BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032245
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SUI6|PSAH2_ARATH Photosystem I reaction center subunit VI-2, chloroplastic
OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1
Length = 145
Score = 242 bits (617), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/145 (83%), Positives = 132/145 (91%), Gaps = 1/145 (0%)
Query: 1 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
MAS ATIAAVQP A +KGLGGSSLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFD
Sbjct: 1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60
Query: 60 LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSA 119
LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGS L Y SA
Sbjct: 61 LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120
Query: 120 TASGDILPIKKGPQLPPKLGPRGKI 144
++GD+LPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145
>sp|Q9SUI7|PSAH1_ARATH Photosystem I reaction center subunit VI-1, chloroplastic
OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1
Length = 145
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/145 (82%), Positives = 133/145 (91%), Gaps = 1/145 (0%)
Query: 1 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
MASLAT+AAV+P A IKGLGGSSLAG KL++KP+R SF+PKS +A VVAKYGDKSVYFD
Sbjct: 1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60
Query: 60 LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSA 119
LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGS L Y SA
Sbjct: 61 LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120
Query: 120 TASGDILPIKKGPQLPPKLGPRGKI 144
T++G++LPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145
>sp|O04006|PSAH_BRARA Photosystem I reaction center subunit VI, chloroplastic OS=Brassica
rapa GN=PSAH PE=2 SV=1
Length = 145
Score = 240 bits (612), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 132/145 (91%), Gaps = 1/145 (0%)
Query: 1 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
MAS ATIAAVQP + +KGLGGSSL G KL +KP+RQSF+PKS +AGAVVAKYGDKSVYFD
Sbjct: 1 MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFD 60
Query: 60 LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSA 119
LEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGS L Y SA
Sbjct: 61 LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120
Query: 120 TASGDILPIKKGPQLPPKLGPRGKI 144
+++GD+LPIK+GPQ PKLGPRGK+
Sbjct: 121 SSTGDVLPIKRGPQEKPKLGPRGKL 145
>sp|P22179|PSAH_SPIOL Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia
oleracea GN=PSAH PE=1 SV=1
Length = 144
Score = 238 bits (608), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 115/144 (79%), Positives = 128/144 (88%)
Query: 1 MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQSF+ + ++GA+VAKYGDKSVYFDL
Sbjct: 1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60
Query: 61 EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120
ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGS L Y SA
Sbjct: 61 EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120
Query: 121 ASGDILPIKKGPQLPPKLGPRGKI 144
A D+LPI +GPQ PPKLGPRGKI
Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144
>sp|P20143|PSAH_HORVU Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum
vulgare GN=PSAH PE=1 SV=1
Length = 143
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 101/143 (70%), Positives = 120/143 (83%), Gaps = 2/143 (1%)
Query: 4 LATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKA--GAVVAKYGDKSVYFDLE 61
+A++ AVQPA +KGL GSS++G KL V+P+ + + +A AVVAKYG+KSVYFDL+
Sbjct: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLD 60
Query: 62 DLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATA 121
D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKRGLLLKFL++GGGS +AY SA+A
Sbjct: 61 DIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASA 120
Query: 122 SGDILPIKKGPQLPPKLGPRGKI 144
S D+LPIKKGPQLPP GPRGKI
Sbjct: 121 SPDLLPIKKGPQLPPTPGPRGKI 143
>sp|Q0DG05|PSAH_ORYSJ Photosystem I reaction center subunit VI, chloroplastic OS=Oryza
sativa subsp. japonica GN=PSAH PE=2 SV=1
Length = 142
