BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032245
MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL
EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT
ASGDILPIKKGPQLPPKLGPRGKI

High Scoring Gene Products

Symbol, full name Information P value
PSAH2
AT1G52230
protein from Arabidopsis thaliana 2.4e-44
PSAH-1
AT3G16140
protein from Arabidopsis thaliana 5.0e-44

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032245
        (144 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2037440 - symbol:PSAH2 "AT1G52230" species:370...   467  2.4e-44   1
TAIR|locus:2093377 - symbol:PSAH-1 "AT3G16140" species:37...   464  5.0e-44   1


>TAIR|locus:2037440 [details] [associations]
            symbol:PSAH2 "AT1G52230" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009522 "photosystem I"
            evidence=IEA] [GO:0009538 "photosystem I reaction center"
            evidence=IEA;ISS] [GO:0015979 "photosynthesis"
            evidence=IEA;ISS;RCA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
            [GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0009657 "plastid organization"
            evidence=RCA] [GO:0009773 "photosynthetic electron transport in
            photosystem I" evidence=RCA] [GO:0010207 "photosystem II assembly"
            evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
            evidence=RCA] InterPro:IPR004928 Pfam:PF03244 GO:GO:0016021
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009535 GO:GO:0010287
            GO:GO:0015979 EMBL:AC022354 GO:GO:0009538 TCDB:5.B.4.1.1
            UniGene:At.25110 eggNOG:NOG314087 HOGENOM:HOG000265525 KO:K02695
            ProtClustDB:PLN00017 EMBL:AJ245632 EMBL:AF385712 EMBL:AY133667
            EMBL:AY085302 IPI:IPI00536453 PIR:C96562 RefSeq:NP_175633.1
            ProteinModelPortal:Q9SUI6 SMR:Q9SUI6 STRING:Q9SUI6 PaxDb:Q9SUI6
            PRIDE:Q9SUI6 EnsemblPlants:AT1G52230.1 GeneID:841653
            KEGG:ath:AT1G52230 TAIR:At1g52230 InParanoid:Q9SUI6 OMA:EDIGNTT
            PhylomeDB:Q9SUI6 Genevestigator:Q9SUI6 GermOnline:AT1G52230
            Uniprot:Q9SUI6
        Length = 145

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 93/126 (73%), Positives = 102/126 (80%)

Query:     1 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
             MAS ATIAAVQP A +KGLGGSSLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFD
Sbjct:     1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query:    60 LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSA 119
             LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA
Sbjct:    61 LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query:   120 TASGDI 125
              ++GD+
Sbjct:   121 NSTGDV 126


>TAIR|locus:2093377 [details] [associations]
            symbol:PSAH-1 "AT3G16140" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009522 "photosystem I"
            evidence=IEA] [GO:0009538 "photosystem I reaction center"
            evidence=IEA;ISS] [GO:0015979 "photosynthesis"
            evidence=IEA;ISS;RCA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009657 "plastid
            organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
            evidence=RCA] InterPro:IPR004928 Pfam:PF03244 GO:GO:0016021
            EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB012247 GO:GO:0009535
            GO:GO:0015979 GO:GO:0009538 EMBL:AJ245631 EMBL:AY088822 EMBL:Z35381
            IPI:IPI00522229 RefSeq:NP_188235.1 UniGene:At.25110
            UniGene:At.25220 UniGene:At.72250 ProteinModelPortal:Q9SUI7
            SMR:Q9SUI7 STRING:Q9SUI7 PaxDb:Q9SUI7 PRIDE:Q9SUI7
            EnsemblPlants:AT3G16140.1 GeneID:820859 KEGG:ath:AT3G16140
            TAIR:At3g16140 eggNOG:NOG314087 HOGENOM:HOG000265525
            InParanoid:Q9SUI7 KO:K02695 OMA:MENTTGS PhylomeDB:Q9SUI7
            ProtClustDB:PLN00017 BioCyc:MetaCyc:MONOMER-1093
            Genevestigator:Q9SUI7 GermOnline:AT3G16140 Uniprot:Q9SUI7
        Length = 145

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 91/126 (72%), Positives = 103/126 (81%)

Query:     1 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
             MASLAT+AAV+P A IKGLGGSSLAG KL++KP+R SF+PKS +A  VVAKYGDKSVYFD
Sbjct:     1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query:    60 LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSA 119
             LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA
Sbjct:    61 LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query:   120 TASGDI 125
             T++G++
Sbjct:   121 TSTGEV 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       114   0.00091  102 3  11 23  0.50    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  490 (52 KB)
  Total size of DFA:  100 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.55u 0.08s 11.63t   Elapsed:  00:00:34
  Total cpu time:  11.55u 0.08s 11.63t   Elapsed:  00:00:34
  Start:  Fri May 10 23:01:18 2013   End:  Fri May 10 23:01:52 2013

Back to top