Query 032245
Match_columns 144
No_of_seqs 32 out of 34
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 18:45:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_H Photosystem I reaction 100.0 4.2E-86 1.4E-90 512.3 -5.3 144 1-144 1-144 (144)
2 1w0n_A Endo-1,4-beta-xylanase 42.9 6.8 0.00023 30.0 0.7 31 43-73 69-123 (131)
3 3ech_C 25-MER fragment of prot 41.9 2.8 9.7E-05 24.2 -1.2 8 68-75 15-22 (25)
4 1u2k_A Peroxidase/catalase HPI 37.1 7.8 0.00027 32.0 0.2 27 68-100 275-301 (309)
5 1llp_A LIP4.15, lignin peroxid 34.2 10 0.00034 32.0 0.4 21 81-101 254-274 (343)
6 3q3u_A Lignin peroxidase; oxid 31.5 11 0.00037 31.7 0.2 18 84-101 256-273 (338)
7 3e2o_A CCP, cytochrome C perox 27.1 13 0.00046 30.4 0.0 19 81-99 251-269 (294)
8 3som_A Methylmalonic aciduria 27.0 29 0.00098 29.3 2.0 28 77-107 215-242 (286)
9 3fmu_A VersatIle peroxidase VP 24.6 24 0.00082 29.6 1.1 21 81-101 247-267 (331)
10 3m5q_A Manganese peroxidase 1; 24.2 25 0.00084 29.8 1.1 19 83-101 260-278 (357)
11 2e39_A Peroxidase; heme protei 22.9 27 0.00091 29.4 1.1 20 81-100 262-281 (344)
12 1d1d_A Protein (capsid protein 22.8 45 0.0016 27.3 2.4 55 72-135 128-185 (262)
13 3riv_A Ascorbate peroxidase; a 21.3 19 0.00063 28.9 -0.2 17 83-99 239-255 (271)
14 2cca_A Peroxidase/catalase T; 20.7 23 0.00078 33.0 0.2 28 68-101 706-733 (740)
15 3vli_A Catalase-peroxidase 2; 20.4 23 0.00079 33.1 0.2 29 66-100 695-723 (737)
No 1
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=100.00 E-value=4.2e-86 Score=512.33 Aligned_cols=144 Identities=80% Similarity=1.278 Sum_probs=68.8
Q ss_pred CcchhhhhhhccccccccccCCCCCceeeeccCccccCCCCcccceeEeeeCCeeeeeeccCCCCCcccceeeccCCCCC
Q 032245 1 MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSP 80 (144)
Q Consensus 1 masla~~~~~~~~~v~gl~gSs~~g~kl~~kp~~~~~r~~~~ra~~v~AKYGdkSvYFDL~Di~nTTG~WDlYGsDaps~ 80 (144)
||||||+++|||.+||||+||||+|+||+|||++++.|+++.|+++|+||||||||||||+|||||||||||||+|+|||
T Consensus 1 maslat~~a~~p~~~kgl~gSs~~G~Kl~vkps~~~~~~~~~Ra~~v~AKYGdkSvYFDL~Di~nTTG~WDlYG~D~~s~ 80 (144)
T 2wsc_H 1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSP 80 (144)
T ss_dssp ----------------------------------------------------------CCSCCCCSSCTTSSCCSSCSCC
T ss_pred CcchhhhhhcCccccccccccccccceEeecccccccccccccccceeeccCcceEEEEhhhcccccccceeccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhhccchhhHHHHHHHHHhCCceEEEeecccCCcccccccCCCCCCCCCCCCCC
Q 032245 81 YNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKI 144 (144)
Q Consensus 81 Yn~lQskFFe~fA~~ftkR~lllkfl~LgG~~~l~y~ga~as~D~LPIk~GPQ~pp~~GPRgki 144 (144)
||+||+||||+||+||||||+|||||+|||+++++|+++++++|+||||+|||+||++||||||
T Consensus 81 Yn~lQskFFe~~A~~ftkR~~ll~fL~L~g~~~l~y~~~~a~~~~LPI~~GPq~pp~~GPRgki 144 (144)
T 2wsc_H 81 YNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDVLPITRGPQQPPKLGPRGKI 144 (144)
T ss_dssp CCCSCCSSSSSSSCTTSSCTTCSTTTTTTGGGTTTTTTSCCSSCCCC-----------------
