Query 032244
Match_columns 144
No_of_seqs 109 out of 329
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 18:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_T 40S ribosomal protein S 100.0 5.5E-77 1.9E-81 459.2 11.6 141 1-142 1-142 (144)
2 2xzm_T RPS19E; ribosome, trans 100.0 1.1E-75 3.6E-80 456.4 13.0 140 3-142 6-150 (155)
3 3iz6_S 40S ribosomal protein S 100.0 2.1E-76 7.1E-81 456.7 8.7 139 4-142 6-144 (146)
4 2v7f_A RPS19, RPS19E SSU ribos 100.0 6.7E-54 2.3E-58 330.7 10.5 139 4-142 1-139 (150)
5 2pg4_A Uncharacterized protein 97.4 0.00047 1.6E-08 46.7 6.2 71 55-139 14-90 (95)
6 1r7j_A Conserved hypothetical 97.3 0.00041 1.4E-08 48.5 5.6 63 58-137 10-72 (95)
7 3g3z_A NMB1585, transcriptiona 97.2 0.0017 6E-08 45.7 7.9 66 60-139 35-106 (145)
8 2h09_A Transcriptional regulat 97.2 0.0015 5.2E-08 47.2 7.6 60 64-137 48-107 (155)
9 3oop_A LIN2960 protein; protei 97.1 0.0018 6.1E-08 45.6 7.4 65 61-139 42-112 (143)
10 1on2_A Transcriptional regulat 97.1 0.0028 9.7E-08 45.0 8.1 59 65-137 17-75 (142)
11 3ech_A MEXR, multidrug resista 97.1 0.0022 7.6E-08 45.1 7.4 65 61-139 42-112 (142)
12 3k0l_A Repressor protein; heli 97.0 0.0029 1E-07 45.7 8.1 65 61-139 51-121 (162)
13 1jgs_A Multiple antibiotic res 97.0 0.004 1.4E-07 43.2 8.3 65 61-139 39-109 (138)
14 2hr3_A Probable transcriptiona 97.0 0.003 1E-07 44.3 7.6 67 59-139 38-111 (147)
15 2gxg_A 146AA long hypothetical 97.0 0.0027 9.4E-08 44.4 7.2 64 61-139 42-111 (146)
16 3bja_A Transcriptional regulat 96.9 0.0036 1.2E-07 43.3 7.4 65 61-139 38-108 (139)
17 2frh_A SARA, staphylococcal ac 96.9 0.0024 8.1E-08 45.2 6.6 65 61-139 42-114 (127)
18 3e6m_A MARR family transcripti 96.9 0.0031 1E-07 45.5 7.2 65 61-139 58-128 (161)
19 3eco_A MEPR; mutlidrug efflux 96.9 0.0043 1.5E-07 43.3 7.7 66 60-139 35-108 (139)
20 3s2w_A Transcriptional regulat 96.9 0.004 1.4E-07 44.7 7.6 65 61-139 55-125 (159)
21 2x4h_A Hypothetical protein SS 96.9 0.0045 1.5E-07 43.7 7.7 62 61-137 18-83 (139)
22 2nyx_A Probable transcriptiona 96.9 0.0044 1.5E-07 45.2 7.8 65 61-139 50-120 (168)
23 4hbl_A Transcriptional regulat 96.9 0.003 1E-07 45.0 6.7 66 61-140 46-117 (149)
24 1sfx_A Conserved hypothetical 96.8 0.0045 1.5E-07 41.0 7.1 66 60-139 24-94 (109)
25 2rdp_A Putative transcriptiona 96.8 0.0066 2.3E-07 42.7 8.2 65 61-139 47-117 (150)
26 2qww_A Transcriptional regulat 96.8 0.0033 1.1E-07 44.6 6.5 64 61-138 46-117 (154)
27 3jw4_A Transcriptional regulat 96.8 0.0037 1.3E-07 44.3 6.7 65 61-139 46-118 (148)
28 3bro_A Transcriptional regulat 96.8 0.0072 2.5E-07 41.9 8.0 64 61-138 39-110 (141)
29 3kp7_A Transcriptional regulat 96.8 0.0062 2.1E-07 43.2 7.8 64 61-139 43-114 (151)
30 2fbi_A Probable transcriptiona 96.8 0.0035 1.2E-07 43.5 6.2 65 61-139 41-111 (142)
31 1tbx_A ORF F-93, hypothetical 96.8 0.0041 1.4E-07 41.9 6.4 70 60-139 12-84 (99)
32 2oqg_A Possible transcriptiona 96.7 0.0049 1.7E-07 42.1 6.8 63 60-138 25-91 (114)
33 2qvo_A Uncharacterized protein 96.7 0.0024 8.3E-08 43.2 5.1 68 57-139 13-88 (95)
34 3bpv_A Transcriptional regulat 96.7 0.0061 2.1E-07 42.1 7.2 66 60-139 33-104 (138)
35 2eth_A Transcriptional regulat 96.7 0.0091 3.1E-07 42.6 8.1 66 60-139 48-119 (154)
36 3hsr_A HTH-type transcriptiona 96.7 0.0034 1.2E-07 44.3 5.7 66 60-139 40-111 (140)
37 2fsw_A PG_0823 protein; alpha- 96.7 0.0037 1.3E-07 43.3 5.8 63 60-136 29-97 (107)
38 3deu_A Transcriptional regulat 96.6 0.0081 2.8E-07 44.0 7.8 65 61-139 58-129 (166)
39 2bv6_A MGRA, HTH-type transcri 96.6 0.0042 1.4E-07 43.4 5.9 64 61-138 42-111 (142)
40 2a61_A Transcriptional regulat 96.6 0.0064 2.2E-07 42.4 6.8 66 60-139 37-108 (145)
41 3cdh_A Transcriptional regulat 96.6 0.007 2.4E-07 43.0 7.0 65 61-139 48-118 (155)
42 3cuo_A Uncharacterized HTH-typ 96.5 0.0082 2.8E-07 39.7 6.6 67 60-140 28-97 (99)
43 3bj6_A Transcriptional regulat 96.5 0.0096 3.3E-07 41.9 7.3 65 61-139 45-115 (152)
44 2fa5_A Transcriptional regulat 96.5 0.013 4.4E-07 41.8 8.0 65 61-139 54-124 (162)
45 3nrv_A Putative transcriptiona 96.5 0.013 4.3E-07 41.2 7.8 65 61-139 45-115 (148)
46 2nnn_A Probable transcriptiona 96.5 0.0097 3.3E-07 41.1 7.1 65 61-139 43-113 (140)
47 2hzt_A Putative HTH-type trans 96.5 0.0061 2.1E-07 42.3 6.0 63 60-136 18-86 (107)
48 1stz_A Heat-inducible transcri 96.5 0.0092 3.2E-07 50.1 8.1 68 57-136 18-92 (338)
49 3tgn_A ADC operon repressor AD 96.5 0.011 3.7E-07 41.4 7.2 61 61-136 43-109 (146)
50 1ub9_A Hypothetical protein PH 96.4 0.008 2.7E-07 39.7 6.1 66 60-139 20-91 (100)
51 3cjn_A Transcriptional regulat 96.4 0.01 3.5E-07 42.4 7.1 65 61-139 57-127 (162)
52 4a5n_A Uncharacterized HTH-typ 96.4 0.0082 2.8E-07 44.3 6.5 64 60-137 30-99 (131)
53 2fbh_A Transcriptional regulat 96.4 0.018 6.1E-07 40.0 7.9 64 61-138 42-112 (146)
54 1lj9_A Transcriptional regulat 96.4 0.014 4.7E-07 40.7 7.3 65 61-139 34-104 (144)
55 3hrs_A Metalloregulator SCAR; 96.4 0.0096 3.3E-07 46.3 7.0 62 62-137 8-73 (214)
56 1z7u_A Hypothetical protein EF 96.4 0.0068 2.3E-07 42.4 5.6 63 60-136 26-94 (112)
57 2pex_A Transcriptional regulat 96.3 0.0053 1.8E-07 43.5 4.7 62 61-136 52-119 (153)
58 1xmk_A Double-stranded RNA-spe 96.2 0.0064 2.2E-07 41.8 4.8 60 58-132 13-76 (79)
59 1s3j_A YUSO protein; structura 96.2 0.012 4.2E-07 41.5 6.4 65 61-139 42-112 (155)
60 3u2r_A Regulatory protein MARR 96.2 0.0096 3.3E-07 43.2 5.9 65 61-139 51-123 (168)
61 3fm5_A Transcriptional regulat 96.2 0.02 6.7E-07 40.5 7.4 65 61-139 44-115 (150)
62 2f2e_A PA1607; transcription f 96.2 0.014 4.7E-07 42.9 6.7 62 60-136 28-94 (146)
63 3bdd_A Regulatory protein MARR 96.1 0.0072 2.5E-07 41.9 4.8 58 61-132 36-99 (142)
64 2o0m_A Transcriptional regulat 96.1 0.00096 3.3E-08 55.3 0.0 64 57-135 21-84 (345)
65 3df8_A Possible HXLR family tr 96.0 0.014 4.9E-07 40.9 6.0 63 60-136 31-97 (111)
66 4b8x_A SCO5413, possible MARR- 96.0 0.013 4.6E-07 42.2 5.9 65 61-139 40-112 (147)
67 1y0u_A Arsenical resistance op 96.0 0.013 4.5E-07 39.5 5.4 54 60-130 35-88 (96)
68 3nqo_A MARR-family transcripti 96.0 0.03 1E-06 41.9 7.9 65 61-139 46-118 (189)
69 1z91_A Organic hydroperoxide r 95.9 0.0066 2.3E-07 42.5 3.9 62 61-136 45-112 (147)
70 3l7w_A Putative uncharacterize 95.9 0.008 2.8E-07 42.1 4.0 68 61-139 14-88 (108)
71 3boq_A Transcriptional regulat 95.8 0.021 7E-07 40.6 6.1 65 61-139 52-123 (160)
72 3tqn_A Transcriptional regulat 95.8 0.064 2.2E-06 37.7 8.5 68 54-135 10-84 (113)
73 3f3x_A Transcriptional regulat 95.8 0.025 8.7E-07 39.5 6.4 64 61-139 42-111 (144)
74 3b73_A PHIH1 repressor-like pr 95.8 0.028 9.7E-07 40.5 6.7 63 59-133 16-78 (111)
75 2p8t_A Hypothetical protein PH 95.8 0.025 8.5E-07 45.0 6.9 55 68-137 28-82 (200)
76 2fxa_A Protease production reg 95.7 0.022 7.5E-07 43.7 6.2 65 61-139 53-123 (207)
77 2obp_A Putative DNA-binding pr 95.7 0.024 8.2E-07 40.2 5.8 62 60-135 20-91 (96)
78 1q1h_A TFE, transcription fact 95.7 0.014 4.7E-07 40.2 4.4 53 59-125 21-78 (110)
79 1yyv_A Putative transcriptiona 95.6 0.02 6.9E-07 41.5 5.5 62 61-136 40-107 (131)
80 1bja_A Transcription regulator 95.6 0.02 6.9E-07 40.7 5.1 65 58-137 18-83 (95)
81 1okr_A MECI, methicillin resis 95.5 0.023 8E-07 39.1 5.3 67 60-136 14-84 (123)
82 2y75_A HTH-type transcriptiona 95.5 0.049 1.7E-06 38.5 7.2 60 57-130 10-74 (129)
83 1hsj_A Fusion protein consisti 95.5 0.033 1.1E-06 46.6 7.0 66 61-140 409-482 (487)
84 2fbk_A Transcriptional regulat 95.4 0.029 1E-06 41.3 5.7 65 61-139 74-147 (181)
85 3neu_A LIN1836 protein; struct 95.4 0.12 4.2E-06 36.9 8.8 61 54-128 14-81 (125)
86 4aik_A Transcriptional regulat 95.2 0.13 4.4E-06 37.3 8.7 65 61-139 36-107 (151)
87 1yg2_A Gene activator APHA; vi 95.2 0.056 1.9E-06 40.6 6.9 72 61-139 7-86 (179)
88 3f8b_A Transcriptional regulat 95.2 0.027 9.3E-07 40.0 4.8 72 61-139 17-96 (116)
89 3f6v_A Possible transcriptiona 95.1 0.03 1E-06 41.7 5.1 64 60-139 62-129 (151)
90 3pqk_A Biofilm growth-associat 95.0 0.18 6.2E-06 33.9 8.5 64 60-138 27-93 (102)
91 3by6_A Predicted transcription 95.0 0.11 3.9E-06 37.2 7.8 59 54-126 12-77 (126)
92 2b0l_A GTP-sensing transcripti 95.0 0.021 7.3E-07 40.1 3.8 51 72-136 45-97 (102)
93 1u2w_A CADC repressor, cadmium 94.8 0.15 5E-06 36.0 7.8 60 60-134 46-109 (122)
94 4fx0_A Probable transcriptiona 94.8 0.081 2.8E-06 38.2 6.5 63 61-137 38-110 (148)
95 1r1u_A CZRA, repressor protein 94.5 0.16 5.3E-06 34.8 7.1 57 60-132 30-90 (106)
96 2kko_A Possible transcriptiona 94.4 0.092 3.1E-06 36.3 5.7 61 60-135 29-92 (108)
97 1fx7_A Iron-dependent represso 94.3 0.056 1.9E-06 42.0 5.0 54 70-137 22-77 (230)
98 2ek5_A Predicted transcription 94.3 0.16 5.6E-06 36.7 7.2 64 55-132 6-76 (129)
99 2jt1_A PEFI protein; solution 94.3 0.12 4.3E-06 34.9 6.1 53 57-124 5-63 (77)
100 3jth_A Transcription activator 94.2 0.18 6.2E-06 33.6 6.8 65 60-139 27-94 (98)
101 4esb_A Transcriptional regulat 94.2 0.078 2.7E-06 37.7 5.2 70 61-139 14-91 (115)
102 2htj_A P fimbrial regulatory p 93.9 0.13 4.3E-06 33.7 5.4 45 60-118 4-48 (81)
103 2wte_A CSA3; antiviral protein 93.9 0.21 7.1E-06 40.0 7.6 64 57-134 153-217 (244)
104 1xma_A Predicted transcription 93.8 0.071 2.4E-06 39.5 4.5 72 61-139 46-125 (145)
105 3f6o_A Probable transcriptiona 93.8 0.19 6.3E-06 35.1 6.4 64 60-138 22-88 (118)
106 2qq9_A Diphtheria toxin repres 93.7 0.078 2.7E-06 41.3 4.8 64 60-137 10-77 (226)
107 1v4r_A Transcriptional repress 93.7 0.065 2.2E-06 36.5 3.9 61 54-128 12-79 (102)
108 2jsc_A Transcriptional regulat 93.7 0.13 4.6E-06 36.0 5.5 55 60-130 25-83 (118)
109 3hhh_A Transcriptional regulat 93.6 0.13 4.6E-06 36.6 5.6 70 61-139 18-95 (116)
110 3ihu_A Transcriptional regulat 93.6 0.082 2.8E-06 40.4 4.7 67 55-135 18-90 (222)
111 3ic7_A Putative transcriptiona 93.5 0.067 2.3E-06 38.4 3.8 68 55-136 13-87 (126)
112 2co5_A Viral protein F93; vira 93.5 0.12 4.2E-06 36.2 5.0 45 96-140 42-89 (99)
113 2d1h_A ST1889, 109AA long hypo 93.5 0.29 9.8E-06 32.1 6.6 44 61-118 26-70 (109)
114 2esh_A Conserved hypothetical 93.3 0.064 2.2E-06 37.8 3.3 72 61-139 18-97 (118)
115 1mkm_A ICLR transcriptional re 93.3 0.36 1.2E-05 37.8 7.9 60 56-129 8-68 (249)
116 1p4x_A Staphylococcal accessor 93.3 0.2 6.7E-06 40.1 6.5 65 61-139 163-235 (250)
117 4esf_A PADR-like transcription 93.2 0.11 3.8E-06 37.0 4.6 69 61-138 16-92 (117)
118 1ku9_A Hypothetical protein MJ 93.2 0.52 1.8E-05 32.3 7.9 63 60-136 30-97 (152)
119 4ham_A LMO2241 protein; struct 93.1 0.25 8.4E-06 35.4 6.3 61 54-128 15-82 (134)
120 3l09_A Putative transcriptiona 93.1 0.098 3.3E-06 43.0 4.6 75 56-141 22-105 (266)
121 3sxy_A Transcriptional regulat 92.8 0.078 2.7E-06 40.4 3.5 65 57-135 16-86 (218)
122 2dql_A PEX protein; circadian 92.8 0.14 4.8E-06 36.3 4.6 47 93-139 51-106 (115)
123 2xrn_A HTH-type transcriptiona 92.8 0.25 8.5E-06 38.6 6.4 59 56-128 6-66 (241)
124 3cta_A Riboflavin kinase; stru 92.6 0.088 3E-06 40.7 3.4 74 52-139 9-85 (230)
125 1ylf_A RRF2 family protein; st 92.6 0.25 8.5E-06 36.1 5.7 58 58-129 16-76 (149)
126 2e1n_A PEX, period extender; c 92.5 0.16 5.6E-06 37.4 4.8 47 93-139 63-118 (138)
127 2hs5_A Putative transcriptiona 92.5 0.12 4E-06 40.4 4.0 68 54-135 29-102 (239)
128 3c7j_A Transcriptional regulat 92.4 0.13 4.3E-06 40.3 4.2 52 70-135 49-100 (237)
129 1sd4_A Penicillinase repressor 92.2 0.59 2E-05 32.0 7.1 50 61-120 15-64 (126)
130 3t8r_A Staphylococcus aureus C 91.9 0.32 1.1E-05 35.5 5.7 56 60-129 15-75 (143)
131 1r1t_A Transcriptional repress 91.6 0.44 1.5E-05 33.8 6.0 53 60-128 50-106 (122)
132 3k69_A Putative transcription 91.6 0.34 1.2E-05 36.3 5.6 55 60-128 16-74 (162)
133 2zfw_A PEX; five alpha-helices 91.4 0.18 6.1E-06 37.8 3.8 46 94-139 74-128 (148)
134 1xn7_A Hypothetical protein YH 91.4 0.37 1.3E-05 32.6 5.1 45 60-118 6-50 (78)
135 3mq0_A Transcriptional repress 91.4 0.33 1.1E-05 38.9 5.6 58 56-127 30-88 (275)
136 2lkp_A Transcriptional regulat 91.2 0.41 1.4E-05 32.9 5.3 59 61-134 37-96 (119)
137 3eet_A Putative GNTR-family tr 90.9 0.75 2.6E-05 36.8 7.4 60 54-127 30-96 (272)
138 3elk_A Putative transcriptiona 90.8 0.14 4.7E-06 36.5 2.6 67 61-136 19-93 (117)
139 1p4x_A Staphylococcal accessor 90.7 0.46 1.6E-05 37.9 5.9 65 61-139 39-111 (250)
140 3lwf_A LIN1550 protein, putati 90.2 0.69 2.4E-05 34.7 6.2 46 69-128 43-90 (159)
141 3u1d_A Uncharacterized protein 90.1 0.3 1E-05 37.2 4.1 61 61-134 34-107 (151)
142 3ri2_A Transcriptional regulat 90.1 0.37 1.3E-05 34.8 4.5 46 94-139 48-100 (123)
143 2di3_A Bacterial regulatory pr 90.0 0.18 6.1E-06 38.9 2.8 44 73-130 31-78 (239)
144 2o0y_A Transcriptional regulat 90.0 0.63 2.2E-05 36.7 6.1 59 56-128 23-82 (260)
145 1hw1_A FADR, fatty acid metabo 89.8 0.81 2.8E-05 34.8 6.4 59 55-127 9-74 (239)
146 3edp_A LIN2111 protein; APC883 89.8 0.89 3E-05 35.5 6.7 60 54-127 10-76 (236)
147 3l9f_A Putative uncharacterize 89.8 0.22 7.4E-06 39.1 3.2 65 68-138 47-119 (204)
148 3kfw_X Uncharacterized protein 89.7 1 3.5E-05 36.3 7.2 72 57-140 4-78 (247)
149 1i1g_A Transcriptional regulat 89.7 1 3.6E-05 31.5 6.5 67 60-141 8-86 (141)
150 3aaf_A Werner syndrome ATP-dep 89.6 1.5 5.1E-05 32.0 7.4 77 60-136 20-110 (134)
151 2k02_A Ferrous iron transport 89.4 0.52 1.8E-05 32.7 4.6 45 60-118 6-50 (87)
152 2g9w_A Conserved hypothetical 89.0 1.3 4.6E-05 31.3 6.7 58 61-129 14-78 (138)
153 2wv0_A YVOA, HTH-type transcri 88.9 1.5 5.2E-05 34.3 7.5 60 54-127 11-77 (243)
154 1uly_A Hypothetical protein PH 88.5 0.99 3.4E-05 34.6 6.1 66 60-140 24-105 (192)
155 3r4k_A Transcriptional regulat 88.5 0.32 1.1E-05 38.5 3.3 58 56-127 6-65 (260)
156 2heo_A Z-DNA binding protein 1 88.3 1.1 3.6E-05 28.8 5.2 46 60-119 14-60 (67)
157 2g7u_A Transcriptional regulat 87.1 0.78 2.7E-05 36.0 4.8 58 56-128 14-72 (257)
158 1p6r_A Penicillinase repressor 86.9 0.68 2.3E-05 29.9 3.7 51 61-122 14-64 (82)
159 2k4b_A Transcriptional regulat 86.9 0.75 2.6E-05 32.1 4.1 51 61-122 40-90 (99)
160 1in4_A RUVB, holliday junction 86.2 0.82 2.8E-05 36.9 4.6 53 65-132 271-324 (334)
161 2w48_A Sorbitol operon regulat 86.1 1.4 4.7E-05 35.6 5.9 50 55-118 6-56 (315)
162 2pn6_A ST1022, 150AA long hypo 85.6 1.9 6.6E-05 30.6 5.9 68 60-141 7-87 (150)
163 2rkh_A Putative APHA-like tran 85.5 0.21 7.1E-06 38.7 0.7 37 104-140 54-97 (180)
164 1xd7_A YWNA; structural genomi 85.5 0.71 2.4E-05 33.4 3.5 56 59-129 12-69 (145)
165 3bwg_A Uncharacterized HTH-typ 85.4 1.7 6E-05 33.8 6.0 58 55-126 7-71 (239)
166 3r0a_A Putative transcriptiona 84.2 3.9 0.00013 28.6 6.9 45 60-118 30-76 (123)
167 2qm3_A Predicted methyltransfe 83.4 1.5 5E-05 36.1 5.0 56 61-134 48-103 (373)
168 2cg4_A Regulatory protein ASNC 83.2 5.2 0.00018 28.4 7.3 68 60-141 12-91 (152)
169 2ia0_A Putative HTH-type trans 82.9 8.4 0.00029 28.4 8.6 68 60-141 21-106 (171)
170 2ia2_A Putative transcriptiona 82.3 0.96 3.3E-05 35.7 3.3 57 56-127 21-78 (265)
171 1lva_A Selenocysteine-specific 82.2 3.2 0.00011 32.9 6.4 98 11-124 138-255 (258)
172 3u5c_Z RP45, S31, YS23, 40S ri 79.8 0.8 2.7E-05 33.4 1.8 35 71-119 60-94 (108)
173 2zkz_A Transcriptional repress 79.7 3.4 0.00012 27.7 5.0 60 60-134 31-93 (99)
174 2dk5_A DNA-directed RNA polyme 78.7 4 0.00014 27.9 5.1 41 61-115 25-67 (91)
175 3f8m_A GNTR-family protein tra 78.5 1.2 4.1E-05 35.1 2.6 59 54-127 15-78 (248)
176 3iz6_V 40S ribosomal protein S 78.4 0.78 2.7E-05 33.4 1.4 23 97-119 73-95 (108)
177 2p4w_A Transcriptional regulat 78.4 3.1 0.00011 32.1 5.0 44 60-118 19-62 (202)
178 1olt_A Oxygen-independent copr 77.8 1.4 4.6E-05 37.6 3.0 59 67-139 379-440 (457)
179 2qlz_A Transcription factor PF 75.0 2 6.8E-05 34.2 3.0 42 60-116 16-57 (232)
180 1oyi_A Double-stranded RNA-bin 74.4 3.5 0.00012 28.3 3.8 44 60-118 21-64 (82)
181 2w25_A Probable transcriptiona 73.0 7.6 0.00026 27.5 5.5 43 60-116 11-53 (150)
182 1qbj_A Protein (double-strande 72.4 9.4 0.00032 25.6 5.6 45 60-118 14-61 (81)
183 2fu4_A Ferric uptake regulatio 72.3 5.5 0.00019 25.4 4.2 52 59-119 20-73 (83)
184 2xzm_8 RPS25E,; ribosome, tran 72.3 1.7 5.7E-05 33.2 1.9 35 70-118 63-97 (143)
185 1bm9_A RTP, TER, replication t 71.0 3.4 0.00012 30.4 3.3 34 97-130 53-96 (122)
186 2cfx_A HTH-type transcriptiona 70.8 9.3 0.00032 27.0 5.6 43 60-116 9-51 (144)
187 2p5v_A Transcriptional regulat 70.8 8.9 0.00031 27.5 5.5 67 60-141 14-94 (162)
188 3k2z_A LEXA repressor; winged 69.0 10 0.00034 28.3 5.7 42 68-123 21-63 (196)
189 3ijw_A Aminoglycoside N3-acety 68.6 1.3 4.3E-05 36.5 0.5 94 12-106 51-148 (268)
190 2ra5_A Putative transcriptiona 68.5 1.2 4.1E-05 34.9 0.4 59 55-127 18-83 (247)
191 3hhg_A Transcriptional regulat 68.2 5.7 0.00019 29.6 4.1 38 99-137 32-72 (306)
192 2ijl_A AGR_C_4647P, molybdenum 66.5 5.8 0.0002 29.1 3.7 39 98-136 52-97 (135)
193 2cyy_A Putative HTH-type trans 66.3 9.2 0.00031 27.1 4.8 67 60-141 11-89 (151)
194 1ixc_A CBNR, LYSR-type regulat 65.9 7.1 0.00024 28.9 4.2 37 99-136 30-69 (294)
195 2dbb_A Putative HTH-type trans 65.2 10 0.00035 26.7 4.8 43 60-116 13-55 (151)
196 3pfi_A Holliday junction ATP-d 64.9 3.1 0.00011 32.7 2.2 33 100-133 295-328 (338)
197 3szp_A Transcriptional regulat 64.4 6.5 0.00022 28.8 3.7 36 100-136 31-69 (291)
198 2qlz_A Transcription factor PF 63.7 9.7 0.00033 30.1 4.9 51 60-125 168-218 (232)
199 2vxz_A Pyrsv_GP04; viral prote 60.9 16 0.00054 28.3 5.4 54 52-120 7-60 (165)
200 3fxq_A LYSR type regulator of 60.9 13 0.00046 27.9 5.0 37 99-136 31-70 (305)
201 3isp_A HTH-type transcriptiona 59.9 15 0.0005 27.6 5.0 37 99-137 35-74 (303)
202 2esn_A Probable transcriptiona 59.9 11 0.00038 28.2 4.4 38 99-137 39-79 (310)
203 2qc0_A Uncharacterized protein 59.8 9.8 0.00034 31.7 4.4 49 60-123 301-349 (373)
204 1bia_A BIRA bifunctional prote 59.2 18 0.00062 29.3 5.8 57 57-127 6-63 (321)
205 2e1c_A Putative HTH-type trans 58.6 18 0.00063 26.6 5.3 67 60-141 31-109 (171)
206 1j5y_A Transcriptional regulat 56.9 22 0.00076 26.3 5.6 58 56-128 21-80 (187)
207 1qgp_A Protein (double strande 56.9 11 0.00038 24.6 3.5 45 60-118 18-65 (77)
208 1qzz_A RDMB, aclacinomycin-10- 56.1 33 0.0011 27.2 6.8 54 61-129 41-96 (374)
209 1b9m_A Protein (mode); DNA-bin 55.5 14 0.00048 28.2 4.3 33 103-135 53-92 (265)
210 3i4p_A Transcriptional regulat 53.2 21 0.00073 25.7 4.8 68 60-141 7-88 (162)
211 3fzv_A Probable transcriptiona 52.9 9 0.00031 28.5 2.8 37 100-136 34-73 (306)
212 1tw3_A COMT, carminomycin 4-O- 51.9 29 0.00099 27.4 5.8 55 61-130 44-98 (360)
213 2v1x_A ATP-dependent DNA helic 51.8 32 0.0011 30.2 6.5 76 58-133 446-534 (591)
214 3sma_A FRBF; N-acetyl transfer 51.6 5.6 0.00019 33.0 1.6 92 12-106 58-155 (286)
215 3eqx_A FIC domain containing t 49.8 20 0.0007 30.0 4.8 49 60-123 301-349 (373)
216 1z05_A Transcriptional regulat 48.9 25 0.00087 29.1 5.2 48 57-118 40-87 (429)
217 1t6s_A Conserved hypothetical 48.9 40 0.0014 25.4 5.9 51 55-122 92-146 (162)
218 3rkx_A Biotin-[acetyl-COA-carb 46.7 33 0.0011 28.0 5.5 54 60-127 7-63 (323)
219 1z6r_A MLC protein; transcript 46.0 29 0.001 28.3 5.1 45 59-117 19-63 (406)
220 2hoe_A N-acetylglucosamine kin 45.6 17 0.00059 29.6 3.6 43 60-117 24-66 (380)
221 2h9b_A HTH-type transcriptiona 45.3 4.5 0.00015 30.9 0.0 34 101-135 32-68 (312)
222 2gqq_A Leucine-responsive regu 45.2 5.1 0.00018 29.0 0.3 43 60-116 17-59 (163)
223 3i53_A O-methyltransferase; CO 44.8 62 0.0021 25.3 6.7 51 68-132 36-86 (332)
224 3mz1_A Putative transcriptiona 44.5 4.7 0.00016 29.7 0.0 35 101-136 29-66 (300)
225 2ip2_A Probable phenazine-spec 43.7 30 0.001 27.0 4.6 51 68-132 39-89 (334)
226 2v0f_A Chromodomain-helicase-D 43.3 3.2 0.00011 29.1 -1.0 24 16-39 38-62 (87)
227 1hqc_A RUVB; extended AAA-ATPa 43.2 12 0.00041 28.9 2.2 33 100-133 281-313 (324)
228 2e9x_B DNA replication complex 42.0 11 0.00037 29.3 1.7 20 18-37 47-68 (185)
229 2a4a_A Deoxyribose-phosphate a 41.5 12 0.00041 30.8 2.0 26 14-46 172-197 (281)
230 3iz5_o 60S ribosomal protein L 39.4 42 0.0014 21.2 3.9 34 17-53 11-44 (51)
231 2h98_A HTH-type transcriptiona 38.9 6.4 0.00022 30.3 0.0 34 101-135 32-68 (313)
232 4a18_B RPL39, ribosomal protei 38.9 44 0.0015 21.2 4.0 34 17-53 11-44 (52)
233 1uth_A LYSR-type regulatory pr 38.7 6.5 0.00022 30.1 0.0 34 101-135 45-81 (315)
234 2nyg_A YOKD protein; PFAM02522 37.6 11 0.00036 30.9 1.1 89 12-106 49-147 (273)
235 3cuq_B Vacuolar protein-sortin 37.5 1.1E+02 0.0039 23.7 7.1 87 9-118 113-202 (218)
236 3u5e_l L46, YL40, 60S ribosoma 37.3 44 0.0015 21.1 3.8 34 17-53 11-44 (51)
237 3ndo_A Deoxyribose-phosphate a 35.5 43 0.0015 26.6 4.4 42 12-65 144-186 (231)
238 2d48_A Interleukin-4; four hel 35.2 19 0.00066 26.9 2.1 17 54-70 44-60 (129)
239 3mcz_A O-methyltransferase; ad 34.7 39 0.0013 26.6 4.0 51 68-133 54-104 (352)
240 2vn2_A DNAD, chromosome replic 33.2 30 0.001 24.2 2.8 34 71-118 52-85 (128)
241 2yx5_A UPF0062 protein MJ1593; 32.6 47 0.0016 22.0 3.6 39 104-143 22-70 (83)
242 2gbb_A Putative chorismate mut 32.3 26 0.00088 26.3 2.4 36 13-48 105-140 (156)
243 2r3s_A Uncharacterized protein 31.6 36 0.0012 26.3 3.3 48 68-130 37-84 (335)
244 3zsu_A TLL2057 protein, cyanoq 30.7 15 0.00053 27.2 0.9 60 49-119 45-104 (130)
245 2yu3_A DNA-directed RNA polyme 30.5 24 0.00083 24.5 1.9 44 61-118 42-87 (95)
246 1al3_A Cys regulon transcripti 30.1 11 0.00037 28.9 0.0 35 101-136 33-71 (324)
247 3gwz_A MMCR; methyltransferase 30.0 39 0.0013 27.2 3.3 50 68-131 69-119 (369)
248 4g6q_A Putative uncharacterize 28.1 37 0.0013 25.2 2.7 44 61-118 28-71 (182)
249 2ivy_A Hypothetical protein SS 27.7 40 0.0014 23.3 2.6 23 5-27 6-28 (101)
250 3v32_B Ribonuclease ZC3H12A; r 27.5 55 0.0019 25.3 3.6 27 102-128 85-114 (185)
251 3j21_f 50S ribosomal protein L 27.4 42 0.0014 21.2 2.4 34 17-53 11-44 (51)
252 2fmy_A COOA, carbon monoxide o 27.3 1.3E+02 0.0044 21.4 5.5 22 96-117 179-200 (220)
253 2pjp_A Selenocysteine-specific 27.3 1.4E+02 0.0049 20.3 5.5 54 56-124 65-119 (121)
254 3t7a_A Inositol pyrophosphate 27.3 30 0.001 29.4 2.2 17 52-68 296-312 (330)
255 2xvc_A ESCRT-III, SSO0910; cel 26.0 49 0.0017 21.6 2.6 33 70-116 25-57 (59)
256 3lst_A CALO1 methyltransferase 25.5 44 0.0015 26.5 2.8 50 68-132 53-102 (348)
257 1u3o_A Huntingtin-associated p 24.6 8.6 0.00029 26.4 -1.3 10 49-58 50-59 (82)
258 3tvt_B PINS, partner of inscut 24.6 11 0.00038 23.5 -0.7 30 94-124 13-42 (50)
259 1exe_A Transcription factor 1; 24.4 1.2E+02 0.0039 20.4 4.5 25 13-37 26-50 (99)
260 4esj_A Type-2 restriction enzy 24.4 45 0.0015 27.5 2.7 19 101-119 233-251 (257)
261 1jg5_A GTP cyclohydrolase I fe 24.2 36 0.0012 23.6 1.8 39 75-114 26-65 (83)
262 3dp7_A SAM-dependent methyltra 24.2 85 0.0029 25.1 4.4 57 61-132 40-97 (363)
263 1fp2_A Isoflavone O-methyltran 24.2 1E+02 0.0035 24.3 4.8 59 61-130 41-102 (352)
264 3h87_C Putative uncharacterize 23.8 61 0.0021 21.7 2.8 25 1-27 1-25 (73)
265 4asn_A TUBR; transcription, tu 23.4 1E+02 0.0034 21.7 4.0 39 96-135 46-88 (101)
266 3lcz_A YCZA, inhibitor of trap 23.3 37 0.0013 21.1 1.6 36 90-137 11-49 (53)
267 2cos_A Serine/threonine protei 23.0 22 0.00075 22.9 0.5 20 95-115 4-23 (54)
268 1i96_V Translation initiation 22.7 42 0.0014 23.1 1.9 33 93-125 46-79 (89)
269 3ls0_A SLL1638 protein, PSBQ; 22.6 63 0.0022 24.0 3.0 59 50-119 49-107 (133)
270 2crq_A Mitochondrial translati 21.9 38 0.0013 24.3 1.6 40 101-140 33-75 (112)
271 2f96_A Ribonuclease T; RNAse, 21.7 52 0.0018 24.6 2.4 56 55-112 160-217 (224)
272 2xub_A DNA-directed RNA polyme 21.2 91 0.0031 27.1 4.2 60 58-119 103-162 (534)
273 2pd0_A Hypothetical protein; s 21.2 58 0.002 26.3 2.7 37 3-39 37-73 (223)
274 3r12_A Deoxyribose-phosphate a 21.2 1.2E+02 0.0042 24.5 4.7 26 14-46 173-198 (260)
275 1x19_A CRTF-related protein; m 20.7 92 0.0031 24.6 3.8 49 68-131 62-110 (359)
276 2o97_B NS1, HU-1, DNA-binding 20.3 41 0.0014 22.2 1.5 25 13-37 26-50 (90)
277 3ngj_A Deoxyribose-phosphate a 20.3 48 0.0016 26.6 2.1 30 14-50 157-186 (239)
278 2k53_A A3DK08 protein; NESG, C 20.1 22 0.00076 23.4 0.0 23 7-29 47-69 (76)
No 1
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=100.00 E-value=5.5e-77 Score=459.17 Aligned_cols=141 Identities=45% Similarity=0.849 Sum_probs=137.4
Q ss_pred CCCCCceeccCchHHHHHHHHHHHHcCCCCCCCcchhcccCCCccCCCCCCc-hHHHHHHHHHHHHHHhCCCchhHHHHH
Q 032244 1 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPD-WYYIRAASMARKIYLRGGLGVGSFRRI 79 (144)
Q Consensus 1 m~~~~tv~DV~~~~fI~~~A~~LK~~gki~~P~w~d~vKTg~~kE~~P~d~D-W~y~RaASilRklYl~g~~Gv~~l~~~ 79 (144)
||+ +||||||||+||++||+|||++|||++|+|+||||||++||+||+||| |||+||||||||||++||+||++|+++
T Consensus 1 m~~-~tvkDV~a~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kEl~P~d~D~W~Y~RaASi~R~lYl~g~vGV~~lrk~ 79 (144)
T 3u5c_T 1 MPG-VSVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKL 79 (144)
T ss_dssp -CC-CCSTTSCHHHHHHHHHHHHHHHCCCCCTTTTTSCCSCTTCSSCCSSCSSSHHHHHHHHHHHHHTSSBCCHHHHHHH
T ss_pred CCC-CceeecCHHHHHHHHHHHHHHcCCCCCCchHhHhhccccccCCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 775 899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHHhhc
Q 032244 80 YGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVV 142 (144)
Q Consensus 80 YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA~~i~~~ 142 (144)
|||+||||++|+||++|||+|||+||||||++||||+++++||+||++||++||+||.||++.
