Query 032247
Match_columns 144
No_of_seqs 115 out of 833
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 18:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.2E-55 1.1E-59 324.1 12.1 138 2-144 12-164 (174)
2 1ut7_A No apical meristem prot 100.0 7.2E-55 2.5E-59 321.9 12.7 138 2-144 14-161 (171)
3 3nr5_A MAF1, repressor of RNA 32.6 16 0.00055 26.0 1.2 14 35-49 118-131 (164)
4 3vdj_A Circumsporozoite (CS) p 30.1 27 0.00093 21.7 1.8 17 9-25 2-18 (77)
5 2oh5_A Polyhedrin, C-polyhedri 26.0 50 0.0017 23.6 2.9 28 85-112 140-168 (248)
6 1ldd_A APC2WHB, anaphase promo 22.1 40 0.0014 20.7 1.5 27 5-31 36-63 (74)
7 3pp4_P B-lymphocyte antigen CD 16.9 53 0.0018 15.8 1.0 12 41-52 1-12 (25)
8 1cmb_A Met APO-repressor; DNA- 16.8 1.6E+02 0.0055 18.7 3.5 36 13-54 51-88 (104)
9 3fyr_A Sporulation inhibitor S 16.1 94 0.0032 17.4 2.1 18 13-30 6-24 (48)
10 2cs7_A Pneumococcal histidine 14.1 32 0.0011 20.0 -0.3 7 45-51 12-18 (55)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.2e-55 Score=324.13 Aligned_cols=138 Identities=32% Similarity=0.598 Sum_probs=124.3
Q ss_pred CCCCCCCceEcCCHH-HHHHHHhhhhCCCCCCCCCeeccCCCCCCCCCCccccccCCCCCCeEEEEecccccccCCCccc
Q 032247 2 ESHMGQGYKFQPSDE-LIVSLLKEKRLDPHFLYGPIKDIGHICNLEPGDLATESETDSEDRACYFFYEPRYKYRNSNRVH 80 (144)
Q Consensus 2 ~~~lp~G~rF~Ptde-Li~~YL~~k~~g~~l~~~~I~~~~Dvy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~g~r~~ 80 (144)
++.|||||||+|||| ||.+||++|+.|.+++..+|+++ |||.+|||+||+.... ++.+||||+++.+|+++|.|.+
T Consensus 12 ~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~ev-Dvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp TTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEEC-CGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSC
T ss_pred ccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeec-ccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCce
Confidence 468999999999999 99999999999999999999999 9999999999998763 5689999999999999999999
Q ss_pred ccccCceeEeecCCceEeeCCcEEEEEEEEEEEecCCCCCCCcCCCeEEEEEEeCCC--------------CCeeecC
Q 032247 81 RRAEAGHWKITSEDSQIEASNGLIGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDD--------------PSYEVCA 144 (144)
Q Consensus 81 r~~~~G~W~~~g~~~~i~~~g~~vG~k~~l~f~~~~~~~~~~~~t~W~M~EY~l~~~--------------~~~vlC~ 144 (144)
|++++|+||++|++++|.++|.+||+|++|+||.++.+++ .+|+|+||||+|.++ +++|||+
T Consensus 89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g--~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCr 164 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG--VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCR 164 (174)
T ss_dssp EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSC--EEEEEEEEEEEECSCC-----------CCSSEEEEE
T ss_pred eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCC--CcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEE
Confidence 9999999999999999998899999999999999999888 999999999999864 2599996
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=7.2e-55 Score=321.87 Aligned_cols=138 Identities=31% Similarity=0.568 Sum_probs=122.9
Q ss_pred CCCCCCCceEcCCHH-HHHHHHhhhhCCCCCCCCCeeccCCCCCCCCCCccccccCCCCCCeEEEEecccccccCCCccc
Q 032247 2 ESHMGQGYKFQPSDE-LIVSLLKEKRLDPHFLYGPIKDIGHICNLEPGDLATESETDSEDRACYFFYEPRYKYRNSNRVH 80 (144)
Q Consensus 2 ~~~lp~G~rF~Ptde-Li~~YL~~k~~g~~l~~~~I~~~~Dvy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~g~r~~ 80 (144)
++.|||||||+|||| ||.+||++|+.|.+++..+|+++ |||.+|||+||+.... ++.+||||+++.+++++|.|.+
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~-Diy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CC
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeec-ccccCChhHhhchhhc--CCccEEEEeccccccCCCCccc
Confidence 467999999999999 99999999999999999999999 9999999999998653 5789999999999999999999
Q ss_pred ccccCceeEeecCCceEeeCCcEEEEEEEEEEEecCCCCCCCcCCCeEEEEEEeCCC---------CCeeecC
Q 032247 81 RRAEAGHWKITSEDSQIEASNGLIGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDD---------PSYEVCA 144 (144)
Q Consensus 81 r~~~~G~W~~~g~~~~i~~~g~~vG~k~~l~f~~~~~~~~~~~~t~W~M~EY~l~~~---------~~~vlC~ 144 (144)
|++++|+||++|++++|.+++.+||+|++|+||.++.+++ .+|+|+||||+|.+. .++|||+
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g--~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCr 161 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG--TKTNWIMHEYRLIEPSRRNGSTKLDDWVLCR 161 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSC--EEEEEEEEEEEECCCC--------CCEEEEE
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCC--CcCCeEEEEEEcCCCccccCcccCCCEEEEE
Confidence 9999999999999999999899999999999999999888 999999999999865 3699996
No 3
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=32.57 E-value=16 Score=25.98 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=11.3
Q ss_pred CeeccCCCCCCCCCC
Q 032247 35 PIKDIGHICNLEPGD 49 (144)
Q Consensus 35 ~I~~~~Dvy~~~P~~ 49 (144)
-+.++ |||+++|..
