032243 2 QWDTAGQERFR----TITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNV-N-KLLVGNKCDLTANKVVS 73 (144)
Q Consensus 2 i~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~Dl~~~~~~~ 73 (144)
|+||||..... ...... +..+|.++||+|..... + ..... ..... .. | ..+|+||.|....
T Consensus 185 IIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~---~~~~~-~~~~i~gvVlnK~D~~~~---- 253 (432)
T 2v3c_C 185 IIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQA---KAFKE-AVGEIGSIIVTKLDGSAK---- 253 (432)
T ss_dssp EEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHH---HHHHT-TSCSCEEEEEECSSSCST----
T ss_pred EEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHH---HHHhh-cccCCeEEEEeCCCCccc----
Confidence 78999965321 111111 23689999999986532 1 11212 22222 24 5 7899999997432
Q ss_pred HHHHHHHHHHcCCcEEEee
Q 032243 74 YETAKAFADEIGIPFMETS 92 (144)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~S 92 (144)
...+..+....+.++..++
T Consensus 254 ~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 254 GGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp THHHHHHHHHSSCCEEEEC
T ss_pred hHHHHHHHHHHCCCEEEee
Confidence 1233446666777766553
No 227
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=93.51 E-value=0.43 Score=32.84 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=38.3
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH---HHhcCCCCcEE-EEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKL-LVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~p~i-lv~nK~Dl~ 67 (144)
|+|||+.... .....+..+|.+|+++..+. .++..+..++..+ ........+++ +|+|+.|..
T Consensus 116 iiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 116 LLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp EEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred EEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 6899876432 22344567999999998764 3444444444443 32222345664 889999853
No 228
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.98 E-value=1.1 Score=31.63 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=48.6
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEE-EEEeCCCCCCCcccCHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKL-LVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i-lv~nK~Dl~~~~~~~~~~~~~ 79 (144)
|+||++..... .....+..+|.+++++..+ ..++..+..++..+..... ...+++ +|+|+.+.. .....
T Consensus 161 iiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~~~~~ 231 (307)
T 3end_A 161 IFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEVDR 231 (307)
T ss_dssp EEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHHHH
T ss_pred EEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------HHHHH
Confidence 57887643221 1234567899999999764 5566767666666654321 245544 899999831 23445
Q ss_pred HHHHcCCcEEE
Q 032243 80 FADEIGIPFME 90 (144)
Q Consensus 80 ~~~~~~~~~~~ 90 (144)
+.+..+.+++.
T Consensus 232 ~~~~~g~~v~~ 242 (307)
T 3end_A 232 FCKETNFRRLA 242 (307)
T ss_dssp HHHHHTCCEEE
T ss_pred HHHHcCCCcee
Confidence 55566665543
No 229
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.96 E-value=1 Score=30.22 Aligned_cols=61 Identities=8% Similarity=-0.062 Sum_probs=41.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
|+|+|+... ......+..+|.+++++..+ ..+...+...+..+.... ....-+|+|+.+..
T Consensus 116 iiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 116 LIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRS 176 (237)
T ss_dssp EEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSC
T ss_pred EEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC--CceEEEEEecCCcc
Confidence 678887543 33455678899999999764 456666666666665442 24567889999853
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.96 E-value=0.0046 Score=45.58 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=50.4
Q ss_pred ceeccchhHHhh--------hhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 2 QWDTAGQERFRT--------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 2 i~Dt~G~~~~~~--------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
++||||...... ....++ +..|.++++++....-.+..+.. +........|+++++||.|......
T Consensus 216 liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~ 291 (369)
T 3ec1_A 216 LYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTK 291 (369)
T ss_dssp EEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred EEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccccc
Confidence 789999632211 122222 67899999998743211111110 1111223579999999999864433
Q ss_pred cCHHHHHHHHHHcCCcEEEeecCCCCC
Q 032243 72 VSYETAKAFADEIGIPFMETSAKDSTN 98 (144)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 98 (144)
. ......+.+..+..+.+.++....+
T Consensus 292 ~-~~~~~~~~~~~g~~l~p~~~~~~~~ 317 (369)
T 3ec1_A 292 L-EKADSLYANQLGELLSPPSKRYAAE 317 (369)
T ss_dssp G-GGHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred H-HHHHHHHHHhcCCccCCCCchhhhh
Confidence 3 2333345556666666666654433
No 231
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.64 E-value=1.1 Score=30.70 Aligned_cols=79 Identities=9% Similarity=-0.022 Sum_probs=48.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 81 (144)
|+|+|+... ......+..+|.+|+++..+ ..+...+...+..+.... ....-+|+|+.+.... ......+.
T Consensus 115 iiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~----~~~~~~~~ 185 (263)
T 1hyq_A 115 LLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLGI----EMAKNEIE 185 (263)
T ss_dssp EEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTTH----HHHHHHHH
T ss_pred EEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC--CCeeEEEEccCCcccc----cchHHHHH
Confidence 678886543 33345567799999998764 455666666666665542 2456688999985321 13334455
Q ss_pred HHcCCcEE
Q 032243 82 DEIGIPFM 89 (144)
Q Consensus 82 ~~~~~~~~ 89 (144)
+..+.+++
T Consensus 186 ~~~~~~~~ 193 (263)
T 1hyq_A 186 AILEAKVI 193 (263)
T ss_dssp HHTTSCEE
T ss_pred HHhCCCeE
Confidence 55666543
No 232
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.38 E-value=1.2 Score=33.36 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=36.9
Q ss_pred CCcEEEEEeCCCCC-------CCcccCHHHH----HHHH----HHcC---CcEEEeec--CCCCCHHHHHHHHHHHHH
Q 032243 54 NVNKLLVGNKCDLT-------ANKVVSYETA----KAFA----DEIG---IPFMETSA--KDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~-------~~~~~~~~~~----~~~~----~~~~---~~~~~~Sa--~~~~~i~~l~~~i~~~~~ 111 (144)
..|+++|.||.|+. .-......+. ..+. ...+ -.++.+|+ ..+.|++++.+.+...+.
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 47999999999963 1111222322 2222 1222 26789999 666779999999988764
No 233
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.31 E-value=0.88 Score=31.32 Aligned_cols=60 Identities=8% Similarity=-0.018 Sum_probs=40.5
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
|+|||+.. .......+..+|.+|+++..+. .+...+..++..+.... ...++.+|+|+.+
T Consensus 149 iiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 149 VIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp EEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred EEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence 57888654 2234555677999999998754 45566666666665543 2467789999994
No 234
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.71 E-value=0.99 Score=30.40 Aligned_cols=59 Identities=14% Similarity=0.006 Sum_probs=39.8
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 65 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 65 (144)
|+|||+.... .....+..+|.+++++..+ ..++..+..+...+.... ...+.+|+|+.+
T Consensus 136 iiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~ 194 (254)
T 3kjh_A 136 VMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG--IKKVRYVINKVR 194 (254)
T ss_dssp EEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred EEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence 6788875432 3455678899999999874 556666666555444333 245788999998
No 235
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.27 E-value=0.73 Score=31.41 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=41.2
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS------DNVNKLLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl 66 (144)
|+|||+... ......+..+|.+++++..+ ..+...+..++..+..... ......+|+|+.|.
