Query 032248
Match_columns 144
No_of_seqs 134 out of 1077
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02865 galactokinase 100.0 9.3E-35 2E-39 249.6 14.6 132 2-143 16-148 (423)
2 COG0153 GalK Galactokinase [Ca 100.0 1.5E-34 3.3E-39 244.1 12.6 119 3-143 11-132 (390)
3 PTZ00290 galactokinase; Provis 100.0 1.4E-30 3E-35 226.2 13.2 121 2-143 19-151 (468)
4 PRK05322 galactokinase; Provis 100.0 2E-28 4.3E-33 208.1 14.2 120 2-142 7-128 (387)
5 PLN02521 galactokinase 100.0 3.6E-28 7.9E-33 212.5 14.1 123 2-143 36-166 (497)
6 PRK05101 galactokinase; Provis 99.9 2.9E-27 6.4E-32 200.5 14.3 121 2-143 8-129 (382)
7 TIGR00131 gal_kin galactokinas 99.9 4E-27 8.7E-32 199.4 14.3 121 2-142 5-126 (386)
8 PRK00555 galactokinase; Provis 99.9 1.4E-26 3E-31 195.4 13.6 105 17-142 3-107 (363)
9 PF10509 GalKase_gal_bdg: Gala 99.9 4.8E-27 1E-31 148.6 5.6 52 2-55 1-52 (52)
10 KOG0631 Galactokinase [Carbohy 99.9 3E-25 6.5E-30 191.2 11.9 123 3-143 28-159 (489)
11 PRK03817 galactokinase; Provis 99.8 2.2E-20 4.8E-25 156.3 12.9 102 18-143 2-103 (351)
12 PRK13412 fkp bifunctional fuco 99.8 2E-19 4.3E-24 166.7 11.5 112 13-142 606-742 (974)
13 TIGR00549 mevalon_kin mevalona 99.8 1.9E-19 4.1E-24 144.8 7.6 94 21-142 1-94 (273)
14 TIGR01220 Pmev_kin_Gr_pos phos 99.7 8.5E-16 1.8E-20 129.6 12.1 109 18-142 2-120 (358)
15 PRK03926 mevalonate kinase; Pr 99.5 8.7E-14 1.9E-18 113.8 10.3 91 17-143 2-92 (302)
16 PLN02677 mevalonate kinase 99.4 1.6E-12 3.4E-17 111.2 12.1 61 17-77 3-67 (387)
17 TIGR00154 ispE 4-diphosphocyti 99.3 7E-12 1.5E-16 103.2 10.3 95 17-144 2-104 (293)
18 PRK02534 4-diphosphocytidyl-2- 99.1 6.2E-10 1.4E-14 92.0 11.1 94 17-143 4-103 (312)
19 PRK00128 ipk 4-diphosphocytidy 99.1 1.7E-09 3.7E-14 88.1 10.5 93 17-142 3-100 (286)
20 COG1577 ERG12 Mevalonate kinas 98.2 8E-06 1.7E-10 68.3 8.8 97 18-142 2-99 (307)
21 KOG1511 Mevalonate kinase MVK/ 98.2 2E-05 4.3E-10 67.1 10.1 61 17-77 5-65 (397)
22 PRK00343 ipk 4-diphosphocytidy 98.0 6.5E-05 1.4E-09 61.4 10.8 92 18-144 8-105 (271)
23 PTZ00298 mevalonate kinase; Pr 97.7 7.2E-05 1.6E-09 62.4 5.8 97 18-143 12-111 (328)
24 COG2605 Predicted kinase relat 97.6 0.00024 5.1E-09 59.4 7.0 94 18-142 3-105 (333)
25 PRK14611 4-diphosphocytidyl-2- 95.9 0.056 1.2E-06 44.0 8.3 90 18-143 3-97 (275)
26 PRK14608 4-diphosphocytidyl-2- 95.3 0.26 5.6E-06 40.5 10.4 41 104-144 68-108 (290)
27 PRK14615 4-diphosphocytidyl-2- 94.2 0.86 1.9E-05 37.6 10.8 93 17-144 7-106 (296)
28 PRK14612 4-diphosphocytidyl-2- 93.9 0.86 1.9E-05 37.0 10.0 92 18-144 4-101 (276)
29 TIGR01920 Shik_kin_archae shik 93.4 0.56 1.2E-05 38.0 8.2 65 40-143 17-81 (261)
30 PRK14609 4-diphosphocytidyl-2- 93.3 0.98 2.1E-05 36.8 9.4 40 103-144 61-100 (269)
31 PRK14610 4-diphosphocytidyl-2- 92.7 2 4.2E-05 35.3 10.5 38 106-144 65-102 (283)
32 KOG4644 L-fucose kinase [Carbo 92.3 0.28 6E-06 44.5 5.2 36 10-46 566-608 (948)
33 PRK14616 4-diphosphocytidyl-2- 92.1 1.6 3.4E-05 35.7 9.3 90 18-143 5-100 (287)
34 PRK01123 shikimate kinase; Pro 90.0 3.6 7.8E-05 33.5 9.4 86 19-142 5-91 (282)
35 PLN02451 homoserine kinase 90.0 1 2.2E-05 38.6 6.3 92 17-143 54-151 (370)
36 PRK05905 hypothetical protein; 89.5 5.9 0.00013 32.4 10.2 38 106-144 66-104 (258)
37 PRK14613 4-diphosphocytidyl-2- 86.3 12 0.00026 30.9 10.4 38 106-144 74-111 (297)
38 PRK04181 4-diphosphocytidyl-2- 85.4 9.2 0.0002 31.1 9.1 39 106-144 61-104 (257)
39 PRK03188 4-diphosphocytidyl-2- 84.4 7.8 0.00017 31.6 8.3 92 19-143 3-100 (300)
40 PRK00650 4-diphosphocytidyl-2- 82.0 19 0.00041 30.0 9.7 38 106-144 61-98 (288)
41 PTZ00299 homoserine kinase; Pr 81.9 6.5 0.00014 33.3 7.1 90 17-142 8-98 (336)
42 TIGR01219 Pmev_kin_ERG8 phosph 80.9 22 0.00049 31.5 10.3 57 19-75 2-66 (454)
43 COG1947 IspE 4-diphosphocytidy 80.3 30 0.00066 28.9 10.3 37 107-144 67-103 (289)
44 TIGR00191 thrB homoserine kina 76.4 13 0.00028 30.5 7.1 37 106-143 60-97 (302)
45 PRK01212 homoserine kinase; Pr 76.1 18 0.00038 29.4 7.8 90 17-143 4-98 (301)
46 COG0083 ThrB Homoserine kinase 69.0 27 0.00058 29.4 7.3 88 18-141 5-92 (299)
47 TIGR00144 beta_RFAP_syn beta-R 68.1 68 0.0015 26.8 9.6 90 18-142 2-98 (324)
48 PRK14614 4-diphosphocytidyl-2- 66.6 69 0.0015 26.0 9.7 36 106-143 66-102 (280)
49 COG1685 Archaeal shikimate kin 64.7 59 0.0013 27.1 8.4 83 18-142 4-86 (278)
50 TIGR01240 mevDPdecarb diphosph 49.6 29 0.00063 28.9 4.3 37 106-143 66-102 (305)
51 COG1228 HutI Imidazolonepropio 46.7 17 0.00037 31.6 2.5 41 17-57 30-80 (406)
52 KOG0180 20S proteasome, regula 46.4 35 0.00075 26.9 3.9 36 33-68 5-40 (204)
53 PF05582 Peptidase_U57: YabG p 34.3 19 0.00041 30.2 0.9 21 4-27 212-232 (287)
54 COG3890 ERG8 Phosphomevalonate 28.8 64 0.0014 27.4 3.1 31 19-52 6-40 (337)
55 TIGR02855 spore_yabG sporulati 28.1 27 0.00059 29.2 0.9 21 4-27 211-231 (283)
56 PF00837 T4_deiodinase: Iodoth 27.9 64 0.0014 26.3 2.9 29 1-30 190-218 (237)
57 PF10115 HlyU: Transcriptional 23.4 2.6E+02 0.0057 19.4 5.2 34 3-45 2-35 (91)
58 COG2001 Uncharacterized protei 21.6 83 0.0018 23.8 2.3 42 3-53 69-111 (146)
59 cd03759 proteasome_beta_type_3 20.3 2.2E+02 0.0048 21.5 4.6 29 34-62 1-29 (195)
No 1
>PLN02865 galactokinase
Probab=100.00 E-value=9.3e-35 Score=249.65 Aligned_cols=132 Identities=66% Similarity=0.985 Sum_probs=108.3
Q ss_pred hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccc
Q 032248 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQP 81 (144)
Q Consensus 2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~ 81 (144)
.+.|++.||.+|+...+++|||||||||||||||||+|||||||++|+++++|++|++++|.|.++++..+|++++...+
T Consensus 16 ~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~v~s~~~~~~~~~~~~~~~~~ 95 (423)
T PLN02865 16 RERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLRSAQFEGEVRFRVDEIQHP 95 (423)
T ss_pred HHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCceEEeccccccc
Confidence 57899999999963247999999999999999999999999999999999999999999999999875567777643111
Q ss_pred cccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccC-CCCCCccC
Q 032248 82 RNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFM-NHLFALSY 143 (144)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~-p~~~~~~~ 143 (144)
.. . ..-...+..+|+||++|+++.|++.|....+|||++|+|+| |.++|||-
T Consensus 96 ~~-----~-----~~~~~~~~~~W~~Yv~gv~~~l~~~g~~~~~G~~~~v~g~vpP~gsGLsS 148 (423)
T PLN02865 96 IA-----N-----VSSDSKEESNWGDYARGAVYALQSRGHALSQGITGYISGSEGLDSSGLSS 148 (423)
T ss_pred cc-----c-----ccccCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEEECCCCCCCCcccH
Confidence 00 0 00011355789999999999999988876579999999999 68999983
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=244.11 Aligned_cols=119 Identities=27% Similarity=0.348 Sum_probs=103.7
Q ss_pred hHhhhhhCC-CCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC-ceEEe-cCccc
Q 032248 3 NKVSEMSGR-DAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFS-IDEIQ 79 (144)
Q Consensus 3 ~~F~~~fG~-~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~-~~~~~-l~~l~ 79 (144)
..|.+.|+. +|+ .+++|||||||||||||||||+|||||||.+|++++++|+|.+++++|.+++. ...+. .+++.