T Consensus 118 ~l~dC-~IYsY~Pd~ 131 (164)
T 3nr5_A 118 CLAEC-DIYSYNPDL 131 (164)
T ss_dssp CGGGC-EEEEECCCG
T ss_pred CccCC-eEEEEcCCC
Confidence 36678 999999984
No 4
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=30.06 E-value=27 Score=21.67 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=13.4
Q ss_pred ceEcCCHHHHHHHHhhh
Q 032247 9 YKFQPSDELIVSLLKEK 25 (144)
Q Consensus 9 ~rF~PtdeLi~~YL~~k 25 (144)
+.|-|+++.|..||.+-
T Consensus 2 ~~~~p~~~~i~~~l~ki 18 (77)
T 3vdj_A 2 VEFEPSDKHIKEYLNKI 18 (77)
T ss_dssp CCCSCCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 35889999888888654
No 5
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=25.98 E-value=50 Score=23.64 Aligned_cols=28 Identities=14% Similarity=0.480 Sum_probs=22.5
Q ss_pred CceeEeecCC-ceEeeCCcEEEEEEEEEE
Q 032247 85 AGHWKITSED-SQIEASNGLIGTKKFLTF 112 (144)
Q Consensus 85 ~G~W~~~g~~-~~i~~~g~~vG~k~~l~f 112 (144)
.--|.++|-. +.|..+|+++|+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 3459999876 677788999999998875
No 6
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=22.14 E-value=40 Score=20.65 Aligned_cols=27 Identities=4% Similarity=0.127 Sum_probs=21.3
Q ss_pred CCCCceEcC-CHHHHHHHHhhhhCCCCC
Q 032247 5 MGQGYKFQP-SDELIVSLLKEKRLDPHF 31 (144)
Q Consensus 5 lp~G~rF~P-tdeLi~~YL~~k~~g~~l 31 (144)
.|.|+.|+. |++.+..||..++...-+
T Consensus 36 ~~~~~~~~~it~~eL~~fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEGYLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhCCeE
Confidence 477899998 888666689999987654
No 7
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=16.93 E-value=53 Score=15.83 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=7.5
Q ss_pred CCCCCCCCCccc
Q 032247 41 HICNLEPGDLAT 52 (144)
Q Consensus 41 Dvy~~~P~~L~~ 52 (144)
|||.++|..-..
T Consensus 1 nIynCE~a~pse 12 (25)
T 3pp4_P 1 NIYNCEPANPSE 12 (26)
T ss_dssp -CCCCSCSSGGG
T ss_pred CccccccCCccc
Confidence 688888855433
No 8
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=16.77 E-value=1.6e+02 Score=18.72 Aligned_cols=36 Identities=6% Similarity=0.090 Sum_probs=24.3
Q ss_pred CCHH--HHHHHHhhhhCCCCCCCCCeeccCCCCCCCCCCccccc
Q 032247 13 PSDE--LIVSLLKEKRLDPHFLYGPIKDIGHICNLEPGDLATES 54 (144)
Q Consensus 13 Ptde--Li~~YL~~k~~g~~l~~~~I~~~~Dvy~~~P~~L~~~~ 54 (144)
-|.. |...|| .-..|+|||.+ . |+-...|.++|...
T Consensus 51 ATNSELLCEAFL-HA~TGQPLP~D----~-Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 51 ATNSELLCEAFL-HAFTGQPLPDD----A-DLRKERSDEIPEAA 88 (104)
T ss_dssp CSHHHHHHHHHH-HHHHCCCCCCG----G-GGBTTSCSCSCHHH
T ss_pred cccHHHHHHHHH-HHhcCCCCCCc----h-hhhhcCCccchHHH
Confidence 3444 444454 45679999873 4 88888898888654
No 9
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=16.15 E-value=94 Score=17.38 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=13.9
Q ss_pred CCHH-HHHHHHhhhhCCCC
Q 032247 13 PSDE-LIVSLLKEKRLDPH 30 (144)
Q Consensus 13 Ptde-Li~~YL~~k~~g~~ 30 (144)
=||+ ||..|.+.+-.+..
T Consensus 6 LSDe~LiesY~~A~el~L~ 24 (48)
T 3fyr_A 6 LSDELLIESYFKATEMNLN 24 (48)
T ss_dssp SCHHHHHHHHHHHHHTTCC
T ss_pred hcHHHHHHHHHHHHHhCCC
Confidence 4799 99999887766543
No 10
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=14.13 E-value=32 Score=19.95 Aligned_cols=7 Identities=14% Similarity=0.491 Sum_probs=3.4
Q ss_pred CCCCCcc
Q 032247 45 LEPGDLA 51 (144)
Q Consensus 45 ~~P~~L~ 51 (144)
++|.++.
T Consensus 12 F~p~dIv 18 (55)
T 2cs7_A 12 FNASDII 18 (55)
T ss_dssp CCGGGCC
T ss_pred ECHHHhe
Confidence 4455553
Done!