T Consensus 118 iiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 118 VCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp EEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred EEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 678887543 24456677899999999864 5566666666666543221 12467889999884
No 236
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=89.20 E-value=0.7 Score=31.87 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=46.4
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCC----Ccc-c-CH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTA----NKV-V-SY 74 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~----~~~-~-~~ 74 (144)
|+|||+...........+..+|.+|++...+. .+...+...+..+... ..+++ +|+|+.|... ... . ..
T Consensus 133 iID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~~~~~ 208 (262)
T 2ph1_A 133 LIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHKSYIFGE 208 (262)
T ss_dssp EEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCEECTTCC
T ss_pred EEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCcccccccccccc
Confidence 67888754211111112236899999987654 3445555555555433 35666 8999987411 110 0 11
Q ss_pred HHHHHHHHHcCCcEEE
Q 032243 75 ETAKAFADEIGIPFME 90 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~ 90 (144)
.....+.+..+.+++.
T Consensus 209 ~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 209 GKGESLAKKYNIGFFT 224 (262)
T ss_dssp CCHHHHHHHTTCSEEE
T ss_pred cHHHHHHHHcCCCeEE
Confidence 1234456667777664
No 237
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=88.77 E-value=0.0063 Score=44.85 Aligned_cols=88 Identities=7% Similarity=0.034 Sum_probs=46.5
Q ss_pred ceeccchhHHhh--------hhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243 2 QWDTAGQERFRT--------ITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 71 (144)
Q Consensus 2 i~Dt~G~~~~~~--------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 71 (144)
++||||...... ....+ ....+.++++++....-.+..+.. +........|+++++||.|......
T Consensus 215 liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 215 LYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp EEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred EEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc
Confidence 789999633221 11222 256788999998742211111100 1111223579999999999864433
Q ss_pred cCHHHHHHHHHHcCCcEEEeecC
Q 032243 72 VSYETAKAFADEIGIPFMETSAK 94 (144)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~Sa~ 94 (144)
. ......+.+..+..+.+.++.
T Consensus 291 ~-~~~~~~~~~~~g~~l~p~~~~ 312 (368)
T 3h2y_A 291 L-EKADELYKNHAGDLLSPPTPE 312 (368)
T ss_dssp H-HHHHHHHHHHBTTTBCSSCHH
T ss_pred H-HHHHHHHHHHhCCccCCCchh
Confidence 2 333344455566555555543
No 238
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.17 E-value=2.7 Score=29.30 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=35.5
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH---HHhcCCCCcE-EEEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNK-LLVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~p~-ilv~nK~Dl 66 (144)
|+|||+..... ....+..+|.+|+++..+. .+...+...+..+ ........++ -+|.|+.|.
T Consensus 159 iiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 159 IIDTVPTPSVY--TNNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp EEEECSSCSHH--HHHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred EEECCCCccHH--HHHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 57888754322 1233445999999997643 3344444443333 2222234564 488999986
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=86.09 E-value=3 Score=29.97 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=39.8
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 100 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 100 (144)
.+|.+++|++.... .+.+.. +......-...=+|+||.|-... .-.+..+....+.|+..+. .|++++
T Consensus 227 ~~d~vllVl~a~~~--~~~l~~----~~~~~~~~~i~GvVltk~d~~~~----~g~~~~~~~~~~~Pi~~i~--~Ge~~~ 294 (320)
T 1zu4_A 227 APHEVLLVIDATTG--QNGVIQ----AEEFSKVADVSGIILTKMDSTSK----GGIGLAIKELLNIPIKMIG--VGEKVD 294 (320)
T ss_dssp CCSEEEEEEEGGGT--HHHHHH----HHHHTTTSCCCEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred CCceEEEEEECCCc--HHHHHH----HHHHhhcCCCcEEEEeCCCCCCc----hhHHHHHHHHHCcCEEEEe--CCCCcc
Confidence 47899999998732 333332 22222211234578999996322 1245566677888887776 444444
Q ss_pred H
Q 032243 101 Q 101 (144)
Q Consensus 101 ~ 101 (144)
+
T Consensus 295 d 295 (320)
T 1zu4_A 295 D 295 (320)
T ss_dssp C
T ss_pred c
Confidence 3
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.55 E-value=2.3 Score=30.40 Aligned_cols=69 Identities=25% Similarity=0.227 Sum_probs=40.7
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 100 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 100 (144)
..|.+++|+|.... .+.+.. ...+.... ...-+|+||.|-... .-.+..+....+.|+..++. |+.++
T Consensus 222 ~p~~vllVlda~t~--~~~l~~-a~~~~~~~---~i~gvVlTk~D~~~~----gG~~l~~~~~~~~Pi~~i~~--Ge~~~ 289 (306)
T 1vma_A 222 APHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTGIILTKLDGTAK----GGITLAIARELGIPIKFIGV--GEKAE 289 (306)
T ss_dssp CCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEEC--SSSGG
T ss_pred CCcEEEEEEECCCC--HHHHHH-HHHHHhcC---CCCEEEEeCCCCccc----hHHHHHHHHHHCCCEEEEeC--CCChh
Confidence 47899999998632 233322 22232221 234677899996322 22366777888999888874 44444
Q ss_pred H
Q 032243 101 Q 101 (144)
Q Consensus 101 ~ 101 (144)
+
T Consensus 290 d 290 (306)
T 1vma_A 290 D 290 (306)
T ss_dssp G
T ss_pred h
Confidence 3
No 241
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.91 E-value=1.6 Score=31.50 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=43.0
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 100 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 100 (144)
..|-.++++|.... .++......+.... ....+++||.|-... .-.+.......+.|+..++ +|++++
T Consensus 241 ~~de~llvLDa~t~---~~~~~~~~~~~~~~---~it~iilTKlD~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 241 KPNLVIFVGDALAG---NAIVEQARQFNEAV---KIDGIILTKLDADAR----GGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp CCSEEEEEEEGGGT---THHHHHHHHHHHHS---CCCEEEEECGGGCSC----CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred cCCCCEEEEecHHH---HHHHHHHHHHHHhc---CCCEEEEeCcCCccc----hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 47889999996543 23333333343322 345888999995321 2234567777889988888 666665
Q ss_pred HH
Q 032243 101 QA 102 (144)
Q Consensus 101 ~l 102 (144)
++
T Consensus 309 dl 310 (328)
T 3e70_C 309 DL 310 (328)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 242
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=83.55 E-value=0.52 Score=35.44 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=32.1
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH----HHHcCCcEEEeecC
Q 032243 24 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF----ADEIGIPFMETSAK 94 (144)
Q Consensus 24 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~ 94 (144)
+++|+.|....-+..++ .++..+ . ...|+++|.||+|..++.++ ...... ....|++++.+|..