T Consensus 80 YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~LD~iA~~v~~~ 142 (144)
T 3u5c_T 80 YGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQTLEE 142 (144)
T ss_dssp HCCEEEETTEEEEECCCCHHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCccccccCcHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999889999999999999999999763
No 2
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=100.00 E-value=1.1e-75 Score=456.36 Aligned_cols=140 Identities=36% Similarity=0.677 Sum_probs=137.0
Q ss_pred CCCceeccCchHHHHHHHHHHHHcCCCCCCCcchhcccCCCccCCCCCCchHHHHHHHHHHHHHHhCCCchhHHHHHhcC
Q 032244 3 TAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGG 82 (144)
Q Consensus 3 ~~~tv~DV~~~~fI~~~A~~LK~~gki~~P~w~d~vKTg~~kE~~P~d~DW~y~RaASilRklYl~g~~Gv~~l~~~YGg 82 (144)
.|+||||||||+||++||+|||++|+|++|+|+||||||++||+||+||||||+||||||||||++||+||++|+++|||
T Consensus 6 ~m~tvkDV~a~~fI~~~A~~LKk~gki~~P~W~d~vKTg~~KElaP~d~DW~YiRaASi~R~lYlrg~vGV~~lrk~YGg 85 (155)
T 2xzm_T 6 SFFTVKDVAAADFIREYASHLKKANKLSIPEFTQWTTTSVARELAPQDSDWVYIRTAALARKVYLKPHTGISTLKHIFGS 85 (155)
T ss_dssp CCCCGGGSCHHHHHHHHHHHTTSSCCSCCCHHHHSCCCSSSCSSCCSSTTHHHHHHHHHHHHHHHSTTCCHHHHHHHTCC
T ss_pred CCceeeecCHHHHHHHHHHHHHhcCCCCCCchHhhhhccccccCCCCCCchHHHHHHHHHHHHhccCCCCHHHHHHHHCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCC-----CceeCcchHhhHHHHHHHHhhc
Q 032244 83 GKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-----GRRITSSGQRDLDQVAGRIAVV 142 (144)
Q Consensus 83 ~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~g-----GR~lT~~G~~~lD~iA~~i~~~ 142 (144)
+||||++|+||++|||+|||+||||||++||||++++| ||+||++||++||+||.||+..
T Consensus 86 ~krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~~LDriA~~i~~~ 150 (155)
T 2xzm_T 86 NKDRGNLRNKHQACHGKILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMTELNRIATQIAIK 150 (155)
T ss_dssp EECCSSSCCEECCCCHHHHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCCcHHHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887 9999999999999999999753
No 3
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-76 Score=456.72 Aligned_cols=139 Identities=73% Similarity=1.239 Sum_probs=136.3
Q ss_pred CCceeccCchHHHHHHHHHHHHcCCCCCCCcchhcccCCCccCCCCCCchHHHHHHHHHHHHHHhCCCchhHHHHHhcCC
Q 032244 4 AKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGG 83 (144)
Q Consensus 4 ~~tv~DV~~~~fI~~~A~~LK~~gki~~P~w~d~vKTg~~kE~~P~d~DW~y~RaASilRklYl~g~~Gv~~l~~~YGg~ 83 (144)
.+||||||||+||++||+|||++|||++|+|+||||||++||+||+||||||+||||||||||++||+||++|+++|||+
T Consensus 6 ~~tvkDV~a~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~KEl~P~d~DW~Y~RaASi~R~lYlrg~vGV~~lrk~YGg~ 85 (146)
T 3iz6_S 6 ARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGR 85 (146)
T ss_dssp HHHHHHSCHHHHHHHHHTTGGGSSCCCCTTTGGGCCSSSSCSSSTHHHHTHHHHHHHHHHHHHHHCSBCHHHHHSSSCCC
T ss_pred CCeeeecCHHHHHHHHHHHHHHcCCCCCCchHHHhhccccccCCCCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHHhhc
Q 032244 84 KRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVV 142 (144)
Q Consensus 84 k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA~~i~~~ 142 (144)
||||++|+||++|||+|||+||||||++||||+++++||+||++||++||+||.||++.
T Consensus 86 krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~LD~iA~~v~~~ 144 (146)
T 3iz6_S 86 QRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVT 144 (146)
T ss_dssp CCCCSSCCCCCCCCHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcccCCCcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999889999999999999999999753
No 4
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=100.00 E-value=6.7e-54 Score=330.71 Aligned_cols=139 Identities=37% Similarity=0.626 Sum_probs=125.4
Q ss_pred CCceeccCchHHHHHHHHHHHHcCCCCCCCcchhcccCCCccCCCCCCchHHHHHHHHHHHHHHhCCCchhHHHHHhcCC
Q 032244 4 AKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGG 83 (144)
Q Consensus 4 ~~tv~DV~~~~fI~~~A~~LK~~gki~~P~w~d~vKTg~~kE~~P~d~DW~y~RaASilRklYl~g~~Gv~~l~~~YGg~ 83 (144)
|+||||||||+||++||+|||++|+|++|+|+||||||.++|++|+|+||||.|||++||++|++|+.|++.|++.|||+
T Consensus 1 m~tv~dv~~~~~i~~~a~~lk~~~ki~~P~w~~~vKt~~~ke~~p~~~~~~y~ria~~lr~~i~~g~~G~~~La~~~gg~ 80 (150)
T 2v7f_A 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGR 80 (150)
T ss_dssp -CCGGGSCHHHHHHHHHHHHTTCTTCCCCSCGGGCCC------CHHHHTHHHHHHHHHHHHHHHHCSBCHHHHHHHHCC-
T ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCCcchhhhhcccccccCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHHhhc
Q 032244 84 KRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVV 142 (144)
Q Consensus 84 k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA~~i~~~ 142 (144)
||||++|+||+++|+++||.+||+||++|||++.+.+|+.+|+.|+++||+||.+|++.
T Consensus 81 k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~~~~l~~ia~~i~~~ 139 (150)
T 2v7f_A 81 KNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKE 139 (150)
T ss_dssp ---CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCCCceEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999753
No 5
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=97.35 E-value=0.00047 Score=46.66 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhC-CCchhHHHHHhcCCCCCCCCCCCCCCCchhh-HHHHHHHHHhCCcceecCCCCc----eeCcch
Q 032244 55 YIRAASMARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSV-ARHILHQLQDTNIIELDSKGGR----RITSSG 128 (144)
Q Consensus 55 y~RaASilRklYl~g-~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~i-iR~~LqqLE~~glv~k~~~gGR----~lT~~G 128 (144)
.+|...+|..++-.+ ++.+..|.+..|- +.+- +-.+++.||+.|||+.++.++| .||++|
T Consensus 14 ~~~~l~~L~~l~~~~~~~t~~eLa~~l~i--------------s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G 79 (95)
T 2pg4_A 14 LIRILPTLLEFEKKGYEPSLAEIVKASGV--------------SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKG 79 (95)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHCC--------------CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHCC--------------CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhH
Confidence 457777888787787 8999999998883 3356 7778899999999996654454 799999
Q ss_pred HhhHHHHHHHH
Q 032244 129 QRDLDQVAGRI 139 (144)
Q Consensus 129 ~~~lD~iA~~i 139 (144)
++.++.+....
T Consensus 80 ~~~~~~~~~~~ 90 (95)
T 2pg4_A 80 RRLAECLEKCR 90 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 6
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=97.30 E-value=0.00041 Score=48.47 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q 032244 58 AASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAG 137 (144)
Q Consensus 58 aASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA~ 137 (144)
...||+.|+ .+ +|...|...-|= |-+.+|..+..||+.|||++... |-.||++|+..|+.+..
T Consensus 10 i~~IL~~i~-~~-~~~t~La~~~~l--------------s~~~~~~~l~~L~~~GLI~~~~~-~~~LT~kG~~~l~~l~~ 72 (95)
T 1r7j_A 10 IQAILEACK-SG-SPKTRIMYGANL--------------SYALTGRYIKMLMDLEIIRQEGK-QYMLTKKGEELLEDIRK 72 (95)
T ss_dssp HHHHHHHHT-TC-BCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETT-EEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cC-CCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCeEEECC-eeEEChhHHHHHHHHHH
Confidence 356888777 45 999999986663 45699999999999999999864 89999999987776543
No 7
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.18 E-value=0.0017 Score=45.72 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
.||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.+ .++| .||++|+..++
T Consensus 35 ~iL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 35 AVLYTLATEGSRTQKHIGEKWSL--------------PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 37888999999999999998873 3457788999999999999755 3355 49999999998
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
.+...+
T Consensus 101 ~~~~~~ 106 (145)
T 3g3z_A 101 PLTESA 106 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 8
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=97.17 E-value=0.0015 Score=47.25 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=50.5
Q ss_pred HHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q 032244 64 KIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAG 137 (144)
Q Consensus 64 klYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA~ 137 (144)
.|+-.+++.+..|...+|- |.+-++.+|+.||+.|||+..+..|-.||+.|+..+..+..
T Consensus 48 ~l~~~~~~~~~~la~~l~v--------------s~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~~~ 107 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGV--------------SQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRE 107 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHHHH
Confidence 4444688999999999874 45789999999999999998876688999999998887654
No 9
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.13 E-value=0.0018 Score=45.58 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=52.5
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.+ .++| .||++|+..++.
T Consensus 42 iL~~l~~~~~~t~~eLa~~l~~--------------~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 107 (143)
T 3oop_A 42 VLEGIEANEPISQKEIALWTKK--------------DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTE 107 (143)
T ss_dssp HHHHHHHHSSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCC--------------CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHH
Confidence 7888888899999999998873 3457788999999999999765 3355 499999999998
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 108 ~~~~~ 112 (143)
T 3oop_A 108 LRDIV 112 (143)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 10
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=97.07 E-value=0.0028 Score=45.04 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=49.9
Q ss_pred HHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q 032244 65 IYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAG 137 (144)
Q Consensus 65 lYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA~ 137 (144)
+.-.+++.+..|+...|- |.+-++.+|+.||+.|||+..+.++-.||++|+..+..+..
T Consensus 17 ~~~~~~~~~~ela~~l~v--------------s~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~~~~ 75 (142)
T 1on2_A 17 IEEKGYARVSDIAEALAV--------------HPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRLVY 75 (142)
T ss_dssp HHHHSSCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HhhcCCCCHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHHHHH
Confidence 334689999999998873 45689999999999999998886678999999999887654
No 11
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=97.06 E-value=0.0022 Score=45.13 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.++.|....|-. .+-+-.+++.||+.|||++.+ .++| .||++|+..+++
T Consensus 42 vL~~l~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 107 (142)
T 3ech_A 42 VLKLIDEQRGLNLQDLGRQMCRD--------------KALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLH 107 (142)
T ss_dssp HHHHHHHTTTCCHHHHHHHHC-----------------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHhCCC--------------HHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHH
Confidence 78888889999999999988743 246778999999999999765 3344 599999999998
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 108 ~~~~~ 112 (142)
T 3ech_A 108 AELIM 112 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 12
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=97.05 E-value=0.0029 Score=45.68 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.++.|....|-. .+-+-.+++.||+.|||++.. .++| .||++|+..+++
T Consensus 51 iL~~l~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 116 (162)
T 3k0l_A 51 ALSVLAAKPNLSNAKLAERSFIK--------------PQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQ 116 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSC--------------GGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHH
Confidence 78888888999999999988743 346778999999999998654 3354 599999999998
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 117 ~~~~~ 121 (162)
T 3k0l_A 117 CNQVV 121 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 13
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=97.02 E-value=0.004 Score=43.24 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||+... .++| .||++|+..+++
T Consensus 39 iL~~l~~~~~~~~~~la~~l~~--------------~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 104 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKKVLSV--------------DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQ 104 (138)
T ss_dssp HHHHHHHHSSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHCC--------------ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHH
Confidence 6777888899999999988763 3456788999999999998753 3454 599999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 105 ~~~~~ 109 (138)
T 1jgs_A 105 CHQLV 109 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
No 14
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.99 E-value=0.003 Score=44.29 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=52.6
Q ss_pred HHHHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhh
Q 032244 59 ASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRD 131 (144)
Q Consensus 59 ASilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~ 131 (144)
..||..|+- .+++.+..|....|- +.+-+..+++.||+.|||++.+ .++| .||++|+..
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i--------------~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~ 103 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERM--------------RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRN 103 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCC--------------ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHH
Confidence 447888998 899999999998762 4467888999999999999765 3344 599999999
Q ss_pred HHHHHHHH
Q 032244 132 LDQVAGRI 139 (144)
Q Consensus 132 lD~iA~~i 139 (144)
++.+...+
T Consensus 104 ~~~~~~~~ 111 (147)
T 2hr3_A 104 LYGNRAKR 111 (147)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 15
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.98 E-value=0.0027 Score=44.37 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+ .+++.+..|....|- +.+-+..+|+.||+.|||+..+ .++| .||++|+..++.
T Consensus 42 iL~~l~-~~~~~~~ela~~l~~--------------s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 106 (146)
T 2gxg_A 42 VLRATS-DGPKTMAYLANRYFV--------------TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNK 106 (146)
T ss_dssp HHHHHT-TSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHh-cCCcCHHHHHHHhCC--------------CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHH
Confidence 677888 999999999998763 4568889999999999998654 3343 699999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 107 ~~~~~ 111 (146)
T 2gxg_A 107 GIEIY 111 (146)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 16
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.93 E-value=0.0036 Score=43.27 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|-. .+-+-.+|+.||+.|||+... .++| .||++|+..+++
T Consensus 38 iL~~l~~~~~~~~~ela~~l~~~--------------~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIENMGCV--------------PSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQ 103 (139)
T ss_dssp HHHHHHHSCSEEHHHHHHHCSSC--------------CTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHH
Confidence 67778888999999999988732 245778999999999998753 3344 599999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 104 ~~~~~ 108 (139)
T 3bja_A 104 VDVQY 108 (139)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 17
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=96.93 E-value=0.0024 Score=45.18 Aligned_cols=65 Identities=6% Similarity=0.088 Sum_probs=52.1
Q ss_pred HHHHHHHh--CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec--CCCCc----eeCcchHhhH
Q 032244 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD--SKGGR----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~--g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~--~~gGR----~lT~~G~~~l 132 (144)
||..|+-. +++.+..|....|- +.+-+-.+|+.||+.|||++. +.++| .||++|++.+
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNY--------------KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSS--------------HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHhccCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 67778888 88999999997773 335677789999999999875 34455 6999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
+++...+
T Consensus 108 ~~~~~~~ 114 (127)
T 2frh_A 108 ESLLSRV 114 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 18
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=96.92 E-value=0.0031 Score=45.55 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.. .++| .||++|+..+++
T Consensus 58 vL~~l~~~~~~t~~eLa~~l~~--------------~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 123 (161)
T 3e6m_A 58 LLSSLSAYGELTVGQLATLGVM--------------EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAE 123 (161)
T ss_dssp HHHHHHHHSEEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHH
Confidence 7777888899999999997763 3467888999999999999765 3344 599999999998
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 124 ~~~~~ 128 (161)
T 3e6m_A 124 ISPLI 128 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86654
No 19
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=96.90 E-value=0.0043 Score=43.26 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=51.9
Q ss_pred HHHHHHHHhC--CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhh
Q 032244 60 SMARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRD 131 (144)
Q Consensus 60 SilRklYl~g--~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~ 131 (144)
.||..|+-.+ ++.+..|....|- +.+-+-.+++.||+.|||++.+ .++| .||++|+..
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~ 100 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQR--------------TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKL 100 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCC--------------CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHH
Confidence 3788888886 9999999998873 3456778999999999998653 4455 499999999
Q ss_pred HHHHHHHH
Q 032244 132 LDQVAGRI 139 (144)
Q Consensus 132 lD~iA~~i 139 (144)
++.+...+
T Consensus 101 ~~~~~~~~ 108 (139)
T 3eco_A 101 VEAFTSIF 108 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
No 20
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.89 E-value=0.004 Score=44.72 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=51.6
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.++.|....|- +.+-+-.+++.||+.|||++.+ .++| .||++|+..++.
T Consensus 55 vL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDYLKI--------------DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHH
Confidence 6778888899999999998873 3467888999999999998654 3455 499999999998
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 121 ~~~~~ 125 (159)
T 3s2w_A 121 MKKIA 125 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 21
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=96.88 E-value=0.0045 Score=43.71 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=50.5
Q ss_pred HHHHHHH----hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHH
Q 032244 61 MARKIYL----RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVA 136 (144)
Q Consensus 61 ilRklYl----~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA 136 (144)
+|+.||. .+++.+..|+...|- |.+-++.+|+.||+.|||++.+ ++-.||++|+...+.+.
T Consensus 18 ~L~~l~~l~~~~~~~s~~ela~~l~i--------------s~~tv~~~l~~Le~~Gli~r~~-~~~~Lt~~g~~~~~~~~ 82 (139)
T 2x4h_A 18 YLLTIKRYNDSGEGAKINRIAKDLKI--------------APSSVFEEVSHLEEKGLVKKKE-DGVWITNNGTRSINYLI 82 (139)
T ss_dssp HHHHHHHHHTTTSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHhCC--------------ChHHHHHHHHHHHHCCCEEecC-CeEEEChhHHHHHHHHH
Confidence 4444543 578999999998883 4578999999999999999888 58899999999887765
Q ss_pred H
Q 032244 137 G 137 (144)
Q Consensus 137 ~ 137 (144)
.
T Consensus 83 ~ 83 (139)
T 2x4h_A 83 K 83 (139)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.87 E-value=0.0044 Score=45.22 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.. .++| .||++|+..+++
T Consensus 50 iL~~L~~~~~~t~~eLa~~l~i--------------s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 50 TLVILSNHGPINLATLATLLGV--------------QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 6778888899999999998873 3456778999999999998743 3344 599999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 116 ~~~~~ 120 (168)
T 2nyx_A 116 VTEHR 120 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 23
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=96.86 E-value=0.003 Score=45.02 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.++.|....|- +.+-+-.+++.||+.|||++.+ .++| .||++|+..++.
T Consensus 46 iL~~l~~~~~~~~~eLa~~l~~--------------~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 111 (149)
T 4hbl_A 46 VMLTLWEENPQTLNSIGRHLDL--------------SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEA 111 (149)
T ss_dssp HHHHHHHSSSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHH
Confidence 7888888899999999998873 3467888999999999999764 3355 499999999998
Q ss_pred HHHHHh
Q 032244 135 VAGRIA 140 (144)
Q Consensus 135 iA~~i~ 140 (144)
+...+.
T Consensus 112 ~~~~~~ 117 (149)
T 4hbl_A 112 VFEAIS 117 (149)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876553
No 24
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.85 E-value=0.0045 Score=41.04 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC-CCc----eeCcchHhhHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GGR----RITSSGQRDLDQ 134 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~-gGR----~lT~~G~~~lD~ 134 (144)
.|+..|.-.+++.+..|....|- +.+-+..+|+.||+.|||+.... ++| .+|+.|+..++.
T Consensus 24 ~il~~l~~~~~~s~~ela~~l~i--------------s~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~ 89 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIARELDL--------------SARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKE 89 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHH
Confidence 47777877899999999998863 55789999999999999987542 455 699999999888
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 90 ~~~~~ 94 (109)
T 1sfx_A 90 FKSSI 94 (109)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 25
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.82 E-value=0.0066 Score=42.66 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=51.2
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+-.+|+.||+.|||+... .++| .||++|+..++.
T Consensus 47 iL~~l~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 112 (150)
T 2rdp_A 47 ALQWLLEEGDLTVGELSNKMYL--------------ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEE 112 (150)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCC--------------CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHH
Confidence 6788888899999999998863 4467888999999999998753 3344 599999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 113 ~~~~~ 117 (150)
T 2rdp_A 113 VIEKR 117 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 26
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.80 E-value=0.0033 Score=44.60 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCccee--cC--CCCc----eeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL--DS--KGGR----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k--~~--~gGR----~lT~~G~~~l 132 (144)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++ .+ .++| .||++|+..+
T Consensus 46 iL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 46 MINVIYSTPGISVADLTKRLII--------------TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 6888888899999999998873 34577889999999999998 43 3344 5999999998
Q ss_pred HHHHHH
Q 032244 133 DQVAGR 138 (144)
Q Consensus 133 D~iA~~ 138 (144)
+++...
T Consensus 112 ~~~~~~ 117 (154)
T 2qww_A 112 KRSTAN 117 (154)
T ss_dssp HHHHSC
T ss_pred HHHHhh
Confidence 876543
No 27
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=96.79 E-value=0.0037 Score=44.27 Aligned_cols=65 Identities=18% Similarity=0.335 Sum_probs=45.8
Q ss_pred HHHHHHHh--CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCce----eCcchHhhH
Q 032244 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGRR----ITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~--g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR~----lT~~G~~~l 132 (144)
||..|+-. +++.+..|....|-. .+-+-.+++.||+.|||++.. .++|. ||++|+..+
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~--------------~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRR--------------GASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC--------------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 78888887 899999999977632 235678999999999998764 33553 999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
+.+...+
T Consensus 112 ~~~~~~~ 118 (148)
T 3jw4_A 112 EEFNNIF 118 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876554
No 28
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=96.78 E-value=0.0072 Score=41.92 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=51.4
Q ss_pred HHHHHHHhC--CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhH
Q 032244 61 MARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g--~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~l 132 (144)
||..|+-.+ ++.+..|....|- +.+-+..+++.||+.|||+..+ .++| .||++|+..+
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~--------------~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSI--------------KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC--------------CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 688888887 8999999998873 3467888999999999998654 3343 3899999998
Q ss_pred HHHHHH
Q 032244 133 DQVAGR 138 (144)
Q Consensus 133 D~iA~~ 138 (144)
+.+...
T Consensus 105 ~~~~~~ 110 (141)
T 3bro_A 105 TIILSY 110 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877554
No 29
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.78 E-value=0.0062 Score=43.23 Aligned_cols=64 Identities=14% Similarity=0.312 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCccee----cCCCCc----eeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL----DSKGGR----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k----~~~gGR----~lT~~G~~~l 132 (144)
||..| -.+++.++.|+...|-.+ +-+-.+++.||+.|||+. ++.++| .||++|+..+
T Consensus 43 iL~~l-~~~~~t~~eLa~~l~~~~--------------~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 43 VLNML-SIEALTVGQITEKQGVNK--------------AAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHH-HHSCBCHHHHHHHHCSCS--------------SHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHH-HcCCcCHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 67777 789999999999887432 467789999999999996 555455 6999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
+.+...+
T Consensus 108 ~~~~~~~ 114 (151)
T 3kp7_A 108 KERKAIM 114 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 30
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.76 E-value=0.0035 Score=43.50 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+..+++.||+.|||++.+ .++| .||++|+..+++
T Consensus 41 iL~~l~~~~~~t~~ela~~l~~--------------s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 106 (142)
T 2fbi_A 41 VIRILRQQGEMESYQLANQACI--------------LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVS 106 (142)
T ss_dssp HHHHHHHHCSEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCC--------------CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHH
Confidence 7888888899999999998763 4467888999999999998764 3344 499999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 107 ~~~~~ 111 (142)
T 2fbi_A 107 MSGDM 111 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 31
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.75 E-value=0.0041 Score=41.88 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCC---CceeCcchHhhHHHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG---GRRITSSGQRDLDQVA 136 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~g---GR~lT~~G~~~lD~iA 136 (144)
.||..|+-.+++.+..|.+.... ...-+.+-+-.+|+.||+.|||++..+. .-.||++|+..++.+.
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~----------~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~ 81 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNA----------EFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK 81 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHT----------TSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence 36777777889999999322210 1223456788899999999999976532 2369999999998876
Q ss_pred HHH
Q 032244 137 GRI 139 (144)
Q Consensus 137 ~~i 139 (144)
..+
T Consensus 82 ~~~ 84 (99)
T 1tbx_A 82 TAI 84 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 32
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.74 E-value=0.0049 Score=42.08 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCc----eeCcchHhhHHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGR----RITSSGQRDLDQV 135 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR----~lT~~G~~~lD~i 135 (144)
.||+.| ..+++.+..|....| -|.+-+...|+.||+.|+|+.... || .||++|...+...
T Consensus 25 ~IL~~L-~~~~~~~~ela~~l~--------------is~~tv~~~l~~L~~~gli~~~~~-gr~~~y~l~~~~~~~~~~~ 88 (114)
T 2oqg_A 25 EILTEL-GRADQSASSLATRLP--------------VSRQAIAKHLNALQACGLVESVKV-GREIRYRALGAELNKTART 88 (114)
T ss_dssp HHHHHH-HHSCBCHHHHHHHSS--------------SCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECSHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeeEEec-CCEEEEEechHHHHHHHHH
Confidence 478777 689999999999886 355789999999999999998765 54 7999998877665
Q ss_pred HHH
Q 032244 136 AGR 138 (144)
Q Consensus 136 A~~ 138 (144)
...
T Consensus 89 ~~~ 91 (114)
T 2oqg_A 89 LER 91 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 33
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.72 E-value=0.0024 Score=43.24 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=51.7
Q ss_pred HHHHHHHHHHH-hCC---CchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCc----eeCcch
Q 032244 57 RAASMARKIYL-RGG---LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGR----RITSSG 128 (144)
Q Consensus 57 RaASilRklYl-~g~---~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR----~lT~~G 128 (144)
++..||-.|+- .++ +.+..|....|- +.+-+-.+|+.||+.||| .++.++| .||++|
T Consensus 13 ~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i--------------~~~tvs~~l~~Le~~Glv-~~~~d~R~~~v~LT~~G 77 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDVYIQYIASKVNS--------------PHSYVWLIIKKFEEAKMV-ECELEGRTKIIRLTDKG 77 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCEEHHHHHHHSSS--------------CHHHHHHHHHHHHHTTSE-EEEEETTEEEEEECHHH
T ss_pred hHHHHHHHHHHccCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCcCc-cCCCCCCeEEEEEChhH
Confidence 44556766665 355 889999998763 345677889999999999 4444466 799999
Q ss_pred HhhHHHHHHHH
Q 032244 129 QRDLDQVAGRI 139 (144)
Q Consensus 129 ~~~lD~iA~~i 139 (144)
+..++++...+
T Consensus 78 ~~~~~~~~~~~ 88 (95)
T 2qvo_A 78 QKIAQQIKSII 88 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887665
No 34
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.70 E-value=0.0061 Score=42.14 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
.||..|+-.+++.+..|....|- +.+-+..+++.||+.|||++.+ .++| .||++|+..++
T Consensus 33 ~iL~~l~~~~~~~~~ela~~l~~--------------s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHV--------------DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 37778888899999999998873 4567888999999999999754 3343 69999999998
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
++...+
T Consensus 99 ~~~~~~ 104 (138)
T 3bpv_A 99 LILKVE 104 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 35
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.68 E-value=0.0091 Score=42.57 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
.||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.. .++| .||++|+..++
T Consensus 48 ~iL~~l~~~~~~t~~ela~~l~i--------------s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 113 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFLST--------------TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 113 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTTS--------------CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence 37888888899999999998762 4457788999999999998753 3344 58999999998
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
.+...+
T Consensus 114 ~~~~~~ 119 (154)
T 2eth_A 114 EILSNF 119 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 36
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=96.66 E-value=0.0034 Score=44.27 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
.||..|+-.+++.++.|....|- +.+-+-.+++.||+.|||++.+ .++| .||++|+..++
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFL--------------DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC--------------ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 37878888899999999998873 4567889999999999999765 3354 58999999999
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
++....
