BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032246
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEP
PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQPPF
FFWVGKICFCSFFLFFIPFLLFVK

High Scoring Gene Products

Symbol, full name Information P value
AT4G32915 protein from Arabidopsis thaliana 8.6e-17
APH_1113
glutamyl-tRNA(Gln) amidotransferase, C subunit 		protein from Anaplasma phagocytophilum HZ 3.0e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032246
        (144 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006545 - symbol:AT4G32915 "AT4G32915" speci...   207  8.6e-17   1
TIGR_CMR|APH_1113 - symbol:APH_1113 "glutamyl-tRNA(Gln) a...    98  3.0e-05   1


>TAIR|locus:505006545 [details] [associations]
            symbol:AT4G32915 "AT4G32915" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006450 "regulation of translational
            fidelity" evidence=IEA] HAMAP:MF_00122 InterPro:IPR003837
            Pfam:PF02686 GO:GO:0005739 GO:GO:0005524 GO:GO:0009507
            EMBL:CP002687 GO:GO:0016874 GO:GO:0006412 EMBL:AL031804
            EMBL:AL161582 GO:GO:0006450 EMBL:AF240465 EMBL:AY087891
            IPI:IPI00529154 PIR:T05299 RefSeq:NP_567909.1 UniGene:At.2470
            ProteinModelPortal:F4JV80 SMR:F4JV80 PRIDE:F4JV80
            EnsemblPlants:AT4G32915.1 GeneID:829428 KEGG:ath:AT4G32915
            TAIR:At4g32915 eggNOG:COG0721 HOGENOM:HOG000240282
            InParanoid:Q8LAD3 OMA:CETKIRR TIGRFAMs:TIGR00135 Uniprot:F4JV80
        Length = 155

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 40/53 (75%), Positives = 47/53 (88%)

Query:    58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
             L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA
Sbjct:    61 LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRA 113


>TIGR_CMR|APH_1113 [details] [associations]
            symbol:APH_1113 "glutamyl-tRNA(Gln) amidotransferase, C
            subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0006424
            "glutamyl-tRNA aminoacylation" evidence=ISS] HAMAP:MF_00122
            InterPro:IPR003837 Pfam:PF02686 GO:GO:0005524 GO:GO:0006412
            GO:GO:0016740 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006450
            GO:GO:0050567 eggNOG:COG0721 TIGRFAMs:TIGR00135 KO:K02435
            HOGENOM:HOG000017522 OMA:QEHDFFV RefSeq:YP_505661.1
            ProteinModelPortal:Q2GIZ0 STRING:Q2GIZ0 GeneID:3930989
            KEGG:aph:APH_1113 PATRIC:20950992 ProtClustDB:CLSK747386
            BioCyc:APHA212042:GHPM-1119-MONOMER Uniprot:Q2GIZ0
        Length = 106

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
             ++ R+++  R+ +   EV+ +  ++  V+ WFG L +VD   VDP L  G
Sbjct:    17 ELARVSKLVRLQIPEEEVDTYCRQLGDVVSWFGMLAEVDTTDVDPVLHGG 66


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       103   0.00091  102 3  11 22  0.40    30
                                                     29  0.49    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  117 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.95u 0.11s 10.06t   Elapsed:  00:00:01
  Total cpu time:  9.95u 0.11s 10.06t   Elapsed:  00:00:01
  Start:  Fri May 10 23:03:25 2013   End:  Fri May 10 23:03:26 2013

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