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/146 (71%), Positives = 122/146 (83%), Gaps = 9/146 (6%)
Query: 4 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYF 58
+A++ AVQP +KGL GSS++G KL V+P+ R + RP++ AVVAKYG+KSVYF
Sbjct: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYF 56
Query: 59 DLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFS 118
DLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFL+LGGGS +AY S
Sbjct: 57 DLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVS 116
Query: 119 ATASGDILPIKKGPQLPPKLGPRGKI 144
A+AS D+LPIKKGPQLPP GPRGKI
Sbjct: 117 ASASPDLLPIKKGPQLPPTPGPRGKI 142
>sp|A2Y7D9|PSAH_ORYSI Photosystem I reaction center subunit VI, chloroplastic OS=Oryza
sativa subsp. indica GN=PSAH PE=2 SV=1
Length = 142
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/146 (71%), Positives = 122/146 (83%), Gaps = 9/146 (6%)
Query: 4 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYF 58
+A++ AVQP +KGL GSS++G KL V+P+ R + RP++ AVVAKYG+KSVYF
Sbjct: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYF 56
Query: 59 DLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFS 118
DLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFL+LGGGS +AY S
Sbjct: 57 DLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVS 116
Query: 119 ATASGDILPIKKGPQLPPKLGPRGKI 144
A+AS D+LPIKKGPQLPP GPRGKI
Sbjct: 117 ASASPDLLPIKKGPQLPPTPGPRGKI 142
>sp|O65101|PSAH_MAIZE Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays
GN=PSAH PE=2 SV=1
Length = 142
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/145 (75%), Positives = 124/145 (85%), Gaps = 4/145 (2%)
Query: 1 MASLATIAAVQPATIKGLGGSSLAGTKLTV-KPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
MASLA ++ V+P IKGL GSS++G KL V +P+ +S R +A AVVAKYGDKSVYFD
Sbjct: 1 MASLAAVS-VKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFD 57
Query: 60 LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSA 119
L+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS LAY SA
Sbjct: 58 LDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSA 117
Query: 120 TASGDILPIKKGPQLPPKLGPRGKI 144
+AS D+LPIKKGPQ PP+ GPRGKI
Sbjct: 118 SASPDLLPIKKGPQEPPQPGPRGKI 142
>sp|P13352|PSAH_CHLRE Photosystem I reaction center subunit VI, chloroplastic
OS=Chlamydomonas reinhardtii GN=PSAH PE=2 SV=1
Length = 130
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 38 RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFT 97
R + KA V AKYG+ S YFDL+D+ NTTG WD+YG D Y Q+KFF +
Sbjct: 19 RVAARKAVRVSAKYGENSRYFDLQDMENTTGSWDMYGVDEKKRYPDNQAKFFTQATDIIS 78
Query: 98 KRGLLLKFLILGGGSTLAYFSATASGDI-LPIKKGPQLPPKLGPRGKI 144
+R L + L G + + + + D LPI KGPQ + G G +
Sbjct: 79 RRESLRALVALSGIAAIVTYGLKGAKDADLPITKGPQTTGENGKGGSV 126
>sp|P20121|PSAH_PEA Photosystem I reaction center subunit VI (Fragment) OS=Pisum
sativum GN=PSAH PE=1 SV=1
Length = 36
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/36 (91%), Positives = 35/36 (97%)
Query: 50 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 85
KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct: 1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36
>sp|P42050|PSAH_CUCSA Photosystem I reaction center subunit VI, chloroplastic
(Fragment) OS=Cucumis sativus GN=PSAH PE=1 SV=1
Length = 24
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 17/23 (73%)
Query: 51 YGDKSVYFDLEDLGNTTGQWDLY 73
Y DKSVYFDLED GNT GQ Y
Sbjct: 2 YXDKSVYFDLEDKGNTXGQXXXY 24
>sp|Q6CWI4|HIR3_KLULA Histone transcription regulator 3 homolog OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=HIR3 PE=3 SV=1
Length = 1651
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 60 LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLIL 108
+ED+ N+ ++ +G+ A S YN++ S +T + F+K +L +F I+
Sbjct: 638 IEDIENSLKEFPDFGTVAYSNYNNISSLSLKTVQSQFSKIKMLRRFTIV 686
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,746,724
Number of Sequences: 539616
Number of extensions: 2196466
Number of successful extensions: 4868
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4848
Number of HSP's gapped (non-prelim): 16
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)