T Consensus 106 ~~~~~~ 111 (140)
T 3hsr_A 106 PLAEIS 111 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 37
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.66 E-value=0.0037 Score=43.31 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
.||..|+ .++..++.|....+ .-|.+.+-..|+.||+.|||++.. .++| .||++|+..++
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~-------------gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 94 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIP-------------GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP 94 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHST-------------TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred HHHHHHH-hCCcCHHHHHHHcc-------------cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence 3677776 89999999998764 135678999999999999998664 2233 79999999877
Q ss_pred HHH
Q 032244 134 QVA 136 (144)
Q Consensus 134 ~iA 136 (144)
.+.
T Consensus 95 ~l~ 97 (107)
T 2fsw_A 95 IID 97 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 38
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=96.64 E-value=0.0081 Score=44.01 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=49.6
Q ss_pred HHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 61 MARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 61 ilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
||..|+- .+++.+..|....|- +.+-+-.+++.||+.|||++.. .++| .||++|+..++
T Consensus 58 vL~~L~~~~~~~t~~eLa~~l~i--------------~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 58 TLHNIHQLPPDQSQIQLAKAIGI--------------EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHSCSSEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCC--------------CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 6777887 678999999998873 3467788999999999999765 3354 49999999999
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
.+...+
T Consensus 124 ~~~~~~ 129 (166)
T 3deu_A 124 EMEEVI 129 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 39
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=96.62 E-value=0.0042 Score=43.45 Aligned_cols=64 Identities=8% Similarity=0.144 Sum_probs=50.7
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|-. .+-+..+|+.||+.|||+..+ .++| .||++|+..++.
T Consensus 42 iL~~l~~~~~~~~~ela~~l~~~--------------~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (142)
T 2bv6_A 42 VLTILWDESPVNVKKVVTELALD--------------TGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPE 107 (142)
T ss_dssp HHHHHHHSSEEEHHHHHHHTTCC--------------TTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC--------------hhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHH
Confidence 67778888999999999988732 346788999999999998654 3344 579999999988
Q ss_pred HHHH
Q 032244 135 VAGR 138 (144)
Q Consensus 135 iA~~ 138 (144)
+...
T Consensus 108 ~~~~ 111 (142)
T 2bv6_A 108 LSNA 111 (142)
T ss_dssp HTTH
T ss_pred HHHH
Confidence 7543
No 40
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.61 E-value=0.0064 Score=42.37 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
.||..|+-.+++.+..|....|- +.+-+..+++.||+.|||+..+ .++| .||++|+..++
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l~~--------------s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLLGV--------------AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 37888888899999999998873 4467888999999999999764 3333 69999999998
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
.+...+
T Consensus 103 ~~~~~~ 108 (145)
T 2a61_A 103 KVIERR 108 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 865543
No 41
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.60 E-value=0.007 Score=43.02 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.. .++| .||++|+..+++
T Consensus 48 iL~~l~~~~~~t~~ela~~l~i--------------~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 113 (155)
T 3cdh_A 48 VLACLVDNDAMMITRLAKLSLM--------------EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAES 113 (155)
T ss_dssp HHHHHSSCSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH
T ss_pred HHHHHHHCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHH
Confidence 6777777889999999997762 3456788999999999999764 3343 599999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 114 ~~~~~ 118 (155)
T 3cdh_A 114 LVASA 118 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75543
No 42
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.54 E-value=0.0082 Score=39.72 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGG---RRITSSGQRDLDQVA 136 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gG---R~lT~~G~~~lD~iA 136 (144)
.|+..|.-.+++.+..|....|- |.+-+...|++||+.|+|+...++. -.||++|...+-...
T Consensus 28 ~il~~l~~~~~~s~~ela~~l~i--------------s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l 93 (99)
T 3cuo_A 28 LILCMLSGSPGTSAGELTRITGL--------------SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATL 93 (99)
T ss_dssp HHHHHHTTCCSEEHHHHHHHHCC--------------CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 47777766669999999998873 4578999999999999999877532 268999977776665
Q ss_pred HHHh
Q 032244 137 GRIA 140 (144)
Q Consensus 137 ~~i~ 140 (144)
.+++
T Consensus 94 ~~~~ 97 (99)
T 3cuo_A 94 KNVY 97 (99)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5543
No 43
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=96.53 E-value=0.0096 Score=41.90 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+..+|+.||+.|||+... .++| .||++|+..++.
T Consensus 45 iL~~l~~~~~~t~~ela~~l~~--------------~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 110 (152)
T 3bj6_A 45 ILEGLSLTPGATAPQLGAALQM--------------KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITA 110 (152)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHH
Confidence 6878888899999999998873 3467888999999999999764 2333 589999999888
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 111 ~~~~~ 115 (152)
T 3bj6_A 111 IRADE 115 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 44
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=96.52 E-value=0.013 Score=41.76 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=49.1
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCC----ceeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGG----RRITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gG----R~lT~~G~~~lD~ 134 (144)
||..|+-.+++.++.|....|- +.+-+-.+|+.||+.|||++.. .++ -.||++|+..++.
T Consensus 54 iL~~l~~~~~~t~~ela~~l~i--------------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 119 (162)
T 2fa5_A 54 VITILALYPGSSASEVSDRTAM--------------DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYET 119 (162)
T ss_dssp HHHHHHHSTTCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHH
Confidence 6777777889999999998863 4467888999999999999754 233 3599999999987
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 120 ~~~~~ 124 (162)
T 2fa5_A 120 VAPLV 124 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 45
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.52 E-value=0.013 Score=41.24 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCC----ceeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGG----RRITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gG----R~lT~~G~~~lD~ 134 (144)
||..|+-.+++.++.|....|- +.+-+-.+++.||+.|||++.+ .++ -.||++|+..++.
T Consensus 45 iL~~l~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~ 110 (148)
T 3nrv_A 45 IISVLSSASDCSVQKISDILGL--------------DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
T ss_dssp HHHHHHHSSSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHH
Confidence 7888888999999999998873 3467889999999999999764 223 4699999999998
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 111 ~~~~~ 115 (148)
T 3nrv_A 111 ASDFA 115 (148)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76543
No 46
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.50 E-value=0.0097 Score=41.08 Aligned_cols=65 Identities=12% Similarity=0.263 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+-.+|+.||+.|||+..+ .++| .||++|+..+++
T Consensus 43 iL~~l~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (140)
T 2nnn_A 43 ALVRLGETGPCPQNQLGRLTAM--------------DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEA 108 (140)
T ss_dssp HHHHHHHHSSBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHH
Confidence 7888888899999999998763 4467888999999999999754 3233 599999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 109 ~~~~~ 113 (140)
T 2nnn_A 109 GLAAA 113 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 47
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.50 E-value=0.0061 Score=42.26 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCC----ceeCcchHhhHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGG----RRITSSGQRDLD 133 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gG----R~lT~~G~~~lD 133 (144)
.||+.|+ .++..++.|.+... .-|.+.+-..|+.||+.|||++.. .++ -.||++|++.++
T Consensus 18 ~IL~~L~-~~~~~~~eLa~~l~-------------~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~ 83 (107)
T 2hzt_A 18 VILXHLT-HGKKRTSELKRLMP-------------NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 83 (107)
T ss_dssp HHHHHHT-TCCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-------------CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHH
Confidence 3677777 89999999999751 346678999999999999998654 223 479999999877
Q ss_pred HHH
Q 032244 134 QVA 136 (144)
Q Consensus 134 ~iA 136 (144)
.+.
T Consensus 84 ~~~ 86 (107)
T 2hzt_A 84 ILD 86 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 48
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=96.49 E-value=0.0092 Score=50.12 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=53.1
Q ss_pred HHHHHHH-----HHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCC-CceeCcch-H
Q 032244 57 RAASMAR-----KIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-GRRITSSG-Q 129 (144)
Q Consensus 57 RaASilR-----klYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~g-GR~lT~~G-~ 129 (144)
|-..||+ .|--.+|+|+..|.+.|+ -.-|..-||+-|+.||++|++++...+ ||.-|.+| +
T Consensus 18 R~~~IL~~i~~~yl~~~~pV~s~~La~~~~------------l~VS~aTIRrDL~~LE~~GlL~r~HgsAgript~~g~r 85 (338)
T 1stz_A 18 RQRKVLYCIVREYIENKKPVSSQRVLEVSN------------IEFSSATIRNDMKKLEYLGYIYQPHTSAGRIPTDKGLR 85 (338)
T ss_dssp HHHHHHHHHHHHHHHHCSCBCHHHHHHHSC------------CCSCHHHHHHHHHHHHHTTSEECCSSCSCBEECHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHhC------------CCCCHHHHHHHHHHHHHCCCEEEccCcceecCCcccch
Confidence 7777887 344458999999999884 123778999999999999999987754 68889888 4
Q ss_pred hhHHHHH
Q 032244 130 RDLDQVA 136 (144)
Q Consensus 130 ~~lD~iA 136 (144)
...|++.
T Consensus 86 ~yvd~l~ 92 (338)
T 1stz_A 86 FYYEEML 92 (338)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 4566554
No 49
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.47 E-value=0.011 Score=41.38 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+ +.++.|....|- +.+-+..+|+.||+.|||++.+ .++| .||++|+..+..
T Consensus 43 iL~~l~~~~-~t~~eLa~~l~~--------------s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~ 107 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRLNV--------------SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEE 107 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHH
Confidence 788888777 999999999873 4578899999999999999765 2354 499999999998
Q ss_pred HH
Q 032244 135 VA 136 (144)
Q Consensus 135 iA 136 (144)
+.
T Consensus 108 ~~ 109 (146)
T 3tgn_A 108 HH 109 (146)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 50
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.43 E-value=0.008 Score=39.74 Aligned_cols=66 Identities=8% Similarity=0.113 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCC----ceeCcchHhhHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGG----RRITSSGQRDLD 133 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gG----R~lT~~G~~~lD 133 (144)
.||..|+-.++..+..|....| -|.+-+-..|+.||+.|+|+... .+| -.||++|+..+.
T Consensus 20 ~iL~~L~~~~~~~~~ela~~l~--------------is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~ 85 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKVLD--------------LTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAK 85 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHhcCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHH
Confidence 4777787789999999999876 34567889999999999998543 223 358999998888
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
.+...+
T Consensus 86 ~~~~~~ 91 (100)
T 1ub9_A 86 RFLSSL 91 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 51
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=96.43 E-value=0.01 Score=42.41 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+..+|+.||+.|||++.. .++| .||++|+..++.
T Consensus 57 iL~~l~~~~~~t~~ela~~l~i--------------s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 57 ALAILSAKDGLPIGTLGIFAVV--------------EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCC--------------ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 6777888899999999998873 3467888999999999999754 3344 599999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+....
T Consensus 123 ~~~~~ 127 (162)
T 3cjn_A 123 LWPHM 127 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 52
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.39 E-value=0.0082 Score=44.30 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
.||+.|. .|+...+.|++.-. .-|.+.+-..|+.||+.|||++.. ...| .||++|++.+.
T Consensus 30 ~IL~~L~-~g~~rf~eL~~~l~-------------gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 30 ILFYHMI-DGKKRFNEFRRICP-------------SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp HHHHHHT-TSCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HHHHHHh-cCCcCHHHHHHHhc-------------ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHH
Confidence 4778887 89999999999762 246679999999999999999764 2233 69999999887
Q ss_pred HHHH
Q 032244 134 QVAG 137 (144)
Q Consensus 134 ~iA~ 137 (144)
.+..
T Consensus 96 ~l~~ 99 (131)
T 4a5n_A 96 IVLQ 99 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 53
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.38 E-value=0.018 Score=39.98 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=50.6
Q ss_pred HHHHH-HHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 61 MARKI-YLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 61 ilRkl-Yl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
||..| +-.+++.+..|....|- +.+-+..+++.||+.|||+..+ .++| .||++|+..++
T Consensus 42 iL~~l~~~~~~~t~~~la~~l~~--------------s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQSVGV--------------EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 107 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC--------------ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHH
Confidence 67777 45789999999998873 4467888999999999999765 2233 68999999998
Q ss_pred HHHHH
Q 032244 134 QVAGR 138 (144)
Q Consensus 134 ~iA~~ 138 (144)
.+...
T Consensus 108 ~~~~~ 112 (146)
T 2fbh_A 108 DIEAI 112 (146)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87544
No 54
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.37 E-value=0.014 Score=40.72 Aligned_cols=65 Identities=9% Similarity=0.112 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||+... .++| .||++|+..++.
T Consensus 34 iL~~l~~~~~~t~~~la~~l~~--------------s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 99 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAELIKV--------------DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHCcCcCHHHHHHHHCC--------------CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHH
Confidence 6777888899999999998873 4467888999999999998754 3344 599999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 100 ~~~~~ 104 (144)
T 1lj9_A 100 IVREN 104 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 55
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.36 E-value=0.0096 Score=46.31 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=51.8
Q ss_pred HHHHHH----hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q 032244 62 ARKIYL----RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAG 137 (144)
Q Consensus 62 lRklYl----~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA~ 137 (144)
|+.||. .+++.+..|+...|- |.+-+..+|+.||+.|||+..+.++=.||++|++...++..
T Consensus 8 L~~I~~l~~~~~~~~~~~lA~~l~v--------------s~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 8 LKCLYELGTRHNKITNKEIAQLMQV--------------SPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYR 73 (214)
T ss_dssp HHHHHHTTSSCSCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHCC--------------ChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHHH
Confidence 445555 468999999998884 34678999999999999999987788999999999888765
No 56
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.35 E-value=0.0068 Score=42.35 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCC----ceeCcchHhhHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGG----RRITSSGQRDLD 133 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gG----R~lT~~G~~~lD 133 (144)
.||..|+ ++++.++.|..... .-+.+.+-..|+.||+.|||++.. .++ -.||++|+..++
T Consensus 26 ~IL~~L~-~~~~~~~eLa~~l~-------------~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~ 91 (112)
T 1z7u_A 26 SLMDELF-QGTKRNGELMRALD-------------GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD 91 (112)
T ss_dssp HHHHHHH-HSCBCHHHHHHHST-------------TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-------------cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHH
Confidence 4777777 69999999999771 245678999999999999998665 223 378999998777
Q ss_pred HHH
Q 032244 134 QVA 136 (144)
Q Consensus 134 ~iA 136 (144)
.+.
T Consensus 92 ~~~ 94 (112)
T 1z7u_A 92 ALS 94 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 57
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=96.26 E-value=0.0053 Score=43.55 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....| -+.+-+..+|+.||+.|||++.. .++| .||++|+..++.
T Consensus 52 iL~~l~~~~~~t~~ela~~l~--------------~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERLY--------------LDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHhCCCcCHHHHHHHhC--------------CCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 677788889999999999887 24567888999999999999765 2343 589999988776
Q ss_pred HH
Q 032244 135 VA 136 (144)
Q Consensus 135 iA 136 (144)
+.
T Consensus 118 ~~ 119 (153)
T 2pex_A 118 AG 119 (153)
T ss_dssp ST
T ss_pred HH
Confidence 53
No 58
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.24 E-value=0.0064 Score=41.82 Aligned_cols=60 Identities=5% Similarity=0.073 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchh-hHHHHHHHHHhCCcceecCCCCc---eeCcchHhhH
Q 032244 58 AASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGS-VARHILHQLQDTNIIELDSKGGR---RITSSGQRDL 132 (144)
Q Consensus 58 aASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~-iiR~~LqqLE~~glv~k~~~gGR---~lT~~G~~~l 132 (144)
...||.-|.-+||..+..|++..|= +.. -+|..|+.||+.|+|++... || .||++|+..|
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~Lgi--------------t~~~aVr~hL~~Le~eGlV~~~~~-gRP~w~LT~~g~~~~ 76 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNIGL--------------TKARDINAVLIDMERQGDVYRQGT-TPPIWHLTDKKRERM 76 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHHCG--------------GGHHHHHHHHHHHHHTTSEEEECS-SSCEEEECHHHHTTT
T ss_pred HHHHHHHHHHcCCcCHHHHHHHcCC--------------CcHHHHHHHHHHHHHCCCEEecCC-CCCCeEeCHhHHhHh
Confidence 3458888888999999999999884 334 79999999999999997653 66 7899998765
No 59
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.23 E-value=0.012 Score=41.48 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=52.3
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+..+++.||+.|||+..+ .++| .||++|+..++.
T Consensus 42 iL~~l~~~~~~t~~ela~~l~~--------------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (155)
T 1s3j_A 42 VLASLKKHGSLKVSEIAERMEV--------------KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE 107 (155)
T ss_dssp HHHHHHHHSEEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHH
Confidence 6778888899999999998873 4567888999999999998764 2343 599999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 108 ~~~~~ 112 (155)
T 1s3j_A 108 VLAGR 112 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 60
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=96.20 E-value=0.0096 Score=43.16 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=49.9
Q ss_pred HHHHHHHh--CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhH
Q 032244 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~--g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~l 132 (144)
||..|+-. +++.++.|....|-. .+-+-.+++.||+.|||++.. .++| .||++|+..+
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISR--------------APDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC-----------------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCC--------------hhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 78888885 489999999987632 246778999999999999754 3344 5999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
+.+...+
T Consensus 117 ~~~~~~~ 123 (168)
T 3u2r_A 117 KDLEEPV 123 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876643
No 61
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=96.20 E-value=0.02 Score=40.51 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=47.8
Q ss_pred HHHHHHHhC-CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 61 MARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 61 ilRklYl~g-~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
||..|+-.+ ++.+..|....|- +.+-+-.+++.||+.|||++.+ .++| .||++|+..++
T Consensus 44 vL~~l~~~~~~~t~~eLa~~l~i--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 44 VLVLACEQAEGVNQRGVAATMGL--------------DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHSTTCCCSHHHHHHHTC--------------CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHCC--------------CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 677777654 7899999998873 3456778999999999999765 3344 59999999999
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
.+...+
T Consensus 110 ~~~~~~ 115 (150)
T 3fm5_A 110 DAKARV 115 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886654
No 62
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.18 E-value=0.014 Score=42.91 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCC-----CceeCcchHhhHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-----GRRITSSGQRDLDQ 134 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~g-----GR~lT~~G~~~lD~ 134 (144)
.||+.|+ .|+..++.|.+..| -|.+.+-..|+.||+.|||++.... .-.||++|+..+..
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~lg--------------is~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~ 92 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSLG--------------LAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPL 92 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHHC--------------CCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhC--------------CCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHH
Confidence 3788885 79999999999776 3567999999999999999976532 34799999987665
Q ss_pred HH
Q 032244 135 VA 136 (144)
Q Consensus 135 iA 136 (144)
+.
T Consensus 93 l~ 94 (146)
T 2f2e_A 93 LV 94 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 63
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.15 E-value=0.0072 Score=41.86 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~l 132 (144)
||..|+-.+++.+..|....|- |.+-+..+++.||+.|||++.+ .++| .||++|+..+
T Consensus 36 iL~~l~~~~~~~~~ela~~l~i--------------s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 36 ILQTLLKDAPLHQLALQERLQI--------------DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 7888888899999999998863 4467888999999999998664 2343 5999999998
No 64
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=96.09 E-value=0.00096 Score=55.34 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHH
Q 032244 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQV 135 (144)
Q Consensus 57 RaASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~i 135 (144)
|-..||..||..+++++..|...+|- |..-||..|+.||+.|+|+.... |=.||++|+..+..+
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~v--------------s~~Tv~r~l~~Le~~Glv~~~~~-gi~LT~~G~~~~~~~ 84 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGI--------------TERVLRTETDVLKQLNLIEPSKS-GMTLTERGLEVYQGL 84 (345)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEec-ceEEcHHHHHHHHHH
Confidence 44568999999999999999999885 34579999999999999985554 789999999766544
No 65
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.05 E-value=0.014 Score=40.95 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCc--hhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC--CCceeCcchHhhHHHH
Q 032244 60 SMARKIYLRGGLG--VGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GGRRITSSGQRDLDQV 135 (144)
Q Consensus 60 SilRklYl~g~~G--v~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~--gGR~lT~~G~~~lD~i 135 (144)
.||+.|. .|+.. ++.|.+... .-|.+.+-..|+.||+.|||++... ---.||++|++.+..+
T Consensus 31 ~IL~~L~-~g~~~~~~~eL~~~l~-------------gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l 96 (111)
T 3df8_A 31 LIISVLG-NGSTRQNFNDIRSSIP-------------GISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSL 96 (111)
T ss_dssp HHHHHHT-SSSSCBCHHHHHHTST-------------TCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCCCHHHHHHHcc-------------CCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHH
Confidence 4777777 88988 999999651 2466789999999999999997742 2468999999987765
Q ss_pred H
Q 032244 136 A 136 (144)
Q Consensus 136 A 136 (144)
.
T Consensus 97 ~ 97 (111)
T 3df8_A 97 M 97 (111)
T ss_dssp H
T ss_pred H
Confidence 4
No 66
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=96.02 E-value=0.013 Score=42.21 Aligned_cols=65 Identities=12% Similarity=0.202 Sum_probs=47.9
Q ss_pred HHHHHHHh--CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhH
Q 032244 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~--g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~l 132 (144)
+|..||.. +++.++.|....|-. .+-+=.+++.||+.|||++.+ .++| .||++|+..+
T Consensus 40 vL~~L~~~~~~~~t~~eLa~~l~~~--------------~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGERLMVH--------------PTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 67777764 578999999988743 345667999999999998664 4355 4899999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
+++...+
T Consensus 106 ~~~~~~~ 112 (147)
T 4b8x_A 106 EAATRDL 112 (147)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876543
No 67
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.00 E-value=0.013 Score=39.51 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHh
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQR 130 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~ 130 (144)
.||+.| .+++.++.|....|- |.+-+++.|+.||+.|+|+... |.-.||+.|+.
T Consensus 35 ~Il~~L--~~~~~~~eLa~~l~i--------------s~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~~ 88 (96)
T 1y0u_A 35 KILRML--DKGRSEEEIMQTLSL--------------SKKQLDYHLKVLEAGFCIERVG-ERWVVTDAGKI 88 (96)
T ss_dssp HHHHHH--HTTCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECTTTCC
T ss_pred HHHHHH--cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEC-CEEEECCCchH
Confidence 477777 899999999998863 4578999999999999999877 67789999864
No 68
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=95.99 E-value=0.03 Score=41.89 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=51.9
Q ss_pred HHHHHHH--hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhH
Q 032244 61 MARKIYL--RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl--~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~l 132 (144)
||..|+- .+++.++.|+...|- +.+-+-.+++.||+.|||++.. .++| .||++|+..+
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~i--------------s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGT--------------SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHhccCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 7877887 679999999998873 3456778999999999998654 3455 5999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
+++....
T Consensus 112 ~~~~~~~ 118 (189)
T 3nqo_A 112 VTCSRTG 118 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876553
No 69
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.95 E-value=0.0066 Score=42.52 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=49.5
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....| -+.+-+..+++.||+.|||+..+ .++| .||++|+..++.
T Consensus 45 iL~~l~~~~~~~~~~la~~l~--------------~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 45 ALLLLWEHETLTVKKMGEQLY--------------LDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHSEEEHHHHHHTTT--------------CCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHCCCCCHHHHHHHHC--------------CCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 677888889999999999765 24567888999999999999765 2344 589999998876
Q ss_pred HH
Q 032244 135 VA 136 (144)
Q Consensus 135 iA 136 (144)
+.
T Consensus 111 ~~ 112 (147)
T 1z91_A 111 AV 112 (147)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 70
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=95.87 E-value=0.008 Score=42.06 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc-----eeCcchHhhHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR-----RITSSGQRDLD 133 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR-----~lT~~G~~~lD 133 (144)
||..|. .+|.--..+.+.... +..-|.+.+-.+|+.||+.|||+... .+|| .||++|+..++
T Consensus 14 IL~~L~-~~~~~gyel~~~l~~----------~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~ 82 (108)
T 3l7w_A 14 ILAIVS-KHDSYGYDISQTIKL----------IASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLV 82 (108)
T ss_dssp HHHHHH-HSCEEHHHHHHHHTT----------TCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHH
T ss_pred HHHHHH-cCCCcHHHHHHHHHH----------HhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHH
Confidence 555554 466555566665542 23457788999999999999998654 2464 59999999999
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
+.....
T Consensus 83 ~~~~~~ 88 (108)
T 3l7w_A 83 YLTKEW 88 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876553
No 71
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.83 E-value=0.021 Score=40.62 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=48.1
Q ss_pred HHHHHH-HhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 61 MARKIY-LRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 61 ilRklY-l~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
||..|+ -.+++.+..|....|-.+ +-+-.+++.||+.|||++.. .++| .||++|+..++
T Consensus 52 iL~~L~~~~~~~~~~ela~~l~i~~--------------~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 117 (160)
T 3boq_A 52 AMAQLARNPDGLSMGKLSGALKVTN--------------GNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK 117 (160)
T ss_dssp HHHHHHHCTTCEEHHHHHHHCSSCC--------------SCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCh--------------hhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHH
Confidence 677785 468999999999876332 35677899999999999765 3343 59999999998
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
++...+
T Consensus 118 ~~~~~~ 123 (160)
T 3boq_A 118 QASEAH 123 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 72
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=95.80 E-value=0.064 Score=37.66 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhCCC-------chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCc
Q 032244 54 YYIRAASMARKIYLRGGL-------GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITS 126 (144)
Q Consensus 54 ~y~RaASilRklYl~g~~-------Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~ 126 (144)
.|-..+.-++..-+.|.. ....|+..||- |..-+|.+|+.||+.|+|+..+..|-.+++
T Consensus 10 ~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~v--------------Sr~tvr~al~~L~~~Gli~~~~~~G~~V~~ 75 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQI--------------NPLTVSKAYQSLLDDNVIEKRRGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECT
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEecCCeEEEeC
Confidence 456667667766666533 67789999983 567999999999999999998877999998
Q ss_pred chHhhHHHH
Q 032244 127 SGQRDLDQV 135 (144)
Q Consensus 127 ~G~~~lD~i 135 (144)
....++..+
T Consensus 76 ~~~~~~~~~ 84 (113)
T 3tqn_A 76 GARQRLLTQ 84 (113)
T ss_dssp THHHHHHHH
T ss_pred CchHHHHHH
Confidence 877665543
No 73
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.78 E-value=0.025 Score=39.54 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=50.9
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.++ .+..|....|- +.+-+-.+++.||+.|||++.+ .++| .||++|+..+++
T Consensus 42 iL~~l~~~~~-~~~~la~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (144)
T 3f3x_A 42 ILKATSEEPR-SMVYLANRYFV--------------TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLE 106 (144)
T ss_dssp HHHHHHHSCE-EHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHCC--------------ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHH
Confidence 6778888888 99999998873 3456778999999999999765 3333 599999999988
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 107 ~~~~~ 111 (144)
T 3f3x_A 107 ANEVL 111 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 74
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.78 E-value=0.028 Score=40.49 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHH
Q 032244 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLD 133 (144)
Q Consensus 59 ASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD 133 (144)
-.||..|--+|+..++.|..... ..-|..-+++-|+.||+.|||+....+=-.||++|++.|.
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~------------~giS~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDE------------IRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTT------------CCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHh------------cCCCHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHHH
Confidence 45787776679999999998651 0236678999999999999999875534699999998875
No 75
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=95.76 E-value=0.025 Score=45.04 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=46.2
Q ss_pred hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q 032244 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAG 137 (144)
Q Consensus 68 ~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA~ 137 (144)
.+|+|...|+..-|= |-..+|..++-|++.|||+..+ +|=.||++|++...++-.
T Consensus 28 ~~~V~~~~LA~~Lgv--------------S~~SV~~~lkkL~e~GLV~~~~-~Gv~LTe~G~~~A~~i~~ 82 (200)
T 2p8t_A 28 KEPLGRKQISERLEL--------------GEGSVRTLLRKLSHLDIIRSKQ-RGHFLTLKGKEIRDKLLS 82 (200)
T ss_dssp TSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEC---CEEECHHHHHHHHHHHT
T ss_pred cCCccHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEEeC-CCeEECHHHHHHHHHHHH
Confidence 589999999999883 3458999999999999999888 799999999988776643
No 76
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.70 E-value=0.022 Score=43.68 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+-.+++.+..|....|- +.+-+-.+|+.||+.|||++.. .++| .||++|+..+++
T Consensus 53 iL~~L~~~~~~t~~eLa~~l~i--------------~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 118 (207)
T 2fxa_A 53 ILWIAYQLNGASISEIAKFGVM--------------HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWS 118 (207)
T ss_dssp HHHHHHHHTSEEHHHHHHHTTC--------------CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHH
Confidence 7888888899999999998773 3456777999999999999765 3344 599999999998
Q ss_pred HHHHH
Q 032244 135 VAGRI 139 (144)
Q Consensus 135 iA~~i 139 (144)
+...+
T Consensus 119 ~~~~~ 123 (207)
T 2fxa_A 119 LLEEF 123 (207)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76543
No 77
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=95.67 E-value=0.024 Score=40.23 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=49.2
Q ss_pred HHHHHHHHh------CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC-CCCc---eeCcchH
Q 032244 60 SMARKIYLR------GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS-KGGR---RITSSGQ 129 (144)
Q Consensus 60 SilRklYl~------g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~-~gGR---~lT~~G~ 129 (144)
++|+.|... +++-...|++.-+ =+.+-+++.|..||+.|||+... .+|| .||++|+
T Consensus 20 ~vL~~L~~~~~~~~g~~~s~~eLa~~l~--------------l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~ 85 (96)
T 2obp_A 20 EVLLVLREAGIENGATPWSLPKIAKRAQ--------------LPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGA 85 (96)
T ss_dssp HHHHHHHHHTSSTTCCCCBHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHH
T ss_pred HHHHHHHHHHhhCCCCCcCHHHHHHHhC--------------CchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHH
Confidence 577777766 6788888888555 46689999999999999998654 2355 6999999
Q ss_pred hhHHHH
Q 032244 130 RDLDQV 135 (144)
Q Consensus 130 ~~lD~i 135 (144)
..+.+.
T Consensus 86 ~~l~~~ 91 (96)
T 2obp_A 86 ALAAQL 91 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 78
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=95.65 E-value=0.014 Score=40.18 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=42.5
Q ss_pred HHHHHHHHHhC-CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec----CCCCceeC
Q 032244 59 ASMARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD----SKGGRRIT 125 (144)
Q Consensus 59 ASilRklYl~g-~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~----~~gGR~lT 125 (144)
..|+..++-.| ++.+..|+..+|- |.+-+|.+|+.|++.|+|+.. +.+|+.+.
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgv--------------s~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNI--------------KVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTS--------------CHHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 45888888777 8999999998884 557899999999999999987 66675544
No 79
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.64 E-value=0.02 Score=41.52 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD~ 134 (144)
||..|+ .|+..++.|....+| -|.+.+-..|+.||+.|||++.. .++| .||++|++.+..
T Consensus 40 IL~~L~-~g~~~~~eLa~~l~g-------------is~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~ 105 (131)
T 1yyv_A 40 ILVALR-DGTHRFSDLRRXMGG-------------VSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDX 105 (131)
T ss_dssp HHHHGG-GCCEEHHHHHHHSTT-------------CCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHhcc-------------CCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHH
Confidence 677777 899999999997621 36678999999999999998654 3233 699999987765
Q ss_pred HH
Q 032244 135 VA 136 (144)
Q Consensus 135 iA 136 (144)
+.
T Consensus 106 l~ 107 (131)
T 1yyv_A 106 VA 107 (131)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 80
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.56 E-value=0.02 Score=40.75 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCCchhHHHH-HhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHH
Q 032244 58 AASMARKIYLRGGLGVGSFRR-IYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVA 136 (144)
Q Consensus 58 aASilRklYl~g~~Gv~~l~~-~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA 136 (144)
-.|||++|+-++++.++.|.. .-+- ..+.+=.-++-||+.|||+.+.+ +=.||++|+..+...+
T Consensus 18 QfsiL~~L~~~~~~t~~~Lae~~l~~--------------drstvsrnl~~L~r~GlVe~~~~-Dl~LT~~G~~~l~~a~ 82 (95)
T 1bja_A 18 TATILITIAKKDFITAAEVREVHPDL--------------GNAVVNSNIGVLIKKGLVEKSGD-GLIITGEAQDIISNAA 82 (95)
T ss_dssp HHHHHHHHHHSTTBCHHHHHHTCTTS--------------CHHHHHHHHHHHHTTTSEEEETT-EEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhcc--------------cHHHHHHHHHHHHHCCCeecCCC-CeeeCHhHHHHHHHHH
Confidence 368999999999999999998 4443 22456667899999999994444 5679999999998875
Q ss_pred H
Q 032244 137 G 137 (144)
Q Consensus 137 ~ 137 (144)
.
T Consensus 83 ~ 83 (95)
T 1bja_A 83 T 83 (95)
T ss_dssp H
T ss_pred H
Confidence 4
No 81
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=95.55 E-value=0.023 Score=39.12 Aligned_cols=67 Identities=7% Similarity=0.081 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCc----eeCcchHhhHHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGR----RITSSGQRDLDQV 135 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR----~lT~~G~~~lD~i 135 (144)
.||..|+-.+++.+..|....|-. . .-+.+-+-.+|+.||+.|||++.+++.| .||++|+..++.+
T Consensus 14 ~vL~~l~~~~~~t~~ela~~l~~~--~--------~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~ 83 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQ--K--------DWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS 83 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHH--C--------CCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHhcc--C--------CCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHH
Confidence 367777778999999999998732 1 1245678999999999999998776332 4899999887665
Q ss_pred H
Q 032244 136 A 136 (144)
Q Consensus 136 A 136 (144)
.