T ss_pred CChHHHHHHHHhhccccHHHHHHHHHHhcCcceEEEeccCCCccccccccCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 2
>1w0n_A Endo-1,4-beta-xylanase D; hydrolase, carbohydrate-binding module, carbohydrate binding, CBM36; 0.8A {Paenibacillus polymyxa} SCOP: b.18.1.28 PDB: 1ux7_A
Probab=42.89 E-value=6.8 Score=30.03 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=21.4
Q ss_pred ccceeEeeeCCe---eeeeecc-----CC----------------CCCcccceee
Q 032245 43 KAGAVVAKYGDK---SVYFDLE-----DL----------------GNTTGQWDLY 73 (144)
Q Consensus 43 ra~~v~AKYGdk---SvYFDL~-----Di----------------~nTTG~WDlY 73 (144)
--+.|+-|-|.. +.||-+. -+ -+..|+||+|
T Consensus 69 n~A~VdLrigg~~~GTfy~~gt~P~v~t~nnv~~~tg~q~vel~vT~dnGtwD~Y 123 (131)
T 1w0n_A 69 GTAKVDLVIGGVTVGSFNFTGKTPTVQTLSNITHATGDQEIKLALTSDDGTWDAY 123 (131)
T ss_dssp SEEEEEEEETTEEEEEEEEESSSCEEEEEEEEECCCEEEEEEEEESCSSSSCCEE
T ss_pred CceEEEEEeCCeeeEEEEeccccceeeeeccccccCCceEEEEEEECCCCceeeE
Confidence 346777788876 5676542 23 3489999999
No 3
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=41.90 E-value=2.8 Score=24.23 Aligned_cols=8 Identities=63% Similarity=1.568 Sum_probs=6.4
Q ss_pred ccceeecc
Q 032245 68 GQWDLYGS 75 (144)
Q Consensus 68 G~WDlYGs 75 (144)
..|||||.
T Consensus 15 nawdly~e 22 (25)
T 3ech_C 15 NAWDLYGE 22 (26)
T ss_dssp THHHHHHS
T ss_pred hHHHHHHH
Confidence 46999985
No 4
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A
Probab=37.06 E-value=7.8 Score=31.98 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=19.4
Q ss_pred ccceeeccCCCCCCChhHHHHHHHhhccchhhH
Q 032245 68 GQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG 100 (144)
Q Consensus 68 G~WDlYGsDaps~Yn~lQskFFe~fA~~ftkR~ 100 (144)
.-|+.|.+|+ .|.+||+.|++.+.|=.
T Consensus 275 ~~v~~yA~d~------~~~~F~~dFa~A~~Km~ 301 (309)
T 1u2k_A 275 AVAEVYASSD------AHEKFVKDFVAAWVKVM 301 (309)
T ss_dssp HHHHHHTSSS------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC------cHHHHHHHHHHHHHHHH
Confidence 3455565543 49999999999888744
No 5
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*
Probab=34.23 E-value=10 Score=32.00 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=15.7
Q ss_pred CChhHHHHHHHhhccchhhHH
Q 032245 81 YNSLQSKFFETFAAPFTKRGL 101 (144)
Q Consensus 81 Yn~lQskFFe~fA~~ftkR~l 101 (144)
|-..|.+||+.|+..+.|=+-
T Consensus 254 yA~d~~~F~~dFa~Am~Km~~ 274 (343)
T 1llp_A 254 FVGNQSKLVDDFQFIFLALTQ 274 (343)
T ss_dssp TTTCHHHHHHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHc
Confidence 444599999999987766443
No 6
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0
Probab=31.51 E-value=11 Score=31.71 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=14.4
Q ss_pred hHHHHHHHhhccchhhHH
Q 032245 84 LQSKFFETFAAPFTKRGL 101 (144)
Q Consensus 84 lQskFFe~fA~~ftkR~l 101 (144)
.|.+||+.|++.+.|=.-
T Consensus 256 d~~~F~~dFa~Am~Kl~~ 273 (338)
T 3q3u_A 256 NQQAMVNNFEAVMSRLAV 273 (338)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 499999999998776443
No 7
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ...