T Consensus 11 ~~f~~~f~~~~~~--~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d~~v~l~s~n~~~~~~~~~~~~d~~ 88 (390)
T COG0153 11 ALFAEHFGYVEPT--VTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSANFGNAGDIFFLLLDIA 88 (390)
T ss_pred HHHHHHhcccCcc--eEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccCceEEEEeCCCccccceeecchhhc
Confidence 568888886 776 68999999999999999999999999999999999999999999999999983 33333 34432
Q ss_pred cccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
. .+..+|+||++|+++.|+.+|+..+ |+|++|.||||.++|||-
T Consensus 89 ~-------------------~~~~~W~nYvkgvi~~l~~~g~~~~-G~~i~i~gnIP~GaGLSS 132 (390)
T COG0153 89 K-------------------EKIDDWANYVKGVIKALQKRGYAFT-GLDIVISGNIPIGAGLSS 132 (390)
T ss_pred c-------------------cccchhhhhHHHHHHHHHhcCCCcC-CeeEEEecCCCCCCCcCc
Confidence 1 2458999999999999999999986 999999999999999983
No 3
>PTZ00290 galactokinase; Provisional
Probab=99.97 E-value=1.4e-30 Score=226.20 Aligned_cols=121 Identities=19% Similarity=0.260 Sum_probs=96.5
Q ss_pred hhHhhhhhCCCCce----eEEEEccceeeccccccccCCceEEeeeecceEEEEEEec---CCCeEEEEeCCCCCceEEe
Q 032248 2 RNKVSEMSGRDAEV----VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS---GDTEVVLRSGQFDGEVRFS 74 (144)
Q Consensus 2 ~~~F~~~fG~~p~~----~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~---~d~~v~i~s~~~~~~~~~~ 74 (144)
++.|++.||.+|+. .++++|||||||||||||||||+|||||||++|+++++++ +++++++.+.. .+ +|+
T Consensus 19 ~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~~~~i~~~~~~-~~--~~~ 95 (468)
T PTZ00290 19 KPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFCDHKLRFATET-DE--HFV 95 (468)
T ss_pred HHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCCCCeEEEEECC-Cc--eee
Confidence 57899999999951 1578999999999999999999999999999999999876 56789985544 32 455
Q ss_pred cCccccccccccccccccccccccccCcCChhhHHHHHHHH-HHHcCCCC----CCcEEEEEEccCCCCCCccC
Q 032248 75 IDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYA-LQSRGNNL----TQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 75 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~-l~~~g~~~----~~G~d~~I~g~~p~~~~~~~ 143 (144)
++.... .....+|+||++|+++. +++.|... ..|||++|.|+||-++|||-
T Consensus 96 ~~~~~~------------------~~~~~~W~nYv~gv~~~~l~~~g~~~~~~~~~G~d~~i~gdVP~GaGLSS 151 (468)
T PTZ00290 96 LDHLGG------------------AKHNKAWTTFVRGAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSA 151 (468)
T ss_pred cCcccc------------------cCCcccHHHHHHHHHHHHHHHhCCCcccCCCCCeEEEEeCCCCCCCCcch
Confidence 543211 12457899999999986 66577642 25999999999999999983
No 4
>PRK05322 galactokinase; Provisional
Probab=99.96 E-value=2e-28 Score=208.07 Aligned_cols=120 Identities=31% Similarity=0.443 Sum_probs=104.4
Q ss_pred hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC--ceEEecCccc
Q 032248 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG--EVRFSIDEIQ 79 (144)
Q Consensus 2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~--~~~~~l~~l~ 79 (144)
.+.|++.||.+|+ .+++|||||||||||+||+||+|||+|||+++++++++++|+++++.|.+++. ..+|+++++.
T Consensus 7 ~~~f~~~fg~~p~--~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~~ 84 (387)
T PRK05322 7 KKKFAEVFGEEAE--DVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLYSANFEDLGIIEFDLDDLS 84 (387)
T ss_pred HHHHHHHhCCCCc--eEEEcCceeEecccceeecCceeeeeeccceEEEEEEECCCCEEEEEECCCCCCceEEEeccccC
Confidence 4679999999998 68999999999999999999999999999999999999999999999988863 3556655432
Q ss_pred cccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
. .....|.+|++|++..|++.+.....||++.|.|+||-++|||
T Consensus 85 ~-------------------~~~~~w~~y~~gvi~~l~~~~~~~~~g~~i~i~s~iP~gsGLg 128 (387)
T PRK05322 85 F-------------------DKEDDWANYPKGVLKFLQEAGYKIDHGFDILIYGNIPNGAGLS 128 (387)
T ss_pred C-------------------CCccchHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCcc
Confidence 1 2456799999999999998876554699999999999999997
No 5
>PLN02521 galactokinase
Probab=99.95 E-value=3.6e-28 Score=212.49 Aligned_cols=123 Identities=22% Similarity=0.275 Sum_probs=101.9
Q ss_pred hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCC-CeEEEEeCCCCC-ceEEecCccc
Q 032248 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD-TEVVLRSGQFDG-EVRFSIDEIQ 79 (144)
Q Consensus 2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d-~~v~i~s~~~~~-~~~~~l~~l~ 79 (144)
.+.|++.||.+|+ ++++|||||||||||+||+||+||||||+++++++++++++ +.+++.+.+.+. ...|+++...
T Consensus 36 ~~~F~~~fg~~p~--~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~ 113 (497)
T PLN02521 36 KAAFVEVYGAKPD--LFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLRIANVNDKYTTCTFPADPDQ 113 (497)
T ss_pred HHHHHHHHCCCCC--EEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcCCCCEEEEEECCCCCCceeeecCccc
Confidence 4679999999998 78999999999999999999999999999999999999987 889999877542 3455554321
Q ss_pred cccccccccccccccccccccCcCChhhHH----HHHHHHHHHcCCCC--CCcEEEEEEccCCCCCCccC
Q 032248 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYA----RGALYALQSRGNNL--TQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv----~Gv~~~l~~~g~~~--~~G~d~~I~g~~p~~~~~~~ 143 (144)
.. ......|+||+ +|++..+.+.+... ..||++.|.|+||.++|||-
T Consensus 114 ~~-----------------~~~~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~gsGLgS 166 (497)
T PLN02521 114 EV-----------------DLANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSS 166 (497)
T ss_pred cc-----------------ccccccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecCCCCCCCcch
Confidence 10 12456799999 99999999877643 35999999999999999983
No 6
>PRK05101 galactokinase; Provisional
Probab=99.95 E-value=2.9e-27 Score=200.54 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=103.7
Q ss_pred hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC-ceEEecCcccc
Q 032248 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQQ 80 (144)
Q Consensus 2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~-~~~~~l~~l~~ 80 (144)
.+.|++.||.+|+ ++++|||||||||||+||+||.|||+|||+++++++++++++.+++.+.+++. ...++++....
T Consensus 8 ~~~f~~~fg~~p~--~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~~~i~v~s~~~~~~~~~~~~~~~~~ 85 (382)
T PRK05101 8 QSLFAQQFGYPPT--HTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVIAADYDNQQDEFSLDAPIV 85 (382)
T ss_pred HHHHHHHhCCCCC--eEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCCCEEEEEECCCCCCceEEecCcccc
Confidence 4689999999998 68999999999999999999999999999999999999999999999988752 34566654111
Q ss_pred ccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
..+...|.||++++++.|++++... .||++.|.|+||.++|||.
T Consensus 86 ------------------~~~~~~w~~yv~~~~~~l~~~~~~~-~g~~i~i~~~iP~gaGLgS 129 (382)
T PRK05101 86 ------------------PHPEQQWANYVRGVVKHLQERNPDF-GGADLVISGNVPQGAGLSS 129 (382)
T ss_pred ------------------cCCCCchHHHHHHHHHHHHHhCCCC-CCeEEEEeCCCCCCCCcch
Confidence 1256789999999999998876554 5999999999999999974
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.95 E-value=4e-27 Score=199.36 Aligned_cols=121 Identities=23% Similarity=0.268 Sum_probs=103.0
Q ss_pred hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC-ceEEecCcccc
Q 032248 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQQ 80 (144)
Q Consensus 2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~-~~~~~l~~l~~ 80 (144)
.+.|++.||.+|+ ++++|||||||||||+||+||.|||+|||+++++++++++++.+++.+.+++. ..+++++.. .