T Consensus 84 ~ 84 (123)
T 1okr_A 84 K 84 (123)
T ss_dssp H
T ss_pred H
Confidence 3
No 82
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.55 E-value=0.049 Score=38.51 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHh---CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCceeCcchHh
Q 032244 57 RAASMARKIYLR---GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGRRITSSGQR 130 (144)
Q Consensus 57 RaASilRklYl~---g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR~lT~~G~~ 130 (144)
+|..+|..|..+ +++.+..|+..+|- |.+.++++|++|+++|||+... .||..|+.....
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i--------------~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNL--------------SEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTS--------------CHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHH
Confidence 466778777764 57999999998874 4579999999999999999764 478899876544
No 83
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=95.48 E-value=0.033 Score=46.65 Aligned_cols=66 Identities=11% Similarity=0.218 Sum_probs=46.0
Q ss_pred HHHHHHHh--CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec--CCCCc----eeCcchHhhH
Q 032244 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD--SKGGR----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~--g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~--~~gGR----~lT~~G~~~l 132 (144)
||+.|+-+ +++.+..|+.. ..-+.+-+=.+|+.||+.|||++. +++.| .||++|+..+
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~--------------~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKC--------------SEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHS--------------SCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHhCCCCCcCHHHHHHH--------------HCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 55555555 55566666653 233445677789999999999864 44455 4799999999
Q ss_pred HHHHHHHh
Q 032244 133 DQVAGRIA 140 (144)
Q Consensus 133 D~iA~~i~ 140 (144)
+++...+.
T Consensus 475 ~~~~~~~~ 482 (487)
T 1hsj_A 475 QKLISELE 482 (487)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHH
Confidence 98877654
No 84
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=95.38 E-value=0.029 Score=41.25 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=46.3
Q ss_pred HHHHHHHhCC---CchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhh
Q 032244 61 MARKIYLRGG---LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRD 131 (144)
Q Consensus 61 ilRklYl~g~---~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~ 131 (144)
||..|+-.++ +.+..|....|-. .+-+-.+|+.||+.|||++.. .++| .||++|+..
T Consensus 74 iL~~L~~~~~~~~~t~~eLa~~l~is--------------~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~ 139 (181)
T 2fbk_A 74 LLLTLYRSAPPEGLRPTELSALAAIS--------------GPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRAL 139 (181)
T ss_dssp HHHHHHHHCCSSCBCHHHHHHHCSCC--------------SGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHH
Confidence 6777777664 8888888876532 234556889999999999764 2233 699999999
Q ss_pred HHHHHHHH
Q 032244 132 LDQVAGRI 139 (144)
Q Consensus 132 lD~iA~~i 139 (144)
++++...+
T Consensus 140 ~~~~~~~~ 147 (181)
T 2fbk_A 140 VTHLLPAH 147 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98875543
No 85
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=95.36 E-value=0.12 Score=36.85 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhCCC-------chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCc
Q 032244 54 YYIRAASMARKIYLRGGL-------GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITS 126 (144)
Q Consensus 54 ~y~RaASilRklYl~g~~-------Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~ 126 (144)
.|...+.-|+.--+.|.. ....|+..||- |..-+|.+|+.|+..|+|+..+..|-.+++
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAV--------------NPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCeEEEecCCEEEEec
Confidence 566677777776666533 58899999983 567999999999999999999877888888
Q ss_pred ch
Q 032244 127 SG 128 (144)
Q Consensus 127 ~G 128 (144)
.-
T Consensus 80 ~~ 81 (125)
T 3neu_A 80 DK 81 (125)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 86
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=95.24 E-value=0.13 Score=37.26 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=47.7
Q ss_pred HHHHHHHhC-CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhHH
Q 032244 61 MARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDLD 133 (144)
Q Consensus 61 ilRklYl~g-~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~lD 133 (144)
+|..|+-.+ ++..+.|....|- +.+-+=.+++.||+.|||++.+ .++| .||++|+..++
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~--------------~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGI--------------EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCc--------------CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 677777654 4555788887773 3345777899999999998554 4455 48999999999
Q ss_pred HHHHHH
Q 032244 134 QVAGRI 139 (144)
Q Consensus 134 ~iA~~i 139 (144)
++...+
T Consensus 102 ~~~~~~ 107 (151)
T 4aik_A 102 QVDGVI 107 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 87
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=95.23 E-value=0.056 Score=40.63 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC---CCC-----ceeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGG-----RRITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~---~gG-----R~lT~~G~~~l 132 (144)
||.-|. .+|.--..|.+.+...- .++...|-+.|-..|+.||+.|||+... ++| -.||++|+..+
T Consensus 7 iL~lL~-~~~~~gyel~~~l~~~~------~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l 79 (179)
T 1yg2_A 7 ILTVLS-TRDATGYDITKEFSASI------GYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSAL 79 (179)
T ss_dssp HHHHHH-HCCBCHHHHHHHHTTGG------GGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHH
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHh------CCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHH
Confidence 565555 58888888999886322 2466778889999999999999998654 222 47999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
.+...+.
T Consensus 80 ~~~~~~~ 86 (179)
T 1yg2_A 80 GEWFDQP 86 (179)
T ss_dssp HHHHHSC
T ss_pred HHHHhCc
Confidence 8865543
No 88
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=95.19 E-value=0.027 Score=40.01 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=45.6
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC---CCCc-----eeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGGR-----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~---~gGR-----~lT~~G~~~l 132 (144)
||.-|. .+|.---.+.+.....- ..+-.-|.+.+-.+|+.||+.|||+... .+|+ .||++|++.+
T Consensus 17 IL~~L~-~~~~~Gyei~~~l~~~~------~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 17 LLNVLK-QGDNYVYGIIKQVKEAS------NGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENM 89 (116)
T ss_dssp HHHHHH-HCCBCHHHHHHHHHHHT------TTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHH
T ss_pred HHHHHH-hCCCCHHHHHHHHHHHh------CCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHH
Confidence 454444 45643344444433211 1234567788999999999999998652 2342 6999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
+......
T Consensus 90 ~~~~~~~ 96 (116)
T 3f8b_A 90 RLAFESW 96 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876553
No 89
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.14 E-value=0.03 Score=41.68 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCC----ceeCcchHhhHHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGG----RRITSSGQRDLDQV 135 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gG----R~lT~~G~~~lD~i 135 (144)
.||+.|. +++..++.|....|- |.+-+.+-|+.||++|||+...+ | -.||++|...+-.+
T Consensus 62 ~IL~~L~-~~~~t~~eLa~~lgl--------------s~stvs~hL~~L~~aGlV~~~~~-Gr~~~y~lt~~~~~~l~~~ 125 (151)
T 3f6v_A 62 RLVQLLT-SGEQTVNNLAAHFPA--------------SRSAISQHLRVLTEAGLVTPRKD-GRFRYYRLDPQGLAQLRAL 125 (151)
T ss_dssp HHHHHGG-GCCEEHHHHHTTSSS--------------CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEec-CCEEEEEEChHHHHHHHHH
Confidence 4787777 899999999997763 45789999999999999998775 5 46999998877665
Q ss_pred HHHH
Q 032244 136 AGRI 139 (144)
Q Consensus 136 A~~i 139 (144)
..++
T Consensus 126 l~~~ 129 (151)
T 3f6v_A 126 FDSF 129 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 90
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=95.03 E-value=0.18 Score=33.92 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGG---RRITSSGQRDLDQVA 136 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gG---R~lT~~G~~~lD~iA 136 (144)
.||+.| .+|+..++.|....|- |.+-+.+.|+.||+.|||+....|. ..||+.+-..+=+..
T Consensus 27 ~Il~~L-~~~~~~~~ela~~l~i--------------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l 91 (102)
T 3pqk_A 27 MLVCTL-VEGEFSVGELEQQIGI--------------GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNAL 91 (102)
T ss_dssp HHHHHH-HTCCBCHHHHHHHHTC--------------CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHH
T ss_pred HHHHHH-HhCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHH
Confidence 477777 5799999999998874 3357999999999999999877632 568887665544333
Q ss_pred HH
Q 032244 137 GR 138 (144)
Q Consensus 137 ~~ 138 (144)
.+
T Consensus 92 ~~ 93 (102)
T 3pqk_A 92 YT 93 (102)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 91
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=95.02 E-value=0.11 Score=37.22 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhCC------C-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCc
Q 032244 54 YYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITS 126 (144)
Q Consensus 54 ~y~RaASilRklYl~g~------~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~ 126 (144)
.|-..+..||..-+.|. + ....|+..||- |..-+|.+|+.||..|+|+..+..|-.+++
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKI--------------NPNTVAKAYKELEAQKVIRTIPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEecCCeEEEcc
Confidence 46677777777666653 3 78899999983 567999999999999999999877988988
No 92
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=95.01 E-value=0.021 Score=40.07 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=44.0
Q ss_pred chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCceeCcchHhhHHHHH
Q 032244 72 GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGRRITSSGQRDLDQVA 136 (144)
Q Consensus 72 Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR~lT~~G~~~lD~iA 136 (144)
.+..|...||- |..-+|.+|+.||+.|+|+..+ ..|-.+++.+..++..+.
T Consensus 45 s~~eLa~~lgV--------------Sr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 45 VASKIADRVGI--------------TRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 78899999983 5689999999999999999888 459999998888877664
No 93
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=94.84 E-value=0.15 Score=35.99 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCc----eeCcchHhhHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGR----RITSSGQRDLDQ 134 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR----~lT~~G~~~lD~ 134 (144)
.||..|.-.++..++.|....|- |.+-+.+.|+.||+.|||+.... || .||+.+...+-+
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~i--------------s~stvs~~L~~L~~~Glv~~~~~-gr~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGV--------------TIANASHHLRTLYKQGVVNFRKE-GKLALYSLGDEHIRQIMM 109 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEC-----CCEEEESCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEE-CCEEEEEECHHHHHHHHH
Confidence 47777766799999999998873 45688999999999999998775 44 688887655433
No 94
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=94.79 E-value=0.081 Score=38.23 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=40.3
Q ss_pred HHHHHHHhC-----CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec-CCCCc----eeCcchHh
Q 032244 61 MARKIYLRG-----GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD-SKGGR----RITSSGQR 130 (144)
Q Consensus 61 ilRklYl~g-----~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~-~~gGR----~lT~~G~~ 130 (144)
||..|+..+ ++.++.|....|- +.+-+=.+++.||+.|||+.. +.++| .||++|+.
T Consensus 38 vL~~l~~~~~~~~~~~t~~eLa~~l~~--------------~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~ 103 (148)
T 4fx0_A 38 TLAVISLSEGSAGIDLTMSELAARIGV--------------ERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRA 103 (148)
T ss_dssp HHHHHHC---------CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSBC-----------CCBCHHHHH
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHCC--------------ChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHH
Confidence 566666553 4677888887763 234566789999999999643 23354 58999999
Q ss_pred hHHHHHH
Q 032244 131 DLDQVAG 137 (144)
Q Consensus 131 ~lD~iA~ 137 (144)
.++++..
T Consensus 104 ~~~~~~~ 110 (148)
T 4fx0_A 104 ALQKAVP 110 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 95
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=94.48 E-value=0.16 Score=34.76 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCc----eeCcchHhhH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGR----RITSSGQRDL 132 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR----~lT~~G~~~l 132 (144)
.|+..|. +++..++.|....|- |.+-+.+.|+.||+.|+|+.... || .||+.+-..+
T Consensus 30 ~IL~~L~-~~~~~~~ela~~l~i--------------s~stvs~~L~~L~~~Glv~~~~~-gr~~~y~l~~~~~~~~ 90 (106)
T 1r1u_A 30 RIMELLS-VSEASVGHISHQLNL--------------SQSNVSHQLKLLKSVHLVKAKRQ-GQSMIYSLDDIHVATM 90 (106)
T ss_dssp HHHHHHH-HCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEESSHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEEChHHHHHH
Confidence 4777776 899999999998873 44689999999999999997765 44 5787775433
No 96
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=94.36 E-value=0.092 Score=36.31 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGG---RRITSSGQRDLDQV 135 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gG---R~lT~~G~~~lD~i 135 (144)
.||.-|. .+++.++.|....|- |.+-+...|+.||+.|+|+...+|. ..||+++...+=+.
T Consensus 29 ~IL~~L~-~~~~s~~eLa~~lgi--------------s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~ 92 (108)
T 2kko_A 29 QILDLLA-QGERAVEAIATATGM--------------NLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFAL 92 (108)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHH
T ss_pred HHHHHHH-cCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 4666565 689999999998873 4468999999999999999776532 36899886554333
No 97
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=94.33 E-value=0.056 Score=42.02 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=45.1
Q ss_pred CCch--hHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHH
Q 032244 70 GLGV--GSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAG 137 (144)
Q Consensus 70 ~~Gv--~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA~ 137 (144)
++.. ..|+...|- |.+-+..+|+.||+.|||+..++.+=.||++|+..+..+..
T Consensus 22 ~~~~~~~~La~~l~v--------------s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~~ 77 (230)
T 1fx7_A 22 GVTPLRARIAERLDQ--------------SGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMR 77 (230)
T ss_dssp TSCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHHHHH
Confidence 5666 899998763 45678999999999999999887678999999999887653
No 98
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=94.29 E-value=0.16 Score=36.66 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhCC------C-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcc
Q 032244 55 YIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSS 127 (144)
Q Consensus 55 y~RaASilRklYl~g~------~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~ 127 (144)
|-..+.-++..-+.|. + ....|+..||- |..-+|.+|+.||..|+|+..+..|-.+++.
T Consensus 6 ~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gv--------------Sr~tVr~Al~~L~~~Gli~~~~g~G~~V~~~ 71 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRI--------------NPATARNGLTLLVEAGILYKKRGIGMFVSAQ 71 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTC--------------CHHHHHHHHHHHHTTTSEEEETTTEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEecCCEEEEecC
Confidence 4455555555555543 2 67788998883 5679999999999999999998779899887
Q ss_pred hHhhH
Q 032244 128 GQRDL 132 (144)
Q Consensus 128 G~~~l 132 (144)
...++
T Consensus 72 ~~~~~ 76 (129)
T 2ek5_A 72 APALI 76 (129)
T ss_dssp HHHHH
T ss_pred chHhh
Confidence 65554
No 99
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.27 E-value=0.12 Score=34.90 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHh------CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCcee
Q 032244 57 RAASMARKIYLR------GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRI 124 (144)
Q Consensus 57 RaASilRklYl~------g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~l 124 (144)
|...||--|--. +|+.|..++..+| . |-+-||.-|..||+.|+|+.++ |||.+
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lg-----------v---S~~TVrr~L~~Le~kG~I~R~~-ggr~~ 63 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAG-----------L---SIYQVRLYLEQLHDVGVLEKVN-AGKGV 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHT-----------C---CHHHHHHHHHHHHHTTSEEEES-CSSSS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHC-----------C---CHHHHHHHHHHHHHCCcEEecC-CCCCc
Confidence 555666666666 8999999999998 3 3456999999999999999998 46654
No 100
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=94.22 E-value=0.18 Score=33.59 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGG---RRITSSGQRDLDQVA 136 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gG---R~lT~~G~~~lD~iA 136 (144)
.|++.|. +++..++.|....|- |.+-+.+-|+.||+.|+|+....|. ..||+.+-..+-...
T Consensus 27 ~Il~~L~-~~~~~~~ela~~l~i--------------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l 91 (98)
T 3jth_A 27 QILCMLH-NQELSVGELCAKLQL--------------SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLL 91 (98)
T ss_dssp HHHHHTT-TSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHH
Confidence 4676665 489999999998873 5578999999999999999887632 358888766655554
Q ss_pred HHH
Q 032244 137 GRI 139 (144)
Q Consensus 137 ~~i 139 (144)
.++
T Consensus 92 ~~~ 94 (98)
T 3jth_A 92 HSL 94 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 101
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=94.20 E-value=0.078 Score=37.68 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=49.4
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC---CCCc-----eeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGGR-----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~---~gGR-----~lT~~G~~~l 132 (144)
||--|. .+|.---.|.+.... . .+..-|.+.|-.+|+.||+.|||+... .+|+ .||++|++.|
T Consensus 14 IL~~L~-~~~~~Gyei~~~l~~---~-----~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 14 ILYIIS-QEEVYGYELSTKLNK---H-----GFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHH-HSCEEHHHHHHHHHH---T-----TCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHH---c-----CCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 454444 566655566666553 1 245667889999999999999998643 2342 4999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
+....+.
T Consensus 85 ~~~~~~~ 91 (115)
T 4esb_A 85 EEFKQSW 91 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876654
No 102
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=93.88 E-value=0.13 Score=33.71 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
.|+.-|.-.+++.+..|+..+|- |.+-+|..|+.||+.|+|+...
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgv--------------s~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAV--------------TDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEec
Confidence 46776776789999999999984 4568999999999999999654
No 103
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=93.86 E-value=0.21 Score=40.03 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC-CCceeCcchHhhHHH
Q 032244 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GGRRITSSGQRDLDQ 134 (144)
Q Consensus 57 RaASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~-gGR~lT~~G~~~lD~ 134 (144)
....||..|.-++++++..|++..|- +.+-+...|+.||+.|||++..+ ..-.||++|+.....
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl--------------sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~ 217 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK--------------SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKL 217 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHH
Confidence 45568988888999999999999884 44678899999999999998743 246899999997654
No 104
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=93.83 E-value=0.071 Score=39.51 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC---CCc-----eeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK---GGR-----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~---gGR-----~lT~~G~~~l 132 (144)
||.-|. .+|.--..|.+..+..-. .+..-+-+.|-.+|+.||+.|||+.... +|+ .||++|++.+
T Consensus 46 IL~~L~-~~~~~gyeI~~~l~~~~~------~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 118 (145)
T 1xma_A 46 ILSLLI-EGDSYGYEISKNIRIKTD------ELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYY 118 (145)
T ss_dssp HHHHHH-HCCEEHHHHHHHHHHHHT------TSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHH
T ss_pred HHHHHH-hCCCCHHHHHHHHHHhhC------CccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHH
Confidence 666665 467655555554432110 1234677899999999999999986531 242 7999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
.....+.
T Consensus 119 ~~~~~~~ 125 (145)
T 1xma_A 119 KQKCEEW 125 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876554
No 105
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=93.75 E-value=0.19 Score=35.09 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGG---RRITSSGQRDLDQVA 136 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gG---R~lT~~G~~~lD~iA 136 (144)
.||+.|. +++..++.|....| -|.+-+.+-|+.||+.|||+....|. -.||+.|...+....
T Consensus 22 ~Il~~L~-~~~~~~~eLa~~l~--------------is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~ 86 (118)
T 3f6o_A 22 AVLGRLS-RGPATVSELAKPFD--------------MALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWL 86 (118)
T ss_dssp HHHHHHH-TCCEEHHHHHTTCC--------------SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhC--------------cCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHH
Confidence 3777776 89999999999665 35578889999999999998776532 468999988776655
Q ss_pred HH
Q 032244 137 GR 138 (144)
Q Consensus 137 ~~ 138 (144)
.+
T Consensus 87 ~~ 88 (118)
T 3f6o_A 87 AE 88 (118)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 106
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=93.73 E-value=0.078 Score=41.27 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=48.8
Q ss_pred HHHHHHHHh--CCCch--hHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHH
Q 032244 60 SMARKIYLR--GGLGV--GSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQV 135 (144)
Q Consensus 60 SilRklYl~--g~~Gv--~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~i 135 (144)
.+|+.||.- .++.+ ..|+...|- +.+-+..+|+.||+.|||+..+..+=.||++|+....++
T Consensus 10 ~yL~~i~~l~~~~~~~~~~~la~~l~v--------------s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~ 75 (226)
T 2qq9_A 10 MYLRTIYELEEEGVTPLRARIAERLEQ--------------SGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAV 75 (226)
T ss_dssp HHHHHHHHHHHHTCCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCccHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHH
Confidence 346666652 24444 889887773 335677799999999999998876789999999998877
Q ss_pred HH
Q 032244 136 AG 137 (144)
Q Consensus 136 A~ 137 (144)
..
T Consensus 76 ~~ 77 (226)
T 2qq9_A 76 MR 77 (226)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 107
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=93.72 E-value=0.065 Score=36.54 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhC-----C-C-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCc
Q 032244 54 YYIRAASMARKIYLRG-----G-L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITS 126 (144)
Q Consensus 54 ~y~RaASilRklYl~g-----~-~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~ 126 (144)
.|-..+.-+|..-+.+ . + .+..|+..||- |..-+|.+|+.||+.|+|+..+..|..+++
T Consensus 12 ~~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v--------------Sr~tvr~al~~L~~~Gli~~~~g~G~~v~~ 77 (102)
T 1v4r_A 12 GYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGV--------------AAKTVSRALAVLKSEGLVSSRGALGTVVEK 77 (102)
T ss_dssp CHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS--------------CTTHHHHHTTTTTTSSCCEEETTTEEESCS
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCCeEEEcc
Confidence 3556666565544442 2 3 78899998884 456999999999999999988866877776
Q ss_pred ch
Q 032244 127 SG 128 (144)
Q Consensus 127 ~G 128 (144)
..
T Consensus 78 ~~ 79 (102)
T 1v4r_A 78 NP 79 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 108
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=93.68 E-value=0.13 Score=36.01 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCc----eeCcchHh
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGR----RITSSGQR 130 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR----~lT~~G~~ 130 (144)
.||+.|. .++..++.|....|- |.+-+.+.|+.||+.|||+...+ || .||+.+-.
T Consensus 25 ~IL~~L~-~~~~~~~eLa~~lgi--------------s~stvs~~L~~L~~~GlV~~~~~-gr~~~y~l~~~~~~ 83 (118)
T 2jsc_A 25 RILVALL-DGVCYPGQLAAHLGL--------------TRSNVSNHLSCLRGCGLVVATYE-GRQVRYALADSHLA 83 (118)
T ss_dssp HHHHHHH-TTCCSTTTHHHHHSS--------------CHHHHHHHHHHHTTTTSEEEEEC-SSSEEEEESSHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCceEEEEE-CCEEEEEEChHHHH
Confidence 4777666 789999999998873 45789999999999999997765 44 57876543
No 109
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=93.65 E-value=0.13 Score=36.62 Aligned_cols=70 Identities=21% Similarity=0.240 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC---CCC-----ceeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGG-----RRITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~---~gG-----R~lT~~G~~~l 132 (144)
||.-|. .+|.---.|.+.... . .+..-|-+.|-.+|+.||+.|||+... .+| -.||++|++.|
T Consensus 18 IL~lL~-~~p~~Gyei~~~l~~---~-----g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l 88 (116)
T 3hhh_A 18 VLAIIQ-RKETYGYEITKILND---Q-----GFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAEL 88 (116)
T ss_dssp HHHHHH-HSCBCHHHHHHHHHT---T-----SCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHH
T ss_pred HHHHHh-cCCCCHHHHHHHHHH---c-----CCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence 444443 566544566666653 2 245667889999999999999998653 234 35999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
.....+.
T Consensus 89 ~~~~~~~ 95 (116)
T 3hhh_A 89 ADFWQRW 95 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8866553
No 110
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=93.65 E-value=0.082 Score=40.41 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhCC------CchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcch
Q 032244 55 YIRAASMARKIYLRGG------LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSG 128 (144)
Q Consensus 55 y~RaASilRklYl~g~------~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G 128 (144)
+-.++.-||.--+.|. +....|+..|| -|...+|.+|+.||..|||+..+..|-.+++-.
T Consensus 18 ~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lg--------------VSRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~ 83 (222)
T 3ihu_A 18 SDTVFFGIMSGLELGTFVPGQRLVETDLVAHFG--------------VGRNSVREALQRLAAEGIVDLQRHRGAVIRRLS 83 (222)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEECSTTCEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEecCCCeEEecCC
Confidence 3344445555555542 44677999998 467899999999999999999987798888877
Q ss_pred HhhHHHH
Q 032244 129 QRDLDQV 135 (144)
Q Consensus 129 ~~~lD~i 135 (144)
..++..+
T Consensus 84 ~~~~~e~ 90 (222)
T 3ihu_A 84 LQETLDV 90 (222)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 111
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=93.52 E-value=0.067 Score=38.39 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhCCC-------chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcc
Q 032244 55 YIRAASMARKIYLRGGL-------GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSS 127 (144)
Q Consensus 55 y~RaASilRklYl~g~~-------Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~ 127 (144)
|-..+.-|+..-+.|.. ....|+..|| -|..-+|.+|+.||..|+|+..+..|-.+++.
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~--------------vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~ 78 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVE--------------VNANTVMRSYEYLQSQEVIYNKRGIGFFVASG 78 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC---------------CCSGGGHHHHHHHHTTTSEEEETTTEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCcEEEEcCCccEEccC
Confidence 34555556665555532 3445666555 36679999999999999999999779999998
Q ss_pred hHhhHHHHH
Q 032244 128 GQRDLDQVA 136 (144)
Q Consensus 128 G~~~lD~iA 136 (144)
...++..+.
T Consensus 79 ~~~~~~~~~ 87 (126)
T 3ic7_A 79 AKMLIHSLR 87 (126)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 776655543
No 112
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=93.49 E-value=0.12 Score=36.21 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=35.9
Q ss_pred CchhhHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHHHHHHHh
Q 032244 96 SSGSVARHILHQLQDTNIIELDSKGG---RRITSSGQRDLDQVAGRIA 140 (144)
Q Consensus 96 asg~iiR~~LqqLE~~glv~k~~~gG---R~lT~~G~~~lD~iA~~i~ 140 (144)
-|-+.|=.+|+.||+.|||+...+.. -.||++|++.|.+...+..
T Consensus 42 is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~~ 89 (99)
T 2co5_A 42 ISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFFK 89 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhHH
Confidence 45677888999999999999776223 4799999999998877653
No 113
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.46 E-value=0.29 Score=32.10 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 61 MARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 61 ilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
+|..++- .+++.+..|...+|- |.+-++.+|+.||+.|||+...
T Consensus 26 ~l~~l~~~~~~~t~~ela~~l~i--------------s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 26 VLLKMVEIEKPITSEELADIFKL--------------SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEeec
Confidence 5555655 789999999999873 4568999999999999998764
No 114
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=93.27 E-value=0.064 Score=37.84 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=49.0
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCch-hhHHHHHHHHHhCCcceecC--CCC-----ceeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSG-SVARHILHQLQDTNIIELDS--KGG-----RRITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg-~iiR~~LqqLE~~glv~k~~--~gG-----R~lT~~G~~~l 132 (144)
||.-|. .+|.-...|.+.... .|.- . ..-+- +.+-.+|+.||+.|||+... .+| -.||++|++.+
T Consensus 18 IL~~L~-~~~~~gyel~~~l~~---~g~~--~-~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l 90 (118)
T 2esh_A 18 ILLLVA-EKPSHGYELAERLAE---FGIE--I-PGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYL 90 (118)
T ss_dssp HHHHHH-HSCBCHHHHHHHHHT---TCCS--S-TTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHH---hCCc--c-cCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHH
Confidence 566564 477777777777753 2210 0 12455 67889999999999998653 124 27999999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
.....+.
T Consensus 91 ~~~~~~~ 97 (118)
T 2esh_A 91 REILRSL 97 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876553
No 115
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=93.27 E-value=0.36 Score=37.75 Aligned_cols=60 Identities=12% Similarity=-0.024 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhC-CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchH
Q 032244 56 IRAASMARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQ 129 (144)
Q Consensus 56 ~RaASilRklYl~g-~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~ 129 (144)
-|+..||..|.-.+ ++++..|....|- +.+-+..+|+.||+.|||+++..+.-.|+++..
T Consensus 8 ~r~l~iL~~l~~~~~~~~~~ela~~~gl--------------~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~ 68 (249)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKFNM--------------SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECTHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEECCCCcEEECHHHH
Confidence 48889998887665 7999999998874 446888999999999999988545678888643
No 116
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=93.25 E-value=0.2 Score=40.10 Aligned_cols=65 Identities=9% Similarity=0.099 Sum_probs=45.7
Q ss_pred HHHHHHHhC--CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCc----eeCcchHhhH
Q 032244 61 MARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGR----RITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g--~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR----~lT~~G~~~l 132 (144)
||..|+-.+ ++..+.|....+ -+.+-+=.+++.||+.|||++.+ .++| .||++|+..+
T Consensus 163 vL~~L~~~~~~~~t~~eLa~~l~--------------i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 163 ILAIITSQNKNIVLLKDLIETIH--------------HKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHTTTTCCEEHHHHHHHSS--------------SCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHhCCCCCcCHHHHHHHHC--------------CChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 555555544 366666666544 23345667899999999998654 4465 4899999999
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
+++...+
T Consensus 229 ~~~~~~~ 235 (250)
T 1p4x_A 229 EQLLAQV 235 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887665
No 117
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=93.24 E-value=0.11 Score=37.02 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=45.6
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC---CCC-----ceeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGG-----RRITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~---~gG-----R~lT~~G~~~l 132 (144)
||--|. .+|.---.|.+..... | +..-|-+.|-.+|+.||+.|||+... .+| -.||++|++.|
T Consensus 16 IL~lL~-~~p~~Gyei~~~l~~~---g-----~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 86 (117)
T 4esf_A 16 VLEIIS-RRETYGYEITRHLNDL---G-----FTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQEL 86 (117)
T ss_dssp HHHHHH-HSCBCHHHHHHHHHHH---T-----CTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHHc---C-----CCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHH
Confidence 443333 5665444555554321 2 34567789999999999999998653 234 35999999999
Q ss_pred HHHHHH
Q 032244 133 DQVAGR 138 (144)
Q Consensus 133 D~iA~~ 138 (144)
.....+
T Consensus 87 ~~~~~~ 92 (117)
T 4esf_A 87 ELFWKK 92 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886654
No 118
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=93.17 E-value=0.52 Score=32.26 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=47.0
Q ss_pred HHHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CC--CceeCcchHhhHHH
Q 032244 60 SMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KG--GRRITSSGQRDLDQ 134 (144)
Q Consensus 60 SilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~g--GR~lT~~G~~~lD~ 134 (144)
.++.-|++ .+++.+..|....|- +.+-+..+|+.||+.|||+..+ .+ ...++..|...+..
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l~~--------------~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~~~~~~~~ 95 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEELKI--------------SKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKD 95 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecchHHHHHH
Confidence 36666775 689999999999883 4467889999999999999863 22 34677777655555
Q ss_pred HH
Q 032244 135 VA 136 (144)
Q Consensus 135 iA 136 (144)
+.
T Consensus 96 ~~ 97 (152)
T 1ku9_A 96 IA 97 (152)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 119
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=93.11 E-value=0.25 Score=35.43 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhCC------C-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCc
Q 032244 54 YYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITS 126 (144)
Q Consensus 54 ~y~RaASilRklYl~g~------~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~ 126 (144)
.|...+.-||..-+.|. + ....|+..|| -|..-+|.+|++||..|||+..+..|-.+++
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~g--------------VSr~tVReAl~~L~~eGlv~~~~g~G~~V~~ 80 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIG--------------VNPNTVSKAYQELERQEVIITVKGKGTFIAN 80 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHC--------------CCHHHHHHHHHHHHHCCcEEEEcCcEEEEeC
Confidence 57777777777767653 2 5668999998 3667999999999999999988866877765
Q ss_pred ch
Q 032244 127 SG 128 (144)
Q Consensus 127 ~G 128 (144)
..
T Consensus 81 ~~ 82 (134)
T 4ham_A 81 QT 82 (134)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 120
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=93.08 E-value=0.098 Score=43.05 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHH---h---CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCC---CceeCc
Q 032244 56 IRAASMARKIYL---R---GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG---GRRITS 126 (144)
Q Consensus 56 ~RaASilRklYl---~---g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~g---GR~lT~ 126 (144)
+|+-|++--||- . +.+-++.|-...+. -.=+...+|.+|.-|++.||++....| +..||+
T Consensus 22 ~~a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~-----------~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~ 90 (266)
T 3l09_A 22 LKLWSVLVTCLGDVSRDGVIEVSGVALSSFVER-----------MGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSD 90 (266)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCEEHHHHHHHHHH-----------TTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred CChhHHHHHHHHHHhccCCCcccHHHHHHHHHH-----------cCCCchHHHHHHHHHHHCCCeeeeecCCcceEEECH
Confidence 588999999993 2 46888887766652 223457899999999999999987764 578999
Q ss_pred chHhhHHHHHHHHhh
Q 032244 127 SGQRDLDQVAGRIAV 141 (144)
Q Consensus 127 ~G~~~lD~iA~~i~~ 141 (144)
.|++.+++....|..