T Consensus 151 ~v~fI~d~~~~l~~~Di-eilk~L---~-~~~~vI~Vi~KtD~Lt~~E~--~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL-VTMKKL---D-SKVNIIPIIAKADAISKSEL--TKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEECCCC---CHHHH-HHHHHT---C-SCSEEEEEESCGGGSCHHHH--HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEEEEeCCCCCCCHHHH-HHHHHH---h-hCCCEEEEEcchhccchHHH--HHHHHHHHHHHHHcCCcEEecCCC
Confidence 35666666543322221 222222 2 46899999999998654432 122122 22346777777753
No 243
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.42 E-value=3.3 Score=29.29 Aligned_cols=68 Identities=21% Similarity=0.124 Sum_probs=36.7
Q ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243 21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 100 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 100 (144)
..|.+++|+|.... .+.+ .....+.... ...-+|+||.|.... .-.+..+....+.|+..++ .|++++
T Consensus 210 ~~~~~~lv~~~~~~--~~~~-~~~~~~~~~~---~i~givlnk~d~~~~----~g~~~~~~~~~~~pi~~i~--~g~~~~ 277 (295)
T 1ls1_A 210 GPDEVLLVLDAMTG--QEAL-SVARAFDEKV---GVTGLVLTKLDGDAR----GGAALSARHVTGKPIYFAG--VSEKPE 277 (295)
T ss_dssp CCSEEEEEEEGGGT--HHHH-HHHHHHHHHT---CCCEEEEECGGGCSS----CHHHHHHHHHHCCCEEEEC--------
T ss_pred CCCEEEEEEeCCCc--HHHH-HHHHHHhhcC---CCCEEEEECCCCCcc----HHHHHHHHHHHCcCEEEEe--CCCCcc
Confidence 57889999997632 2222 2122222211 234678999996422 2345567777889988877 444454
No 244
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=82.65 E-value=7.2 Score=29.25 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=41.7
Q ss_pred ceeccchhHHhh-hhh-----hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccCH
Q 032243 2 QWDTAGQERFRT-ITS-----SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVSY 74 (144)
Q Consensus 2 i~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~ 74 (144)
|+||||...+.. +.. ..+...|.+++|+|...... .......+... .+ .-+|+||.|.....
T Consensus 188 IIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~----l~i~gvVlnK~D~~~~~---- 256 (433)
T 2xxa_A 188 LVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA----LPLTGVVLTKVDGDARG---- 256 (433)
T ss_dssp EEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH----SCCCCEEEECTTSSSCC----
T ss_pred EEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc----CCCeEEEEecCCCCccH----
Confidence 689999643321 111 12447899999999864321 11222222221 33 35789999974321
Q ss_pred HHHHHHHHHcCCcEEEe
Q 032243 75 ETAKAFADEIGIPFMET 91 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~~ 91 (144)
..+..+....+.|+..+
T Consensus 257 g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 GAALSIRHITGKPIKFL 273 (433)
T ss_dssp THHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHHCCCeEEE
Confidence 13334555566654433
No 245
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=82.24 E-value=3.2 Score=31.30 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=33.4
Q ss_pred Cceeccchh--HHhhhh--------hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 032243 1 MQWDTAGQE--RFRTIT--------SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY 50 (144)
Q Consensus 1 qi~Dt~G~~--~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 50 (144)
++||..|.+ +++..+ ..++....+.++|+|.++. +......|...+...
T Consensus 90 ~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 90 EFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp GGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 379999983 344444 6677778999999999887 344455565555443
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.17 E-value=5.1 Score=30.06 Aligned_cols=81 Identities=20% Similarity=0.135 Sum_probs=44.4
Q ss_pred ceeccchhHHhh-hhh-----hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERFRT-ITS-----SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|+||||...... +.. ..+-..|.+++|+|.... .+.......+.... ...-+|+||.|.... .-
T Consensus 185 IIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l---~i~GVIlTKlD~~~~----~g 254 (425)
T 2ffh_A 185 LVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV---GVTGLVLTKLDGDAR----GG 254 (425)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT---CCCEEEEESGGGCSS----CH
T ss_pred EEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC---CceEEEEeCcCCccc----HH
Confidence 689998643211 111 112258999999997632 22222222232221 235678999996322 12
Q ss_pred HHHHHHHHcCCcEEEee
Q 032243 76 TAKAFADEIGIPFMETS 92 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~S 92 (144)
.+.......+.|+..+.
T Consensus 255 ~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 255 AALSARHVTGKPIYFAG 271 (425)
T ss_dssp HHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHCCCEEEEe
Confidence 34456667788877766
No 247
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=81.34 E-value=1.9 Score=30.14 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=22.3
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD 33 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 33 (144)
|+|||+.. .......+..+|.+|+++..+.
T Consensus 108 iiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 108 LIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp EEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred EEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 67888764 3445666788999999998753
No 248
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=79.82 E-value=7.6 Score=28.15 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=25.0
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQW 43 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 43 (144)
|+|||... .......+..+|.+|+++..+ ..++..+...
T Consensus 158 IID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~~l 196 (361)
T 3pg5_A 158 FFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFGNL 196 (361)
T ss_dssp EEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHHHH
T ss_pred EEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHHHH
Confidence 67888643 233455667799999999864 4455444433
No 249
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=79.43 E-value=12 Score=25.38 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=46.6
Q ss_pred ceeccchhHHhhhhh-hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcE-EEEEeCCCCCCCcccCHHHHH
Q 032243 2 QWDTAGQERFRTITS-SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNK-LLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~-ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
|+||+|......+.. .....+|.+++++..+ ..++..+..++..+..... .+.++ -+|.|+.+.. .......
T Consensus 120 iiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~~~ 194 (269)
T 1cp2_A 120 FYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEYELLD 194 (269)
T ss_dssp EEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCHHHHH
T ss_pred EEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhHHHHH
Confidence 678887532221111 1124689999998764 5566666666666654432 13443 6789998631 1234445
Q ss_pred HHHHHcCCcEE
Q 032243 79 AFADEIGIPFM 89 (144)
Q Consensus 79 ~~~~~~~~~~~ 89 (144)
.+.+..+.+++
T Consensus 195 ~l~~~~~~~v~ 205 (269)
T 1cp2_A 195 AFAKELGSQLI 205 (269)
T ss_dssp HHHHHHTCCEE
T ss_pred HHHHHcCCccc
Confidence 55566666544
No 250
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=78.35 E-value=2.6 Score=33.07 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=29.4
Q ss_pred HHhhhhhhhhcCCCEE-EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243 10 RFRTITSSYYRGAHGI-IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 68 (144)
Q Consensus 10 ~~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 68 (144)
....+...|+.+...+ +++.+.+....-.....+.. .......+.++|+||.|+..
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~---~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQ---EVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHH---HHCSSCCSEEEEEECGGGSS
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHH---HHhhcCCceEEEecchhhcC
Confidence 4555677776655444 44444332111111222222 23333578999999999853
No 251
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=77.98 E-value=1.7 Score=30.33 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=35.6
Q ss_pred cCCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH--HHHHHHHHHcCCcEEE
Q 032243 20 RGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ETAKAFADEIGIPFME 90 (144)
Q Consensus 20 ~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (144)
.+++++++++|... .-+-.+ ...+..+. .. .++++|++|.|.....+... ..+.......++.+++
T Consensus 110 aRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 110 TRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp CSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred heeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 35789999998542 211122 12223332 22 79999999999865433211 1223334455666554
No 252
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=77.58 E-value=2.5 Score=29.42 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=36.3
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDL 66 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl 66 (144)
|+|||+...... .......+|.+++|+.... .+...+...+..+... ..+++ +|+|+.|.