T Consensus 5 ~~~f~~~fg~~p~--~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~ 81 (386)
T TIGR00131 5 QKIFASAFGAKPD--FTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRIYLANADNKFAERSLDLP-L 81 (386)
T ss_pred HHHHHHHHCCCCC--EEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCCCeEEEEECCCCCcceEEECCCC-C
Confidence 5789999999998 78999999999999999999999999999999999999999999999888753 334444421 1
Q ss_pred ccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248 81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
. ......|.+|+++++..+++.+.....||++.|.|+||.++|||
T Consensus 82 ~-----------------~~~~~~w~~y~~~~~~~~~~~~~~~~~g~~i~i~s~iP~gsGLg 126 (386)
T TIGR00131 82 D-----------------GSEVSDWANYFKGVLHVAQERFNSFPLGADIVCSGNVPTGSGLS 126 (386)
T ss_pred C-----------------CCCCCCcHhHHHHHHHHHHHhcCCCCCceEEEEECCCCCCCCcc
Confidence 1 12347899999999999998776555699999999999999997
No 8
>PRK00555 galactokinase; Provisional
Probab=99.94 E-value=1.4e-26 Score=195.44 Aligned_cols=105 Identities=23% Similarity=0.368 Sum_probs=92.5
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (144)
++++|||||||||||+|||||+|||+|||++++++++|++|+++++.+.+++...+++++.. +
T Consensus 3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~--~--------------- 65 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHTDAITASSDRADGSARIPLDTT--P--------------- 65 (363)
T ss_pred EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCceEEecCCC--C---------------
Confidence 47899999999999999999999999999999999999999999999988876666665532 1
Q ss_pred ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248 97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
.....|++|++|++..|++.|... .|+++.|.|+||.++|||
T Consensus 66 ---~~~~~w~~y~~gv~~~l~~~g~~~-~g~~i~i~s~iP~g~GLg 107 (363)
T PRK00555 66 ---GQVTGWAAYAAGVIWALRGAGHPV-PGGAMSITSDVEIGSGLS 107 (363)
T ss_pred ---CCCcchHHHHHHHHHHHHHcCCCC-CCeEEEEecCCCCCCCcc
Confidence 134689999999999999988755 599999999999999997
No 9
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=99.94 E-value=4.8e-27 Score=148.57 Aligned_cols=52 Identities=27% Similarity=0.461 Sum_probs=44.3
Q ss_pred hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEec
Q 032248 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS 55 (144)
Q Consensus 2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~ 55 (144)
++.|++.||.+|+ .+++|||||||||||||||||.||||||+++|++++++|
T Consensus 1 ~~~F~~~fg~~p~--~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 1 KEEFEEFFGEEPE--VVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR 52 (52)
T ss_dssp -HHHHHHHSS--S--EEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred ChhHHHHhCCCCC--EEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence 4789999999998 689999999999999999999999999999999999986
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3e-25 Score=191.17 Aligned_cols=123 Identities=24% Similarity=0.258 Sum_probs=96.6
Q ss_pred hHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC---ceEEecCccc
Q 032248 3 NKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG---EVRFSIDEIQ 79 (144)
Q Consensus 3 ~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~---~~~~~l~~l~ 79 (144)
..|.+.||.+|+ ++++||||||||||||||+|+.|||||||.++++++++++|..++|...||+. ..++.++..
T Consensus 28 ~~~~~~~~~kp~--~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~~d~~~sl~~tN~~~~f~~~~~~~p~~- 104 (489)
T KOG0631|consen 28 GAFQAAYGAKPV--FVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGIVSLRLTNFNPDFIYFKYPLPSI- 104 (489)
T ss_pred HHHHHhhCCCce--EEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEcCCCceeEEEecCCCccceeeccCCch-
Confidence 478899999998 79999999999999999999999999999999999999999997777777763 234444431
Q ss_pred cccccccccccccccccccccCcCChhhHH----HHHHHHHHHcCCCC--CCcEEEEEEccCCCCCCccC
Q 032248 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYA----RGALYALQSRGNNL--TQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv----~Gv~~~l~~~g~~~--~~G~d~~I~g~~p~~~~~~~ 143 (144)
.. ......+.|.||+ +|+...++.++... +.|++++++|++|-+.|||-
T Consensus 105 ~~---------------~I~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsS 159 (489)
T KOG0631|consen 105 VW---------------QIDPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSS 159 (489)
T ss_pred hc---------------ccCCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCCCCCcch
Confidence 01 1124678999999 56655553333222 35999999999999999983
No 11
>PRK03817 galactokinase; Provisional
Probab=99.84 E-value=2.2e-20 Score=156.25 Aligned_cols=102 Identities=25% Similarity=0.379 Sum_probs=87.4
Q ss_pred EEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccccc
Q 032248 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSA 97 (144)
Q Consensus 18 v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 97 (144)
.++|||||||+|||+||+||+||+||||+++++.++++ +.+++.+.+++...+++++++.
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~~~------------------ 61 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKS--EKFIFYSENFNEEKTFELDKLE------------------ 61 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeC--CeEEEEECCCCCcEEEeCCccC------------------
Confidence 47899999999999999999999999999999999886 4688888888765667766431
Q ss_pred cccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 98 KIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 98 ~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
...+|.+|+++++..+.+.+... .||++.|.++||.+.||+-
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~iP~~~GLgS 103 (351)
T PRK03817 62 ---KLNSWADYIKGVIWVLEKRGYEV-GGVKGKVSSNLPIGAGLSS 103 (351)
T ss_pred ---CCCchHHHHHHHHHHHHHcCCCC-CCeEEEEeCCCCCCCCcCc
Confidence 35689999999999999877654 6999999999999999963
No 12
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.80 E-value=2e-19 Score=166.67 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=87.6
Q ss_pred CceeEEEEccceeeccccccc------cCCceEEeeeecce----EEEEEEecCCCeEEEEeCCCCCceEEec-Cccccc
Q 032248 13 AEVVRVVVSPYRICPLGAHID------HQGGTVSAMTINKG----ILLGFVPSGDTEVVLRSGQFDGEVRFSI-DEIQQP 81 (144)
Q Consensus 13 p~~~~v~~APGRVnLIGEH~D------Y~gG~VLp~AI~~~----~~va~~~~~d~~v~i~s~~~~~~~~~~l-~~l~~~ 81 (144)
++.+.+++||||||||||||| |+||.|||+||++. +++.++++.|.++++.|.+++....++. +++..
T Consensus 606 ~~~~~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d~~~~~~v~~~~~l~~- 684 (974)
T PRK13412 606 SDQIVWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSIDLGAMEVVRTNEELRD- 684 (974)
T ss_pred cCcEEEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECCCCCceEEecchhhcc-
Confidence 344556799999999999999 99999999999997 9999999999999999999875444443 33211
Q ss_pred cccccccccccccccccccCcCChhhHHHHHHH--------------HHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248 82 RNSVKKHHVVHASDSAKIKEECKWGNYARGALY--------------ALQSRGNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~--------------~l~~~g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
.....+|.+|++|++. .|++.....+.||++.|.|+||.++||+
T Consensus 685 -----------------~~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G~G~~I~i~s~IP~GsGLG 742 (974)
T PRK13412 685 -----------------YKKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFGSGIEITLLAAIPAGSGLG 742 (974)
T ss_pred -----------------cccccchHhhhhhhheecccccccccchhHHHHHHHHhcCCCeEEEEecCCCCCCCcc
Confidence 1245789999999985 3333211123599999999999999997
No 13
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.79 E-value=1.9e-19 Score=144.80 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=75.7
Q ss_pred ccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccccccc
Q 032248 21 SPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIK 100 (144)
Q Consensus 21 APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (144)
|||||||||||+||+||+|||+|||+++++++++++++ +++.+..+... .... . .
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~~~~-~~i~~~~~~~~----~~~~--~------------------~ 55 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSDG-SFIESDLGRGS----LDDA--P------------------Q 55 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEcCCC-ceEeccccCCc----HhHh--h------------------H
Confidence 79999999999999999999999999999999998877 66776555311 1111 0 1
Q ss_pred CcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248 101 EECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 101 ~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
....|.+|+++++..+.+.+ ..|+++.|.++||.+.||+
T Consensus 56 ~~~~~~~~v~~~l~~~~~~~---~~~~~i~i~s~iP~g~GLG 94 (273)
T TIGR00549 56 ELDGLVSYIAEALSYFSELN---PPPLEIEIDSEIPPGRGLG 94 (273)
T ss_pred HHHHHHHHHHHHHHHhhccC---CCCEEEEEecCCCCCCCcc
Confidence 34679999999999887532 2369999999999999996
No 14
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.66 E-value=8.5e-16 Score=129.60 Aligned_cols=109 Identities=12% Similarity=0.144 Sum_probs=81.7
Q ss_pred EEEccceeeccccccccC-CceEEeeeecceEEEEEEecCCCeEEEEeCCCCC-ceEEecCccccccccccccccccccc
Q 032248 18 VVVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQQPRNSVKKHHVVHASD 95 (144)
Q Consensus 18 v~~APGRVnLIGEH~DY~-gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (144)
.++|||||+|||||+||+ |.++|++||++++++.++++++..++|.+.++.. ..++..+......
T Consensus 2 ~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~------------- 68 (358)
T TIGR01220 2 VVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDADGAADVIISSDLGPQPVGWRRHDGRLVV------------- 68 (358)
T ss_pred eeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeCCCCceEEEecCCCCCceEEEecCCceee-------------
Confidence 478999999999999999 6679999999999999999998888999888753 3455443210000
Q ss_pred cccccCcCChhhHHHHHHHHHHH----cCCCCCCcEEEEEEccCCCC----CCcc
Q 032248 96 SAKIKEECKWGNYARGALYALQS----RGNNLTQVKMFLCCHFMNHL----FALS 142 (144)
Q Consensus 96 ~~~~~~~~~Wa~Yv~Gv~~~l~~----~g~~~~~G~d~~I~g~~p~~----~~~~ 142 (144)
.......|.+|+++++..+.+ .+... .||++.|.|++|.. .||+
T Consensus 69 --~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~-~g~~~~i~s~ip~~~g~k~GLG 120 (358)
T TIGR01220 69 --RDPDARSALAYVVSAIETVERYAGERNQKL-PALHLSVSSRLDEADGRKYGLG 120 (358)
T ss_pred --cccccccchHHHHHHHHHHHHHHHhcCCCC-CceEEEEecCCCCcCCCCCCcc
Confidence 001235799999999976533 34444 49999999999984 4664
No 15
>PRK03926 mevalonate kinase; Provisional
Probab=99.52 E-value=8.7e-14 Score=113.80 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=72.1
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (144)
..++|||||||+|||.||+||.+|++||++++.+.++++++. +++.+ ...