T Consensus 91 ~g~~~l~~~~~ri~~ 105 (266)
T 3l09_A 91 SALTQTRAVAGRIYG 105 (266)
T ss_dssp HHHHHHHTTHHHHHS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999988877765
No 121
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=92.83 E-value=0.078 Score=40.41 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCC------CchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHh
Q 032244 57 RAASMARKIYLRGG------LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQR 130 (144)
Q Consensus 57 RaASilRklYl~g~------~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~ 130 (144)
.++.-||.--+.|. +....|+..|| -|..-+|.+|+.||..|||+..+..|-.+++-...
T Consensus 16 ~v~~~l~~~I~~g~l~pG~~L~e~~La~~lg--------------VSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~ 81 (218)
T 3sxy_A 16 KVYNLLKEMILNHELKLGEKLNVRELSEKLG--------------ISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEK 81 (218)
T ss_dssp HHHHHHHHHHHTTSSCTTCEECHHHHHHHHT--------------CCHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHH
T ss_pred HHHHHHHHHHHhCCCCCCCEeCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCHH
Confidence 34445555555542 45678999999 46789999999999999999998779888887776
Q ss_pred hHHHH
Q 032244 131 DLDQV 135 (144)
Q Consensus 131 ~lD~i 135 (144)
++..+
T Consensus 82 ~~~el 86 (218)
T 3sxy_A 82 FIRET 86 (218)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 122
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=92.82 E-value=0.14 Score=36.30 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=36.9
Q ss_pred CCCCchhhHHHHHHHHHhCCcceecC----CCC-----ceeCcchHhhHHHHHHHH
Q 032244 93 FSKSSGSVARHILHQLQDTNIIELDS----KGG-----RRITSSGQRDLDQVAGRI 139 (144)
Q Consensus 93 ~~~asg~iiR~~LqqLE~~glv~k~~----~gG-----R~lT~~G~~~lD~iA~~i 139 (144)
+..-|-+.|-.+|+.||+.|||+... .+| -.||++|++.+.....+.
T Consensus 51 ~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~ 106 (115)
T 2dql_A 51 TYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARLW 106 (115)
T ss_dssp TEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 34567788999999999999998652 224 379999999998876654
No 123
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=92.80 E-value=0.25 Score=38.64 Aligned_cols=59 Identities=25% Similarity=0.382 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhC-CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC-CCceeCcch
Q 032244 56 IRAASMARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GGRRITSSG 128 (144)
Q Consensus 56 ~RaASilRklYl~g-~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~-gGR~lT~~G 128 (144)
-|+..||+.|.-.+ ++++..|....|- +.+-+..+|+.||+.|||+++++ +...|+++.
T Consensus 6 ~r~l~iL~~l~~~~~~~s~~ela~~~gl--------------~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~ 66 (241)
T 2xrn_A 6 ARAASIMRALGSHPHGLSLAAIAQLVGL--------------PRSTVQRIINALEEEFLVEALGPAGGFRLGPAL 66 (241)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHTTS--------------CHHHHHHHHHHHHTTTSEEECGGGCEEEECSHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHH
Confidence 48889998887654 7999999998874 44789999999999999999874 456777664
No 124
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=92.56 E-value=0.088 Score=40.71 Aligned_cols=74 Identities=19% Similarity=0.113 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC---CCceeCcch
Q 032244 52 DWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK---GGRRITSSG 128 (144)
Q Consensus 52 DW~y~RaASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~---gGR~lT~~G 128 (144)
.+-+.++-+....++-.+++.+..++...|- |.+-+=..+++||+.||++..++ .+=.||++|
T Consensus 9 ~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~i--------------sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G 74 (230)
T 3cta_A 9 YYRAIKKIKEAAEASNRAYLTSSKLADMLGI--------------SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKG 74 (230)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHH
Confidence 3444444443444444455778999997774 33567778899999999998732 256799999
Q ss_pred HhhHHHHHHHH
Q 032244 129 QRDLDQVAGRI 139 (144)
Q Consensus 129 ~~~lD~iA~~i 139 (144)
+..++.+...+
T Consensus 75 ~~l~~~~~~~~ 85 (230)
T 3cta_A 75 LDVLYTEFADL 85 (230)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998776543
No 125
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=92.56 E-value=0.25 Score=36.11 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHHHHHHHh--CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC-CCCceeCcchH
Q 032244 58 AASMARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS-KGGRRITSSGQ 129 (144)
Q Consensus 58 aASilRklYl~--g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~-~gGR~lT~~G~ 129 (144)
|-.+|..|..+ +++.+..++..+|- |-..+|++|++|+++|||+... .||-.|+....
T Consensus 16 Al~~L~~La~~~~~~~~~~~iA~~~~i--------------~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p~ 76 (149)
T 1ylf_A 16 AVHILSILKNNPSSLCTSDYMAESVNT--------------NPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLH 76 (149)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEC---CCEEESSCGG
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEccCCCceEeCCChh
Confidence 44456555553 47899999998884 4569999999999999998655 67888887653
No 126
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=92.54 E-value=0.16 Score=37.44 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=37.0
Q ss_pred CCCCchhhHHHHHHHHHhCCcceecC--C--CC-----ceeCcchHhhHHHHHHHH
Q 032244 93 FSKSSGSVARHILHQLQDTNIIELDS--K--GG-----RRITSSGQRDLDQVAGRI 139 (144)
Q Consensus 93 ~~~asg~iiR~~LqqLE~~glv~k~~--~--gG-----R~lT~~G~~~lD~iA~~i 139 (144)
+..-|-+.|-.+|+.||+.|||+... . +| -.||++|++.+.....+.
T Consensus 63 ~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~~ 118 (138)
T 2e1n_A 63 NYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLW 118 (138)
T ss_dssp TEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 34567789999999999999998652 1 34 379999999998876654
No 127
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=92.46 E-value=0.12 Score=40.43 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhC------CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcc
Q 032244 54 YYIRAASMARKIYLRG------GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSS 127 (144)
Q Consensus 54 ~y~RaASilRklYl~g------~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~ 127 (144)
.+-.++..||..-+.| .+....|+..|| -|..-+|.+|+.||..|||+..+..|-.+++-
T Consensus 29 ~~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lg--------------VSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~ 94 (239)
T 2hs5_A 29 RTTRVAGILRDAIIDGTFRPGARLSEPDICAALD--------------VSRNTVREAFQILIEDRLVAHELNRGVFVRVP 94 (239)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEeCCCeeEEeCC
Confidence 3445556666555554 356778999999 46789999999999999999999779899888
Q ss_pred hHhhHHHH
Q 032244 128 GQRDLDQV 135 (144)
Q Consensus 128 G~~~lD~i 135 (144)
...++..+
T Consensus 95 ~~~~~~el 102 (239)
T 2hs5_A 95 TAEDITEL 102 (239)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 77766554
No 128
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=92.42 E-value=0.13 Score=40.35 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=43.9
Q ss_pred CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHHH
Q 032244 70 GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQV 135 (144)
Q Consensus 70 ~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~i 135 (144)
.+....|+..|| -|..-+|.+|+.||..|+|+..+.+|-.+++-...++..+
T Consensus 49 ~L~e~~La~~lg--------------VSr~~VReAL~~L~~~Glv~~~~~~G~~V~~~~~~~~~~~ 100 (237)
T 3c7j_A 49 ALRQQELATLFG--------------VSRMPVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDA 100 (237)
T ss_dssp BCCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEETTTEEEECCCHHHHHHHH
T ss_pred eeCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEeCCCceEEecCCHHHHHHH
Confidence 467889999998 4678999999999999999999888989988877665543
No 129
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=92.25 E-value=0.59 Score=31.99 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCC
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG 120 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~g 120 (144)
||+.|+-.+|+.++.|....+-. +| -+.+-+-.+|+.||+.|||+..+++
T Consensus 15 vL~~L~~~~~~t~~el~~~l~~~--~~--------~~~~Tvt~~l~rLe~kGlv~R~~~~ 64 (126)
T 1sd4_A 15 VMNIIWDKKSVSANEIVVEIQKY--KE--------VSDKTIRTLITRLYKKEIIKRYKSE 64 (126)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHTT--SC--------CCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHhcCCCCHHHHHHHHhhc--CC--------CChhhHHHHHHHHHHCCceEEEeCC
Confidence 68888889999999999999842 11 2356788999999999999987763
No 130
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=91.92 E-value=0.32 Score=35.52 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=42.5
Q ss_pred HHHHHHHHh---CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCceeCcchH
Q 032244 60 SMARKIYLR---GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGRRITSSGQ 129 (144)
Q Consensus 60 SilRklYl~---g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR~lT~~G~ 129 (144)
.+|..|..+ +++.+..++..+|- |-..+|++|++|.++|||+... .||-.|+..-.
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i--------------~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 75 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNL--------------SDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAE 75 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGG
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcc
Confidence 345445543 36899999997774 5569999999999999998654 57888886554
No 131
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=91.60 E-value=0.44 Score=33.75 Aligned_cols=53 Identities=23% Similarity=0.393 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCc----eeCcch
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGR----RITSSG 128 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR----~lT~~G 128 (144)
.||+.|. +++..++.|....|- |.+-+.+.|+.||+.|+|..... || .||+++
T Consensus 50 ~IL~~L~-~~~~s~~ela~~lgi--------------s~stvs~~L~~Le~~Glv~~~~~-gr~~~y~l~~~~ 106 (122)
T 1r1t_A 50 RLLSLLA-RSELCVGDLAQAIGV--------------SESAVSHQLRSLRNLRLVSYRKQ-GRHVYYQLQDHH 106 (122)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEESSHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEEChHH
Confidence 3666664 689999999998873 45689999999999999997765 43 355554
No 132
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=91.57 E-value=0.34 Score=36.34 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=41.3
Q ss_pred HHHHHHHHh--CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCceeCcch
Q 032244 60 SMARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGRRITSSG 128 (144)
Q Consensus 60 SilRklYl~--g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR~lT~~G 128 (144)
.+|-.|..+ +++.+..++..+|- |...+|++|++|.++|||+... .||-+|+..-
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~i--------------s~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHL--------------NPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLAL 74 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTS--------------CGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCG
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEeecCCCCCeEecCCh
Confidence 344444433 47899999998885 3468999999999999998665 5688887654
No 133
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=91.38 E-value=0.18 Score=37.84 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=36.0
Q ss_pred CCCchhhHHHHHHHHHhCCcceecC--C--CC-----ceeCcchHhhHHHHHHHH
Q 032244 94 SKSSGSVARHILHQLQDTNIIELDS--K--GG-----RRITSSGQRDLDQVAGRI 139 (144)
Q Consensus 94 ~~asg~iiR~~LqqLE~~glv~k~~--~--gG-----R~lT~~G~~~lD~iA~~i 139 (144)
..-+-+.|-.+|+.||+.|||+... . +| -.||++|++.|.....+.
T Consensus 74 ~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~~ 128 (148)
T 2zfw_A 74 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLW 128 (148)
T ss_dssp EECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 3456678999999999999998653 1 24 479999999988876654
No 134
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.38 E-value=0.37 Score=32.56 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
.|+..|--+|.+.|..|...|+ -|-.-||.-|..||+.|+|++.+
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~--------------VS~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLN--------------TPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTT--------------CCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCcHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEec
Confidence 3677777789999999999887 46789999999999999999883
No 135
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=91.37 E-value=0.33 Score=38.89 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHh-CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcc
Q 032244 56 IRAASMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSS 127 (144)
Q Consensus 56 ~RaASilRklYl~-g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~ 127 (144)
-|+..||..|--. +++++..|...-|-.| +-+..+|+.|++.|||++++++...|++.
T Consensus 30 ~Ral~IL~~l~~~~~~ltl~eia~~lgl~k--------------sTv~RlL~tL~~~G~v~~~~~~~Y~LG~~ 88 (275)
T 3mq0_A 30 RRAVRILDLVAGSPRDLTAAELTRFLDLPK--------------SSAHGLLAVMTELDLLARSADGTLRIGPH 88 (275)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCC----------------CHHHHHHHHHHTTSEEECTTSEEEECTH
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEECCCCcEEehHH
Confidence 4788899888875 4799999999888544 46889999999999999998655777765
No 136
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=91.21 E-value=0.41 Score=32.85 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=44.3
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCC-CceeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-GRRITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~g-GR~lT~~G~~~lD~ 134 (144)
||..|+- ++..+..+....|- |.+-+.+.|+.||+.|+|....++ +..+|..|...+..
T Consensus 37 il~~L~~-~~~s~~ela~~l~i--------------s~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~ 96 (119)
T 2lkp_A 37 ILTQLRN-GPLPVTDLAEAIGM--------------EQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQL 96 (119)
T ss_dssp HHHHHHH-CCCCHHHHHHHHSS--------------CHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHH-CCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHH
Confidence 6666664 78999999998874 446899999999999999876542 34577777655443
No 137
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=90.91 E-value=0.75 Score=36.84 Aligned_cols=60 Identities=28% Similarity=0.369 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhCC------C-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCc
Q 032244 54 YYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITS 126 (144)
Q Consensus 54 ~y~RaASilRklYl~g~------~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~ 126 (144)
.|...+..|+.--..|- + ....|+..|| -|..-+|.+|++|++.|+|+..+..|-.+++
T Consensus 30 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~--------------vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 95 (272)
T 3eet_A 30 AYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYG--------------VSDTVALEARKVLMAEGLVEGRSGSGTYVRE 95 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEECCC--EEECC
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEEEecCceEEEec
Confidence 56777777777666653 3 6788999999 4668999999999999999998866766665
Q ss_pred c
Q 032244 127 S 127 (144)
Q Consensus 127 ~ 127 (144)
.
T Consensus 96 ~ 96 (272)
T 3eet_A 96 R 96 (272)
T ss_dssp C
T ss_pred C
Confidence 3
No 138
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=90.78 E-value=0.14 Score=36.55 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC---CCC-----ceeCcchHhhH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGG-----RRITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~---~gG-----R~lT~~G~~~l 132 (144)
||--|. .+|.---.|.+.....-. + + -+-+.|-.+|+.||+.|||+... .+| -.||++|++.|
T Consensus 19 IL~lL~-~~p~~gyel~~~l~~~~~-~-----~--i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l 89 (117)
T 3elk_A 19 ILKELV-KRPMHGYELQKSMFETTG-Q-----A--LPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFL 89 (117)
T ss_dssp HHHHHH-HSCEEHHHHHHHHHHHHS-C-----C--CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHHHhC-C-----C--CCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence 454443 566655555555542211 0 1 13378999999999999998553 223 35999999999
Q ss_pred HHHH
Q 032244 133 DQVA 136 (144)
Q Consensus 133 D~iA 136 (144)
.+..
T Consensus 90 ~~~~ 93 (117)
T 3elk_A 90 CDHS 93 (117)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8753
No 139
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.74 E-value=0.46 Score=37.91 Aligned_cols=65 Identities=8% Similarity=0.049 Sum_probs=47.6
Q ss_pred HHHHHHHh--CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec--CCCCce----eCcchHhhH
Q 032244 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD--SKGGRR----ITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl~--g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~--~~gGR~----lT~~G~~~l 132 (144)
||..||-. +++.+..|....+-. ++.+ =.+|+.||+.|||++. +.+.|. ||++|+..+
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~~-------------~~t~-t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCYK-------------QSDL-VQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSSC-------------GGGT-HHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCC-------------HhhH-HHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 67778874 478899998865532 3333 4689999999999865 444553 899999988
Q ss_pred HHHHHHH
Q 032244 133 DQVAGRI 139 (144)
Q Consensus 133 D~iA~~i 139 (144)
+.+...+
T Consensus 105 ~~~~~~~ 111 (250)
T 1p4x_A 105 AERVTLF 111 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 140
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=90.17 E-value=0.69 Score=34.74 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=37.8
Q ss_pred CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC--CCCceeCcch
Q 032244 69 GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGGRRITSSG 128 (144)
Q Consensus 69 g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~--~gGR~lT~~G 128 (144)
+++.+..++..+|- |-..+|++|++|.++|||+... .||-.|+..-
T Consensus 43 ~~~s~~eIA~~~~i--------------~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 43 GPISLRSIAQDKNL--------------SEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp CCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred CCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 47899999998874 4579999999999999998655 5688887654
No 141
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=90.15 E-value=0.3 Score=37.20 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=43.5
Q ss_pred HHHHHHHh--CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC------CCCc-----eeCcc
Q 032244 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS------KGGR-----RITSS 127 (144)
Q Consensus 61 ilRklYl~--g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~------~gGR-----~lT~~ 127 (144)
||..|.-+ +...+..|.... -.=|-+-|+.-|+.|+++|+|++.. ..|| .||++
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l-------------~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~ 100 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRN-------------PDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGE 100 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHC-------------TTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHH
T ss_pred HHHHHHcCCCCCCCHHHHHHhc-------------CCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHH
Confidence 55555444 235677775432 1246789999999999999999652 1244 89999
Q ss_pred hHhhHHH
Q 032244 128 GQRDLDQ 134 (144)
Q Consensus 128 G~~~lD~ 134 (144)
|+..|+.
T Consensus 101 Gr~~l~~ 107 (151)
T 3u1d_A 101 GIALLRA 107 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 142
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=90.14 E-value=0.37 Score=34.79 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=35.2
Q ss_pred CCCchhhHHHHHHHHHhCCcceecC--CCC-----ceeCcchHhhHHHHHHHH
Q 032244 94 SKSSGSVARHILHQLQDTNIIELDS--KGG-----RRITSSGQRDLDQVAGRI 139 (144)
Q Consensus 94 ~~asg~iiR~~LqqLE~~glv~k~~--~gG-----R~lT~~G~~~lD~iA~~i 139 (144)
..-+-+.|=.+|+.||+.|||+... .+| -.||++|+..|.....+.
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~~ 100 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQW 100 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 3456678889999999999998652 222 349999999999876654
No 143
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=90.04 E-value=0.18 Score=38.94 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=36.8
Q ss_pred hhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCccee--cCC--CCceeCcchHh
Q 032244 73 VGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL--DSK--GGRRITSSGQR 130 (144)
Q Consensus 73 v~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k--~~~--gGR~lT~~G~~ 130 (144)
-..|+..|| -|..-+|.+|+.||..|||+. .+. .|-.+++-...
T Consensus 31 E~~La~~lg--------------VSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~~~ 78 (239)
T 2di3_A 31 ERALSETLG--------------VSRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQ 78 (239)
T ss_dssp HHHHHHHHT--------------CCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCCCCS
T ss_pred HHHHHHHHC--------------CCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCCcch
Confidence 458999998 467899999999999999998 887 78888776554
No 144
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=90.04 E-value=0.63 Score=36.69 Aligned_cols=59 Identities=3% Similarity=-0.002 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcch
Q 032244 56 IRAASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSG 128 (144)
Q Consensus 56 ~RaASilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G 128 (144)
-|+..||+.|.- .+++++..|....|- +.+-+..+|+.||+.|||++++++...|+++.
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl--------------~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~ 82 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKL--------------PKTTVVRLVATMCARSVLTSRADGSYSLGPEM 82 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECHHH
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEECCCCeEEecHHH
Confidence 477788876653 468999999998884 34688899999999999999886556777654
No 145
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=89.81 E-value=0.81 Score=34.83 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhCC------C-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcc
Q 032244 55 YIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSS 127 (144)
Q Consensus 55 y~RaASilRklYl~g~------~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~ 127 (144)
|-.++..||..-+.|. + .-..|+..|| -|..-+|.+|+.||..|||+..+..|-.+++.
T Consensus 9 ~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~g--------------VSR~tVReAL~~L~~eGlv~~~~g~G~~V~~~ 74 (239)
T 1hw1_A 9 AGFAEEYIIESIWNNRFPPGTILPAERELSELIG--------------VTRTTLREVLQRLARDGWLTIQHGKPTKVNNF 74 (239)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEETTEEEEECCH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCcEEEecCCCcEeeCc
Confidence 4455555665555542 4 5678999998 36789999999999999999988768778753
No 146
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=89.80 E-value=0.89 Score=35.54 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhCC------C-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCc
Q 032244 54 YYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITS 126 (144)
Q Consensus 54 ~y~RaASilRklYl~g~------~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~ 126 (144)
.|...+..||.--..|. + ....|+..|| -|..-+|.+|+.|++.|+|+..+..|-.+++
T Consensus 10 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~--------------vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 75 (236)
T 3edp_A 10 LFEVIASKIKDSINRDEYKTGMLMPNETALQEIYS--------------SSRTTIRRAVDLLVEEGLVVRKNGVGLYVQP 75 (236)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEECCceEEEcc
Confidence 35666777776666542 3 6778999888 4668999999999999999998866877766
Q ss_pred c
Q 032244 127 S 127 (144)
Q Consensus 127 ~ 127 (144)
.
T Consensus 76 ~ 76 (236)
T 3edp_A 76 K 76 (236)
T ss_dssp C
T ss_pred C
Confidence 4
No 147
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=89.78 E-value=0.22 Score=39.06 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=47.8
Q ss_pred hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC---CCC-----ceeCcchHhhHHHHHHH
Q 032244 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGG-----RRITSSGQRDLDQVAGR 138 (144)
Q Consensus 68 ~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~---~gG-----R~lT~~G~~~lD~iA~~ 138 (144)
.+|.---.|.+.+...- .++...|-+-|-.+|+.||+.|||+... .+| -.||++|+..|.+...+
T Consensus 47 ~~p~~GYeL~~~l~~~~------~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~ 119 (204)
T 3l9f_A 47 KKERSGYEINDILQNQL------SYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQS 119 (204)
T ss_dssp SCCEEHHHHHHHHHHTS------TTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHh------CCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhc
Confidence 56766667777776432 2355677788999999999999998543 233 36999999999876654
No 148
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=89.73 E-value=1 Score=36.33 Aligned_cols=72 Identities=10% Similarity=0.041 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHh---CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHH
Q 032244 57 RAASMARKIYLR---GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLD 133 (144)
Q Consensus 57 RaASilRklYl~---g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD 133 (144)
+|-|++=-|++- +.+.++.|-...+ ---=|...+|.+|--|-+.||++.... |..||+.|++.++
T Consensus 4 ~arSlIlsll~g~~g~~i~~~~Li~l~~-----------~~Gi~e~avRtAlsRL~~~G~L~~~~~-GY~LT~~~~~~~~ 71 (247)
T 3kfw_X 4 TARSVVLSVLLGAHPAWATASELIQLTA-----------DFGIKETTLRVALTRMVGAGDLVRSAD-GYRLSDRLLARQR 71 (247)
T ss_dssp CHHHHHHHHHTTTTTSCBCHHHHHHHHT-----------TTTCCHHHHHHHHHHHHHTTSEEEETT-EEEECHHHHHHHH
T ss_pred CCceeeEeeecCCCCCcccHHHHHHHHH-----------HcCCChHHHHHHHHHHHHcCCeeccCC-ceeeCHHHHHHHH
Confidence 566777666542 4688888887776 222355789999999999999998776 7999999999888
Q ss_pred HHHHHHh
Q 032244 134 QVAGRIA 140 (144)
Q Consensus 134 ~iA~~i~ 140 (144)
+....|.
T Consensus 72 ~~~~rI~ 78 (247)
T 3kfw_X 72 RQDEAMR 78 (247)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 7776664
No 149
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=89.65 E-value=1 Score=31.47 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC------CCCceeCc------c
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS------KGGRRITS------S 127 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~------~gGR~lT~------~ 127 (144)
.||+.|.-++++....|...+|- |.+-++..|+.||+.|+|+... +-|..+|. .
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~ 73 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGI--------------SETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTK 73 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEEC
Confidence 47777777889999999999873 5678999999999999997432 22666655 4
Q ss_pred hHhhHHHHHHHHhh
Q 032244 128 GQRDLDQVAGRIAV 141 (144)
Q Consensus 128 G~~~lD~iA~~i~~ 141 (144)
+ ..++.++..+.+
T Consensus 74 ~-~~~~~~~~~l~~ 86 (141)
T 1i1g_A 74 P-EKLFEVAEKLKE 86 (141)
T ss_dssp G-GGHHHHHHHHHH
T ss_pred c-hhHHHHHHHHhc
Confidence 4 467888777643
No 150
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=89.58 E-value=1.5 Score=32.04 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=56.7
Q ss_pred HHHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCC--------CCchhhHHHHHHHHHhCCcceecCCC----C-ceeC
Q 032244 60 SMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFS--------KSSGSVARHILHQLQDTNIIELDSKG----G-RRIT 125 (144)
Q Consensus 60 SilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~--------~asg~iiR~~LqqLE~~glv~k~~~g----G-R~lT 125 (144)
.+|..||- .+..|++.+-.+.=|+++.-++-.|.. .=+-.-+|.++.||...|+++.+... + =.||
T Consensus 20 kiLs~V~r~~~rfG~~~iidvLrGs~~~ki~~~~~~l~tfGigk~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt 99 (134)
T 3aaf_A 20 KLLSAVDILGEKFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALT 99 (134)
T ss_dssp HHHHHHHHTTTCSCTHHHHHHHTTCCCTTSCGGGGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEEC
T ss_pred HHHHHHHHHcCcccccchhhhhcCCcHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHcCCceeecCcCccCceEEEC
Confidence 35666664 678999999999999887665442111 12334799999999999999876532 2 7899
Q ss_pred cchHhhHHHHH
Q 032244 126 SSGQRDLDQVA 136 (144)
Q Consensus 126 ~~G~~~lD~iA 136 (144)
++|+..|..--
T Consensus 100 ~~g~~vL~~~~ 110 (134)
T 3aaf_A 100 KKGRNWLHKAN 110 (134)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhCCc
Confidence 99999987643
No 151
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=89.41 E-value=0.52 Score=32.71 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
.|+.-|--+|.+.|..|...|| -|-.-||.-|..||+.|+|.+..
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~--------------VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQ--------------TPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTT--------------CCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEe
Confidence 3677777789999999999888 46689999999999999999873
No 152
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=89.01 E-value=1.3 Score=31.33 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=43.6
Q ss_pred HHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCc------eeCcchH
Q 032244 61 MARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGR------RITSSGQ 129 (144)
Q Consensus 61 ilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR------~lT~~G~ 129 (144)
||..|+- .+++.+..|....+.. ++ =+.+-+-.+|+.||+.|||+..++ || .||++|.
T Consensus 14 vL~~L~~~~~~~t~~el~~~l~~~--~~--------~~~~Tvt~~l~rLe~kGlv~r~~~-~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 14 VMDHLWSRTEPQTVRQVHEALSAR--RD--------LAYTTVMAVLQRLAKKNLVLQIRD-DRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHTCSSCEEHHHHHHHHTTT--CC--------CCHHHHHHHHHHHHHTTSEEEEC----CCEEEESSCHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHhcc--CC--------CCHHHHHHHHHHHHHCCCEEEEec-CCeEEEEeCCCHHHH
Confidence 6888887 5999999999999843 11 245678899999999999998876 44 2677774
No 153
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=88.91 E-value=1.5 Score=34.26 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhCC------C-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCc
Q 032244 54 YYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITS 126 (144)
Q Consensus 54 ~y~RaASilRklYl~g~------~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~ 126 (144)
.|...+..|+.--..|. + ....|+..||- |..-+|.+|++|++.|+|+..+..|-.+++
T Consensus 11 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 76 (243)
T 2wv0_A 11 IYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGI--------------SRMTVRQALSNLVNEGLLYRLKGRGTFVSK 76 (243)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEeCCCeEEEeC
Confidence 46677776666555542 3 67899999983 567999999999999999988876877765
Q ss_pred c
Q 032244 127 S 127 (144)
Q Consensus 127 ~ 127 (144)
.
T Consensus 77 ~ 77 (243)
T 2wv0_A 77 P 77 (243)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=88.54 E-value=0.99 Score=34.57 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec--CCCCc-------------ee
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD--SKGGR-------------RI 124 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~--~~gGR-------------~l 124 (144)
.||+.|. ++++.+..|....|- |.+-++..|+.||+.|+|+.. ...|+ .|
T Consensus 24 ~IL~~L~-~~~~s~~eLA~~lgl--------------S~stv~~~l~~Le~~GlI~~~~~~~~~~~~~~~~g~~~~~~~v 88 (192)
T 1uly_A 24 KILKLLR-NKEMTISQLSEILGK--------------TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVFYI 88 (192)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEeccccccchhhhcCcceEEEEE
Confidence 4788887 899999999998873 456899999999999999876 22243 36
Q ss_pred CcchH-hhHHHHHHHHh
Q 032244 125 TSSGQ-RDLDQVAGRIA 140 (144)
Q Consensus 125 T~~G~-~~lD~iA~~i~ 140 (144)
|.+|. ..++.++..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~ 105 (192)
T 1uly_A 89 NLYLGDEELRYIARSRL 105 (192)
T ss_dssp CSCSSCHHHHHHHHHHH
T ss_pred ecCCchhHHHHHHHHHH
Confidence 77773 45666666543
No 155
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=88.48 E-value=0.32 Score=38.51 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC-CCceeCcc
Q 032244 56 IRAASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GGRRITSS 127 (144)
Q Consensus 56 ~RaASilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~-gGR~lT~~ 127 (144)
-|+..||+.|-- .+++++..|...-|- +.+-+..+|+.|++.|||++++. +...|+++
T Consensus 6 ~Ral~IL~~l~~~~~~lsl~eia~~lgl--------------~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~ 65 (260)
T 3r4k_A 6 SKALTLLTYFNHGRLEIGLSDLTRLSGM--------------NKATVYRLMSELQEAGFVEQVEGARSYRLGPQ 65 (260)
T ss_dssp HHHHHHHTTCBTTBSEEEHHHHHHHHCS--------------CHHHHHHHHHHHHHTTSEEECSSSSEEEECTT
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHH
Confidence 378889988875 478999999998884 34789999999999999999986 45566664
No 156
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=88.25 E-value=1.1 Score=28.78 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=37.5
Q ss_pred HHHHHHHHh-CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC
Q 032244 60 SMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (144)
Q Consensus 60 SilRklYl~-g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~ 119 (144)
.||..|--. +++++..|....|- |.+.+.++|+.||+.|+|+..++
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lgl--------------sr~tv~~~l~~L~~~G~I~~~~~ 60 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQV--------------PKKTLNQVLYRLKKEDRVSSPSP 60 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCS--------------CHHHHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEecCCC
Confidence 467666555 58999999999984 35789999999999999987555
No 157
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=87.07 E-value=0.78 Score=36.04 Aligned_cols=58 Identities=19% Similarity=0.126 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcch
Q 032244 56 IRAASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSG 128 (144)
Q Consensus 56 ~RaASilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G 128 (144)
-|+..||+.|.- .+++++..|.+..|- +.+-+..+|+.|++.|||+++. +...|+++.
T Consensus 14 ~r~l~iL~~l~~~~~~~~~~eia~~~gl--------------~~stv~r~l~~L~~~G~v~~~~-~~Y~Lg~~~ 72 (257)
T 2g7u_A 14 ERGFAVLLAFDAQRPNPTLAELATEAGL--------------SRPAVRRILLTLQKLGYVAGSG-GRWSLTPRV 72 (257)
T ss_dssp HHHHHHHHTCSSSCSSCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECGGG
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEeCC-CEEEEcHHH
Confidence 377778877754 368999999998884 3468889999999999999874 466788765
No 158
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=86.87 E-value=0.68 Score=29.91 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCc
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGR 122 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR 122 (144)
||.-|+-.+++.+..|....+-. . .-+.+-+..+|+.||+.|||+.... ||
T Consensus 14 vL~~L~~~~~~t~~ei~~~l~~~--~--------~~s~~Tv~~~l~rL~~kGlv~r~~~-gr 64 (82)
T 1p6r_A 14 VMKVIWKHSSINTNEVIKELSKT--S--------TWSPKTIQTMLLRLIKKGALNHHKE-GR 64 (82)
T ss_dssp HHHHHHTSSSEEHHHHHHHHHHH--S--------CCCHHHHHHHHHHHHHTTSEEEEEE-TT
T ss_pred HHHHHHcCCCCCHHHHHHHHhhc--C--------CccHHHHHHHHHHHHHCCCeEEEec-CC
Confidence 67777778999999999998732 1 1255789999999999999998775 44
No 159
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=86.87 E-value=0.75 Score=32.05 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCc
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGR 122 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR 122 (144)
||+-|+-.+++.+..|....+.. ..-+.+-+..+|+.||+.|||++.+. ||
T Consensus 40 VL~~L~~~~~~t~~eL~~~l~~~----------~~~s~sTVt~~L~rLe~KGlV~R~~~-gR 90 (99)
T 2k4b_A 40 VMRVIWSLGEARVDEIYAQIPQE----------LEWSLATVKTLLGRLVKKEMLSTEKE-GR 90 (99)
T ss_dssp HHHHHHHHSCEEHHHHHHTCCGG----------GCCCHHHHHHHHHHHHHTTSCEEEEE-TT
T ss_pred HHHHHHhCCCCCHHHHHHHHhcc----------cCCCHhhHHHHHHHHHHCCCEEEEeC-CC
Confidence 67778889999999999987632 11345778999999999999998775 55
No 160
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.19 E-value=0.82 Score=36.89 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=41.3
Q ss_pred HHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHH-HHHhCCcceecCCCCceeCcchHhhH
Q 032244 65 IYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILH-QLQDTNIIELDSKGGRRITSSGQRDL 132 (144)
Q Consensus 65 lYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~Lq-qLE~~glv~k~~~gGR~lT~~G~~~l 132 (144)
.|-.+|+|+..++..+|-.. .-++.+.. .|..+|+|+..++ ||++|++|-+.|
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~--------------~t~~~~~~~~l~~~g~i~~~~~-gr~~~~~~~~~~ 324 (334)
T 1in4_A 271 IYRGGPVGLNALAASLGVEA--------------DTLSEVYEPYLLQAGFLARTPR-GRIVTEKAYKHL 324 (334)
T ss_dssp HSTTCCBCHHHHHHHHTSCH--------------HHHHHHTHHHHHHTTSEEEETT-EEEECHHHHHHT
T ss_pred HhCCCcchHHHHHHHhCCCc--------------chHHHHHHHHHHHcCCeecccc-cHHhhHHHHHHh
Confidence 34357899999999888432 23555555 8999999999998 999999998776
No 161
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=86.07 E-value=1.4 Score=35.62 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcce-ecC
Q 032244 55 YIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIE-LDS 118 (144)
Q Consensus 55 y~RaASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~-k~~ 118 (144)
-.|-+..+-.+|-.+++++..|.+.+|- |..-||+-|+.||+.|+|+ +..