T Consensus 196 IIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 196 IIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT---GAKLLGVVLNRMPK 256 (271)
T ss_dssp EEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT---TCEEEEEEEEEECC
T ss_pred EEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEeCCcC
Confidence 678887532211 1233456899999998754 3445555555555432 35555 88999985
No 253
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=77.52 E-value=4.9 Score=29.62 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243 54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 111 (144)
..|++++.||+|... .++...+. ..-.++++|+..+.|++.+.+.+.+.+.
T Consensus 249 ~~p~i~v~nKid~~~-----~eele~l~--~~~~~~~is~~~e~gLd~Li~~~y~~L~ 299 (376)
T 4a9a_A 249 YMPAIYVLNKIDSLS-----IEELELLY--RIPNAVPISSGQDWNLDELLQVMWDRLN 299 (376)
T ss_dssp EECEEEEEECGGGSC-----HHHHHHHT--TSTTEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ccceEEEEecccccC-----HHHHHHHh--cccchhhhhhhhcccchhHHHHHHHHcC
Confidence 479999999999632 33332222 1235789999999999999999888874
No 254
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=76.65 E-value=8.2 Score=27.09 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=38.1
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
|+|||+...... .......+|++|+|+.... .+...+...+..+.... ....-+|+|+.|..
T Consensus 206 IIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 206 LIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG--IPVKGVILNSIFRR 267 (286)
T ss_dssp EEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT--CCCCEEEEEEECCC
T ss_pred EEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC--CCEEEEEEcCcccc
Confidence 678887542211 2334567999999998754 33455555555554443 23456789999863
No 255
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=72.91 E-value=5.4 Score=30.67 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=39.3
Q ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHH
Q 032243 22 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 101 (144)
Q Consensus 22 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 101 (144)
.+-++|++|.+.-. + .......+.... -...+|+||.|-.. + .-.+..+....+.++..+. +|+++++
T Consensus 412 P~evLLvLDattGq--~-al~~ak~f~~~~---~itgvIlTKLD~ta-k---gG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 412 PHEVMLTIDASTGQ--N-AVSQAKLFHEAV---GLTGITLTKLDGTA-K---GGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp SSEEEEEEEGGGTH--H-HHHHHHHHHHHT---CCSEEEEECGGGCS-C---CTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred CCeeEEEecCcccH--H-HHHHHHHHHhhc---CCCEEEEEcCCCcc-c---ccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 56789999965421 1 112233333322 23467899999521 1 2245566777788888766 5555554
Q ss_pred H
Q 032243 102 A 102 (144)
Q Consensus 102 l 102 (144)
+
T Consensus 480 L 480 (503)
T 2yhs_A 480 L 480 (503)
T ss_dssp E
T ss_pred c
Confidence 3
No 256
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=72.83 E-value=20 Score=24.66 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=44.6
Q ss_pred ceeccchhHHhhhh-hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCc-EEEEEeCCCCCCCcccCHHHHH
Q 032243 2 QWDTAGQERFRTIT-SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVN-KLLVGNKCDLTANKVVSYETAK 78 (144)
Q Consensus 2 i~Dt~G~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-~ilv~nK~Dl~~~~~~~~~~~~ 78 (144)
|+||+|......+. ......+|.+++++..+ ..++..+..++..+..... ...+ .-+|.|+.+.. .......
T Consensus 123 iID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~~~ 197 (289)
T 2afh_E 123 FYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----REDELII 197 (289)
T ss_dssp EEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----THHHHHH
T ss_pred EEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hHHHHHH
Confidence 67887743211111 11225689999998764 4556666555555544321 2344 45788998631 1123344
Q ss_pred HHHHHcCCcEE
Q 032243 79 AFADEIGIPFM 89 (144)
Q Consensus 79 ~~~~~~~~~~~ 89 (144)
.+.+..+.+++
T Consensus 198 ~l~~~~g~~~l 208 (289)
T 2afh_E 198 ALANKLGTQMI 208 (289)
T ss_dssp HHHHHHTSCEE
T ss_pred HHHHHcCcccc
Confidence 45555666544
No 257
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=69.99 E-value=20 Score=25.40 Aligned_cols=70 Identities=10% Similarity=0.021 Sum_probs=40.2
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCC
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 98 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 98 (144)
....+.+++++|...... +...+..+.... -..++++||.|.... .-.+.......+.|+..++ +|+.
T Consensus 218 ~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~---~~t~iivTh~d~~a~----gg~~l~i~~~~~~pi~~ig--~Ge~ 285 (304)
T 1rj9_A 218 PEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV---GLTGVIVTKLDGTAK----GGVLIPIVRTLKVPIKFVG--VGEG 285 (304)
T ss_dssp TTCCSEEEEEEETTBCTH---HHHHHHHHHHHH---CCSEEEEECTTSSCC----CTTHHHHHHHHCCCEEEEE--CSSS
T ss_pred cCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc---CCcEEEEECCccccc----ccHHHHHHHHHCCCeEEEe--CCCC
Confidence 345788889999765422 222233333222 246888999985322 1133456667788888777 4444
Q ss_pred HH
Q 032243 99 VE 100 (144)
Q Consensus 99 i~ 100 (144)
++
T Consensus 286 ~~ 287 (304)
T 1rj9_A 286 PD 287 (304)
T ss_dssp TT
T ss_pred hh
Confidence 44
No 258
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=68.31 E-value=7.1 Score=28.07 Aligned_cols=55 Identities=7% Similarity=0.035 Sum_probs=38.9
Q ss_pred HHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243 48 DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 109 (144)
Q Consensus 48 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 109 (144)
..+.....|+| |++|-|.. .++....++..+++++.++..+...+..+..++...
T Consensus 74 er~l~~~~P~I-Iltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 74 RKLCRPETPAI-IVTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp HHHCCTTCCCE-EECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCEE-EEeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHh
Confidence 33433456655 57777763 345677888889999999988888888877776654
No 259
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=66.74 E-value=20 Score=26.23 Aligned_cols=62 Identities=6% Similarity=0.040 Sum_probs=31.9
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHH------HHHHHHHHHHHHHhcCC-CC-cEEEEEeCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES------FNNVKQWLNEIDRYASD-NV-NKLLVGNKCD 65 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~-~~-p~ilv~nK~D 65 (144)
|+|||+... ......+..+|.+|++...+..+- +..+...+..+...... .. -++.++|+.+
T Consensus 252 IID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 252 FIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp EEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred EEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 678886543 233445668999999998753321 12222333333333211 12 1466788887
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=63.56 E-value=12 Score=26.48 Aligned_cols=81 Identities=16% Similarity=0.100 Sum_probs=44.8
Q ss_pred ceeccchhHHhh--h--hhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243 2 QWDTAGQERFRT--I--TSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 75 (144)
Q Consensus 2 i~Dt~G~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 75 (144)
|.||+|...... + ....+. ..+.+++|+|.+.. ..++..+...+.. -...-+|+||.|.... .-
T Consensus 187 IiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~----l~~~giVltk~D~~~~----~g 256 (296)
T 2px0_A 187 FVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS----VPVNQYIFTKIDETTS----LG 256 (296)
T ss_dssp EEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS----SCCCEEEEECTTTCSC----CH
T ss_pred EEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc----CCCCEEEEeCCCcccc----hh
Confidence 689998754321 1 112232 36788999987643 2334443333321 1223566799997432 22
Q ss_pred HHHHHHHHcCCcEEEee
Q 032243 76 TAKAFADEIGIPFMETS 92 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~S 92 (144)
.+.......+.|+..++
T Consensus 257 ~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 257 SVFNILAESKIGVGFMT 273 (296)
T ss_dssp HHHHHHHTCSCCCSEEC
T ss_pred HHHHHHHHHCcCEEEEE
Confidence 55566777788776655
No 261
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=56.87 E-value=25 Score=27.07 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEee--cCCCCCHHHHHHHHHHHHH
Q 032243 43 WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS--AKDSTNVEQAFMAMAASIK 111 (144)
Q Consensus 43 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~i~~~~~ 111 (144)
+..++........|+||.+|++....+.+ .+.+.++++..+..+..+. ++-|.|-.++-+.+++.+.