T Consensus 2 ~~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~~~~-~~i~~-~~~---------------------------- 51 (302)
T PRK03926 2 VLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDDS-IYIES-DYG---------------------------- 51 (302)
T ss_pred eEEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEECCCc-eEEec-ccc----------------------------
Confidence 368999999999999999999999999999999999887543 33321 100
Q ss_pred ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
....|.+|++.++..+.+.. .. .|+++.|.++||...||+.
T Consensus 52 ----~~~~~~~~~~~~~~~~~~~~-~~-~g~~i~i~~~iP~~~GLGS 92 (302)
T PRK03926 52 ----KTGEKHPYVSAAIEKMREEA-DK-DGVTVSITSQIPVGSGLGS 92 (302)
T ss_pred ----cccchhHHHHHHHHHHHHhc-CC-CCeEEEEecCCCCCCCccH
Confidence 01258889999998888753 23 3999999999999999964
No 16
>PLN02677 mevalonate kinase
Probab=99.43 E-value=1.6e-12 Score=111.24 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=46.3
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecC----CCeEEEEeCCCCCceEEecCc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG----DTEVVLRSGQFDGEVRFSIDE 77 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~----d~~v~i~s~~~~~~~~~~l~~ 77 (144)
+.++|||||+|+|||+||+|+.++++||++++++.+++++ .+++++...+.+-..+.++++
T Consensus 3 i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~ 67 (387)
T PLN02677 3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLAR 67 (387)
T ss_pred eEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHh
Confidence 4689999999999999999999999999999999999853 344554444433333444443
No 17
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.35 E-value=7e-12 Score=103.20 Aligned_cols=95 Identities=19% Similarity=0.131 Sum_probs=75.4
Q ss_pred EEEEccceeecccccccc-CCce----EEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDH-QGGT----VSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY-~gG~----VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (144)
++++|||||||++||+|| ++|+ +++++|+++..+.+++++++.+++.+.+++ + +
T Consensus 2 ~~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~~i~~~~~~~~---------~--~---------- 60 (293)
T TIGR00154 2 HVFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDDDIRLLKGDFD---------V--P---------- 60 (293)
T ss_pred ceEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCCcEEEeeCCCC---------C--C----------
Confidence 357999999999999999 8888 999999999999999988777777543211 1 1
Q ss_pred cccccccccCcCChhhHHHHHHHHHHHcCCC---CCCcEEEEEEccCCCCCCccCC
Q 032248 92 HASDSAKIKEECKWGNYARGALYALQSRGNN---LTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~---~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
.+ + ||+..++..|.++... ...|+++.|.++||.+.||..|
T Consensus 61 ---------~~-~--nlv~~a~~~l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGss 104 (293)
T TIGR00154 61 ---------LE-E--NLIYRAAQLLKNFANSKIKSLDGANIEIDKNIPMGAGLGGG 104 (293)
T ss_pred ---------CC-C--cHHHHHHHHHHHHhcccccCCCCeEEEEeccCCCCCCcchh
Confidence 11 2 9999999988875321 2359999999999999999754
No 18
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.13 E-value=6.2e-10 Score=92.00 Aligned_cols=94 Identities=16% Similarity=0.059 Sum_probs=74.0
Q ss_pred EEEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248 17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (144)
Q Consensus 17 ~v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (144)
..++||||||| +|+|.| |+.+.+++++|+++..+.++++++..+++.+... .+ +
T Consensus 4 ~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~~~~~~~~~~~---------~~--~---------- 62 (312)
T PRK02534 4 YTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGDGTIRLHCDHP---------QL--S---------- 62 (312)
T ss_pred EEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCCCcEEEEECCC---------CC--C----------
Confidence 35789999999 899999 9999999999999999999988766666543210 11 1
Q ss_pred cccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248 92 HASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
.+..|++..++..+.++ +... .|+++.|.++||.+.||..
T Consensus 63 -----------~~~~n~~~~~~~~~~~~~~~~~-~~~~i~i~~~IP~~~GLGS 103 (312)
T PRK02534 63 -----------TDDDNLIYRAAQLLRKRFPFAE-GGVDITLEKRIPIGAGLAG 103 (312)
T ss_pred -----------CCchhHHHHHHHHHHHHhCCCC-CCeEEEEecCCCCcCCccH
Confidence 12467898888888775 4332 5899999999999999975
No 19
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.05 E-value=1.7e-09 Score=88.05 Aligned_cols=93 Identities=19% Similarity=0.072 Sum_probs=73.2
Q ss_pred EEEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248 17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (144)
Q Consensus 17 ~v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (144)
+.+.||||||| +|+|.| |+...++++||+++..+.++++++..+++.+... ..
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~~~~~i~~~~~---------~~------------- 60 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKEDGIVVESNNR---------YV------------- 60 (286)
T ss_pred EEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCCCCEEEEeCCC---------CC-------------
Confidence 45789999999 999999 9999999999999999999988766666653210 11
Q ss_pred cccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248 92 HASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
..+|.|++..++..+.++. ....|+++.|.++||...||.
T Consensus 61 ----------~~~~~n~~~~~~~~~~~~~-~~~~~~~i~i~~~iP~~~GLG 100 (286)
T PRK00128 61 ----------PNDERNLAYKAAKLLKERY-NIKQGVSITIDKNIPVAAGLA 100 (286)
T ss_pred ----------CCCCCcHHHHHHHHHHHhc-CCCCCeEEEEEcCCCccccch
Confidence 1246778888888777652 233589999999999999994
No 20
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=98.21 E-value=8e-06 Score=68.32 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=75.0
Q ss_pred EEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccccc
Q 032248 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSA 97 (144)
Q Consensus 18 v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 97 (144)
.++|||.+-|+|||.=-.|.+.+.+||+++.++.++.+++..+.+.+.+++.. .+. .+
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~~~~~i~~~~~~~~---~~~---~~---------------- 59 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIVIESSDLKSS---TLE---RD---------------- 59 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEecCCCcEEEeccCCCCc---ccc---cc----------------
Confidence 46899999999999877799999999999999999999988888888776632 111 10
Q ss_pred cccCcCChhhHHHHHHHHHHHcCC-CCCCcEEEEEEccCCCCCCcc
Q 032248 98 KIKEECKWGNYARGALYALQSRGN-NLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 98 ~~~~~~~Wa~Yv~Gv~~~l~~~g~-~~~~G~d~~I~g~~p~~~~~~ 142 (144)
+. ..|+.-++..+.+.-. ....+|++.|+|.||-++||-
T Consensus 60 ----~~--~~~~~~~v~~~~e~~~~~~~~~~~l~I~S~iP~g~GLG 99 (307)
T COG1577 60 ----ED--EGYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLG 99 (307)
T ss_pred ----cc--chHHHHHHHHHHHHhcccCCCCeEEEEecCCCCCCCcc
Confidence 11 1777777766665322 234699999999999999983
No 21
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=98.16 E-value=2e-05 Score=67.05 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=51.9
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~ 77 (144)
..++|||.|-|+|||.=-.|...|++||+++|++-+.+..++++.+.-.+..-+.++.+++
T Consensus 5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~san~~i~l~l~di~~~~~w~l~~ 65 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQLPDISIEKAWSLAD 65 (397)
T ss_pred eeecCCccEEEeccceeEECCceeEEEeecceeEEEEecCCCeEEEecccCCceEEEEhhh
Confidence 3789999999999999999999999999999999999988888877655555445666654
No 22
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.04 E-value=6.5e-05 Score=61.38 Aligned_cols=92 Identities=17% Similarity=-0.033 Sum_probs=68.2
Q ss_pred EEEccceeecccccc-----c-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248 18 VVVSPYRICPLGAHI-----D-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (144)
Q Consensus 18 v~~APGRVnLIGEH~-----D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (144)
.++||+.|||.+ |+ | |+.-.-+.++|+.+..+.++++++..+++.+.. + .
T Consensus 8 ~~~apaKiNL~L-~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~~~~i~~~~-~--------~-------------- 63 (271)
T PRK00343 8 DWPAPAKLNLFL-HITGRRADGYHELQTLFQFLDWGDTLHFEVRDDGEIRLLTPI-P--------G-------------- 63 (271)
T ss_pred EEeeeeeEEEEe-ecCCcCCCCCCeeeEEEEEcccceEEEEEECCCCcEEEeCCC-C--------C--------------
Confidence 468999999998 65 2 555556888999998988888776555554211 0 0
Q ss_pred cccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248 92 HASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
...|.||+..++..|.++.... .|+++.|.++||.+.||..|
T Consensus 64 ----------~~~~~N~v~~a~~~l~~~~~~~-~~~~i~i~k~IP~gaGLGss 105 (271)
T PRK00343 64 ----------VPEEDNLIVRAARLLQKATGTP-LGADISLDKRLPMGGGLGGG 105 (271)
T ss_pred ----------CCCcccHHHHHHHHHHHHhCCC-CCeEEEEEcCCCCcCCCCcc
Confidence 1246899999999998863333 49999999999999999543
No 23
>PTZ00298 mevalonate kinase; Provisional
Probab=97.71 E-value=7.2e-05 Score=62.42 Aligned_cols=97 Identities=7% Similarity=-0.073 Sum_probs=62.5
Q ss_pred EEEccceeeccccccccCCceEEeeeecceEEEEEEecC-CCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG-DTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (144)
Q Consensus 18 v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~-d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (144)
..+|||+|-|+|||-+=.|...+..+|+++..+.+..++ ++.+.+.... ..+ +
T Consensus 12 ~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~~~~~~~~~~~~~---------~~~--~--------------- 65 (328)
T PTZ00298 12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTKGVPGLQVVDQR---------PAV--P--------------- 65 (328)
T ss_pred CCCcCeeEEEEecceeecCCchhhhecccceEEEEEEccCCCCceecccc---------ccc--c---------------
Confidence 568999999999999999999999999998655555433 2222211100 000 0
Q ss_pred ccccCcCChhhHHHHHHHHHHH-cCCCC-CCcEEEEEEccCCCCCCccC
Q 032248 97 AKIKEECKWGNYARGALYALQS-RGNNL-TQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 97 ~~~~~~~~Wa~Yv~Gv~~~l~~-~g~~~-~~G~d~~I~g~~p~~~~~~~ 143 (144)
....+-.|.+..+...+.+ .+... ..|+++.|.++||.+.||+.