T Consensus 6 ~~~~~~~ia~l~~~~~~~~~ela~~l~v--------------S~~tIrRdL~~l~~~G~v~iri~ 56 (315)
T 2w48_A 6 DIRLIVKIAQLYYEQDMTQAQIARELGI--------------YRTTISRLLKRGREQGIVTIAIN 56 (315)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEEec
Confidence 4577777888899999999999999984 6789999999999999998 554
No 162
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=85.64 E-value=1.9 Score=30.55 Aligned_cols=68 Identities=6% Similarity=0.040 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec-----C-CCCce------eCcc
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD-----S-KGGRR------ITSS 127 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~-----~-~gGR~------lT~~ 127 (144)
.||+.|--++++.+..|....|- |.+-++..|+.||+.|+|+.. + +-|+. ++..
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~ 72 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRI--------------PKATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAK 72 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCceEEEEEEEec
Confidence 47777777889999999998883 557899999999999999862 1 22544 3545
Q ss_pred h-HhhHHHHHHHHhh
Q 032244 128 G-QRDLDQVAGRIAV 141 (144)
Q Consensus 128 G-~~~lD~iA~~i~~ 141 (144)
+ ...+++++..+.+
T Consensus 73 ~~~~~~~~~~~~l~~ 87 (150)
T 2pn6_A 73 YGKNYHVELGNKLAQ 87 (150)
T ss_dssp CCTTHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHhc
Confidence 4 5678888877754
No 163
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=85.52 E-value=0.21 Score=38.66 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHHHHHhCCcceecC-CCC------ceeCcchHhhHHHHHHHHh
Q 032244 104 ILHQLQDTNIIELDS-KGG------RRITSSGQRDLDQVAGRIA 140 (144)
Q Consensus 104 ~LqqLE~~glv~k~~-~gG------R~lT~~G~~~lD~iA~~i~ 140 (144)
+|.+||+.|||+... .+| -.||++|+..+.+.-.+.+
T Consensus 54 ~l~~Le~~GlI~~~~~~~~rpektvY~ITe~Gr~~l~~~l~~~~ 97 (180)
T 2rkh_A 54 SIELLRYEGLVEAVDDGQGMEDDAMLAISAAGRRELHSLLTARL 97 (180)
T ss_dssp CTHHHHHTTSEECCC--------CEEEECHHHHHHHHHHHSCCC
T ss_pred HHHHHHHCCCeeeeecCCCCCccceeeeCHHHHHHHHHHHHHHh
Confidence 788999999997666 444 3799999999987655443
No 164
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=85.45 E-value=0.71 Score=33.45 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=39.9
Q ss_pred HHHHHHHHHh-CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC-CCCceeCcchH
Q 032244 59 ASMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS-KGGRRITSSGQ 129 (144)
Q Consensus 59 ASilRklYl~-g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~-~gGR~lT~~G~ 129 (144)
-.+|..|..+ +. .+..++..++- |-..++++|++|.++|||+... .||-.|+..-.
T Consensus 12 l~~L~~La~~~~~-s~~~IA~~~~i--------------~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p~ 69 (145)
T 1xd7_A 12 IHILSLISMDEKT-SSEIIADSVNT--------------NPVVVRRMISLLKKADILTSRAGVPGASLKKDPA 69 (145)
T ss_dssp HHHHHHHHTCSCC-CHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEECCSSSSSCEESSCGG
T ss_pred HHHHHHHHhCCCC-CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCceEeecCCCCceecCCHH
Confidence 3445444443 23 67778887764 5579999999999999998654 67888876543
No 165
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=85.45 E-value=1.7 Score=33.76 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhC------CC-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCc
Q 032244 55 YIRAASMARKIYLRG------GL-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITS 126 (144)
Q Consensus 55 y~RaASilRklYl~g------~~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~ 126 (144)
|...+..|+.--..| .+ ....|+..||- |..-+|.+|++|+..|+|+..+..|-.+++
T Consensus 7 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~g~i~~~~g~G~~V~~ 71 (239)
T 3bwg_A 7 YQQIATEIETYIEEHQLQQGDKLPVLETLMAQFEV--------------SKSTITKSLELLEQKGAIFQVRGSGIFVRK 71 (239)
T ss_dssp -CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEeCCceEEEec
Confidence 334555555444443 23 67789998883 668999999999999999988866765554
No 166
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=84.21 E-value=3.9 Score=28.60 Aligned_cols=45 Identities=7% Similarity=0.185 Sum_probs=37.4
Q ss_pred HHHHHHHHhCC--CchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 60 SMARKIYLRGG--LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 60 SilRklYl~g~--~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
.|+..|+-.++ +.+..|....| -|.+-+...|+.||+.|+|++..
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~--------------~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLK--------------LDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHT--------------SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEeeC
Confidence 47777777665 99999999887 26788999999999999998753
No 167
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=83.38 E-value=1.5 Score=36.07 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHHH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQ 134 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~ 134 (144)
++|.| ++|..+..|...+|-. -..++..|++|.++|+++... |-++|+.+...|.+
T Consensus 48 ll~~L--~~~~t~~eLa~~~g~~--------------~~~v~~~L~~l~~~gll~~~~--~~~lt~~~~~~l~~ 103 (373)
T 2qm3_A 48 VLSAV--LASDDIWRIVDLSEEP--------------LPLVVAILESLNELGYVTFED--GVKLTEKGEELVAE 103 (373)
T ss_dssp HHHHH--HHCSCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEECSS--SSEECHHHHHHHHH
T ss_pred HHHHh--cCCCCHHHHHHHhCCC--------------hHHHHHHHHHHhhCCcEEECC--CEEECHHHHHHHHh
Confidence 68888 7899999999988743 358999999999999998754 58999998877765
No 168
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=83.23 E-value=5.2 Score=28.45 Aligned_cols=68 Identities=10% Similarity=0.167 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCccee-----cC-CCCce------eCcc
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL-----DS-KGGRR------ITSS 127 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k-----~~-~gGR~------lT~~ 127 (144)
.||+.|.-++.+.+..|....|- |.+-++..|+.||+.|+|.. ++ +-|+. ++-.
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~ 77 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGV--------------SPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILK 77 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEES
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEEC
Confidence 57888888899999999998883 56789999999999999985 22 23654 3444
Q ss_pred hHhhHHHHHHHHhh
Q 032244 128 GQRDLDQVAGRIAV 141 (144)
Q Consensus 128 G~~~lD~iA~~i~~ 141 (144)
+...+++++..+.+
T Consensus 78 ~~~~~~~~~~~l~~ 91 (152)
T 2cg4_A 78 SAKDYPSALAKLES 91 (152)
T ss_dssp SGGGHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 44567888887754
No 169
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=82.87 E-value=8.4 Score=28.44 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec-----C-CCCc-------eeCc
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD-----S-KGGR-------RITS 126 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~-----~-~gGR-------~lT~ 126 (144)
.||+.|.-++.+.+..|.+..|- |.+-++..|+.||+.|+|+.. + +-|+ .+++
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lgl--------------S~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~ 86 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKK--------------PESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGK 86 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECC
Confidence 47888888899999999998883 557899999999999999742 2 2254 3455
Q ss_pred c-----hHhhHHHHHHHHhh
Q 032244 127 S-----GQRDLDQVAGRIAV 141 (144)
Q Consensus 127 ~-----G~~~lD~iA~~i~~ 141 (144)
. ....+|+++..+.+
T Consensus 87 ~~~~~f~~~~~~~~~~~l~~ 106 (171)
T 2ia0_A 87 PVIEDFLERYISYISSTLSA 106 (171)
T ss_dssp C--CHHHHHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHHHHHC
Confidence 5 55578888887653
No 170
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=82.29 E-value=0.96 Score=35.72 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcc
Q 032244 56 IRAASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSS 127 (144)
Q Consensus 56 ~RaASilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~ 127 (144)
-|+..||..|.- .+++++..|....|- +.+-+..+|+.|++.|||+++. +...|++.
T Consensus 21 ~r~l~iL~~l~~~~~~~~~~eia~~~gl--------------~~stv~r~l~tL~~~G~v~~~~-~~Y~Lg~~ 78 (265)
T 2ia2_A 21 ARGLAVIRCFDHRNQRRTLSDVARATDL--------------TRATARRFLLTLVELGYVATDG-SAFWLTPR 78 (265)
T ss_dssp HHHHHHHHTCCSSCSSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEESS-SEEEECGG
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEecC-CEEEEcHH
Confidence 477778876653 468999999998884 3468889999999999999874 45567664
No 171
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=82.19 E-value=3.2 Score=32.85 Aligned_cols=98 Identities=14% Similarity=0.267 Sum_probs=72.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCCCcchhcc-cCCC--------------ccCCCCCCchHHH-----HHHHHHHHHHHhCC
Q 032244 11 SPHEFVKAYAAHLKRSGKIELPTWNDIVK-TGTL--------------KELAPYDPDWYYI-----RAASMARKIYLRGG 70 (144)
Q Consensus 11 ~~~~fI~~~A~~LK~~gki~~P~w~d~vK-Tg~~--------------kE~~P~d~DW~y~-----RaASilRklYl~g~ 70 (144)
..+.+.+.+...|++.| +.||.+.|+.. +|.. ..+-+.++|-||. .++.+++.+.-+|+
T Consensus 138 ~~~~~~~~i~~~~~~~g-~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (258)
T 1lva_A 138 TQKKLLKDLEDKYRVSR-WQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHRQALGEAREVIKNLASTGP 216 (258)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEEEHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHCC-CCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEEcHHHHHHHHHHHHHHHhcCC
Confidence 56678888888887655 99998888775 4432 2366777887764 45666666555578
Q ss_pred CchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCcee
Q 032244 71 LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRI 124 (144)
Q Consensus 71 ~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~l 124 (144)
+.|..+|...|. |.+.+=-+|.-|.+.|+.....+ .|+|
T Consensus 217 it~a~~Rd~lg~--------------SRK~aIplLE~~Dr~g~TrR~gd-~Rvl 255 (258)
T 1lva_A 217 FGLAEARDALGS--------------SRKYVLPLLEYLDQVKFTRRVGD-KRVV 255 (258)
T ss_dssp BCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETT-EEEE
T ss_pred cCHHHHHHHhCC--------------cHHHHHHHHHHHhhcCceeeeCC-EEee
Confidence 999999999985 55666788999999999987764 5655
No 172
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=79.79 E-value=0.8 Score=33.37 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=27.2
Q ss_pred CchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC
Q 032244 71 LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (144)
Q Consensus 71 ~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~ 119 (144)
|.+..|...|. =.||+.|.+|++||+-|+|.....
T Consensus 60 ITpsvlseRlk--------------I~gSLAR~aLreL~~kGlIk~V~k 94 (108)
T 3u5c_Z 60 VSVSVLVDRLK--------------IGGSLARIALRHLEKEGIIKPISK 94 (108)
T ss_dssp BSHHHHHHTTC--------------CCTTHHHHHHHHHSSSSSCEEEEC
T ss_pred EeHHHhhhhhh--------------hhHHHHHHHHHHHHHCCCEEEEec
Confidence 66666666554 357899999999999999986654
No 173
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=79.73 E-value=3.4 Score=27.68 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCC---ceeCcchHhhHHH
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGG---RRITSSGQRDLDQ 134 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gG---R~lT~~G~~~lD~ 134 (144)
.|++.+.-+|+..++.+....|- |.+-+.+-|+.||++ +|+...+|. -.||+.+...+-+
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l~i--------------s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~ 93 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKL--------------PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIK 93 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTC--------------CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHH
Confidence 47777777899999999998874 446889999999999 998766532 3478777655443
No 174
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=78.67 E-value=4 Score=27.91 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=34.2
Q ss_pred HHHHHHHhC--CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcce
Q 032244 61 MARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIE 115 (144)
Q Consensus 61 ilRklYl~g--~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~ 115 (144)
|++.|+-.+ ++-...|++.-+= +-..+-+||+.||+.|||.
T Consensus 25 Vl~~I~~~g~~gi~qkeLa~~~~l--------------~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 25 VYQIIEDAGNKGIWSRDVRYKSNL--------------PLTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEE
Confidence 788888855 7888899996663 3467999999999999998
No 175
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=78.52 E-value=1.2 Score=35.07 Aligned_cols=59 Identities=8% Similarity=0.036 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHH---hC-CC-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcc
Q 032244 54 YYIRAASMARKIYL---RG-GL-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSS 127 (144)
Q Consensus 54 ~y~RaASilRklYl---~g-~~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~ 127 (144)
.|...+..|+.--. -| .+ ....|+..|| -|..-+|.+|++|++.|+|+. +..|-.+++.
T Consensus 15 ~y~~i~~~l~~~I~~~~~g~~lPse~~La~~~~--------------vSr~tvr~Al~~L~~~G~i~~-~g~Gt~V~~~ 78 (248)
T 3f8m_A 15 KHQVVRAELDRMLDGMRIGDPFPAEREIAEQFE--------------VARETVRQALRELLIDGRVER-RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHHHHHCCTTCBCCCHHHHHHHTT--------------CCHHHHHHHHHHHHHTTSEEE-ETTEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEe-CCCEEEEccC
Confidence 35555555544322 11 23 5678899888 467899999999999999999 7667666543
No 176
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.41 E-value=0.78 Score=33.43 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHhCCcceecCC
Q 032244 97 SGSVARHILHQLQDTNIIELDSK 119 (144)
Q Consensus 97 sg~iiR~~LqqLE~~glv~k~~~ 119 (144)
.||+.|.+|++||+-|+|.....
T Consensus 73 ~gSLAR~aLreL~~kGlIk~V~k 95 (108)
T 3iz6_V 73 NGSLARQAIKDLESRGAIRVVSV 95 (108)
T ss_dssp CCHHHHHHHHHHHHHHTSCEECC
T ss_pred cHHHHHHHHHHHHHCCCEEEEec
Confidence 57899999999999999986654
No 177
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=78.36 E-value=3.1 Score=32.08 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
.||..| ..+|..+..|....| -|.+-+-..|+.||+.|||+...
T Consensus 19 ~IL~~L-~~~~~s~~eLa~~l~--------------is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 19 RILFLL-TKRPYFVSELSRELG--------------VGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHH-HHSCEEHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-HhCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCceEEEe
Confidence 367666 479999999999885 56678999999999999998654
No 178
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=77.82 E-value=1.4 Score=37.59 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=41.8
Q ss_pred HhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhH---HHHHHHHHhCCcceecCCCCceeCcchHhhHHHHHHHH
Q 032244 67 LRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVA---RHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 139 (144)
Q Consensus 67 l~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~ii---R~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD~iA~~i 139 (144)
...++-...+...||-.- .... ...|++|++.|||+.+.+ .=+||++|+-.+|.|+..+
T Consensus 379 ~~~g~~~~~~~~~~g~~~-------------~~~~~~~~~~l~~~~~~gll~~~~~-~~~lT~~G~~~~~~i~~~f 440 (457)
T 1olt_A 379 CNFRLDYSPIEQQWDLLF-------------ADYFAEDLKLLAPLAKDGLVDVDEK-GIQVTAKGRLLIRNICMCF 440 (457)
T ss_dssp HHSEEEHHHHHHHTTCCH-------------HHHTHHHHHHHHHHHHTTSEEECSS-EEEECTTTGGGHHHHHHTT
T ss_pred HcCCCCHHHHHHHhCCCH-------------HHHHHHHHHHHHHHHHCCCEEEECC-EEEECHhhHHHHHHHHHHH
Confidence 345666677777676310 0111 234788999999987654 6789999999999999875
No 179
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=74.95 E-value=2 Score=34.21 Aligned_cols=42 Identities=5% Similarity=0.022 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCccee
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k 116 (144)
.||+.|. .+|..++.|....| -|.+-+.+.|+.||++|||+.
T Consensus 16 ~IL~~L~-~g~~s~~ELa~~lg--------------lS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLT-CMECYFSLLSSKVS--------------VSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHT-TTTTCSSSSCTTCC--------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEE
Confidence 3777776 68888888877554 466789999999999999987
No 180
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=74.41 E-value=3.5 Score=28.32 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
.||.-|. ..+..+..|.+..|= |.+-+|+.|+.||+.|+|.+..
T Consensus 21 ~IL~lL~-~~g~sa~eLAk~Lgi--------------Sk~aVr~~L~~Le~eG~I~~~~ 64 (82)
T 1oyi_A 21 EAIKTIG-IEGATAAQLTRQLNM--------------EKREVNKALYDLQRSAMVYSSD 64 (82)
T ss_dssp HHHHHHS-SSTEEHHHHHHHSSS--------------CHHHHHHHHHHHHHHTSSEECS
T ss_pred HHHHHHH-HcCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEeCC
Confidence 3554444 344999999998883 5578999999999999998764
No 181
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=73.00 E-value=7.6 Score=27.47 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCccee
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k 116 (144)
.||+.|.-++++.+..|....|- |.+-++..|+.||+.|+|+.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGL--------------SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEE
Confidence 47877777899999999998883 45689999999999999974
No 182
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=72.45 E-value=9.4 Score=25.57 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=36.0
Q ss_pred HHHHHHHHhC---CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 60 SMARKIYLRG---GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 60 SilRklYl~g---~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
.||.-|--.+ ++.+..|++..|- |.+-|+..|..||+.|+|+...
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgv--------------sr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGT--------------PKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEecC
Confidence 3665555677 7999999999983 3458999999999999998753
No 183
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=72.31 E-value=5.5 Score=25.43 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=40.0
Q ss_pred HHHHHHHHHh--CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC
Q 032244 59 ASMARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (144)
Q Consensus 59 ASilRklYl~--g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~ 119 (144)
..||.-|.-. +++.+..|....... ...-|-+-++..|+.||+.|+|.+...
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~---------~~~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDM---------GEEIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHT---------TCCCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHh---------CCCCCHhhHHHHHHHHHHCCCeEEEee
Confidence 4578777654 689999999988521 113467889999999999999998764
No 184
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=72.30 E-value=1.7 Score=33.18 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=28.0
Q ss_pred CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 70 GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 70 ~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
-|.+..|...|. =+||+.|.+|+.||+-|+|...-
T Consensus 63 lITpsvlseRlk--------------I~gSLARkaLreL~~kGlIk~V~ 97 (143)
T 2xzm_8 63 VLTVSTVVEKLK--------------VNGSLARQLMRTMADRKLVEKVA 97 (143)
T ss_dssp EECHHHHHHHHC--------------BCHHHHHHHHHHHHHTTSEEEEE
T ss_pred eecHHHHHHHhc--------------chHHHHHHHHHHHHHCCCEEEEe
Confidence 356777777775 35899999999999999997554
No 185
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=70.96 E-value=3.4 Score=30.37 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=25.2
Q ss_pred chhhHHHHHHHHHhCCcceecCC---CC-------ceeCcchHh
Q 032244 97 SGSVARHILHQLQDTNIIELDSK---GG-------RRITSSGQR 130 (144)
Q Consensus 97 sg~iiR~~LqqLE~~glv~k~~~---gG-------R~lT~~G~~ 130 (144)
|-+-+=-+|..||+.|+|+.... +. -.||++|+.
T Consensus 53 s~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~ 96 (122)
T 1bm9_A 53 NHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAA 96 (122)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHH
T ss_pred CcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhh
Confidence 33456678999999999975532 22 369999999
No 186
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=70.85 E-value=9.3 Score=26.96 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCccee
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k 116 (144)
.||+.|.-++++.+..|....|- |.+-++..|+.||+.|+|+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKL--------------SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEE
Confidence 47888877899999999998883 45789999999999999985
No 187
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=70.76 E-value=8.9 Score=27.52 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC------CCCce--------eC
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS------KGGRR--------IT 125 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~------~gGR~--------lT 125 (144)
.||+.|.-++++.+..|....|- |.+-++..|+.||+.|+|+... +-|.. ++
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~ 79 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVAL--------------SPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIR 79 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEc
Confidence 58888888899999999998883 5578999999999999998521 12442 24
Q ss_pred cchHhhHHHHHHHHhh
Q 032244 126 SSGQRDLDQVAGRIAV 141 (144)
Q Consensus 126 ~~G~~~lD~iA~~i~~ 141 (144)
+.. ..++.++..+.+
T Consensus 80 ~~~-~~~~~~~~~l~~ 94 (162)
T 2p5v_A 80 KAK-DAREDFAASVRK 94 (162)
T ss_dssp SST-THHHHHHHHHTT
T ss_pred CCc-hHHHHHHHHHhc
Confidence 544 668888887743
No 188
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=69.03 E-value=10 Score=28.32 Aligned_cols=42 Identities=21% Similarity=0.114 Sum_probs=30.7
Q ss_pred hC-CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCce
Q 032244 68 RG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRR 123 (144)
Q Consensus 68 ~g-~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~ 123 (144)
+| |..+..|+..+|-. +. -++..|++||+.|+|+.++...|.
T Consensus 21 ~g~~~s~~eia~~lgl~-------------~~-tv~~~l~~Le~~G~i~~~~~~~r~ 63 (196)
T 3k2z_A 21 NGYPPSVREIARRFRIT-------------PR-GALLHLIALEKKGYIERKNGKPRA 63 (196)
T ss_dssp HSSCCCHHHHHHHHTSC-------------HH-HHHHHHHHHHHTTSEECC---TTC
T ss_pred hCCCCCHHHHHHHcCCC-------------cH-HHHHHHHHHHHCCCEEecCCCcce
Confidence 45 78999999999843 22 378889999999999988643343
No 189
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=68.57 E-value=1.3 Score=36.52 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHcCCCCCCCcc-hhcccCCCccCCCCCCchHHH-HHHHHHHHHHHhCCCchhHHHHHhcCCC--CCC
Q 032244 12 PHEFVKAYAAHLKRSGKIELPTWN-DIVKTGTLKELAPYDPDWYYI-RAASMARKIYLRGGLGVGSFRRIYGGGK--RNG 87 (144)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~w~-d~vKTg~~kE~~P~d~DW~y~-RaASilRklYl~g~~Gv~~l~~~YGg~k--~rG 87 (144)
++.+|++|-+.|..+|-|-+|... ++.... .=+.||..++||-+ |...-.=..-..+..|+|.|...|-... .|.
T Consensus 51 ~~~vi~AL~~~vg~~GTLvmPt~t~~~~dp~-~w~~ppvp~~~~~~ir~~~p~fDp~~tps~~~G~l~E~fr~~pg~~RS 129 (268)
T 3ijw_A 51 AVAVVEALMEVITEEGTIIMPTQSSDLSDPK-HWSRPPVPEEWWQIIRDNVPAFEPHITPTRAMGKVVECFRTYPNVVRS 129 (268)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECCCGGGSCGG-GCCSSCCCHHHHHHHHHHSCCBCTTTCCCSSSCHHHHHHHTSTTCEEC
T ss_pred HHHHHHHHHHHhCCCCeEEEeccccccCChh-hhcCCCCcHHHHHHHHhhCCCCCcccCcccccChHHHHHHHCCCCeec
Confidence 789999999999999999999864 344443 33889999998863 3322221112223447888888774221 133
Q ss_pred CCCCCCCCCchhhHHHHHH
Q 032244 88 SRPPHFSKSSGSVARHILH 106 (144)
Q Consensus 88 ~~P~h~~~asg~iiR~~Lq 106 (144)
..|.+.--|-|.-...+++
T Consensus 130 ~HP~~Sfaa~G~~A~~i~~ 148 (268)
T 3ijw_A 130 NHPLGSFAAWGRHAEEITV 148 (268)
T ss_dssp SCTTTCEEEEETTHHHHHT
T ss_pred CCCCcceEEeCcCHHHHhc
Confidence 4677777777777777665
No 190
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=68.52 E-value=1.2 Score=34.95 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhC------CC-chhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcc
Q 032244 55 YIRAASMARKIYLRG------GL-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSS 127 (144)
Q Consensus 55 y~RaASilRklYl~g------~~-Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~ 127 (144)
|...+..|+.--..| .+ ....|+..||- |..-+|.+|++|++.|+|+..+..|-.+++.
T Consensus 18 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 83 (247)
T 2ra5_A 18 YFQLSQQLEAAIEHGALTPGSLLGNEIELAARLGL--------------SRPTVRQAIQSLVDKGLLVRRRGVGTQVVHS 83 (247)
T ss_dssp ----------------------------------------------------------------CEEEEEC---------
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEcCceeEEecc
Confidence 445555554443333 23 56677777773 5568999999999999999888667666654
No 191
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=68.24 E-value=5.7 Score=29.65 Aligned_cols=38 Identities=16% Similarity=0.360 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHHH
Q 032244 99 SVARHILHQLQD---TNIIELDSKGGRRITSSGQRDLDQVAG 137 (144)
Q Consensus 99 ~iiR~~LqqLE~---~glv~k~~~gGR~lT~~G~~~lD~iA~ 137 (144)
+-+=+.+++||+ ..|++.+.+ |=.||+.|+.+++.+-.
T Consensus 32 ~avS~~i~~LE~~lg~~Lf~R~~~-~~~lT~~G~~l~~~a~~ 72 (306)
T 3hhg_A 32 SAVSRIVKRLEEKLGVNLLNRTTR-QLSLTEEGAQYFRRAQR 72 (306)
T ss_dssp HHHHHHHHHHHHHHTSCCEETTSS-SCEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEeecCC-CeeECHhHHHHHHHHHH
Confidence 355667889987 477887765 89999999998876543
No 192
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=66.51 E-value=5.8 Score=29.07 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHhC---CcceecCC----CCceeCcchHhhHHHHH
Q 032244 98 GSVARHILHQLQDT---NIIELDSK----GGRRITSSGQRDLDQVA 136 (144)
Q Consensus 98 g~iiR~~LqqLE~~---glv~k~~~----gGR~lT~~G~~~lD~iA 136 (144)
-+-+=..+++||+. .|++.... +|-.||+.|+.+++..-
T Consensus 52 qsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~a~ 97 (135)
T 2ijl_A 52 YRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERYR 97 (135)
T ss_dssp HHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHHHH
Confidence 34566778999985 78888863 37889999999987654
No 193
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=66.34 E-value=9.2 Score=27.14 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC------CCCcee------Ccc
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS------KGGRRI------TSS 127 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~------~gGR~l------T~~ 127 (144)
.||+.|.-++++.+..|....|- |.+-++..|+.||+.|+|.... +-|..+ +-.
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~ 76 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGL--------------AESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVK 76 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCS--------------CHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEEC
Confidence 47888888899999999999883 5578999999999999998531 225422 211
Q ss_pred hHhhHHHHHHHHhh
Q 032244 128 GQRDLDQVAGRIAV 141 (144)
Q Consensus 128 G~~~lD~iA~~i~~ 141 (144)
...++.++..+.+
T Consensus 77 -~~~~~~~~~~l~~ 89 (151)
T 2cyy_A 77 -AGKYSEVASNLAK 89 (151)
T ss_dssp -TTCHHHHHHHHHT
T ss_pred -cccHHHHHHHHhc
Confidence 3456777777643
No 194
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=65.90 E-value=7.1 Score=28.92 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHH
Q 032244 99 SVARHILHQLQD---TNIIELDSKGGRRITSSGQRDLDQVA 136 (144)
Q Consensus 99 ~iiR~~LqqLE~---~glv~k~~~gGR~lT~~G~~~lD~iA 136 (144)
+-+=+.+++||+ ..|++.+.+ |=.||+.|+.+++.+-
T Consensus 30 ~avS~~i~~LE~~lg~~Lf~R~~~-~~~lT~~G~~l~~~a~ 69 (294)
T 1ixc_A 30 PPITRQMQALEADLGVVLLERSHR-GIELTAAGHAFLEDAR 69 (294)
T ss_dssp HHHHHHHHHHHHHHTSCCBC------CCBCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCEEEEeCCC-CeeECHhHHHHHHHHH
Confidence 345667889998 378887765 8899999999987653
No 195
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=65.18 E-value=10 Score=26.74 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCccee
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k 116 (144)
.||+.|.-++.+....|....|- |.+-++..|+.||+.|+|..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNT--------------TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTS--------------CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEE
Confidence 57888888899999999998873 55689999999999999984
No 196
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=64.91 E-value=3.1 Score=32.68 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=26.2
Q ss_pred hHHHHHH-HHHhCCcceecCCCCceeCcchHhhHH
Q 032244 100 VARHILH-QLQDTNIIELDSKGGRRITSSGQRDLD 133 (144)
Q Consensus 100 iiR~~Lq-qLE~~glv~k~~~gGR~lT~~G~~~lD 133 (144)
-+...++ -|.+.|+|...+. ||++|++|.+.|.
T Consensus 295 tl~~~l~~~l~~~gli~~~~~-g~~~t~~~~~~~~ 328 (338)
T 3pfi_A 295 TIEDVIEPYLLANGYIERTAK-GRIASAKSYSALK 328 (338)
T ss_dssp HHHHTTHHHHHHTTSEEEETT-EEEECHHHHHHHH
T ss_pred HHHHHHhHHHHHcCceecCCC-cccccHHHHHHhc
Confidence 3343344 7888999998886 9999999999885
No 197
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=64.44 E-value=6.5 Score=28.81 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=28.2
Q ss_pred hHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHH
Q 032244 100 VARHILHQLQD---TNIIELDSKGGRRITSSGQRDLDQVA 136 (144)
Q Consensus 100 iiR~~LqqLE~---~glv~k~~~gGR~lT~~G~~~lD~iA 136 (144)
-+=+.+++||+ ..|.+.+.+ |=.||+.|+.+++.+-
T Consensus 31 avS~~i~~LE~~lg~~Lf~R~~~-~~~lT~~G~~l~~~a~ 69 (291)
T 3szp_A 31 TITRRIQALEDSLNLRLLNRHAR-KLTLTEAGERFYKDCS 69 (291)
T ss_dssp HHHHHHHHHHHHHTCCCEEEETT-EEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCceEeecCC-CcccCHhHHHHHHHHH
Confidence 44567788988 468888876 8999999999987643
No 198
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=63.75 E-value=9.7 Score=30.13 Aligned_cols=51 Identities=8% Similarity=0.107 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeC
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRIT 125 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT 125 (144)
+++-.++.+|+..+..|+...| .+.+.++..|..|++.|+|++..+ |++.-
T Consensus 168 ~~l~~~l~~~~~t~~~la~~~~--------------l~~~~V~~~l~~L~~~~~v~~~~~-~~~~~ 218 (232)
T 2qlz_A 168 AILHYLLLNGRATVEELSDRLN--------------LKEREVREKISEMARFVPVKIIND-NTVVL 218 (232)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHT--------------CCHHHHHHHHHHHTTTSCEEEETT-TEEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHhC--------------cCHHHHHHHHHHHHhcCCeEEecC-CeEEe
Confidence 3555567789999999999877 567899999999999999996665 66543
No 199
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=60.94 E-value=16 Score=28.33 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCC
Q 032244 52 DWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG 120 (144)
Q Consensus 52 DW~y~RaASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~g 120 (144)
|=..-|-..||+-|- +|++.+.++.+.-|- |=+-++++|.+||+.|+|+..+.|
T Consensus 7 d~v~erk~~ILE~Lk-~G~~~t~~Iak~LGl--------------Shg~aq~~Ly~LeREG~V~~Vk~G 60 (165)
T 2vxz_A 7 REVLVRLRDILALLA-DGCKTTSLIQQRLGL--------------SHGRAKALIYVLEKEGRVTRVAFG 60 (165)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSCEEEEET
T ss_pred HHHHHHHHHHHHHHH-hCCccHHHHHHHhCC--------------cHHHHHHHHHHHHhcCceEEEEEc
Confidence 445668888888777 999999999998883 457899999999999999988874
No 200
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=60.91 E-value=13 Score=27.90 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHH
Q 032244 99 SVARHILHQLQD---TNIIELDSKGGRRITSSGQRDLDQVA 136 (144)
Q Consensus 99 ~iiR~~LqqLE~---~glv~k~~~gGR~lT~~G~~~lD~iA 136 (144)
+-+=+.+++||+ ..|.+.+.+ |=.||+.|+.+++.+-
T Consensus 31 ~avS~~i~~LE~~lg~~Lf~R~~r-~~~lT~~G~~l~~~a~ 70 (305)
T 3fxq_A 31 PALSAAIQQLEDELKAPLLVRTKR-GVSLTSFGQAFMKHAR 70 (305)
T ss_dssp HHHHHHHHHHHHHHTSCSEEECSS-SEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEEecCC-CccCCHhHHHHHHHHH
Confidence 455677889997 578888775 8899999999887643
No 201
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=59.91 E-value=15 Score=27.57 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHHH
Q 032244 99 SVARHILHQLQD---TNIIELDSKGGRRITSSGQRDLDQVAG 137 (144)
Q Consensus 99 ~iiR~~LqqLE~---~glv~k~~~gGR~lT~~G~~~lD~iA~ 137 (144)
+-+=+.+++||+ ..|.+.+ + |-.||+.|+.+++.+..