T Consensus 349 L~kHIen~~~fGvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~e 417 (543)
T 3do6_A 349 LRVHVENLRKFNLPVVVALNRFSTDTEKE--IAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAK 417 (543)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCTTCCHHH--HHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhc
Confidence 33344333334699999999998643322 4567778888888664433 4557788888887777653
No 262
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=55.58 E-value=22 Score=22.49 Aligned_cols=73 Identities=7% Similarity=-0.014 Sum_probs=40.4
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEE
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME 90 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (144)
..+..+|++||....-...-...++.++..+....-.+.|+.++++----.. .......++......++.+++
T Consensus 59 ~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 59 QRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp HHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEec
Confidence 3467899999999876543223344444433221113578888876543211 111245566677777875443
No 263
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=55.21 E-value=40 Score=21.92 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=32.4
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEE
Q 032243 24 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDLTANKVVSYETAKAFADEIGIPFME 90 (144)
Q Consensus 24 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (144)
.+++|.... ..+...+...+..+... ..++ -+|+|+.|... .........+.+..+.+++.
T Consensus 140 ~vi~v~~~~-~~~~~~~~~~i~~l~~~---~~~i~gvvlN~~~~~~--~~~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 140 PVILVVGVK-LGCINHAMLTAQVIQHA---GLTLAGWVANDVTPPG--KRHAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp CEEEEEECS-TTHHHHHHHHHHHHHHT---TCCEEEEEEECCSSCC--TTHHHHHHHHHHHSSSCEEE
T ss_pred CEEEEecCC-CCcHHHHHHHHHHHHHC---CCcEEEEEEeCCCCch--hhHHHHHHHHHHHcCCCEEE
Confidence 477777664 34555555555555422 3454 47899998531 12123334444456766653
No 264
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=52.95 E-value=19 Score=25.29 Aligned_cols=62 Identities=11% Similarity=-0.051 Sum_probs=34.9
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 67 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 67 (144)
|+|||+...... .......+|.+|+|+..... +...+...+..+.... ....-+|+|+.|..
T Consensus 218 IIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~~--~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 218 IVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQAG--VNIKGAILNGVIKR 279 (299)
T ss_dssp EEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHTT--CCCCCEEEEECCCC
T ss_pred EEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhCC--CCeEEEEEeCCccC
Confidence 678887543211 12234568999999986532 3344445455554432 12234778999863
No 265
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=52.78 E-value=10 Score=29.38 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243 42 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112 (144)
Q Consensus 42 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 112 (144)
++..++........|+||.+|++....+.+ .+.+.++++..|..+..+=++-|.|-.++-+.+++.+..
T Consensus 362 NL~kHien~~~fGvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 362 NLEKHIENIGKFGVPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECCTTCCHHH--HHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 344444444445799999999997533222 344555666666654444466678888998888888764
No 266
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=48.28 E-value=70 Score=22.64 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=36.4
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCcE-EEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNK-LLVGNKCDLTANKVVSYETAKAFADEIGIPFM 89 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~-ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (144)
+..+|.+|++... +..++..+..++..+...... +.++ -+|.|..+. ..+..++++..+.+++
T Consensus 184 l~aAd~viIvt~~-e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-------~~~v~~~a~~~~~~~l 248 (314)
T 3fwy_A 184 LQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-------TDEVDRFCKETNFRRL 248 (314)
T ss_dssp GGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-------CHHHHHHHHHHTCCEE
T ss_pred HhhCCeEEEEeCC-cHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc-------hhHHHHHHHHhCCeEE
Confidence 5568998888865 455666666666666544332 2333 256776653 2234456666665544
No 267
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=47.62 E-value=34 Score=24.86 Aligned_cols=30 Identities=7% Similarity=-0.068 Sum_probs=20.3
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD 33 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 33 (144)
|+|||+.... .....+..+|.+|++...+.
T Consensus 249 iiD~pp~~~~--~~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 249 LVDSGPHLDA--FLKNALASANILFTPLPPAT 278 (398)
T ss_dssp EEEECSCCSH--HHHHHHHHCSEEEEEECCSH
T ss_pred EEeCCCCccH--HHHHHHHHCCEEEEEecCch
Confidence 6788865422 23445668999999998754
No 268
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=45.94 E-value=57 Score=21.02 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=26.7
Q ss_pred CCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243 21 GAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 66 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 66 (144)
++|+++++=|+.+.. ....+..++..+... ..|+++|.-.-|.
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~---~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEA---HLPTAYVPGPQDA 75 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG---CSCEEEECCTTSC
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEECCCCCc
Confidence 799999999987654 444444455555432 3577666444453
No 269
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=42.90 E-value=29 Score=22.75 Aligned_cols=71 Identities=7% Similarity=0.075 Sum_probs=40.1
Q ss_pred hhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 032243 15 TSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 86 (144)
Q Consensus 15 ~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 86 (144)
+...+..+|++||+..--+ +..+..+.+|+....... -..+|+.+++.--=..... .....++.....++.
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~ 135 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGT 135 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTC
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCC
Confidence 4556889999999976443 456677767765322211 1368888886643322211 123445555555554
No 270
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=42.53 E-value=23 Score=23.23 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=38.6
Q ss_pred hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCc
Q 032243 16 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 87 (144)
Q Consensus 16 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (144)
...+..+|++||+...-...-.-.++.|+..+....-..+|+.++.+- .-..........+..+...+++.
T Consensus 80 ~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~-G~~~~~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 80 TSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATA-GSARHSLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE-SSSTTTTHHHHTHHHHHHHTTCE
T ss_pred HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC-CCcchhhHHHHHHHHHHHHCCCE
Confidence 444778999999988765433333455555553222246788888773 22111111012255566667753
No 271
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=41.64 E-value=29 Score=22.77 Aligned_cols=72 Identities=10% Similarity=-0.011 Sum_probs=39.7
Q ss_pred hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCc
Q 032243 15 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 87 (144)
Q Consensus 15 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (144)
+...+..+|++||+...-+..---.++.|+..+... .-..+|+.++++----.... .....++.+...+++.