T Consensus 66 ---~~~~~~~n~~~~a~~~~~~~~~~~~~~~g~~I~I~~~IP~gaGLGS 111 (328)
T PTZ00298 66 ---GYIVEKREEQRKAHQLVLRHLNIDTSVDGLKMHLGGPLVPSSGIGA 111 (328)
T ss_pred ---chHHHhHHHHHHHHHHHHHHHhcccCCCCeEEEEECCCCCCCCchH
Confidence 0111224555555555554 34322 24999999999999999974
No 24
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=97.58 E-value=0.00024 Score=59.40 Aligned_cols=94 Identities=22% Similarity=0.191 Sum_probs=66.0
Q ss_pred EEEccceeecccccccc------CCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248 18 VVVSPYRICPLGAHIDH------QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (144)
Q Consensus 18 v~~APGRVnLIGEH~DY------~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (144)
+.+||=|+.+-|.=||+ .||.||.++||+.+++.+.+..|..|++.. +.. ++ +++..
T Consensus 3 i~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~d~~I~~~~---~~~-~~-v~~~~------------ 65 (333)
T COG2605 3 ISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFDDEIRVRY---DRT-EF-VKSYL------------ 65 (333)
T ss_pred ccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCCCceEEEec---chH-Hh-hhhhH------------
Confidence 56799999999999998 489999999999999999999999998872 211 11 11110
Q ss_pred cccccccccCcCChhhHHHHHHHH-HHHcCCCCCCc--EEEEEEccCCCCCCcc
Q 032248 92 HASDSAKIKEECKWGNYARGALYA-LQSRGNNLTQV--KMFLCCHFMNHLFALS 142 (144)
Q Consensus 92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~-l~~~g~~~~~G--~d~~I~g~~p~~~~~~ 142 (144)
.-++. .-++.++.. +.. ..+| +.+...+|+|.++||-
T Consensus 66 --------~~~h~--~~~~~~l~r~~l~----~~g~~~~el~~~~D~P~GSGLG 105 (333)
T COG2605 66 --------ENEHK--PLVVESLKRDFLE----FNGGTPIELHTQSDAPPGSGLG 105 (333)
T ss_pred --------hhcCc--hHHHHHHHHHHHh----hcCCCceEEEEecCCCCCCCCC
Confidence 01122 334444442 222 2234 9999999999999983
No 25
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.86 E-value=0.056 Score=43.99 Aligned_cols=90 Identities=12% Similarity=-0.070 Sum_probs=59.9
Q ss_pred EEEccceeecc----ccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccc
Q 032248 18 VVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (144)
Q Consensus 18 v~~APGRVnLI----GEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (144)
.++||+.|||. |..-| |+.-.-+-.+|+++-.+.+.+.+ .+++.. +..
T Consensus 3 ~~~a~aKiNL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~--~~~i~~-----------~~~-------------- 55 (275)
T PRK14611 3 VLLSPAKVNLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEHH--TLEVKT-----------SSP-------------- 55 (275)
T ss_pred eeeecceEEeeeccCcCCCCCcchhhheeEeccCCcEEEEEECC--cEEEEe-----------CCC--------------
Confidence 36899999974 55545 66666677777777777666533 122221 100
Q ss_pred ccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 93 ASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 93 ~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
....+.|++..++..+++.... ..|+.+.|.++||...||..
T Consensus 56 --------~~~~~~n~v~~a~~~~~~~~g~-~~~~~i~i~k~IP~~~GLGS 97 (275)
T PRK14611 56 --------QIKEEENIVYKALRLFERYTGI-DINYSIFIEKNIPVGAGLGG 97 (275)
T ss_pred --------CCCCcccHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCccH
Confidence 0112789998888888875222 35899999999999999964
No 26
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.31 E-value=0.26 Score=40.54 Aligned_cols=41 Identities=17% Similarity=-0.037 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248 104 KWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 104 ~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
++.|++.-++..+.++......|+++.|.++||.+.||..|
T Consensus 68 ~~~Nlv~ka~~~~~~~~g~~~~~~~i~i~k~IP~~~GLGss 108 (290)
T PRK14608 68 GDDNLVLRAARALRARVGPGLPPGAFHLEKNLPVAAGIGGG 108 (290)
T ss_pred CCCcHHHHHHHHHHHHhCCCCCceEEEEEeCCcCcCCchHH
Confidence 47899987778777643212248999999999999999653
No 27
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=94.20 E-value=0.86 Score=37.61 Aligned_cols=93 Identities=12% Similarity=-0.011 Sum_probs=61.6
Q ss_pred EEEEccceeecc----ccccc-cCCceEEeeeec-ceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccc
Q 032248 17 RVVVSPYRICPL----GAHID-HQGGTVSAMTIN-KGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHV 90 (144)
Q Consensus 17 ~v~~APGRVnLI----GEH~D-Y~gG~VLp~AI~-~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 90 (144)
..+.||+.|||. |-.-| |+.-..+-++|+ ..-.+.+++.++..+++.... . .+ +
T Consensus 7 ~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~i~~~~~~-~--------~~--~--------- 66 (296)
T PRK14615 7 VTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDAPGITVTCTI-P--------DL--D--------- 66 (296)
T ss_pred EEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCCCCEEEEECC-C--------CC--C---------
Confidence 357899999974 66666 777778888887 476777776654445443211 0 01 0
Q ss_pred ccccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccCC
Q 032248 91 VHASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 91 ~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
. . .|.+.-++..+.++ +. ..|+.+.|..+||...||-.|
T Consensus 67 ----------~--~-~Nlv~~a~~~~~~~~~~--~~~~~i~i~k~IP~~~GLGsg 106 (296)
T PRK14615 67 ----------P--E-RNTVTRAYTAFAAATGF--RPPLEVHLRKGIPHGAGLGGG 106 (296)
T ss_pred ----------C--C-ccHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCCCCccHH
Confidence 1 1 45565555666553 43 258999999999999999654
No 28
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=93.85 E-value=0.86 Score=37.02 Aligned_cols=92 Identities=17% Similarity=0.111 Sum_probs=61.0
Q ss_pred EEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccc
Q 032248 18 VVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (144)
Q Consensus 18 v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (144)
.+.||+.||| .|-.-| |+.-..|-++|+++-.+.+.+.++ .+++.... . .+ +
T Consensus 4 ~~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~-~~~i~~~~---~------~~--p----------- 60 (276)
T PRK14612 4 ERLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIAS-GLELRVLG---A------DL--P----------- 60 (276)
T ss_pred EEeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCC-cEEEEcCC---C------CC--C-----------
Confidence 3579999997 477667 888889999999988888877543 34443111 0 01 0
Q ss_pred ccccccccCcCChhhHHHHHHHHHHH-cCCCCCCcEEEEEEccCCCCCCccCC
Q 032248 93 ASDSAKIKEECKWGNYARGALYALQS-RGNNLTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 93 ~~~~~~~~~~~~Wa~Yv~Gv~~~l~~-~g~~~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
.+..|.+.-++..+.+ .+. ..|+++.|..+||.+.||-.|
T Consensus 61 ----------~~~~Nli~ka~~~~~~~~g~--~~~~~I~i~k~IP~~~GLGss 101 (276)
T PRK14612 61 ----------TDERNLVYRAARAYLDAAGQ--PGGVRITLEKRLPLAAGLGGG 101 (276)
T ss_pred ----------CCCcccHHHHHHHHHHHhCC--CCCeEEEEEecCCCcCCCchH
Confidence 1133555444444444 453 248999999999999999654
No 29
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=93.43 E-value=0.56 Score=38.01 Aligned_cols=65 Identities=11% Similarity=-0.089 Sum_probs=46.2
Q ss_pred EeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccccccccCcCChhhHHHHHHHHHHHc
Q 032248 40 SAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSR 119 (144)
Q Consensus 40 Lp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~ 119 (144)
..++|++++.+.+++.++..+.+.+. . . .|++..++..+.++
T Consensus 17 ~a~aI~~~~~v~v~~~~~~~~~~~~~-----------~-----------------------~----~n~i~~~~~~~~~~ 58 (261)
T TIGR01920 17 GAFGIDLWVEAKVREGDEAGVSTYVR-----------G-----------------------N----PRLIERILTAIRSK 58 (261)
T ss_pred eEEEccCceEEEEEECCCCceeeeec-----------C-----------------------C----hHHHHHHHHHHHHh
Confidence 46778888888888876554433221 0 0 17888888888875
Q ss_pred CCCCCCcEEEEEEccCCCCCCccC
Q 032248 120 GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 120 g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
... +.|+++.|.++||...||..