Probab=27.06 E-value=13 Score=30.44 Aligned_cols=19 Identities=42% Similarity=0.735 Sum_probs=14.4
Q ss_pred CChhHHHHHHHhhccchhh
Q 032245 81 YNSLQSKFFETFAAPFTKR 99 (144)
Q Consensus 81 Yn~lQskFFe~fA~~ftkR 99 (144)
|-..|.+||+.||..+.|=
T Consensus 251 yA~d~~~F~~dFa~A~~Km 269 (294)
T 3e2o_A 251 YANDQDKFFKDFSKAFEKL 269 (294)
T ss_dssp HHTCHHHHHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHH
Confidence 3334999999999877663
No 8
>3som_A Methylmalonic aciduria and homocystinuria type C; structural genomics, structural genomics consortium, SGC, CB organic aciduria; HET: MSE B12 FLC 5AD; 2.40A {Homo sapiens}
Probab=27.00 E-value=29 Score=29.34 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=17.6
Q ss_pred CCCCCChhHHHHHHHhhccchhhHHHHHHHH
Q 032245 77 APSPYNSLQSKFFETFAAPFTKRGLLLKFLI 107 (144)
Q Consensus 77 aps~Yn~lQskFFe~fA~~ftkR~lllkfl~ 107 (144)
...+|...|.+||.| |=.+|-.||.+.-
T Consensus 215 p~erYSe~Q~~YFsT---pPa~R~~LL~~~~ 242 (286)
T 3som_A 215 PQERYSEEQKAYFST---PPAQRLALLGLAQ 242 (286)
T ss_dssp CSCCCCHHHHHHHHS---CGGGC--------
T ss_pred cccccCHHHHHHhCC---ChHHHHHHhcccC
Confidence 446999999999999 8888887776543
No 9
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A*
Probab=24.61 E-value=24 Score=29.55 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=15.6
Q ss_pred CChhHHHHHHHhhccchhhHH
Q 032245 81 YNSLQSKFFETFAAPFTKRGL 101 (144)
Q Consensus 81 Yn~lQskFFe~fA~~ftkR~l 101 (144)
|-..|.+||+.|+..+.|=+-
T Consensus 247 yA~d~~~F~~dFa~Am~Kl~~ 267 (331)
T 3fmu_A 247 MVNNQPKIQNRFAATMSKMAL 267 (331)
T ss_dssp TTTCHHHHHHHHHHHHHHHHT
T ss_pred HhhhHHHHHHHHHHHHHHHHh
Confidence 334499999999988776443
No 10
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A*
Probab=24.22 E-value=25 Score=29.84 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.0
Q ss_pred hhHHHHHHHhhccchhhHH
Q 032245 83 SLQSKFFETFAAPFTKRGL 101 (144)
Q Consensus 83 ~lQskFFe~fA~~ftkR~l 101 (144)
..|.+||+.|+..+.|=+-
T Consensus 260 ~dq~~F~~dFa~Am~Km~~ 278 (357)
T 3m5q_A 260 NEQAFMAASFRAAMSKLAV 278 (357)
T ss_dssp TCHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3499999999998777443
No 11
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A*
Probab=22.88 E-value=27 Score=29.38 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=15.4
Q ss_pred CChhHHHHHHHhhccchhhH
Q 032245 81 YNSLQSKFFETFAAPFTKRG 100 (144)
Q Consensus 81 Yn~lQskFFe~fA~~ftkR~ 100 (144)
|-..|.+||+.|+..+.|=.
