BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032246
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|C Chain C, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|F Chain F, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|I Chain I, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|L Chain L, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|O Chain O, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|R Chain R, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|U Chain U, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|X Chain X, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|C Chain C, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|F Chain F, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|I Chain I, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|L Chain L, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|O Chain O, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|R Chain R, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|U Chain U, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|X Chain X, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|C Chain C, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|F Chain F, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|I Chain I, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|L Chain L, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|O Chain O, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|R Chain R, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|U Chain U, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|X Chain X, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 94
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 35/55 (63%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQ 117
V ++A+ AR+ L E+E F ++ ++D+ QL+++D ++V+P ++ + P +
Sbjct: 7 VLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEPYIQEFEETPMR 61
>pdb|2DF4|C Chain C, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|C Chain C, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2F2A|C Chain C, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
pdb|2G5H|C Chain C, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|C Chain C, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|C Chain C, The High Resolution Structure Of Gatcab
Length = 100
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPA 107
+V +A AR+ ++P E EE A + ++D+ Q D + V+P
Sbjct: 8 EVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPT 53
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
V L AR+ L+ + E ++++D+ L +VD++ V+P
Sbjct: 10 VLHLENLARLELSEDQRESLMKDFQEILDYVELLNEVDVEGVEP 53
>pdb|2BNG|A Chain A, Structure Of An M.Tuberculosis Leh-Like Epoxide Hydrolase
pdb|2BNG|B Chain B, Structure Of An M.Tuberculosis Leh-Like Epoxide Hydrolase
pdb|2BNG|C Chain C, Structure Of An M.Tuberculosis Leh-Like Epoxide Hydrolase
Length = 149
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 70 ARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPAL 108
A ++ T E E IR V + LQ+ D D+VD AL
Sbjct: 2 AELTETSPETPETTEAIRAVEAFLNALQNEDFDTVDAAL 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,253,331
Number of Sequences: 62578
Number of extensions: 92699
Number of successful extensions: 212
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 11
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)