T Consensus 67 ~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~ 141 (199)
T 4hs4_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAY 141 (199)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCE
T ss_pred HHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCE
Confidence 344477899999998765543222344455544331 12368888887753211111 1234556666667753
No 272
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=41.31 E-value=54 Score=20.89 Aligned_cols=73 Identities=7% Similarity=0.011 Sum_probs=37.6
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM 89 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (144)
.-+..+|++||....-.-.-...++.++..+... .....++.++++---..............+....++.++
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4467899999998865432222334444443221 123567777777543212211123445555556676443
No 273
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=40.66 E-value=46 Score=21.29 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=38.4
Q ss_pred hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243 18 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM 89 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (144)
-+..+|++||....-.-.-...++.|+..+... .....++.++++--...............+....++.++
T Consensus 67 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~ 142 (199)
T 2zki_A 67 DMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIV 142 (199)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEEC
T ss_pred HHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEe
Confidence 466799999998765432222234444443211 223567777776443211222224556666777776544
No 274
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=39.36 E-value=17 Score=23.70 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=38.4
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH-HHHHHHHHHcCCcEE
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY-ETAKAFADEIGIPFM 89 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~ 89 (144)
..+..+|++||+...-...-...++.++..+........|++++++ ..-..... .. .....+....|+.++
T Consensus 65 ~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t-gg~~~~~~-a~~~~l~~~l~~~g~~~v 136 (197)
T 2vzf_A 65 DATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT-GGSPAHVL-ALDYGLRPVLHSMGVRHV 136 (197)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE-ESSGGGGG-HHHHTHHHHHHTTTCSEE
T ss_pred HHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE-CCCcchhh-HHHHHHHHHHHHcCCEec
Confidence 3467899999998866533223344444444222223678888887 43221111 12 235556666776443
No 275
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=36.40 E-value=53 Score=20.95 Aligned_cols=48 Identities=8% Similarity=-0.054 Sum_probs=29.6
Q ss_pred hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHH---hcCCCCcEEEEEeCCC
Q 032243 18 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR---YASDNVNKLLVGNKCD 65 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D 65 (144)
-+..+|++||....-.-.....+..++..+.. ......++.++++--.
T Consensus 49 ~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~ 99 (188)
T 2ark_A 49 DVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGG 99 (188)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESS
T ss_pred HHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCC
Confidence 35678999999887643333345566666543 1223578888887543
No 276
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=34.98 E-value=98 Score=20.47 Aligned_cols=34 Identities=6% Similarity=0.071 Sum_probs=20.3
Q ss_pred eeccchh-HHhhhhhhh-hcCCCEEEEEEeCCCHHH
Q 032243 3 WDTAGQE-RFRTITSSY-YRGAHGIIIVYDVTDQES 36 (144)
Q Consensus 3 ~Dt~G~~-~~~~~~~~~-~~~~d~~i~v~d~~~~~s 36 (144)
=|+.+.. .+....... -.++|++|++=|+.+...
T Consensus 12 SDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 12 KNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEA 47 (260)
T ss_dssp ECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHH
T ss_pred eecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccC
Confidence 4666543 233332222 147999999999987543
No 277
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=34.62 E-value=64 Score=20.68 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=24.3
Q ss_pred hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 032243 18 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 61 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~ 61 (144)
.++++|++|.++|...+++-.-.+--+ ... ..+|++++-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~EiGy--A~a---lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAFXIGF--MRA---MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHHHHHH--HHH---TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCceeehhh--Hhh---CCCeEEEEE
Confidence 367899999999977665444322211 111 148888874
No 278
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.10 E-value=10 Score=23.43 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCCCCCCCcCC
Q 032243 134 PVAQKSGCCST 144 (144)
Q Consensus 134 ~~~~~~~c~~~ 144 (144)
+.+++.+|||+
T Consensus 114 ~~pkk~~C~C~ 124 (126)
T 1se9_A 114 GDPKMNKCVCS 124 (126)
T ss_dssp -----------
T ss_pred CCCCCCCceEE
Confidence 44578899985
No 279
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=31.93 E-value=43 Score=24.19 Aligned_cols=44 Identities=18% Similarity=-0.011 Sum_probs=26.3
Q ss_pred ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q 032243 2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEID 48 (144)
Q Consensus 2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 48 (144)
|+|||.... ......+..+|.+++|...+ +.+...+......+.
T Consensus 264 IID~p~~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~l~~~~~~l~ 307 (373)
T 3fkq_A 264 IVDLPFSLE--IEKLKLLSKAWRIIVVNDGS-QLSNYKFMRAYESVV 307 (373)
T ss_dssp EEECCCCCC--HHHHHHHTTCSEEEEEECCC-HHHHHHHHHHHHHHH
T ss_pred EEeCCCCCC--HHHHHHHHHCCEEEEEecCC-chHHHHHHHHHHHHH
Confidence 678874322 23345677899999998764 444444444444443
No 280
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=31.42 E-value=83 Score=18.57 Aligned_cols=17 Identities=12% Similarity=-0.148 Sum_probs=9.7
Q ss_pred CCCCHHHHHHHHHHHHH
Q 032243 95 DSTNVEQAFMAMAASIK 111 (144)
Q Consensus 95 ~~~~i~~l~~~i~~~~~ 111 (144)
.|..-.+++..+++.+.
T Consensus 109 ~G~~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 109 VGATPWSLKVEKAREIY 125 (135)
T ss_dssp ESCCCHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHh
Confidence 34455666666666554
No 281
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=31.31 E-value=63 Score=20.93 Aligned_cols=48 Identities=6% Similarity=0.040 Sum_probs=30.7
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-------------cCCCCcEEEEEeCC
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-------------ASDNVNKLLVGNKC 64 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-------------~~~~~p~ilv~nK~ 64 (144)
.-+..+|++||.+..-....--.++.|+..+... ....++++++.+--
T Consensus 69 ~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 69 DLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 3467899999999876654334466777777321 11356777776643
No 282
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=30.83 E-value=65 Score=20.91 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=39.5
Q ss_pred hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243 16 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM 89 (144)
Q Consensus 16 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (144)
...+..+|++||+...-+..---.++.++..+... .-..+|+.++++----.... .....++.+...+++.++
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~ 142 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVM 142 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEc
Confidence 44477899999998765533222334444444321 12367888887643221111 124455666666776433
No 283
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=30.55 E-value=88 Score=20.68 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=29.4
Q ss_pred HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeC
Q 032243 10 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNK 63 (144)
Q Consensus 10 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK 63 (144)
...+.++.-+.++..+|+++.-.-..+- -..| ++.... ..+.|+|+|--.
T Consensus 68 tIKrrLReRI~~Sk~vIllIs~~T~~s~--~v~w--EIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 68 TLKPRLHTRLDNSKNIILFLSSITANSR--ALRE--EMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp THHHHHHHHHHTEEEEEEECCTTCCCCH--HHHH--HHHHHTTTTCCCEEEEETT
T ss_pred HHHHHHHHHHHhcCcEEEEEecCccccc--hhHH--HHHHHHHhcCCcEEEEECC
Confidence 3444556668889999999875443331 2233 332222 346899888544
No 284
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=30.04 E-value=29 Score=22.27 Aligned_cols=70 Identities=7% Similarity=-0.006 Sum_probs=38.6
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCc
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 87 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (144)
..+..+|++||....-...-...++.|+..+... ....+|+.++++--.-.... ........+....|+.