T Consensus 35 ~avS~~i~~LE~~lg~~Lf~R~-~-~~~lT~~G~~l~~~a~~ 74 (303)
T 3isp_A 35 SAVSQRIKSLEQQVGQVLVVRE-K-PCRATTAGIPLLRLAAQ 74 (303)
T ss_dssp HHHHHHHHHHHHHHTSCCEECS-S-SCEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEEcC-C-CCeeCchHHHHHHHHHH
Confidence 445567889987 4778876 5 89999999999987653
No 202
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=59.88 E-value=11 Score=28.22 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHHH
Q 032244 99 SVARHILHQLQD---TNIIELDSKGGRRITSSGQRDLDQVAG 137 (144)
Q Consensus 99 ~iiR~~LqqLE~---~glv~k~~~gGR~lT~~G~~~lD~iA~ 137 (144)
+-+=+.+++||+ ..|.+.+.+ |=.||+.|+.+++.+..
T Consensus 39 ~avS~~I~~LE~~lg~~Lf~R~~~-~~~lT~~G~~l~~~a~~ 79 (310)
T 2esn_A 39 SAFSHALGRLRQGLDDELFLRQGN-RMQPTQRAEHLAAAVAA 79 (310)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEETT-EEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCcceeecCC-CccccHHHHHHHHHHHH
Confidence 345567889998 478888775 88999999999877543
No 203
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=59.77 E-value=9.8 Score=31.69 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCce
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRR 123 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~ 123 (144)
.|+..++-++-+.+..+.... .-|..-+|+.|++|++.|++++... ||.
T Consensus 301 ~ll~~l~~~p~~t~~~~~~~~--------------gvS~~Ta~r~L~~L~e~GiL~~~~~-gR~ 349 (373)
T 2qc0_A 301 ELVQVIFEQPYCRIQNLVESG--------------LAKRQTASVYLKQLCDIGVLEEVQS-GKE 349 (373)
T ss_dssp HHHHHHHHCSEEEHHHHHHTS--------------SSCHHHHHHHHHHHHHTTSCEEC---CCS
T ss_pred HHHHHHHhCCcccHHHHHHHh--------------CCCHHHHHHHHHHHHHCCcEEEecC-CCc
Confidence 355555544444555555543 3466789999999999999998864 664
No 204
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=59.20 E-value=18 Score=29.31 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcce-ecCCCCceeCcc
Q 032244 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIE-LDSKGGRRITSS 127 (144)
Q Consensus 57 RaASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~-k~~~gGR~lT~~ 127 (144)
|-..|++.|--.+.+.+..|...+| -|..-||+-|+.||+.|++. ..+..|.+|.+.
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~--------------vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~~ 63 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLG--------------MSRAAINKHIQTLRDWGVDVFTVPGKGYSLPEP 63 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHT--------------SCHHHHHHHHHHHHHTTCCCEEETTTEEECSSC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHC--------------CCHHHHHHHHHHHHhCCCcEEEecCCCcEEeec
Confidence 5567888776567899999999998 35568999999999999985 334347777654
No 205
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=58.55 E-value=18 Score=26.61 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC------CCCcee------Ccc
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS------KGGRRI------TSS 127 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~------~gGR~l------T~~ 127 (144)
.||+.|.-++.+.+..|....|- |.+-++.-|+.||+.|+|+... +-|+.+ +-.
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lgl--------------S~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~ 96 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITGL--------------AESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVK 96 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEEC
Confidence 58888888899999999999883 5578899999999999997521 225432 111
Q ss_pred hHhhHHHHHHHHhh
Q 032244 128 GQRDLDQVAGRIAV 141 (144)
Q Consensus 128 G~~~lD~iA~~i~~ 141 (144)
...++.++..+.+
T Consensus 97 -~~~~~~v~~~l~~ 109 (171)
T 2e1c_A 97 -AGKYSEVASNLAK 109 (171)
T ss_dssp -TTCHHHHHHHHHT
T ss_pred -cchHHHHHHHHhc
Confidence 3456777777653
No 206
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=56.94 E-value=22 Score=26.30 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHh-CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCc-ceecCCCCceeCcch
Q 032244 56 IRAASMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNI-IELDSKGGRRITSSG 128 (144)
Q Consensus 56 ~RaASilRklYl~-g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~gl-v~k~~~gGR~lT~~G 128 (144)
-|.-.|+..|.-+ +++.+..|...+| -|..-||.=|+.||+.|+ |.... +|..|+...
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~--------------vS~~Ti~rdi~~L~~~G~~I~~~~-~Gy~l~~~~ 80 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELS--------------VSRQVIVQDIAYLRSLGYNIVATP-RGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHT--------------SCHHHHHHHHHHHHHHTCCCEEET-TEEECCTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEEEEC-CEEEECCcc
Confidence 3666788777654 5699999999997 456688999999999999 87654 577777643
No 207
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=56.89 E-value=11 Score=24.65 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=35.6
Q ss_pred HHHHHHHHhC---CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 60 SMARKIYLRG---GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 60 SilRklYl~g---~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
.||.-|--.+ ++.+..|++..|=. .+-|++.|..||+.|+|+...
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs--------------~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTP--------------KKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCC--------------HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEecC
Confidence 3665556677 89999999998832 357899999999999998754
No 208
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=56.13 E-value=33 Score=27.17 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCC--CceeCcchH
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG--GRRITSSGQ 129 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~g--GR~lT~~G~ 129 (144)
|+..| -.+|+.+..|....|- +-..++..|..|..+|+++....+ .-.+|+.+.
T Consensus 41 i~~~l-~~~~~t~~eLA~~~g~--------------~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~ 96 (374)
T 1qzz_A 41 LVDHL-LAGADTLAGLADRTDT--------------HPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGM 96 (374)
T ss_dssp HHHHH-HTTCCSHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGG
T ss_pred hHHHH-hCCCCCHHHHHHHhCc--------------CHHHHHHHHHHHhhCCCEEEeCCCCeEEEEChHHH
Confidence 34444 3689999999998874 236899999999999999886665 567777654
No 209
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=55.51 E-value=14 Score=28.24 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=23.7
Q ss_pred HHHHHHHh---CCcceecCC----CCceeCcchHhhHHHH
Q 032244 103 HILHQLQD---TNIIELDSK----GGRRITSSGQRDLDQV 135 (144)
Q Consensus 103 ~~LqqLE~---~glv~k~~~----gGR~lT~~G~~~lD~i 135 (144)
..+++||+ ..|++..+. +|..||+.|+.++...
T Consensus 53 ~~i~~le~~lg~~L~~R~~~~lsg~~~~lt~~g~~l~~~~ 92 (265)
T 1b9m_A 53 DAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLY 92 (265)
T ss_dssp HHHHHHHHHHTSCCEEECCCC-----EEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEecCCCCCCCceEECHHHHHHHHHH
Confidence 34667766 378888874 5899999999988764
No 210
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=53.17 E-value=21 Score=25.71 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC------CCCcee--------C
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS------KGGRRI--------T 125 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~------~gGR~l--------T 125 (144)
.||+.|--++++.+..|....| -|.+-+|.-++.||+.|+|.... +-|..+ .
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg--------------~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~ 72 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVG--------------LSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTA 72 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECC
T ss_pred HHHHHHHHCCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEc
Confidence 4777777789999999999887 46678999999999999998421 224422 2
Q ss_pred cchHhhHHHHHHHHhh
Q 032244 126 SSGQRDLDQVAGRIAV 141 (144)
Q Consensus 126 ~~G~~~lD~iA~~i~~ 141 (144)
+.....+++++..+.+
T Consensus 73 ~~~~~~~~~~~~~l~~ 88 (162)
T 3i4p_A 73 SHSIEWLKRFSEVVSE 88 (162)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHhc
Confidence 3334568888887754
No 211
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=52.87 E-value=9 Score=28.53 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=21.4
Q ss_pred hHHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHH
Q 032244 100 VARHILHQLQD---TNIIELDSKGGRRITSSGQRDLDQVA 136 (144)
Q Consensus 100 iiR~~LqqLE~---~glv~k~~~gGR~lT~~G~~~lD~iA 136 (144)
-+=+.+++||+ ..|++.+...|-.||+.|+.+++.+-
T Consensus 34 avS~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~ 73 (306)
T 3fzv_A 34 SISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRKAQ 73 (306)
T ss_dssp CHHHHHHHHHHHC-CCCC---------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCeeEeecCCCCceECHhHHHHHHHHH
Confidence 35567788987 35777752237899999999988754
No 212
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=51.90 E-value=29 Score=27.43 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHh
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQR 130 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~ 130 (144)
|+..| ..+|..+..|....|- +-..++..|..|..+|+++....|...+|+.+..
T Consensus 44 i~~~l-~~~~~t~~ela~~~~~--------------~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~~ 98 (360)
T 1tw3_A 44 LVDHI-LAGARTVKALAARTDT--------------RPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGEL 98 (360)
T ss_dssp HHHHH-HTTCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGG
T ss_pred HHHHH-hCCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCEEecCCCeEEeCHHHHH
Confidence 33444 3689999999998874 3468999999999999998766555678876543
No 213
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=51.83 E-value=32 Score=30.22 Aligned_cols=76 Identities=9% Similarity=-0.008 Sum_probs=53.8
Q ss_pred HHHHHHHHH----HhCCCchhHHHHHhcCCCCCCCCCC-C-CCCCchhhHHHHHHHHHhCCcceecCC---CC----cee
Q 032244 58 AASMARKIY----LRGGLGVGSFRRIYGGGKRNGSRPP-H-FSKSSGSVARHILHQLQDTNIIELDSK---GG----RRI 124 (144)
Q Consensus 58 aASilRklY----l~g~~Gv~~l~~~YGg~k~rG~~P~-h-~~~asg~iiR~~LqqLE~~glv~k~~~---gG----R~l 124 (144)
|-.+|.-|| ..+..|++.+...+-|+++...+-. | ...-+..-++.++.||-..|+++.+.. -| =.|
T Consensus 446 ~~~~l~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 525 (591)
T 2v1x_A 446 CRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKI 525 (591)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHTTCSCGGGCCTTCCCCSCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHhCCCchHHHhcCCCcCcCCHHHHHHHHHHHHHcCCcEEecccCCCceeEEeeE
Confidence 344555565 4678999999999988765443322 2 345567789999999999999987532 13 258
Q ss_pred CcchHhhHH
Q 032244 125 TSSGQRDLD 133 (144)
Q Consensus 125 T~~G~~~lD 133 (144)
|++|+..|.
T Consensus 526 ~~~~~~~~~ 534 (591)
T 2v1x_A 526 GPKANLLNN 534 (591)
T ss_dssp CGGGGGGGS
T ss_pred CHHHHHHhc
Confidence 999987763
No 214
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=51.63 E-value=5.6 Score=33.02 Aligned_cols=92 Identities=18% Similarity=0.350 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHHcCCCCCCCcc-hhcccCCCccCCCCCCchHHH-HHHHHHHHHHHhCCCchhHHHHHhcCCCCCC--
Q 032244 12 PHEFVKAYAAHLKRSGKIELPTWN-DIVKTGTLKELAPYDPDWYYI-RAASMARKIYLRGGLGVGSFRRIYGGGKRNG-- 87 (144)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~w~-d~vKTg~~kE~~P~d~DW~y~-RaASilRklYl~g~~Gv~~l~~~YGg~k~rG-- 87 (144)
++.+|++|-+.|-++|-|-+|.+. ++.++. .=+.||..++||=+ |...-.=..-..+.-|+|.|...|- +.-|
T Consensus 58 a~~vi~AL~~~vg~~GTLvmPt~t~~~~d~~-~~~~p~vp~~w~~~ir~~~p~fDp~~Tps~~mG~l~E~fR--~~pgv~ 134 (286)
T 3sma_A 58 AQAVVLALQDAVGKEGTLVMPTFSGDLSDPS-TWRRPPVPEDWWPVIREQMPPFDPDLTPTRGMGAVAECFR--RAAGAV 134 (286)
T ss_dssp HHHHHHHHHHHHCTTCEEEEECCCTTSSCGG-GCCSSCCCGGGHHHHHHHCCCCCTTTCCCSSSCHHHHHHT--TSTTCE
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCcccCChh-hhcCCCCcHHHHHHHHhhCCCCCcccCcccccChhHHHHH--hCCCce
Confidence 789999999999999999999854 233333 44678888999852 2221111111223457888888883 4444
Q ss_pred --CCCCCCCCCchhhHHHHHH
Q 032244 88 --SRPPHFSKSSGSVARHILH 106 (144)
Q Consensus 88 --~~P~h~~~asg~iiR~~Lq 106 (144)
..|.+.--|-|.-...+++
T Consensus 135 RS~HP~~SfaA~G~~A~~i~~ 155 (286)
T 3sma_A 135 RSGHPQNSFAAWGAHAEQVVA 155 (286)
T ss_dssp ECSCTTTCEEEEETTHHHHHT
T ss_pred ecCCCCCCEEEecCCHHHHhc
Confidence 4566666677777777766
No 215
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=49.77 E-value=20 Score=30.04 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCce
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRR 123 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~ 123 (144)
.++..|+-++-+.++.+.+..| .|..-+++.|++|+++|++++... ||.
T Consensus 301 ~ll~~l~~~p~~t~~~~~~~~~--------------~S~~TA~r~L~~L~e~GiL~~~~~-gR~ 349 (373)
T 3eqx_A 301 ELVQVIFEQPYCRIQNLVESGL--------------AKRQTASVYLKQLCDIGVLEEVQS-GKE 349 (373)
T ss_dssp HHHHHHHHCSEEEHHHHHHTSS--------------SCHHHHHHHHHHHHHTTSCEEC---CCS
T ss_pred HHHHHHHHCCCccHHHHHHHhC--------------cCHHHHHHHHHHHHHCCcEEEeCC-CCc
Confidence 3566666666667777776554 355678999999999999998764 554
No 216
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=48.91 E-value=25 Score=29.09 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 57 RaASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
....||+.|+-++++....|.+..|= |..-+-+++++|++.|+|+...
T Consensus 40 n~~~il~~l~~~~~~sr~ela~~~gl--------------s~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESEL--------------APASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecc
Confidence 34569999999999999999998884 4467899999999999997643
No 217
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=48.89 E-value=40 Score=25.45 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=38.8
Q ss_pred HHHHHH-HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec---CCCCc
Q 032244 55 YIRAAS-MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD---SKGGR 122 (144)
Q Consensus 55 y~RaAS-ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~---~~gGR 122 (144)
+-|||- +|.-|+.++|+.-..+..+.|-. | ..++++|.+.|||+.. +.+||
T Consensus 92 LS~aaLEtLaiIay~qPiTR~eI~~irGv~-------------~----~~~v~~L~e~glI~e~g~~~~~GR 146 (162)
T 1t6s_A 92 LSRSMLEVLAVVAWHQPVTKGEIQQIRGAS-------------P----DYSIDRLLARGLIEVRGRADSPGR 146 (162)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHTCC-------------C----CSHHHHHHHTTSEEEEEECSSTTC
T ss_pred cCHHHHHHHHHHHHcCCcCHHHHHHHHCCC-------------H----HHHHHHHHHCCCEEEccccCCCCC
Confidence 455554 89999999999999999998842 2 2466789999999742 33576
No 218
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=46.68 E-value=33 Score=28.04 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=42.2
Q ss_pred HHHHHHHHh-C-CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCc-ceecCCCCceeCcc
Q 032244 60 SMARKIYLR-G-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNI-IELDSKGGRRITSS 127 (144)
Q Consensus 60 SilRklYl~-g-~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~gl-v~k~~~gGR~lT~~ 127 (144)
.||+.|... + ++..+.|+..+|- |..-|++.+++|++.|+ |+..+..|-+|.+.
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgv--------------Sr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~ 63 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNI--------------SRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTCEEEEETTTEEEEEEC
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCC--------------CHHHHHHHHHHHHhcCCeEEEeCCCeEEEecC
Confidence 578777653 3 7999999999984 56789999999999999 55455558888753
No 219
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=46.01 E-value=29 Score=28.27 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec
Q 032244 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (144)
Q Consensus 59 ASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~ 117 (144)
..||+.|+-++++....|.+..|= |..-+-+++++|++.|+|+..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~l--------------s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQL--------------APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTC--------------CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEee
Confidence 569999999999999999997773 556889999999999999764
No 220
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=45.59 E-value=17 Score=29.61 Aligned_cols=43 Identities=9% Similarity=0.171 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~ 117 (144)
.||+.|+ ++++.-..|.+..|= |..-+-+++++|++.|+|+..
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gl--------------s~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGL--------------TKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEee
Confidence 4899999 999999999998884 446789999999999999753
No 221
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=45.27 E-value=4.5 Score=30.88 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CcceecCCCCceeCcchHhhHHHH
Q 032244 101 ARHILHQLQDT---NIIELDSKGGRRITSSGQRDLDQV 135 (144)
Q Consensus 101 iR~~LqqLE~~---glv~k~~~gGR~lT~~G~~~lD~i 135 (144)
+=+.+++||+. .|++.+.+ |=.||+.|+.+++.+
T Consensus 32 vS~~I~~LE~~lg~~Lf~R~~r-~~~lT~~G~~l~~~a 68 (312)
T 2h9b_A 32 LSRQIQNLEEELGIQLLERGSR-PVKTTPEGHFFYQYA 68 (312)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHhCCEeEeeCCC-CceECHHHHHHHHHH
Confidence 44567889884 67777765 889999999988764
No 222
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=45.16 E-value=5.1 Score=29.01 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCccee
Q 032244 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (144)
Q Consensus 60 SilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k 116 (144)
.|+..|--.+.+....|...+|- |.+-+|.+|+.||+.|+|+.
T Consensus 17 ~Il~~l~~~~~ls~~eLa~~lgv--------------Sr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 17 NILNELQKDGRISNVELSKRVGL--------------SPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHCSSCCTTGGGTSSSC--------------CTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEE
Confidence 46664444567888888887773 44578999999999999983
No 223
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=44.82 E-value=62 Score=25.26 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=41.6
Q ss_pred hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhH
Q 032244 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDL 132 (144)
Q Consensus 68 ~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~l 132 (144)
.||+.+..|....|- +-..++.+|..|..+|+++...++.-.+|+.++...
T Consensus 36 ~g~~t~~elA~~~~~--------------~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~ 86 (332)
T 3i53_A 36 AGHRTAAEIASAAGA--------------HADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLR 86 (332)
T ss_dssp TTCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGS
T ss_pred cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHh
Confidence 579999999998873 234799999999999999987765678888777653
No 224
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=44.47 E-value=4.7 Score=29.66 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHh---CCcceecCCCCceeCcchHhhHHHHH
Q 032244 101 ARHILHQLQD---TNIIELDSKGGRRITSSGQRDLDQVA 136 (144)
Q Consensus 101 iR~~LqqLE~---~glv~k~~~gGR~lT~~G~~~lD~iA 136 (144)
+=+.+++||+ ..|.+.+.+ |=.||+.|+.+++.+-
T Consensus 29 vS~~i~~LE~~lg~~Lf~R~~~-~~~lT~~G~~l~~~a~ 66 (300)
T 3mz1_A 29 VTNLIQGLEAHLRTKLLNRTTR-RVLVTPDGALYYERAA 66 (300)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHhCCeeEecCCC-ceeeCHhHHHHHHHHH
Confidence 3456778887 356676655 7899999999887653
No 225
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=43.69 E-value=30 Score=27.03 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=40.8
Q ss_pred hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhH
Q 032244 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDL 132 (144)
Q Consensus 68 ~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~l 132 (144)
.+|..+..|....|- +-..++.+|..|..+|+++....+.-.+|+.++..+
T Consensus 39 ~~~~t~~ela~~~~~--------------~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l~ 89 (334)
T 2ip2_A 39 SGIDSDETLAAAVGS--------------DAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLR 89 (334)
T ss_dssp TTCCSHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHTTS
T ss_pred CCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHhCCceEecCCCeEecCHHHHHHh
Confidence 489999999998874 336899999999999999887655677887665443
No 226
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=43.31 E-value=3.2 Score=29.12 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=20.1
Q ss_pred HHHHHHHHHHc-CCCCCCCcchhcc
Q 032244 16 VKAYAAHLKRS-GKIELPTWNDIVK 39 (144)
Q Consensus 16 I~~~A~~LK~~-gki~~P~w~d~vK 39 (144)
.+.|.++|+++ +....|+|++|||
T Consensus 38 l~~L~~WL~~nP~y~v~p~w~~~v~ 62 (87)
T 2v0f_A 38 MKDLPRWLEENPEFAVAPDWTDIVK 62 (87)
T ss_dssp GGGHHHHHHHCTTEEECHHHHHHHH
T ss_pred hHHHHHHHHHCCCceechhHHHHHH
Confidence 35789999999 5557899999997
No 227
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=43.15 E-value=12 Score=28.86 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhCCcceecCCCCceeCcchHhhHH
Q 032244 100 VARHILHQLQDTNIIELDSKGGRRITSSGQRDLD 133 (144)
Q Consensus 100 iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD 133 (144)
+-|++-+-|.+.|+|+..+. ||.+|..|.+.+.
T Consensus 281 l~~~l~~~~i~~~li~~~~~-g~~~~~~~~~~~~ 313 (324)
T 1hqc_A 281 LEEVHEPYLIRQGLLKRTPR-GRVPTELAYRHLG 313 (324)
T ss_dssp HHHHTHHHHHHTTSEEEETT-EEEECHHHHHHTT
T ss_pred HHHHHhHHHHHhcchhcCCc-cceecHHHHHHHh
Confidence 33334444888999998876 9999999998763
No 228
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=41.97 E-value=11 Score=29.28 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=16.6
Q ss_pred HHHHHHHHcCC--CCCCCcchh
Q 032244 18 AYAAHLKRSGK--IELPTWNDI 37 (144)
Q Consensus 18 ~~A~~LK~~gk--i~~P~w~d~ 37 (144)
-+|-.||+.++ |.+|+|.++
T Consensus 47 WLAl~Lkk~~kc~I~~P~Wl~~ 68 (185)
T 2e9x_B 47 WLAINLKQRQKCRLLPPEWMDV 68 (185)
T ss_dssp HHHHHHHHTTSEEECCCTTCCH
T ss_pred HHHHHHHhCCceEEECCcccCH
Confidence 37899999977 899999654
No 229
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Probab=41.51 E-value=12 Score=30.84 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCcchhcccCCCccC
Q 032244 14 EFVKAYAAHLKRSGKIELPTWNDIVKTGTLKEL 46 (144)
Q Consensus 14 ~fI~~~A~~LK~~gki~~P~w~d~vKTg~~kE~ 46 (144)
+.|...++--.+.| +|||||+++..-
T Consensus 172 e~i~~A~~ia~eaG-------ADfVKTSTGf~~ 197 (281)
T 2a4a_A 172 DLIIKTTLAVLNGN-------ADFIKTSTGKVQ 197 (281)
T ss_dssp HHHHHHHHHHHTTT-------CSEEECCCSCSS
T ss_pred HHHHHHHHHHHHhC-------CCEEEeCCCCCC
Confidence 33444444444444 799999999874
No 230
>3iz5_o 60S ribosomal protein L39 (L39E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_o 2zkr_3
Probab=39.36 E-value=42 Score=21.21 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCCCCCcchhcccCCCccCCCCCCch
Q 032244 17 KAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDW 53 (144)
Q Consensus 17 ~~~A~~LK~~gki~~P~w~d~vKTg~~kE~~P~d~DW 53 (144)
..||..+|++ =.+|.|+-. |||.-=...|-...|
T Consensus 11 ~rLaK~~kqN--r~iP~Wv~~-KT~~kir~n~kRRhW 44 (51)
T 3iz5_o 11 QKLAKKQRQN--RPIPYWIRM-RTDNTIRYNAKRRHW 44 (51)
T ss_dssp HHHHHHHHHS--SCCCGGGGT-SCSSCCCCCCCCCCS
T ss_pred HHHHHHHhcc--CCCCceEEE-eCCCccccCCccccc
Confidence 4689999998 689999976 999887777776666
No 231
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=38.92 E-value=6.4 Score=30.33 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CcceecCCCCceeCcchHhhHHHH
Q 032244 101 ARHILHQLQDT---NIIELDSKGGRRITSSGQRDLDQV 135 (144)
Q Consensus 101 iR~~LqqLE~~---glv~k~~~gGR~lT~~G~~~lD~i 135 (144)
+=+.+++||+. .|++.+.+ |=.||+.|+.+++..
T Consensus 32 vS~~I~~LE~~lG~~Lf~R~~r-~v~lT~~G~~l~~~a 68 (313)
T 2h98_A 32 LSRQIQKLEEELGIQLFERGFR-PAKVTEAGMFFYQHA 68 (313)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHhCCeeEEcCCC-CeEECHhHHHHHHHH
Confidence 34567888874 67777765 889999999988764
No 232
>4a18_B RPL39, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_B 4a1b_B 4a1d_B
Probab=38.87 E-value=44 Score=21.19 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCCCCCCcchhcccCCCccCCCCCCch
Q 032244 17 KAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDW 53 (144)
Q Consensus 17 ~~~A~~LK~~gki~~P~w~d~vKTg~~kE~~P~d~DW 53 (144)
..||..+|++ =.+|.|+-. |||.-=...|-...|
T Consensus 11 ~rLaK~~kqN--r~iP~Wv~~-KT~~kir~n~KRRhW 44 (52)
T 4a18_B 11 KRFGRKIKQN--RPLPNWYRY-KSDTNIRYNSKRRNW 44 (52)
T ss_dssp HHHHHHHHTT--SCCCTTGGG-CSSCCCSSCTTCCCT
T ss_pred HHHHHHHhcc--CCCCceEEE-eCCCccccCCccccc
Confidence 4689999988 689999976 999887777777666
No 233
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=38.71 E-value=6.5 Score=30.08 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CcceecCCCCceeCcchHhhHHHH
Q 032244 101 ARHILHQLQDT---NIIELDSKGGRRITSSGQRDLDQV 135 (144)
Q Consensus 101 iR~~LqqLE~~---glv~k~~~gGR~lT~~G~~~lD~i 135 (144)
+=+.+++||+. .|++.+.+ |=.||+.|+.+++.+
T Consensus 45 vS~~I~~LE~~lg~~Lf~R~~r-~~~lT~~G~~l~~~a 81 (315)
T 1uth_A 45 VSNSLKRLRTALNDDLFLRTSK-GMEPTPYALHLAEPV 81 (315)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHhCCcceeecCC-CccCCHHHHHHHHHH
Confidence 34556788874 66776665 778999999888754
No 234
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=37.61 E-value=11 Score=30.86 Aligned_cols=89 Identities=16% Similarity=0.261 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHcCCCCCCCcchhc-ccCCCccCCCCCCchHHHHHHHHHHH---HHH--hCCC--chhHHHHHhcCC
Q 032244 12 PHEFVKAYAAHLKRSGKIELPTWNDIV-KTGTLKELAPYDPDWYYIRAASMARK---IYL--RGGL--GVGSFRRIYGGG 83 (144)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~w~d~v-KTg~~kE~~P~d~DW~y~RaASilRk---lYl--~g~~--Gv~~l~~~YGg~ 83 (144)
++.+|++|-+.+.++|-|-+|.+..-- ++. .=+.||+.++||= ++|. .|= ..|. |+|.|...|-..
T Consensus 49 ~~~vi~AL~~~vg~~GTLvmPtft~~~~dp~-~w~~~p~~~~~~~-----~ir~~~p~fDp~~Tps~~~mG~l~E~fR~~ 122 (273)
T 2nyg_A 49 AVAVIQALIDVVTEEGTIVMPSQSVELSDPK-EWGNPPVPEEWWD-----IIRESMPAYNSNYTPTTRGMGQIVELFRSY 122 (273)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCCTTSSCGG-GCCSSCCCGGGTT-----HHHHSCCCCCTTTCCCCGGGCHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCeEEEeccccccCChh-hhcCCCCcHHHHH-----HHHhhcCCCCcccCCcccccChHHHHHHhC
Confidence 789999999999999999999986532 222 2477899889983 4443 221 1356 999999888632
Q ss_pred --CCCCCCCCCCCCCchhhHHHHHH
Q 032244 84 --KRNGSRPPHFSKSSGSVARHILH 106 (144)
Q Consensus 84 --k~rG~~P~h~~~asg~iiR~~Lq 106 (144)
-.|...|.+.--|-|.-...+++
T Consensus 123 pgv~RS~HP~~SfaA~G~~A~~i~~ 147 (273)
T 2nyg_A 123 PEVKRSNHPNYSFVAWGKHKNKILN 147 (273)
T ss_dssp TTCEECSCSSSCEEEEETTHHHHHS
T ss_pred CCCcccCCCCcceEEeCcCHHHHhc
Confidence 12234566665566776666654
No 235
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=37.53 E-value=1.1e+02 Score=23.74 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=61.6
Q ss_pred ccCchHHHHHHHHHHHHcCCCCCCCcchhcccCCCc---cCCCCCCchHHHHHHHHHHHHHHhCCCchhHHHHHhcCCCC
Q 032244 9 DVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLK---ELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKR 85 (144)
Q Consensus 9 DV~~~~fI~~~A~~LK~~gki~~P~w~d~vKTg~~k---E~~P~d~DW~y~RaASilRklYl~g~~Gv~~l~~~YGg~k~ 85 (144)
-|+|++|.+++... + ++..| ..+.+=++++ +..|...+=...+...++- -.|++.+..|+..+|=
T Consensus 113 lVSp~Dl~~A~~~l-~---~Lg~~--~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~---~~g~vt~~~la~~l~w--- 180 (218)
T 3cuq_B 113 LLSPEDLVNACKML-E---ALKLP--LRLRVFDSGVMVIELQSHKEEEMVASALETVS---EKGSLTSEEFAKLVGM--- 180 (218)
T ss_dssp CCCHHHHHHHHHTT-T---TTTCS--EEEEECTTSBEEEEETTCCGGGGHHHHHHHHH---HTSCBCHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHH-H---HcCCC--EEEEEECCCcEEEEcCCCchHHHHHHHHHHHH---HCCCcCHHHHHHHhCC---
Confidence 48999999887543 3 35556 5566656555 3556554455555544443 4699999999999974
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 86 NGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 86 rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
|-.+++..|..+|+.|++=.+.
T Consensus 181 -----------s~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 181 -----------SVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp -----------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred -----------CHHHHHHHHHHHHHcCCEEEEC
Confidence 4568999999999999997664
No 236
>3u5e_l L46, YL40, 60S ribosomal protein L39; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_O 2ww9_O 3izc_o 3izs_o 2wwb_O 3o5h_e 3o58_e 3u5i_l 4b6a_l 3jyw_1
Probab=37.31 E-value=44 Score=21.09 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCCCCCcchhcccCCCccCCCCCCch
Q 032244 17 KAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDW 53 (144)
Q Consensus 17 ~~~A~~LK~~gki~~P~w~d~vKTg~~kE~~P~d~DW 53 (144)
..||..+|++ =.+|.|+-. |||.-=...|-...|
T Consensus 11 ~rLaK~~kqN--r~iP~Wv~~-KT~~kir~n~KRRhW 44 (51)
T 3u5e_l 11 QKMAKAKKQN--RPLPQWIRL-RTNNTIRYNAKRRNW 44 (51)
T ss_dssp HHHHHHHHTC--SCCCGGGGG-STTCCCCSCTTCCCT
T ss_pred HHHHHHHhcc--CCCCceEEE-eCCCccccCCccccc
Confidence 4689999988 689999976 999887777776666
No 237
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=35.53 E-value=43 Score=26.65 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHcCCCCCCCcchhcccCCCcc-CCCCCCchHHHHHHHHHHHH
Q 032244 12 PHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKE-LAPYDPDWYYIRAASMARKI 65 (144)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~w~d~vKTg~~kE-~~P~d~DW~y~RaASilRkl 65 (144)
.++.|...++--.+.| +|||||+++.. ...-. +....++|+.
