BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032247
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 2   ESHMGQGYKFQPSDELIVSLLKEKRLDPHFLYGPIKDIGHICNLEPGDLATESETDSEDR 61
           E ++  G++F P+D+ +V     ++     L  PI     +   +P DL   +   + + 
Sbjct: 12  ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE- 70

Query: 62  ACYFFYEPR-YKYRNSNRVHRRAEAGHWKITSEDSQIEASNGLIGTKKFLTFYRRSPGSK 120
             ++F+ PR  KY N +R +R A  G+WK T  D  +      +G KK L FY      K
Sbjct: 71  --WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFY----AGK 124

Query: 121 VP--VKTDWVMHEYHV 134
            P  VKTDW+MHEY +
Sbjct: 125 APRGVKTDWIMHEYRL 140


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 12/131 (9%)

Query: 8   GYKFQPSDE-LIVSLLKEKRLDPHFLYGPIKDIGHICNLEPGDLATESETDSEDRACYFF 66
           G++F P+DE L+V  L  K     F    I +I  +   +P  L  ++    ++   ++F
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE---WYF 75

Query: 67  YEPR-YKYRNSNRVHRRAEAGHWKITSEDSQIEASNGLIGTKKFLTFYRRSPGSKVP--V 123
           + PR  KY N +R +R A +G+WK T  D  I      +G KK L FY      K P   
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI----GKAPKGT 131

Query: 124 KTDWVMHEYHV 134
           KT+W+MHEY +
Sbjct: 132 KTNWIMHEYRL 142


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 12/131 (9%)

Query: 8   GYKFQPSDE-LIVSLLKEKRLDPHFLYGPIKDIGHICNLEPGDLATESETDSEDRACYFF 66
           G++F P+DE L+V  L  K     F    I +I  +   +P  L  ++    ++   ++F
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE---WYF 78

Query: 67  YEPR-YKYRNSNRVHRRAEAGHWKITSEDSQIEASNGLIGTKKFLTFYRRSPGSKVP--V 123
           + PR  KY N +R +R A +G+WK T  D  I      +G KK L FY      K P   
Sbjct: 79  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI----GKAPKGT 134

Query: 124 KTDWVMHEYHV 134
           KT+W+MHEY +
Sbjct: 135 KTNWIMHEYRL 145


>pdb|3P7I|A Chain A, Crystal Structure Of Escherichia Coli Phnd In Complex With
           2- Aminoethyl Phosphonate
          Length = 321

 Score = 25.8 bits (55), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 86  GHWK--ITSEDSQIEASNGLIGTKKFLTFYRRSPGS 119
           G+W   I ++DS I   N L+  +K LTF    P S
Sbjct: 101 GYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNS 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,784,182
Number of Sequences: 62578
Number of extensions: 183796
Number of successful extensions: 356
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 7
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)