T Consensus 68 ~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g~~-~~~~~l~~~l~~~g~~ 140 (193)
T 1rtt_A 68 EQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFGTA-RAQYHLRQTLVFLDVH 140 (193)
T ss_dssp HHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHHTCE
T ss_pred HHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCccH-HHHHHHHHHHHHcCCE
Confidence 3467899999998655432223345566655432 12357888888763321211 1234455566666653
No 285
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=29.79 E-value=83 Score=19.82 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=45.6
Q ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCH
Q 032243 20 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV 99 (144)
Q Consensus 20 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 99 (144)
.++|++.+-...+ .....+..++..++.....++++++.|.-. ..+. ...+..|...+. ..+.++
T Consensus 68 ~~~diV~lS~~~~--~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~---------~~~~-~~l~~~G~d~v~---~~~~~~ 132 (161)
T 2yxb_A 68 EDVDVIGVSILNG--AHLHLMKRLMAKLRELGADDIPVVLGGTIP---------IPDL-EPLRSLGIREIF---LPGTSL 132 (161)
T ss_dssp TTCSEEEEEESSS--CHHHHHHHHHHHHHHTTCTTSCEEEEECCC---------HHHH-HHHHHTTCCEEE---CTTCCH
T ss_pred cCCCEEEEEeech--hhHHHHHHHHHHHHhcCCCCCEEEEeCCCc---------hhcH-HHHHHCCCcEEE---CCCCCH
Confidence 3677666655443 456667777777776543357777766421 2222 245677876432 123466
Q ss_pred HHHHHHHHHHHHHh
Q 032243 100 EQAFMAMAASIKDR 113 (144)
Q Consensus 100 ~~l~~~i~~~~~~~ 113 (144)
.++.+.+.+.+...
T Consensus 133 ~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 133 GEIIEKVRKLAEEK 146 (161)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777666543
No 286
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=29.36 E-value=1.4e+02 Score=20.70 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=40.1
Q ss_pred hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH--------------HHhcCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243 14 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--------------DRYASDNVNKLLVGNKCDLTANKVVSYETAKA 79 (144)
Q Consensus 14 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~--------------~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 79 (144)
.......++|++++...+-+...+.++...-..+ ..... --+-++.+|..||.+ -.+.......
T Consensus 119 I~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~-~~a~iIGINNRnL~t-f~vdl~~t~~ 196 (258)
T 4a29_A 119 IDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALR-IGARFIGIMSRDFET-GEINKENQRK 196 (258)
T ss_dssp HHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH-TTCSEEEECSBCTTT-CCBCHHHHHH
T ss_pred HHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhc-CCCcEEEEeCCCccc-cccCHHHHHH
Confidence 3455566899999999887766555544333222 00011 124467789899843 3444555555
Q ss_pred HHHHcC
Q 032243 80 FADEIG 85 (144)
Q Consensus 80 ~~~~~~ 85 (144)
+.....
T Consensus 197 L~~~ip 202 (258)
T 4a29_A 197 LISMIP 202 (258)
T ss_dssp HHTTSC
T ss_pred HHhhCC
Confidence 555443
No 287
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=28.02 E-value=50 Score=21.34 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=40.2
Q ss_pred hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----------cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC
Q 032243 16 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----------ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG 85 (144)
Q Consensus 16 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 85 (144)
...+..+|++||....-...---.++.|+..+... .-..+|+.++.+--.. . ..........+....|
T Consensus 62 ~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g-~~~~~~~l~~~l~~~G 139 (192)
T 3fvw_A 62 REEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-S-PEEVFEDYRSLLPFIR 139 (192)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTT
T ss_pred HHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-c-hhHHHHHHHHHHHHcC
Confidence 44477899999998765543333455566665431 1235778777665432 1 1122455666777777
Q ss_pred Cc
Q 032243 86 IP 87 (144)
Q Consensus 86 ~~ 87 (144)
+.
T Consensus 140 ~~ 141 (192)
T 3fvw_A 140 MH 141 (192)
T ss_dssp CE
T ss_pred Ce
Confidence 63
No 288
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=27.66 E-value=1.1e+02 Score=19.78 Aligned_cols=16 Identities=19% Similarity=0.675 Sum_probs=10.5
Q ss_pred hhcCCCEEEEEEeCCC
Q 032243 18 YYRGAHGIIIVYDVTD 33 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~ 33 (144)
.+.++|++|.++|...
T Consensus 127 mvd~sD~liavyDg~~ 142 (181)
T 2nx2_A 127 FIDKSDGLLLLYDPEK 142 (181)
T ss_dssp HHHHSSEEEEECCTTT
T ss_pred HHHHCCEEEEEEcCCC
Confidence 3566777777777543
No 289
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=27.40 E-value=85 Score=20.17 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=28.9
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh--------cCCCCcEEEEEeC
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY--------ASDNVNKLLVGNK 63 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--------~~~~~p~ilv~nK 63 (144)
..+..+|++||.+.+-.-..--.++.|+..+... ....++++++.+-
T Consensus 47 ~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~ 101 (177)
T 3ha2_A 47 SLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVST 101 (177)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEE
T ss_pred HHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeC
Confidence 4477899999999876543333455666665221 1135677777554
No 290
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=27.31 E-value=68 Score=20.75 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=37.5
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHH----hcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEE
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR----YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME 90 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (144)
.-+..+|++||....-.-.-...++.|+..+.. ......++.++++--............+..+....++.++.
T Consensus 74 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~ 151 (211)
T 1ydg_A 74 ADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTP 151 (211)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECC
T ss_pred HHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 346679999999876542212223444444321 11235677777664332111222234555666666664443
No 291
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=27.11 E-value=64 Score=20.43 Aligned_cols=42 Identities=12% Similarity=-0.088 Sum_probs=24.8
Q ss_pred hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 032243 18 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 64 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 64 (144)
.++++|++|.++|..++++-.-..- -..... .+|++++..+-
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~Ei--GyA~A~---gkPVv~~~~~~ 116 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGMEL--GYALSQ---GKYVLLVIPDE 116 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHHHH--HHHHHT---TCEEEEEECGG
T ss_pred HHHhCCEEEEEcCCCCCCccHHHHH--HHHHHC---CCeEEEEEcCC
Confidence 3678999999998755544332221 111111 48888876543
No 292
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=26.18 E-value=1.9e+02 Score=20.97 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=35.4
Q ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEee
Q 032243 19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 92 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 92 (144)
..+.+-+++++|.+.- .+.+ .....+.... -..++++||.|-... .-....+....+.|+..+.
T Consensus 274 ~~~P~e~lLvLDpttg--lD~~-~~~~~~~~~~---g~t~iiiThlD~~~~----gG~~lsi~~~~~~pI~~ig 337 (359)
T 2og2_A 274 SGAPNEILLVLDGNTG--LNML-PQAREFNEVV---GITGLILTKLDGSAR----GGCVVSVVEELGIPVKFIG 337 (359)
T ss_dssp TTCCSEEEEEEEGGGG--GGGH-HHHHHHHHHT---CCCEEEEESCTTCSC----THHHHHHHHHHCCCEEEEE
T ss_pred hcCCCceEEEEcCCCC--CCHH-HHHHHHHHhc---CCeEEEEecCccccc----ccHHHHHHHHhCCCEEEEe
Confidence 3567788899995432 1211 1122232221 235778999885321 2344556667788887776
No 293
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=26.17 E-value=88 Score=19.98 Aligned_cols=43 Identities=2% Similarity=-0.081 Sum_probs=24.7
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 64 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 64 (144)
..+.++|++|.++|...+++-..+.- ..... ..+|++++.+-.