T Consensus 59 ~~~-~~g~~i~i~s~iP~~~GLGS 81 (261)
T TIGR01920 59 FGI-VDGLEVEVESEIPAGSGLKS 81 (261)
T ss_pred cCC-CCCEEEEEecCCCCCCCcch
Confidence 332 36999999999999999863
No 30
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=93.26 E-value=0.98 Score=36.82 Aligned_cols=40 Identities=15% Similarity=-0.092 Sum_probs=32.5
Q ss_pred CChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248 103 CKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 103 ~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
..|.|++.-++..++++.. . .|+++.|..+||.++||..|
T Consensus 61 ~~~~Nlv~~a~~~~~~~~~-~-~~~~i~i~k~IP~~aGLGss 100 (269)
T PRK14609 61 DPEDNLVVKAYNLLKKDFP-L-PPVHIHLYKHIPIGAGLGGG 100 (269)
T ss_pred CccccHHHHHHHHHHHHcC-C-CCeEEEEecCCCCCCcccHH
Confidence 4688999888888887533 3 48999999999999999754
No 31
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=92.68 E-value=2 Score=35.27 Aligned_cols=38 Identities=13% Similarity=-0.046 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248 106 GNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 106 a~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
.|++.-++..|.++.... .|+++.|..+||...||-+|
T Consensus 65 ~Nlv~kA~~~l~~~~~~~-~g~~i~i~K~IP~~aGLGgg 102 (283)
T PRK14610 65 NNTVQRAIGLLLRHSPVR-TNVYVKVIKNIPVSAGLAGG 102 (283)
T ss_pred CcHHHHHHHHHHHHhCCC-CCeEEEEEcCCCCCCcCCcc
Confidence 788877777777643222 49999999999999999765
No 32
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=92.28 E-value=0.28 Score=44.52 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=26.2
Q ss_pred CCCCceeEEEEccceeecccccccc-------CCceEEeeeecc
Q 032248 10 GRDAEVVRVVVSPYRICPLGAHIDH-------QGGTVSAMTINK 46 (144)
Q Consensus 10 G~~p~~~~v~~APGRVnLIGEH~DY-------~gG~VLp~AI~~ 46 (144)
|..|.- +++.||.||.+.|.-.|- ..+-|+-|||..
T Consensus 566 g~g~s~-Viae~PaRiDF~GGW~DTPPiafel~n~AVlglAikl 608 (948)
T KOG4644|consen 566 GAGPST-VIAEAPARIDFFGGWLDTPPIAFELDNAAVLGLAIKL 608 (948)
T ss_pred CCCCce-EEEecceeeeecccccCCCCeeEeccccceeeeEEEe
Confidence 445532 689999999999998874 236788887743
No 33
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=92.13 E-value=1.6 Score=35.67 Aligned_cols=90 Identities=20% Similarity=0.041 Sum_probs=55.1
Q ss_pred EEEccceeecc----ccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccc
Q 032248 18 VVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (144)
Q Consensus 18 v~~APGRVnLI----GEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (144)
.+.||+.|||. |-=-| |+.-..+.++|+++..+.+.+.+ .+++.... .++ +
T Consensus 5 ~~~a~aKiNL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~~--~~~i~~~~---------~~~--p----------- 60 (287)
T PRK14616 5 SVKAFAKINLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPSD--TISMSCTN---------LDL--P----------- 60 (287)
T ss_pred EEeeceeEEeeeecCCCCCCCccceeEEEEEcCCCCEEEEEECC--CEEEEeCC---------CCC--C-----------
Confidence 46899999974 33323 66666777778777777776532 23322100 011 1
Q ss_pred ccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248 93 ASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 93 ~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
.+..|.+.-++..+.++ +. ..|+++.|..+||.+.||-.
T Consensus 61 ----------~~~~nl~~~a~~~~~~~~~~--~~~~~I~i~k~IP~~~GLGs 100 (287)
T PRK14616 61 ----------VDDSNLCIRAAKALQEYAGV--SKGVSITLDKRVPFGAGLGG 100 (287)
T ss_pred ----------CCccHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCCchH
Confidence 12346665555555543 32 35899999999999999854
No 34
>PRK01123 shikimate kinase; Provisional
Probab=89.99 E-value=3.6 Score=33.52 Aligned_cols=86 Identities=9% Similarity=-0.041 Sum_probs=56.8
Q ss_pred EEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccccc
Q 032248 19 VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAK 98 (144)
Q Consensus 19 ~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 98 (144)
+++=|=+..+-++.+-.|+-+ +|+++..+.+++.++.. .+.. .+ ..+
T Consensus 5 ~~~~gg~~~~~~~~~~~g~~~---~i~l~~~v~v~~~~~~~-~~~~-~~--------~~~-------------------- 51 (282)
T PRK01123 5 ATALGAGTIINAIATGKGSAF---GIDLKTTATVELSDDGG-GIEG-EI--------SGN-------------------- 51 (282)
T ss_pred EEecchhhhhhhhhcCcccEE---EeccEEEEEEEECCCCc-eeee-cc--------cCC--------------------
Confidence 356666667777777777766 99999999998866542 2221 00 111
Q ss_pred ccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCcc
Q 032248 99 IKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 99 ~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
+..+ .|++.-++..+.+. +. +.|+++.|.++||...||.
T Consensus 52 --~~~~-~~~v~~~~~~~~~~~~~--~~~~~i~i~s~IP~~~GLG 91 (282)
T PRK01123 52 --PDAD-TRLIERCVELVLERFGI--DYGATVRTKSEIPLASGLK 91 (282)
T ss_pred --CCCC-chHHHHHHHHHHHHhCC--CCCEEEEEecCCCCCCCcc
Confidence 1122 27777777766653 33 2499999999999999985
No 35
>PLN02451 homoserine kinase
Probab=89.96 E-value=1 Score=38.58 Aligned_cols=92 Identities=13% Similarity=-0.041 Sum_probs=52.8
Q ss_pred EEEEcccee-eccccccccCCceEEeeeec-ceEEEEEEecCC---CeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248 17 RVVVSPYRI-CPLGAHIDHQGGTVSAMTIN-KGILLGFVPSGD---TEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (144)
Q Consensus 17 ~v~~APGRV-nLIGEH~DY~gG~VLp~AI~-~~~~va~~~~~d---~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (144)
+.++||+.+ ||- -|.-||.+|+| .+-.+.+++.++ +.++|.... +. -+.+.
T Consensus 54 ~~~~aPA~~ANLG------pgfD~lG~a~d~l~d~v~~~~~~~~~~~~~~i~~~~--g~----~~~l~------------ 109 (370)
T PLN02451 54 VKAFAPATVANLG------PGFDFLGCAVDGLGDFVTARVDPGVRPGEVSISEIT--GD----TGRLS------------ 109 (370)
T ss_pred EEEEeccchhhcc------cChhhhhhhhccCcCEEEEEECCCCCcccEEEEEec--cc----cccCC------------
Confidence 468999999 972 34556667776 666666666543 234444211 00 01110
Q ss_pred cccccccccCcCChhhHHHHHHHHHH-HcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 92 HASDSAKIKEECKWGNYARGALYALQ-SRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~-~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
...-.|.+.-++..+. +.|... .|+++.|.++||.+.||..
T Consensus 110 ----------~~~~~Nlv~~a~~~~~~~~g~~~-~gv~I~i~k~IP~g~GLGS 151 (370)
T PLN02451 110 ----------KDPLRNCAGIAAIATMKLLGIRS-VGLSLSLHKGLPLGSGLGS 151 (370)
T ss_pred ----------CCcccCcHHHHHHHHHHHcCCCC-CCEEEEEeCCCCCCCCccH
Confidence 1111355544444444 345433 5999999999999999964
No 36
>PRK05905 hypothetical protein; Provisional
Probab=89.50 E-value=5.9 Score=32.40 Aligned_cols=38 Identities=13% Similarity=-0.095 Sum_probs=27.7
Q ss_pred hhHHH-HHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248 106 GNYAR-GALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 106 a~Yv~-Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
.|.+. =++..|+++... ..|+++.+.-+||..+||-+|
T Consensus 66 ~nli~~ka~~~l~~~~~~-~~~~~i~l~K~IP~~aGLGgg 104 (258)
T PRK05905 66 SRLILVKTLEWLRDKYNI-KNHFKIKIKKRIPIGSGLGSG 104 (258)
T ss_pred cchHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCCCCC
Confidence 56665 556666654222 248999999999999999776
No 37
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=86.30 E-value=12 Score=30.85 Aligned_cols=38 Identities=11% Similarity=-0.132 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248 106 GNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 106 a~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
.|.+.-++..+.++-.. ..|+++.|..+||...||-+|
T Consensus 74 ~Nlv~ka~~~~~~~~~~-~~~v~I~i~K~IP~~aGLGgg 111 (297)
T PRK14613 74 QNILYKTFIKARSLFPE-LPGVKIHLTKRISPAGGLGGG 111 (297)
T ss_pred cchHHHHHHHHHHHhCC-CCCeEEEEEeCCCccCCcccc
Confidence 67887677777664222 358999999999999999664
No 38
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=85.38 E-value=9.2 Score=31.09 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHc--CCCCC---CcEEEEEEccCCCCCCccCC
Q 032248 106 GNYARGALYALQSR--GNNLT---QVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 106 a~Yv~Gv~~~l~~~--g~~~~---~G~d~~I~g~~p~~~~~~~~ 144 (144)
.|.+.=++..|.++ +.... .|+.+.|.-+||...||-+|
T Consensus 61 ~NLv~kA~~~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGgg 104 (257)
T PRK04181 61 ENIIYKAYQELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGG 104 (257)
T ss_pred CcHHHHHHHHHHHhccccccccCCCceEEEEEeCCCCcCccccc
Confidence 56775566666652 21111 48999999999999999765
No 39
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=84.37 E-value=7.8 Score=31.63 Aligned_cols=92 Identities=12% Similarity=-0.032 Sum_probs=55.0
Q ss_pred EEccceeecc----ccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccc
Q 032248 19 VVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHA 93 (144)
Q Consensus 19 ~~APGRVnLI----GEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 93 (144)
..||+.|||. |..-| |+.-.-+-++|+++-.+.+.+.+...+++. .... +.+ +
T Consensus 3 ~~a~aKiNl~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~~~i~~~--~~~~------~~~--~------------ 60 (300)
T PRK03188 3 VRAPAKVNLHLGVGPLRDDGYHELATVFQAVSLYDEVTVTAADVLSVEVS--GEGA------DQV--P------------ 60 (300)
T ss_pred EeecceEEEeeccCCcCCCCccchHhhheehhhccEEEEEECCCcEEEEe--cCCc------cCC--C------------
Confidence 4799999975 43332 555557778888888888876532223222 1110 001 0
Q ss_pred cccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248 94 SDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 94 ~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
..=.|.+.-++..+.++ +. ..|+.+.|.++||...||-.