T Consensus 262 yA~d~~~F~~dFa~Am~Km~ 281 (344)
T 2e39_A 262 MTSSNEVMGQRYRAAMAKMS 281 (344)
T ss_dssp TSSCHHHHHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHH
Confidence 44459999999998877643
No 12
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=22.78 E-value=45 Score=27.31 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=34.0
Q ss_pred eeccCCCCCCChhHHH--HHHH-hhccchhhHHHHHHHHHhCCceEEEeecccCCcccccccCCCCC
Q 032245 72 LYGSDAPSPYNSLQSK--FFET-FAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLP 135 (144)
Q Consensus 72 lYGsDaps~Yn~lQsk--FFe~-fA~~ftkR~lllkfl~LgG~~~l~y~ga~as~D~LPIk~GPQ~p 135 (144)
+=|+| +-.|+.+|+. .+.. --.+.+ -+++.++.+|+. .......++-|+.||+.|
T Consensus 128 i~G~~-~G~tst~qeQ~~~m~~~~~~~v~-~~a~kaw~~l~~-------~~~s~~si~~IkQGPkEp 185 (262)
T 1d1d_A 128 LKGLA-DGMVGNPQGQAALLRPGELVAIT-ASALQAFREVAR-------LAEPAGPWADITQGPSES 185 (262)
T ss_dssp HHTCS-TTTTTCHHHHHHHSCTTHHHHHH-HHHHHHHHHHHH-------CCCCCCTTTSCCCCSSSC
T ss_pred hcCcC-CCCcccHHHHHHhccccccchHH-HHHHHHHHHhcc-------ccCCCCCHhHhhhcCCCc
Confidence 45666 5667777654 2221 111221 478888999865 234556679999999876
No 13
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A*
Probab=21.33 E-value=19 Score=28.88 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=13.8
Q ss_pred hhHHHHHHHhhccchhh
Q 032245 83 SLQSKFFETFAAPFTKR 99 (144)
Q Consensus 83 ~lQskFFe~fA~~ftkR 99 (144)
..|.+||+.|+..+.|=
T Consensus 239 ~~~~~F~~dFa~Am~Km 255 (271)
T 3riv_A 239 KDNDRFNKDFANAFKKL 255 (271)
T ss_dssp HCHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHH
Confidence 34899999999987763
No 14
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*
Probab=20.66 E-value=23 Score=33.05 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=20.5
Q ss_pred ccceeeccCCCCCCChhHHHHHHHhhccchhhHH
Q 032245 68 GQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGL 101 (144)
Q Consensus 68 G~WDlYGsDaps~Yn~lQskFFe~fA~~ftkR~l 101 (144)
.-|++|.+|+ .|.+||+.|++.++|=.-
T Consensus 706 ~~ve~YA~dd------~~~~F~~dFa~Am~Km~~ 733 (740)
T 2cca_A 706 ALVEVYGADD------AQPKFVQDFVAAWDKVMN 733 (740)
T ss_dssp HHHHHHTSTT------CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccC------cHhHHHHHHHHHHHHHHc
Confidence 4456666643 599999999999888543
No 15
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A*
Probab=20.41 E-value=23 Score=33.05 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=21.8
Q ss_pred CcccceeeccCCCCCCChhHHHHHHHhhccchhhH
Q 032245 66 TTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG 100 (144)
Q Consensus 66 TTG~WDlYGsDaps~Yn~lQskFFe~fA~~ftkR~ 100 (144)
|-.-|++|.+|+ .|.+||+.|++.+.|=.
T Consensus 695 tr~~ve~YA~dd------~q~~F~~DFa~Am~Km~ 723 (737)
T 3vli_A 695 LRAISEVYGSAD------AEKKLVHDFVDTWSKVM 723 (737)
T ss_dssp HHHHHHHHTSTT------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC------cHHHHHHHHHHHHHHHh
Confidence 344577787654 58999999999888743
Done!