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~Ei--G~A~a---~gkPVi~~~~D~ 107 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEI--GVAYA---KGIPVVALYTDS 107 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHH--HHHHH---TTCCEEEECCCG
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHH--HHHHH---CCCEEEEEEcCc
Confidence 34778999999998764443332221 11112 247887775543
No 294
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=26.15 E-value=62 Score=20.26 Aligned_cols=73 Identities=8% Similarity=0.039 Sum_probs=37.0
Q ss_pred hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-----------cCCCCcEEEEEeCCCCCC-CcccCHHHHHHHHHHc
Q 032243 17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-----------ASDNVNKLLVGNKCDLTA-NKVVSYETAKAFADEI 84 (144)
Q Consensus 17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----------~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~ 84 (144)
.-+..+|++||.+..-...--..++.|+..+... .....+++++.+--.-.. ...........+....
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~ 146 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFM 146 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHc
Confidence 3467899999999876533222334444443211 012467777777332100 0011133445556666
Q ss_pred CCcEE
Q 032243 85 GIPFM 89 (144)
Q Consensus 85 ~~~~~ 89 (144)
|+.++
T Consensus 147 G~~~~ 151 (184)
T 1rli_A 147 GMSFK 151 (184)
T ss_dssp TCEEE
T ss_pred CCccc
Confidence 77544
No 295
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=25.84 E-value=81 Score=17.91 Aligned_cols=15 Identities=7% Similarity=-0.130 Sum_probs=8.2
Q ss_pred CCCEEEEEEeCCCHH
Q 032243 21 GAHGIIIVYDVTDQE 35 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~ 35 (144)
+-..+++.+....+.
T Consensus 29 ~~~~~v~f~a~wC~~ 43 (118)
T 1zma_A 29 KETATFFIGRKTCPY 43 (118)
T ss_dssp TCCEEEEEECTTCHH
T ss_pred CCeEEEEEECCCCcc
Confidence 345566666655544
No 296
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=25.20 E-value=75 Score=21.23 Aligned_cols=70 Identities=13% Similarity=0.008 Sum_probs=39.3
Q ss_pred hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243 18 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM 89 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (144)
-+..+|++||....-...-.-.++.|+..+... ...+.+++++++---- +.......+..+....|+.++
T Consensus 76 ~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v 149 (242)
T 1sqs_A 76 ELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQIL 149 (242)
T ss_dssp HHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeee
Confidence 367899999999865533223344555554221 1235677777664321 111224556667777787543
No 297
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=24.66 E-value=74 Score=18.69 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=36.7
Q ss_pred hcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243 19 YRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM 89 (144)
Q Consensus 19 ~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (144)
+..+|+++|+.......... .+..++..+... ....++.++++--.- ...............++.++
T Consensus 44 l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~-l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 44 VASKDVILLGCPAMGSEELEDSVVEPFFTDLAPK-LKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGG-CSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE
T ss_pred HhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhh-cCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc
Confidence 56789999998764321111 244445444332 235788888874331 11124556666666776544
No 298
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=22.62 E-value=18 Score=24.87 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=12.7
Q ss_pred CCCEEEEEEeCCCHHHHHHH
Q 032243 21 GAHGIIIVYDVTDQESFNNV 40 (144)
Q Consensus 21 ~~d~~i~v~d~~~~~s~~~~ 40 (144)
-..++|++|+...+.....+
T Consensus 102 viggII~~f~~p~~~~~~~i 121 (233)
T 3uc9_A 102 VMAGIILITDIRQTKPQELL 121 (233)
T ss_dssp TEEEEEEEECHHHHCGGGTH
T ss_pred hcceEEEEEeCCCcchHHHH
Confidence 34889999976555444433
No 299
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=22.19 E-value=1.4e+02 Score=21.61 Aligned_cols=66 Identities=8% Similarity=-0.051 Sum_probs=37.6
Q ss_pred hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCc
Q 032243 18 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIP 87 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~ 87 (144)
-+..+|+++|....-...-...++.++..+..... ...++.++++=-.. . . ....+..+... .++.
T Consensus 304 ~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~g~~-~-~--a~~~l~~~l~~~~g~~ 371 (414)
T 2q9u_A 304 HTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFGAFGWS-N-R--AVPDIVAELRDGCKAD 371 (414)
T ss_dssp HHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEESSS-C-C--HHHHHHHHHHHTSCCB
T ss_pred HHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEEecCCC-c-h--hHHHHHHHHHhhcCcE
Confidence 46689999999876543222234555555543322 35788877764321 1 1 24566667777 6653
No 300
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.49 E-value=1e+02 Score=18.24 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=35.4
Q ss_pred hhcCCCEEEEEEeCCCHHHH-H-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCc
Q 032243 18 YYRGAHGIIIVYDVTDQESF-N-NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 87 (144)
Q Consensus 18 ~~~~~d~~i~v~d~~~~~s~-~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (144)
-+...|+++|.........+ . .+..++..+... ....++.++++--.- . .-....+....+..|+.
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~t~g~~-~--~~a~~~l~~~l~~~G~~ 109 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFGSYGWG-D--GKWMRDFEERMNGYGCV 109 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEEEESSS-C--SHHHHHHHHHHHHTTCE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEEecCCC-C--ChHHHHHHHHHHHCCCE
Confidence 35678999999875432111 1 244444444432 335788888873321 1 11245556666666753
No 301
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=20.96 E-value=82 Score=22.52 Aligned_cols=52 Identities=6% Similarity=-0.028 Sum_probs=33.8
Q ss_pred CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243 52 SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110 (144)
Q Consensus 52 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 110 (144)
..++|++++..-... .++..+.+++.+++++.+.-.+-.=+..+..++...+
T Consensus 81 ~~~iP~IIvtrg~~p-------p~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~l 132 (312)
T 1knx_A 81 KLNPPAIILTKSFTD-------PTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQF 132 (312)
T ss_dssp TTCCSCEEEETTTCC-------CHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCC-------CHHHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHh
Confidence 346888887655432 4566778889999999877655555555555444443
No 302
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=20.67 E-value=1.7e+02 Score=19.35 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=32.1
Q ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeC
Q 032243 20 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNK 63 (144)
Q Consensus 20 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK 63 (144)
.++|++.+.++.....+...+..++..++.... .++|+++.|.=
T Consensus 142 ~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~ 186 (215)
T 3ezx_A 142 HKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAP 186 (215)
T ss_dssp TTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSS
T ss_pred cCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 468888887888887888888888888877653 24677665543
No 303
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=20.20 E-value=96 Score=19.62 Aligned_cols=70 Identities=9% Similarity=0.012 Sum_probs=38.3
Q ss_pred hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243 16 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM 89 (144)
Q Consensus 16 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (144)
..-+..+|++||+...-...--..++.|+..+.... ...|++++.+ -.. .. .........+....|+.++
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~l-~gK~~~~~~~-G~~-~~-~~~~~~l~~~l~~~G~~~~ 148 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEW-HGKPALVVSY-GGH-GG-SKCNDQLQEVLHGLKMNVI 148 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTTT-TTCEEEEEEE-ETT-TT-HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhhc-CCCEEEEEEe-CCc-ch-hhHHHHHHHHHHHCCCEEc
Confidence 345778999999998765432233455555543211 2467776654 322 11 1123445556666776444
Done!