T Consensus 61 ---------~~~~nl~~~~~~~~~~~~~~--~~~~~I~i~s~IP~~~GLGS 100 (300)
T PRK03188 61 ---------TDESNLAWRAAELLAEHVGR--APDVHLHIDKGIPVAGGMAG 100 (300)
T ss_pred ---------CCCccHHHHHHHHHHHHhCC--CCCeEEEEEcCCcccCcchH
Confidence 01134555555666553 32 35899999999999999853
No 40
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=81.98 E-value=19 Score=29.96 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248 106 GNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 106 a~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
.|.+.=++..|+++... ..|+++.|..+||.+.||-+|
T Consensus 61 ~Nlv~ra~~~l~~~~g~-~~~v~I~i~K~IP~gaGLGgg 98 (288)
T PRK00650 61 SNSIWKSVALFRRYTGI-TTPVSWRVVKQIPIGAGLAGG 98 (288)
T ss_pred ccHHHHHHHHHHHHhCC-CCCeEEEEeeCCCCcCCcCcc
Confidence 67887777777764222 248999999999999999765
No 41
>PTZ00299 homoserine kinase; Provisional
Probab=81.93 E-value=6.5 Score=33.34 Aligned_cols=90 Identities=10% Similarity=-0.007 Sum_probs=55.7
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (144)
+.+++|+..-=+| -|+-+|-+|++.+-.+.+.+.+...+++..... . .+ +
T Consensus 8 ~~v~vPATsANlG-----pGFDsLGlAL~lyd~v~v~~~~~~~i~i~G~~~-~-------~l--p--------------- 57 (336)
T PTZ00299 8 VVLRVPATTANIG-----PAYDTLGMALSIFMELTVEHADAFSMTVEGEGS-E-------HI--S--------------- 57 (336)
T ss_pred EEEEEeccccccc-----ccHHHHhhhcccCcEEEEEECCCCEEEEecCCc-C-------CC--C---------------
Confidence 4678898876555 567788899999988888875543344431110 0 11 0
Q ss_pred ccccCcCChhhHHHHHHHHH-HHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248 97 AKIKEECKWGNYARGALYAL-QSRGNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 97 ~~~~~~~~Wa~Yv~Gv~~~l-~~~g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
.+-.|.+..++..+ .+.+.....|+.+.|.++||...||-
T Consensus 58 ------~~~~nlv~~a~~~~~~~~~~~~~~g~~i~i~k~IP~~~GLG 98 (336)
T PTZ00299 58 ------TDEDNMVVQACRLAFEEYAHKSMPPLKFIMHSNIPYGCGCG 98 (336)
T ss_pred ------CCcchHHHHHHHHHHHHhcCCCCCceEEEEecCCCccCCcc
Confidence 11234454444444 33443222489999999999999994
No 42
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=80.93 E-value=22 Score=31.48 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=40.2
Q ss_pred EEccceeecccccccc-CCceEEeeeecceEEEEEEecCCC------eEEEEeCCCC-CceEEec
Q 032248 19 VVSPYRICPLGAHIDH-QGGTVSAMTINKGILLGFVPSGDT------EVVLRSGQFD-GEVRFSI 75 (144)
Q Consensus 19 ~~APGRVnLIGEH~DY-~gG~VLp~AI~~~~~va~~~~~d~------~v~i~s~~~~-~~~~~~l 75 (144)
++|||.+=|.||..== -+..-+-.|+++++++.+.+..+. +|+|.|.+|. ....+..
T Consensus 2 ~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~~~~~~y~~ 66 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGAWKWDVRVKSPQFSDREWLYKI 66 (454)
T ss_pred cccCceEEEecceEEecCCCcEEEEEecceEEEEEeecccccccCcceEEEeCCCCCCCceEEEE
Confidence 6899999999997421 133345578999999999765432 4688999996 3444444
No 43
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=80.26 E-value=30 Score=28.93 Aligned_cols=37 Identities=16% Similarity=-0.031 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248 107 NYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG 144 (144)
Q Consensus 107 ~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~ 144 (144)
|-+.=+...|+++.. ...|.++.|+=+||-.+||-+|
T Consensus 67 NLv~rAa~ll~~~~~-~~~~v~I~l~K~IPv~aGLGGG 103 (289)
T COG1947 67 NLVYRAAELLRKRTG-IAGGVSIHLDKNIPVGAGLGGG 103 (289)
T ss_pred hHHHHHHHHHHHHhC-CCCCeeEEEEecCcccCcCccc
Confidence 777666666776433 3458999999999999999887
No 44
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=76.40 E-value=13 Score=30.47 Aligned_cols=37 Identities=8% Similarity=-0.142 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHH-cCCCCCCcEEEEEEccCCCCCCccC
Q 032248 106 GNYARGALYALQS-RGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 106 a~Yv~Gv~~~l~~-~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
.|.+.-++..+.+ .|... .|+++.|.++||.+.||..
T Consensus 60 ~Nlv~~a~~~~~~~~g~~~-~g~~i~i~~~IP~~~GLGS 97 (302)
T TIGR00191 60 DNLIYQVAKRFLDQLGIRM-PPVKVTLEKNIPLGRGLGS 97 (302)
T ss_pred cccHHHHHHHHHHHcCCCC-CCEEEEEEcCCCCcCCCCh
Confidence 4666666666665 34332 4899999999999999964
No 45
>PRK01212 homoserine kinase; Provisional
Probab=76.10 E-value=18 Score=29.41 Aligned_cols=90 Identities=12% Similarity=-0.064 Sum_probs=55.1
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCC-C-e--EEEEeCCCCCceEEecCcccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD-T-E--VVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d-~-~--v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (144)
+.+++|+|.-=+| -|+-+|-+||+.+-.+.+.++.+ . . +++.... .. .+ +
T Consensus 4 ~~v~~pat~anlg-----~gfd~lG~al~~~d~l~~~~~~~~~~~~~~~~~~~~-~~-------~~--p----------- 57 (301)
T PRK01212 4 VKVRVPATSANLG-----PGFDSLGLALSLYDEVLVGDVVSVEAEFSIEVIGEG-AD-------KL--P----------- 57 (301)
T ss_pred EEEEEecchhhcc-----cChhhhhccccCccEEEEEEccCCCCceEEEEEecC-CC-------cC--C-----------
Confidence 3578999965444 35668889999888888876543 1 2 3332111 00 11 0
Q ss_pred ccccccccCcCChhhHHHHHHHHHHH-cCCCCCCcEEEEEEccCCCCCCccC
Q 032248 93 ASDSAKIKEECKWGNYARGALYALQS-RGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 93 ~~~~~~~~~~~~Wa~Yv~Gv~~~l~~-~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
...=.|.+.-++..|.+ .+. ..|+++.|..+||...||..
T Consensus 58 ---------~~~~~Nli~~a~~~~~~~~~~--~~~~~I~i~k~IP~~~GLGs 98 (301)
T PRK01212 58 ---------LDPEKNLVYQAALKFLEKLGK--PPGLRIELEKNIPLGRGLGS 98 (301)
T ss_pred ---------CCCccccHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCcH
Confidence 00013555555566655 343 25899999999999999964
No 46
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=68.96 E-value=27 Score=29.40 Aligned_cols=88 Identities=18% Similarity=0.041 Sum_probs=54.5
Q ss_pred EEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccccc
Q 032248 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSA 97 (144)
Q Consensus 18 v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 97 (144)
.+++|+..-=+| -|+-||.+|+++.-.+.+....| .++|...... . +.+ |.
T Consensus 5 ~v~aPASSANlG-----pGFD~lGlAl~~~~~~~v~~~~~-~~~i~~~g~~-~-----~~i--P~--------------- 55 (299)
T COG0083 5 KVRVPASSANLG-----PGFDVLGLALDLYNDVVVVEVVD-KFEIEVEGEG-A-----DKI--PL--------------- 55 (299)
T ss_pred EEEEeecccccC-----CCccceeeeccccCcEEEEEecC-cEEEEEeccc-c-----cCC--CC---------------
Confidence 467787776555 47779999999888777777665 4445432211 0 011 10
Q ss_pred cccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCc
Q 032248 98 KIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFAL 141 (144)
Q Consensus 98 ~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~ 141 (144)
.... --.+.+...+++.+... ++.+.|..+||.+.||
T Consensus 56 ---~~~n--~~~~~~~~~~~~~~~~~--~~~i~i~k~IP~~rGL 92 (299)
T COG0083 56 ---DPEN--LVYQAALKFLEALGIEA--GVKIRIEKGIPLGRGL 92 (299)
T ss_pred ---Ccce--eHHHHHHHHHHHhCCCc--cEEEEEEcCCCCCCCC
Confidence 1111 22245555666566554 4999999999999988
No 47
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=68.13 E-value=68 Score=26.82 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=50.4
Q ss_pred EEEccceeecc-----ccccccCCceEEeeeec-ceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248 18 VVVSPYRICPL-----GAHIDHQGGTVSAMTIN-KGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (144)
Q Consensus 18 v~~APGRVnLI-----GEH~DY~gG~VLp~AI~-~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (144)
.+++|.|+-+- |+|-==.|| +.+||+ .++.+.+++.++..+++.+.. +. .+
T Consensus 2 ~v~~~~rlH~g~~d~~~~~gr~~Gg--~G~al~~~~~~v~v~~~~~~~v~~~~~~--g~------~l------------- 58 (324)
T TIGR00144 2 IINTPSRIHLTLIDLNGSIGRVDGG--VGLALEEPEIVIGLKESDDMGVEFTSHA--EG------KL------------- 58 (324)
T ss_pred eecccccccccccCCCCccCccccc--eEEEEeCCcEEEEEEECCCceEEecccc--cc------cc-------------
Confidence 36899998542 222222333 455665 556666777665555444321 11 11
Q ss_pred cccccccccCcCChhhHHHHHHHHHHH-cCCCCCCcEEEEEEccCCCCCCcc
Q 032248 92 HASDSAKIKEECKWGNYARGALYALQS-RGNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~-~g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
+...-.|.+.-++..+.+ .|. .|+.+.|.++||...||-
T Consensus 59 ---------~~~~~~n~~~~~~~~~~~~~g~---~~~~i~i~~~IP~~~GLG 98 (324)
T TIGR00144 59 ---------GEEYRRSRIMEAARKTLKHIGS---EGFHFTVRSMFPAHSGLG 98 (324)
T ss_pred ---------cchhHHHHHHHHHHHHHHHhCC---CCEEEEEeecCCCccCcc
Confidence 111224455555555544 342 489999999999999984
No 48
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=66.58 E-value=69 Score=25.99 Aligned_cols=36 Identities=22% Similarity=0.018 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHH-cCCCCCCcEEEEEEccCCCCCCccC
Q 032248 106 GNYARGALYALQS-RGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 106 a~Yv~Gv~~~l~~-~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
.|.+.-++..+.+ .+. ..|+.+.|.++||...||..