T Consensus 144 t~eei~~a~~ia~~aG-------ADfVKTSTGf~~~~gAt-----~edv~lm~~~ 186 (231)
T 3ndo_A 144 GEPLLADVCRVARDAG-------ADFVKTSTGFHPSGGAS-----VQAVEIMART 186 (231)
T ss_dssp CHHHHHHHHHHHHHTT-------CSEEECCCSCCTTCSCC-----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-------cCEEEcCCCCCCCCCCC-----HHHHHHHHHH
Confidence 4556666677666666 89999999875 22222 2455556554
No 238
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=35.22 E-value=19 Score=26.87 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhCC
Q 032244 54 YYIRAASMARKIYLRGG 70 (144)
Q Consensus 54 ~y~RaASilRklYl~g~ 70 (144)
.+-|||-+||++|.+-.
T Consensus 44 ~~CrAatvLrq~Y~~H~ 60 (129)
T 2d48_A 44 TFCRAATVLRQFYSHHE 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57899999999999854
No 239
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=34.69 E-value=39 Score=26.55 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=41.7
Q ss_pred hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhHH
Q 032244 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLD 133 (144)
Q Consensus 68 ~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~lD 133 (144)
.+|+.+..|....|-. -..+|.+|..|..+|+++... ++..+|+.+...|+
T Consensus 54 ~~~~t~~elA~~~~~~--------------~~~l~rlLr~L~~~gll~~~~-~~y~~t~~s~~~l~ 104 (352)
T 3mcz_A 54 QTGRTPAEVAASFGMV--------------EGKAAILLHALAALGLLTKEG-DAFRNTALTERYLT 104 (352)
T ss_dssp TSCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHS
T ss_pred CCCCCHHHHHHHhCcC--------------hHHHHHHHHHHHHCCCeEecC-CeeecCHHHHhhcc
Confidence 4689999999988742 235999999999999999876 47899999987663
No 240
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=33.22 E-value=30 Score=24.22 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=26.7
Q ss_pred CchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 71 LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 71 ~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
..++.|+..-| -|.+-+..+|+.||+.|||+...
T Consensus 52 ps~~~LA~~l~--------------~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 52 PTPAELAERMT--------------VSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp CCHHHHHHTSS--------------SCHHHHHHHHHHHHHTTSSEECC
T ss_pred CCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEEe
Confidence 57777877443 45678899999999999998764
No 241
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=32.63 E-value=47 Score=21.97 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=24.3
Q ss_pred HHHHHHhCCc--ceecCCCCceeCc--ch------HhhHHHHHHHHhhcC
Q 032244 104 ILHQLQDTNI--IELDSKGGRRITS--SG------QRDLDQVAGRIAVVA 143 (144)
Q Consensus 104 ~LqqLE~~gl--v~k~~~gGR~lT~--~G------~~~lD~iA~~i~~~~ 143 (144)
+...|..+|+ |+.... |+.++= .+ ...++.+|.+++.|+
T Consensus 22 v~~al~~lG~~~v~~Vr~-gk~~~l~~~~~~~~~a~~~v~~~~~~LLaNp 70 (83)
T 2yx5_A 22 IQRALNFLGFNNVKEVQT-YKMIDIIMEGENEEKVKEEVEEMCKKLLANP 70 (83)
T ss_dssp HHHHHHHTTCTTCCCCCC-CEEEEEEEC-CCHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCCChhhEEE-EEEEEEEecCCCHHHHHHHHHHHHHHhccCC
Confidence 3345557787 555554 666654 33 477899999887653
No 242
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=32.33 E-value=26 Score=26.25 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcchhcccCCCccCCC
Q 032244 13 HEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAP 48 (144)
Q Consensus 13 ~~fI~~~A~~LK~~gki~~P~w~d~vKTg~~kE~~P 48 (144)
..++.++|++|+..|.+..-++..|.++=....+.=
T Consensus 105 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ls~ 140 (156)
T 2gbb_A 105 TKILEQIAEELKTCKPAEMGDKAHFINTIRQHNLTS 140 (156)
T ss_dssp HHHHHHHHHHHHHCCTTTSCCHHHHHHHCCCTTCCH
T ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHccccCCH
Confidence 578999999999999999999999988866655543
No 243
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=31.57 E-value=36 Score=26.33 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=38.6
Q ss_pred hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHh
Q 032244 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQR 130 (144)
Q Consensus 68 ~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~ 130 (144)
.+|..+..|....|-. -..++..|..|..+|+++..+ +.-.+|+.+..
T Consensus 37 ~~~~t~~ela~~~~~~--------------~~~l~r~L~~L~~~g~l~~~~-~~y~~t~~~~~ 84 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTS--------------ERGMRMLCDYLVIIGFMTKQA-EGYRLTSDSAM 84 (335)
T ss_dssp TSEECHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEET-TEEEECHHHHH
T ss_pred cCCCCHHHHHHHhCCC--------------chHHHHHHHHHHhcCCeEecC-CEEecCHHHHH
Confidence 3899999999988742 468999999999999998754 46778887743
No 244
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=30.66 E-value=15 Score=27.24 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=43.1
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC
Q 032244 49 YDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (144)
Q Consensus 49 ~d~DW~y~RaASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~ 119 (144)
++.||-++|. |||||+|--+..-.|=.. .-+..-.+...++.|..+..||++..--+..+
T Consensus 45 ~~~~W~~~Rn-------~IhGPlg~lr~~m~~l~~----~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n 104 (130)
T 3zsu_A 45 AKGDWQEARN-------IMRGPLGEMLMDMRALNR----NLLAKDQPTPTALTRALTDDFLKIDQGADLDS 104 (130)
T ss_dssp HTTCHHHHHH-------HHHTHHHHHHHHHHHHHH----TSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcchHHHHH-------HHhchHHHHHHHHHHHHH----hcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3679999986 899998876665555211 12445666778899999999999877765554
No 245
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.54 E-value=24 Score=24.54 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=34.1
Q ss_pred HHHHHHHhCC--CchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 61 MARKIYLRGG--LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 61 ilRklYl~g~--~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
|+..|.-.|. +-...|++.-+=. -.++-+||+.||..|||...+
T Consensus 42 Vy~~I~~aGn~GIw~kdL~~~tnL~--------------~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 42 VYQIIEDAGNKGIWSRDVRYKSNLP--------------LTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHhCCC--------------HHHHHHHHHHHHhCCCEEEec
Confidence 6666777565 5667999977743 368999999999999998654
No 246
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=30.15 E-value=11 Score=28.92 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CcceecCCCCc-eeCcchHhhHHHHH
Q 032244 101 ARHILHQLQDT---NIIELDSKGGR-RITSSGQRDLDQVA 136 (144)
Q Consensus 101 iR~~LqqLE~~---glv~k~~~gGR-~lT~~G~~~lD~iA 136 (144)
+=+.+++||+. .|.+.+.+ |= .||+.|+.+++.+.
T Consensus 33 vS~~I~~LE~~lg~~Lf~R~~r-~~~~lT~~G~~l~~~a~ 71 (324)
T 1al3_A 33 ISKQVRMLEDELGIQIFARSGK-HLTQVTPAGQEIIRIAR 71 (324)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHhCCEEEEECCC-CcceeCHhHHHHHHHHH
Confidence 44567889883 56666554 55 69999999887643
No 247
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=30.04 E-value=39 Score=27.23 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=40.0
Q ss_pred hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCC-ceeCcchHhh
Q 032244 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGG-RRITSSGQRD 131 (144)
Q Consensus 68 ~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gG-R~lT~~G~~~ 131 (144)
.||+.+..|...-|- +-..+|.+|..|..+|+++.++.+. -.+|+.++.+
T Consensus 69 ~g~~t~~eLA~~~g~--------------~~~~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~L 119 (369)
T 3gwz_A 69 EGPRTATALAEATGA--------------HEQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVL 119 (369)
T ss_dssp TSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSSEECSSTTEEECCHHHHTT
T ss_pred CCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHhCCCEEEeCCCceEecCHHHHHH
Confidence 478999999998873 2346999999999999999877645 5888877653
No 248
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=28.14 E-value=37 Score=25.24 Aligned_cols=44 Identities=5% Similarity=0.132 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecC
Q 032244 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (144)
Q Consensus 61 ilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~ 118 (144)
||+.| ..++..|+.|....|+ -|.+-+-+=|+.|+++|||+..+
T Consensus 28 il~~L-~~~~~~~~~l~~~l~~-------------~~~~~~s~Hl~~L~~aglv~~~~ 71 (182)
T 4g6q_A 28 ITQLL-IGRSLTTRELAELLPD-------------VATTTLYRQVGILVKAGVLMVTA 71 (182)
T ss_dssp HHHHT-TTSCEEHHHHHHHCTT-------------BCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHH-HhCCCCHHHHHHHhcC-------------CCHHHHHHHHHHHHHCCCeEEEE
Confidence 67666 4789999999998763 24456777789999999998554
No 249
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=27.70 E-value=40 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.6
Q ss_pred CceeccCchHHHHHHHHHHHHcC
Q 032244 5 KNVKDVSPHEFVKAYAAHLKRSG 27 (144)
Q Consensus 5 ~tv~DV~~~~fI~~~A~~LK~~g 27 (144)
+-+|||+-+.-.+.+|+.|++.|
T Consensus 6 lV~YDI~~~kr~~kv~k~L~~yG 28 (101)
T 2ivy_A 6 LIFYDITDDNLRNRVAEFLKKKG 28 (101)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCChHHHHHHHHHHHHhC
Confidence 35799998999999999999987
No 250
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=27.48 E-value=55 Score=25.30 Aligned_cols=27 Identities=26% Similarity=0.577 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCcceecCCC---CceeCcch
Q 032244 102 RHILHQLQDTNIIELDSKG---GRRITSSG 128 (144)
Q Consensus 102 R~~LqqLE~~glv~k~~~g---GR~lT~~G 128 (144)
..+|++|+++|+|..++.+ |++.+.-.
T Consensus 85 ~~~L~~L~~~g~l~~TPs~~~~g~~~~~yd 114 (185)
T 3v32_B 85 QHILRELEKKKILVFTPSRRVGGKRVVCYD 114 (185)
T ss_dssp THHHHHHHHTTCEEEECCCC-------CCH
T ss_pred HHHHHHHHHCCCEEECCCcccCCCcccCcc
Confidence 5899999999999998853 44444433
No 251
>3j21_f 50S ribosomal protein L39E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.39 E-value=42 Score=21.19 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCCCCCcchhcccCCCccCCCCCCch
Q 032244 17 KAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDW 53 (144)
Q Consensus 17 ~~~A~~LK~~gki~~P~w~d~vKTg~~kE~~P~d~DW 53 (144)
..||..+|++ =.+|.|+-. ||+.-=...|-...|
T Consensus 11 ~rLaK~~kqN--r~iP~Wv~~-KT~~kir~n~KRRhW 44 (51)
T 3j21_f 11 LRLAKALKQN--RRVPVWVIV-KTNRRVLTHPKRRYW 44 (51)
T ss_dssp HHHHHHHHHT--SCCCHHHHH-HHTSCCCSCTTCCCT
T ss_pred HHHHHHHhcc--CCCCceEEE-eCCCccccCCccccc
Confidence 4689999998 689999976 999877777766666
No 252
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=27.28 E-value=1.3e+02 Score=21.39 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=18.3
Q ss_pred CchhhHHHHHHHHHhCCcceec
Q 032244 96 SSGSVARHILHQLQDTNIIELD 117 (144)
Q Consensus 96 asg~iiR~~LqqLE~~glv~k~ 117 (144)
.|..-+=.+|++|++.|+|+..
T Consensus 179 ~sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 179 TTRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp SCHHHHHHHHHHHHHTTSEEES
T ss_pred CcHHHHHHHHHHHHHCCCEEEc
Confidence 3556777899999999999875
No 253
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=27.28 E-value=1.4e+02 Score=20.33 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCcee
Q 032244 56 IRAASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRI 124 (144)
Q Consensus 56 ~RaASilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~l 124 (144)
-.++.+++.+.- +|++.+..+|...| -|.+.+=-+|.-|.+.|+..+..+ .|+|
T Consensus 65 ~~~~~~l~~~~~~~~~it~ae~Rd~lg--------------~sRK~ai~lLE~~Dr~g~TrR~gd-~R~l 119 (121)
T 2pjp_A 65 VEFANMIRDLDQECGSTCAADFRDRLG--------------VGRKLAIQILEYFDRIGFTRRRGN-DHLL 119 (121)
T ss_dssp HHHHHHHHHHHHHHSSEEHHHHHHHHT--------------SCHHHHHHHHHHHHHHTSEEEETT-EEEE
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHHHC--------------CcHHHHHHHHHHHhhcCCeEeeCC-Eeec
Confidence 345666766544 68999999999996 355666679999999999887664 6665
No 254
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=27.27 E-value=30 Score=29.41 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHHHHh
Q 032244 52 DWYYIRAASMARKIYLR 68 (144)
Q Consensus 52 DW~y~RaASilRklYl~ 68 (144)
+=||-+||.|||.+.++
T Consensus 296 ~~yyd~~a~il~~~~~~ 312 (330)
T 3t7a_A 296 MKYYDDCAKILGNIVMR 312 (330)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 67999999999999886
No 255
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=25.96 E-value=49 Score=21.57 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=26.4
Q ss_pred CCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCccee
Q 032244 70 GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (144)
Q Consensus 70 ~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k 116 (144)
-+-|..+++.||=.| .-+=.+|..||+-|+|.-
T Consensus 25 ildI~~~a~kygV~k--------------deV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 25 FLDIEHFSKVYGVEK--------------QEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp EEEHHHHHHHHCCCH--------------HHHHHHHHHHHHTTSEEE
T ss_pred EEeHHHHHHHhCCCH--------------HHHHHHHHHHHHCCCeec
Confidence 356788999999655 367789999999999853
No 256
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=25.46 E-value=44 Score=26.54 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=39.7
Q ss_pred hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhH
Q 032244 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDL 132 (144)
Q Consensus 68 ~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~l 132 (144)
.||+.+..|...-|-. -..+|.+|..|..+|+++. ..+.-.+|+.++.++
T Consensus 53 ~g~~t~~elA~~~g~~--------------~~~l~rlLr~l~~~g~l~~-~~~~y~~t~~s~~l~ 102 (348)
T 3lst_A 53 DGPRTPAELAAATGTD--------------ADALRRVLRLLAVRDVVRE-SDGRFALTDKGAALR 102 (348)
T ss_dssp TSCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEE-ETTEEEECTTTGGGS
T ss_pred CCCCCHHHHHHHhCcC--------------HHHHHHHHHHHHhCCCEEe-cCCEEecCHHHHHHh
Confidence 4789999999987732 3479999999999999998 444678888876553
No 257
>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Probab=24.64 E-value=8.6 Score=26.45 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=7.8
Q ss_pred CCCchHHHHH
Q 032244 49 YDPDWYYIRA 58 (144)
Q Consensus 49 ~d~DW~y~Ra 58 (144)
.|||||++|.
T Consensus 50 ~~peW~lvr~ 59 (82)
T 1u3o_A 50 ERPGWCLVRT 59 (82)
T ss_dssp SSTTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 4799998763
No 258
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=24.56 E-value=11 Score=23.54 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=21.3
Q ss_pred CCCchhhHHHHHHHHHhCCcceecCCCCcee
Q 032244 94 SKSSGSVARHILHQLQDTNIIELDSKGGRRI 124 (144)
Q Consensus 94 ~~asg~iiR~~LqqLE~~glv~k~~~gGR~l 124 (144)
..+-|..+|---|.+|.+.||.-+++ |.+|
T Consensus 13 ensqgrmvrvrrqsmeqldlikitpd-gkrl 42 (50)
T 3tvt_B 13 ENSQGRMVRVRRQDMEQLDLIKITPD-GKRM 42 (50)
T ss_pred ccccceEEEeeecchhhcCeEEecCC-chhh
Confidence 34446678888899999999976665 4443
No 259
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=24.44 E-value=1.2e+02 Score=20.43 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcchh
Q 032244 13 HEFVKAYAAHLKRSGKIELPTWNDI 37 (144)
Q Consensus 13 ~~fI~~~A~~LK~~gki~~P~w~d~ 37 (144)
+.|++.+.+.|++.++|+++.|-.|
T Consensus 26 ~~~~~~i~~~L~~G~~V~l~gfG~F 50 (99)
T 1exe_A 26 ASFEKIITETVAKGDKVQLTGFLNI 50 (99)
T ss_dssp HHHHHHHHHHHHHTCCCCBTTTBCC
T ss_pred HHHHHHHHHHHHCCCeEEECCceEE
Confidence 5788889999999999999999888
No 260
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=24.42 E-value=45 Score=27.48 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCcceecCC
Q 032244 101 ARHILHQLQDTNIIELDSK 119 (144)
Q Consensus 101 iR~~LqqLE~~glv~k~~~ 119 (144)
||.-||.|...|++|....
T Consensus 233 IRQqLQ~LRD~g~IeFl~r 251 (257)
T 4esj_A 233 IRQQLQILRDKEIIEFKGR 251 (257)
T ss_dssp HHHHHHHHHHTTSEEECST
T ss_pred HHHHHHHHhhcCceEEecC
Confidence 8999999999999998876
No 261
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=24.25 E-value=36 Score=23.60 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=21.6
Q ss_pred HHHHHhcCCCCCCCCCCCCCC-CchhhHHHHHHHHHhCCcc
Q 032244 75 SFRRIYGGGKRNGSRPPHFSK-SSGSVARHILHQLQDTNII 114 (144)
Q Consensus 75 ~l~~~YGg~k~rG~~P~h~~~-asg~iiR~~LqqLE~~glv 114 (144)
.|-..-|.++++- --+||.. -...-=|.+|..||++|+=
T Consensus 26 ~LM~~LgA~~~~~-lgn~f~ey~v~dpPr~VLnKLE~~G~r 65 (83)
T 1jg5_A 26 ELMQQLGASKRRV-LGNNFYEYYVNDPPRIVLDKLECRGFR 65 (83)
T ss_dssp HHHHHTTCEEECC-TTCSSCEEEESSCHHHHHHHHHHTTCE
T ss_pred HHHHHhccceehh-hccccEEEEcCCChHHHHHHHhccCeE
Confidence 3555566665542 1222221 1111248899999999984
No 262
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=24.22 E-value=85 Score=25.09 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=43.2
Q ss_pred HHHHHHH-hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhhH
Q 032244 61 MARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDL 132 (144)
Q Consensus 61 ilRklYl-~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~l 132 (144)
|...|-- .||+.+..|...-|-. -..+|.+|..|..+|+++.++ +.-.+|+.+.-++
T Consensus 40 ifd~L~~~~~~~t~~eLA~~~g~~--------------~~~l~rlLr~l~~~g~l~~~~-~~y~~t~~s~~L~ 97 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRTGLT--------------RYAAQVLLEASLTIGTILLEE-DRYVLAKAGWFLL 97 (363)
T ss_dssp HHHHHHTCTTCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEEET-TEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHhCcC--------------HHHHHHHHHHHhhCCCeEecC-CEEecccchHHhh
Confidence 4445544 3799999999977632 345999999999999998863 4679999986444
No 263
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=24.20 E-value=1e+02 Score=24.35 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=41.9
Q ss_pred HHHHHHHh-CCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceec--CCCCceeCcchHh
Q 032244 61 MARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD--SKGGRRITSSGQR 130 (144)
Q Consensus 61 ilRklYl~-g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~--~~gGR~lT~~G~~ 130 (144)
|+..|--. +|..+..|....|-. ...-..++.+|..|..+|+++.. ..+.-.+|+.++.
T Consensus 41 if~~L~~~~~~~t~~ela~~~~~~-----------~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t~~s~~ 102 (352)
T 1fp2_A 41 IPNIIQNHGKPISLSNLVSILQVP-----------SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASEL 102 (352)
T ss_dssp HHHHHHHHTSCEEHHHHHHHHTCC-----------GGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHT
T ss_pred hhhhhhhcCCCccHHHHHHHhCcC-----------CCChHHHHHHHHHHHhCCeEEEecCCCCeEeCCHHHHH
Confidence 33444443 489999999988731 11245899999999999999877 2346778876653
No 264
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=23.78 E-value=61 Score=21.71 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=16.2
Q ss_pred CCCCCceeccCchHHHHHHHHHHHHcC
Q 032244 1 METAKNVKDVSPHEFVKAYAAHLKRSG 27 (144)
Q Consensus 1 m~~~~tv~DV~~~~fI~~~A~~LK~~g 27 (144)
|+. ++|+||| ++.+.+|-+.=+..|
T Consensus 1 M~~-i~IRnvp-dev~~~L~~rAa~~G 25 (73)
T 3h87_C 1 MSD-VLIRDIP-DDVLASLDAIAARLG 25 (73)
T ss_dssp -CC-CCCCCCC-HHHHHHHHHHHHHHT
T ss_pred CCc-eeecCCC-HHHHHHHHHHHHHcC
Confidence 664 8999994 566666666555554
No 265
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=23.38 E-value=1e+02 Score=21.70 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=31.2
Q ss_pred CchhhHHHHHHHHHhCCcceecCCCCc----eeCcchHhhHHHH
Q 032244 96 SSGSVARHILHQLQDTNIIELDSKGGR----RITSSGQRDLDQV 135 (144)
Q Consensus 96 asg~iiR~~LqqLE~~glv~k~~~gGR----~lT~~G~~~lD~i 135 (144)
+|-.-.|+.|..||.+-++..... || .||.-|+..+.+.
T Consensus 46 ~~TA~~RKsL~rLEAi~FI~~V~G-~r~HK~~LT~YG~~A~~qa 88 (101)
T 4asn_A 46 YSTANFRKTLNKLEAIHFIGTVTG-GKEHKLYLTEYGQQAVQQA 88 (101)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEECS-SSSCEEEECHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHhhhccc-CccceeehHHhhHHHHHHH
Confidence 455789999999999999876663 44 7999999887653
No 266
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=23.26 E-value=37 Score=21.13 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=27.1
Q ss_pred CCCCCCCchhhHHHHHHHHHhCCcceecC---CCCceeCcchHhhHHHHHH
Q 032244 90 PPHFSKSSGSVARHILHQLQDTNIIELDS---KGGRRITSSGQRDLDQVAG 137 (144)
Q Consensus 90 P~h~~~asg~iiR~~LqqLE~~glv~k~~---~gGR~lT~~G~~~lD~iA~ 137 (144)
|...+.|+|++|. ++.+ ..|++...+|+..+|.|-.
T Consensus 11 ~C~~C~GsG~~i~------------~~C~~C~G~G~v~~~~G~~~~~~~~~ 49 (53)
T 3lcz_A 11 TCPNCNGSGREEP------------EPCPKCLGKGVILTAQGSTLLHFIKK 49 (53)
T ss_dssp ECTTTTTSCEETT------------EECTTTTTSSEEECHHHHHHHHHHHH
T ss_pred cCcCCcccccCCC------------CcCCCCCCcEEEEEEeCchHHHHHHH
Confidence 4567888888873 4444 3489999999999998854
No 267
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.03 E-value=22 Score=22.87 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.6
Q ss_pred CCchhhHHHHHHHHHhCCcce
Q 032244 95 KSSGSVARHILHQLQDTNIIE 115 (144)
Q Consensus 95 ~asg~iiR~~LqqLE~~glv~ 115 (144)
.++ .+.|+-||+|.++|+=+
T Consensus 4 ~~~-~vn~qmlq~L~eMGFd~ 23 (54)
T 2cos_A 4 GSS-GVNRQMLQELVNAGCDQ 23 (54)
T ss_dssp SCC-SCCHHHHHHHHHHHCCH
T ss_pred ccc-hhHHHHHHHHHHcCCCH
Confidence 344 78999999999999864
No 268
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=22.75 E-value=42 Score=23.10 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=25.1
Q ss_pred CCCCchhhHHHHHHHHHhCCcceecCC-CCceeC
Q 032244 93 FSKSSGSVARHILHQLQDTNIIELDSK-GGRRIT 125 (144)
Q Consensus 93 ~~~asg~iiR~~LqqLE~~glv~k~~~-gGR~lT 125 (144)
|..-.-.++..+.+.|++.+-||+.++ .||.++
T Consensus 46 h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~ 79 (89)
T 1i96_V 46 HPELGERILNRVTEDLKDLAVVEMKPEMLGRDMN 79 (89)
T ss_pred CHHHHHHHHHHHHHHhhhheEEecCccccCCEEE
Confidence 334456788999999999999998873 477653
No 269
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=22.58 E-value=63 Score=24.00 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=40.8
Q ss_pred CCchHHHHHHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC
Q 032244 50 DPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (144)
Q Consensus 50 d~DW~y~RaASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~ 119 (144)
+.||-++|. |||||+|--+..-.|=.. .-+..-.+...++.|..+..||++..--+..+
T Consensus 49 ~~~W~~~Rn-------~IhGPlg~lr~~m~~l~~----~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n 107 (133)
T 3ls0_A 49 DQNWVDTQT-------YIHGPLGQLRRDMLGLAS----SLLPKDQDKAKTLAKEVFGHLERLDAAAKDRN 107 (133)
T ss_dssp TTCHHHHHH-------HHHTTTTTHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcchHHHHH-------HHhchHHHHHHHHHHHHH----hcChhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 679999986 899999876665555211 01223445567889999999999877665554
No 270
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.94 E-value=38 Score=24.27 Aligned_cols=40 Identities=8% Similarity=0.193 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCcceecCCCCceeC---cchHhhHHHHHHHHh
Q 032244 101 ARHILHQLQDTNIIELDSKGGRRIT---SSGQRDLDQVAGRIA 140 (144)
Q Consensus 101 iR~~LqqLE~~glv~k~~~gGR~lT---~~G~~~lD~iA~~i~ 140 (144)
+|++.+=||+=-=|.-.=..||-++ ..|...||+|+.+|.
T Consensus 33 ~k~a~kFLe~GdKVKvti~RGRE~~~~~e~g~~lL~r~~~~l~ 75 (112)
T 2crq_A 33 SKQIQQWIEKKYHVQVTIKRRKDAEQSEEETEEIFNQILQTMP 75 (112)
T ss_dssp HHHHHHHHHTTCEEEEEEECCTTCSCCHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHCCCEEEEEEECCccccccHHHHHHHHHHHHHHhh
Confidence 4556666665433332111377777 568888888887663
No 271
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=21.69 E-value=52 Score=24.65 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHhcCCCC--CCCCCCCCCCCchhhHHHHHHHHHhCC
Q 032244 55 YIRAASMARKIYLRGGLGVGSFRRIYGGGKR--NGSRPPHFSKSSGSVARHILHQLQDTN 112 (144)
Q Consensus 55 y~RaASilRklYl~g~~Gv~~l~~~YGg~k~--rG~~P~h~~~asg~iiR~~LqqLE~~g 112 (144)
++-...+.|++| +..++..|.+.||-... +.++.-.-+.+...|.+.+++.++++|
T Consensus 160 ~iDt~~l~~~~~--~~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~ 217 (224)
T 2f96_A 160 SFDTATLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMG 217 (224)
T ss_dssp EEEHHHHHHHHH--SCCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeHHHHHHHHc--CCCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556777776 56789999999976421 122222223445567778888887764
No 272
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=21.23 E-value=91 Score=27.12 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCC
Q 032244 58 AASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (144)
Q Consensus 58 aASilRklYl~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~ 119 (144)
||.|+-.|...|-+.++.+-..+..+. +..+......+-.-++.+|.+|-..|||+..+.
T Consensus 103 a~~I~~~ll~~G~~t~~~ll~~~~~~~--~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 103 GELIVEELLLNGKLTMSAVVKKVADRL--TETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHHHHH--HHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHhhc--ccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 566777788889998888877665321 111223344567899999999999999998773
No 273
>2pd0_A Hypothetical protein; structural genomics, structural genomics consortium, SGC, UN function; HET: MES; 2.30A {Cryptosporidium parvum}
Probab=21.22 E-value=58 Score=26.30 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=30.2
Q ss_pred CCCceeccCchHHHHHHHHHHHHcCCCCCCCcchhcc
Q 032244 3 TAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVK 39 (144)
Q Consensus 3 ~~~tv~DV~~~~fI~~~A~~LK~~gki~~P~w~d~vK 39 (144)
++..+.|.++++|++.+-+++.+++.--++-++.|.|
T Consensus 37 ~gt~I~~~~keeF~~kvne~~~~~~~~lvdGYAPFCK 73 (223)
T 2pd0_A 37 RGSYIPRMSPYEFLRNVNNYIIENNPTLVDGYADFCK 73 (223)
T ss_dssp SSCCCCSSCHHHHHHHHHHHHHHHCCCCEECSSTTEE
T ss_pred CceecCCCCHHHHHHHHHHHHHhcCCcccccccccce
Confidence 3467888999999999999877777666788888877
No 274
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=21.15 E-value=1.2e+02 Score=24.55 Aligned_cols=26 Identities=31% Similarity=0.059 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCcchhcccCCCccC
Q 032244 14 EFVKAYAAHLKRSGKIELPTWNDIVKTGTLKEL 46 (144)
Q Consensus 14 ~fI~~~A~~LK~~gki~~P~w~d~vKTg~~kE~ 46 (144)
+-|...++--.+.| +|||||+++..-
T Consensus 173 eei~~A~~ia~eaG-------ADfVKTSTGf~~ 198 (260)
T 3r12_A 173 EEKIAACVISKLAG-------AHFVKTSTGFGT 198 (260)
T ss_dssp HHHHHHHHHHHHTT-------CSEEECCCSSSS
T ss_pred HHHHHHHHHHHHhC-------cCEEEcCCCCCC
Confidence 44555566666655 899999998863
No 275
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=20.71 E-value=92 Score=24.62 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=39.0
Q ss_pred hCCCchhHHHHHhcCCCCCCCCCCCCCCCchhhHHHHHHHHHhCCcceecCCCCceeCcchHhh
Q 032244 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRD 131 (144)
Q Consensus 68 ~g~~Gv~~l~~~YGg~k~rG~~P~h~~~asg~iiR~~LqqLE~~glv~k~~~gGR~lT~~G~~~ 131 (144)
.+|..+..|....|-. -..++.+|..|..+|+++... +.-.+|+.....
T Consensus 62 ~~~~t~~eLA~~~g~~--------------~~~l~rlLr~L~~~gll~~~~-~~y~~t~~~~~~ 110 (359)
T 1x19_A 62 EGPKDLATLAADTGSV--------------PPRLEMLLETLRQMRVINLED-GKWSLTEFADYM 110 (359)
T ss_dssp TCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHH
T ss_pred CCCCCHHHHHHHhCcC--------------hHHHHHHHHHHHhCCCeEeeC-CeEecCHHHHHH
Confidence 3899999999988742 468999999999999998865 377888754433
No 276
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=20.34 E-value=41 Score=22.19 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcchh
Q 032244 13 HEFVKAYAAHLKRSGKIELPTWNDI 37 (144)
Q Consensus 13 ~~fI~~~A~~LK~~gki~~P~w~d~ 37 (144)
+.|++.+.+.|++.++|+++.|-.|
T Consensus 26 ~~~~~~i~~~L~~g~~V~l~gfG~F 50 (90)
T 2o97_B 26 DAIIASVTESLKEGDDVALVGFGTF 50 (90)
T ss_dssp HHHHHHHHHHHHTTCCEEETTTEEE
T ss_pred HHHHHHHHHHHHCCCeEEECCCEEE
Confidence 5688889999999999999999888
No 277
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=20.26 E-value=48 Score=26.57 Aligned_cols=30 Identities=20% Similarity=-0.007 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCcchhcccCCCccCCCCC
Q 032244 14 EFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYD 50 (144)
Q Consensus 14 ~fI~~~A~~LK~~gki~~P~w~d~vKTg~~kE~~P~d 50 (144)
+-|...++--.+.| +|||||+++.....-.
T Consensus 157 eei~~a~~ia~~aG-------ADfVKTSTGf~~ggAt 186 (239)
T 3ngj_A 157 EEKVEVCKRCVAAG-------AEYVKTSTGFGTHGAT 186 (239)
T ss_dssp HHHHHHHHHHHHHT-------CSEEECCCSSSSCCCC
T ss_pred HHHHHHHHHHHHHC-------cCEEECCCCCCCCCCC
Confidence 34555666556655 8999999987543333
No 278
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=20.14 E-value=22 Score=23.43 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=19.2
Q ss_pred eeccCchHHHHHHHHHHHHcCCC
Q 032244 7 VKDVSPHEFVKAYAAHLKRSGKI 29 (144)
Q Consensus 7 v~DV~~~~fI~~~A~~LK~~gki 29 (144)
++.++++.|+++|-+.+.++|.+
T Consensus 47 ~hgiD~d~ll~eLn~~i~~~~~~ 69 (76)
T 2k53_A 47 VHGIDADKLVKELNEYFEKKEVL 69 (76)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHhhcchH
Confidence 56789999999999999877644
Done!