T Consensus 66 ~nl~~~a~~~~~~~~~~--~~~~~i~i~~~IP~~~GLGs 102 (280)
T PRK14614 66 GNIAWRAADALLDLSGR--EVGIDISITKNIPVAAGLGG 102 (280)
T ss_pred CcHHHHHHHHHHHHhCC--CCceEEEEEecCCCcCccHH
Confidence 3555444454444 343 25899999999999999853
No 49
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=64.74 E-value=59 Score=27.13 Aligned_cols=83 Identities=10% Similarity=-0.105 Sum_probs=56.0
Q ss_pred EEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccccc
Q 032248 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSA 97 (144)
Q Consensus 18 v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 97 (144)
.++|+|-+.+|---.+..|+ .++||+.+.+.++..+..++ . .-+
T Consensus 4 ~a~A~g~~TIiNAiatG~G~---AfgidL~v~a~v~~~~~~~~--~----------~~~--------------------- 47 (278)
T COG1685 4 RARAYGGGTIINAIATGKGS---AFGIDLKVEAEVRLSDEGKV--R----------GEP--------------------- 47 (278)
T ss_pred eEEecCceeEeeehhcCccc---eeeecceEEEEEEEcCcccc--c----------cCC---------------------
Confidence 36899999999999888886 68899888888877651111 0 000
Q ss_pred cccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248 98 KIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 98 ~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
..=.+-+.-|+..+.++.- .+.|+.+.+.|.||-..||+
T Consensus 48 -----~~d~~li~~~~~~v~e~~g-~~~~~~v~v~SeiP~~~GLk 86 (278)
T COG1685 48 -----EGDTRLIERCVERVREKYG-IPLGVEVEVESEIPVGSGLK 86 (278)
T ss_pred -----CCChHHHHHHHHHHHHHcC-CCcceEEEEecCCCcccCcc
Confidence 0112234456666665432 33589999999999999986
No 50
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=49.64 E-value=29 Score=28.93 Aligned_cols=37 Identities=5% Similarity=-0.003 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 106 GNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 106 a~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
.+.+..++..+++.... ..++.+.+..++|..+||..
T Consensus 66 ~~~v~~~l~~~~~~~~~-~~~v~I~~~n~iP~~aGLgS 102 (305)
T TIGR01240 66 NEKTSNCLDDFRQLRKE-QEKLHIVSQNNFPTAAGLAS 102 (305)
T ss_pred hHHHHHHHHHHHHhcCC-CCceEEEEecCCCCCCccch
Confidence 56788888888875433 35899999999999999964
No 51
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.68 E-value=17 Score=31.58 Aligned_cols=41 Identities=32% Similarity=0.432 Sum_probs=36.5
Q ss_pred EEEEccceeeccccc----------cccCCceEEeeeecceEEEEEEecCC
Q 032248 17 RVVVSPYRICPLGAH----------IDHQGGTVSAMTINKGILLGFVPSGD 57 (144)
Q Consensus 17 ~v~~APGRVnLIGEH----------~DY~gG~VLp~AI~~~~~va~~~~~d 57 (144)
.++.-+|||.-+|++ +|..|+.|+|.-||-.+++.+..+..
T Consensus 30 ~v~i~~GkI~~vg~~~~~~~~~~~viD~~G~~V~PGLID~HtHl~~~~~~~ 80 (406)
T COG1228 30 AVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRG 80 (406)
T ss_pred eEEEECCEEEEecCcccCCCCCCeEEeCCCCEEccceeeccccccccCCcc
Confidence 578899999999988 89999999999999999999865543
No 52
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.40 E-value=35 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=25.3
Q ss_pred ccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCC
Q 032248 33 DHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFD 68 (144)
Q Consensus 33 DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~ 68 (144)
-||||.|++||=...+.+|.-.|=.-+-.-.+.+|.
T Consensus 5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ 40 (204)
T KOG0180|consen 5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQ 40 (204)
T ss_pred eecCceEEEEeCCceEEEEeccccceeeeeeeccch
Confidence 599999999999988888877764433222334554
No 53
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=34.33 E-value=19 Score=30.17 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=15.3
Q ss_pred HhhhhhCCCCceeEEEEccceeec
Q 032248 4 KVSEMSGRDAEVVRVVVSPYRICP 27 (144)
Q Consensus 4 ~F~~~fG~~p~~~~v~~APGRVnL 27 (144)
.|+..-.+-.. +++||+||++
T Consensus 212 ~fEall~AGAN---FASSP~RVlI 232 (287)
T PF05582_consen 212 HFEALLEAGAN---FASSPKRVLI 232 (287)
T ss_pred HHHHHHHcCcc---ccCCccceEE
Confidence 46666655554 7899999996
No 54
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=28.81 E-value=64 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=21.6
Q ss_pred EEccceeeccccccccCCceE----EeeeecceEEEEE
Q 032248 19 VVSPYRICPLGAHIDHQGGTV----SAMTINKGILLGF 52 (144)
Q Consensus 19 ~~APGRVnLIGEH~DY~gG~V----Lp~AI~~~~~va~ 52 (144)
++|||.+=|+| ||....+ ...|++++...-.
T Consensus 6 fSaPGk~LlaG---dYs~lv~glsahaia~nkr~~cs~ 40 (337)
T COG3890 6 FSAPGKLLLAG---DYSILVEGLSAHAIAINKRAFCSF 40 (337)
T ss_pred ecCCCceEEec---cceeeeecceeeEEEeccccccce
Confidence 79999999999 4764332 5666666655544
No 55
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=28.11 E-value=27 Score=29.16 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=14.7
Q ss_pred HhhhhhCCCCceeEEEEccceeec
Q 032248 4 KVSEMSGRDAEVVRVVVSPYRICP 27 (144)
Q Consensus 4 ~F~~~fG~~p~~~~v~~APGRVnL 27 (144)
.|+..--+... +++||+||++
T Consensus 211 ~yEall~AGAN---FASSP~RVlI 231 (283)
T TIGR02855 211 HFESLIRAGAN---FASSPSRVNI 231 (283)
T ss_pred HHHHHHHcCcc---ccCCccceEE
Confidence 35555544444 6899999996
No 56
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=27.92 E-value=64 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=22.2
Q ss_pred ChhHhhhhhCCCCceeEEEEccceeecccc
Q 032248 1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGA 30 (144)
Q Consensus 1 ~~~~F~~~fG~~p~~~~v~~APGRVnLIGE 30 (144)
|-+.+.++||.-||.++++. .|||-..|.
T Consensus 190 mdN~~~~~YgA~PeRlyIi~-~gkv~Y~Gg 218 (237)
T PF00837_consen 190 MDNNFNKAYGALPERLYIIQ-DGKVVYKGG 218 (237)
T ss_pred cCCHHHHHhCCCcceEEEEE-CCEEEEeCC
Confidence 45678999999999877665 788775543
No 57
>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function. One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.
Probab=23.41 E-value=2.6e+02 Score=19.44 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=24.1
Q ss_pred hHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeec
Q 032248 3 NKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTIN 45 (144)
Q Consensus 3 ~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~ 45 (144)
..|.+.||.... ..|- -.|=+.|.|+.+.|.++.
T Consensus 2 ~~~s~LFGg~~~-----~~~~----~~ep~eYkgf~I~~~P~~ 35 (91)
T PF10115_consen 2 SFFSRLFGGGKK-----SEPK----EAEPVEYKGFLIYPEPMS 35 (91)
T ss_pred cHHHHhhCCCCC-----CCCC----ccCCeEeCCEEEEeCccc
Confidence 468899987654 2222 567779999988888765
No 58
>COG2001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.61 E-value=83 Score=23.78 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=30.2
Q ss_pred hHhhhhh-CCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEE
Q 032248 3 NKVSEMS-GRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFV 53 (144)
Q Consensus 3 ~~F~~~f-G~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~ 53 (144)
..|++.+ |..-+ +-.-.-|||+|=..|.+|.+ |++++++...
T Consensus 69 R~~~r~~~~~a~e--~elD~~GRi~ip~~Lr~~A~-------L~kevvlvG~ 111 (146)
T COG2001 69 RAFQRLLFGGAVE--VELDGAGRILIPQNLREYAG-------LEKEVVLVGQ 111 (146)
T ss_pred HHHHHHHhccceE--EeECCCCCEECCHHHHHHhC-------CCccEEEecC
Confidence 3466555 55544 45788999999999999987 6666666554
No 59
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=20.29 E-value=2.2e+02 Score=21.51 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=23.2
Q ss_pred cCCceEEeeeecceEEEEEEecCCCeEEE
Q 032248 34 HQGGTVSAMTINKGILLGFVPSGDTEVVL 62 (144)
Q Consensus 34 Y~gG~VLp~AI~~~~~va~~~~~d~~v~i 62 (144)
|+|+.++.+.-+-.+++|+-++......+
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~ 29 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQT 29 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEe
Confidence 78999999999999999988875544434
Done!