Query 032248
Match_columns 144
No_of_seqs 134 out of 1077
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 18:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 6.2E-30 2.1E-34 223.4 14.0 122 2-142 27-163 (520)
2 3k85_A D-glycero-D-manno-hepto 99.9 1.4E-23 4.9E-28 174.5 13.8 106 17-143 4-115 (357)
3 1pie_A Galactokinase; galactos 99.9 1.5E-22 5.2E-27 170.7 15.3 122 2-143 35-158 (419)
4 2a2c_A N-acetylgalactosamine k 99.9 4.1E-22 1.4E-26 171.4 14.0 122 2-143 43-166 (478)
5 1wuu_A Galactokinase; galactos 99.9 5E-22 1.7E-26 166.4 14.1 121 2-143 24-148 (399)
6 3k17_A LIN0012 protein; protei 99.8 2.2E-20 7.5E-25 155.9 12.0 103 17-142 7-118 (365)
7 1kvk_A MK, mevalonate kinase; 99.8 6.3E-20 2.2E-24 153.2 10.8 127 17-143 6-145 (395)
8 2pg9_A Phosphomevalonate kinas 99.8 1.8E-18 6.1E-23 142.6 10.9 97 17-143 4-108 (337)
9 2cz9_A Probable galactokinase; 99.7 6.8E-18 2.3E-22 137.6 9.3 103 17-143 2-104 (350)
10 1kkh_A Mevalonate kinase; mixe 99.7 1.3E-16 4.4E-21 128.8 12.3 107 17-143 6-116 (317)
11 2x7i_A Mevalonate kinase; tran 99.6 1.8E-15 6.1E-20 121.7 9.2 95 17-143 7-103 (308)
12 4hac_A Mevalonate kinase; GHMP 99.6 7.3E-15 2.5E-19 120.1 11.0 93 17-143 22-114 (321)
13 3gon_A Phosphomevalonate kinas 99.5 1.1E-13 3.7E-18 111.4 9.7 100 17-142 2-105 (335)
14 2ww4_A 4-diphosphocytidyl-2C-m 99.3 1.1E-11 3.8E-16 99.7 8.1 91 18-143 4-106 (283)
15 2gs8_A Mevalonate pyrophosphat 99.2 4.6E-12 1.6E-16 102.6 4.2 101 17-143 9-109 (317)
16 2hfs_A Mevalonate kinase, puta 99.2 1.6E-11 5.4E-16 99.5 7.0 98 17-143 14-114 (332)
17 3qt5_A Mevalonate diphosphate 99.1 3.6E-11 1.2E-15 99.0 5.9 101 17-143 10-111 (332)
18 2v8p_A 4-diphosphocytidyl-2-C- 99.1 8.4E-11 2.9E-15 93.5 7.8 88 17-143 5-98 (271)
19 2oi2_A Mevalonate kinase; enzy 99.0 7.7E-10 2.6E-14 87.6 8.5 85 17-143 6-91 (292)
20 1h72_C HK, homoserine kinase; 98.9 4.6E-09 1.6E-13 83.5 9.8 89 17-143 3-93 (296)
21 1uek_A 4-(cytidine 5'-diphosph 98.7 4.2E-08 1.4E-12 77.7 6.9 83 21-143 5-93 (275)
22 3pyf_A 4-diphosphocytidyl-2-C- 98.0 4.8E-05 1.6E-09 61.6 10.6 94 17-143 6-105 (306)
23 1fi4_A Mevalonate 5-diphosphat 97.7 2.1E-05 7.3E-10 66.3 3.8 101 17-142 26-139 (416)
24 3hul_A HSK, HK, homoserine kin 93.0 0.35 1.2E-05 38.5 7.7 86 17-143 3-88 (298)
25 2hke_A Diphosphomevalonate dec 64.9 44 0.0015 27.0 9.2 93 18-142 7-113 (380)
26 2jmb_A AGR_L_42P, hypothetical 27.4 16 0.00054 23.9 0.4 15 22-36 38-52 (79)
27 3lto_A Mevalonate diphosphate 25.1 95 0.0032 24.9 4.8 20 124-143 90-109 (323)
28 2fsu_A Protein PHNH; C-P lyase 25.0 1.5E+02 0.005 22.6 5.6 24 111-134 172-195 (210)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.96 E-value=6.2e-30 Score=223.36 Aligned_cols=122 Identities=18% Similarity=0.203 Sum_probs=98.1
Q ss_pred hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEec--CCCeEEEEeCCCC-CceEEec--C
Q 032248 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS--GDTEVVLRSGQFD-GEVRFSI--D 76 (144)
Q Consensus 2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~--~d~~v~i~s~~~~-~~~~~~l--~ 76 (144)
.+.|++.||.+|+ .+++|||||||||||||||||+|||||||+++++++++| +|++|+|+|.+.+ +..+|++ +
T Consensus 27 ~~~F~~~fg~~p~--~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~i~S~~~~~~~~~~~l~~~ 104 (520)
T 3v2u_C 27 VDAFFQTYHVKPD--FIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNADPKFAQRKFDLPLD 104 (520)
T ss_dssp HHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEEEEESSTTSCCEEEECCTT
T ss_pred HHHHHHHhCCCCC--EEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCEEEEEECCCCCCceEEEeccC
Confidence 5789999999998 789999999999999999999999999999999999998 8899999998854 3466777 3
Q ss_pred ccccccccccccccccccccccccCcCChhhHHHHHH----HHHHHc------CCCCCCcEEEEEEccCCCCCCcc
Q 032248 77 EIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGAL----YALQSR------GNNLTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~----~~l~~~------g~~~~~G~d~~I~g~~p~~~~~~ 142 (144)
+.... ...+..+|+||++|++ +.|++. |... .|||++|.|+||.++|||
T Consensus 105 ~~~~~----------------i~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~-~G~~i~i~s~vP~gsGLS 163 (520)
T 3v2u_C 105 GSYMA----------------IDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL-VGAQIFCQSDIPTGGGLS 163 (520)
T ss_dssp CCCCC----------------CCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC-CCEEEEEEECCCTTSSHH
T ss_pred ccccc----------------cCcccccHHHHHHHHHHHHHHHHHhhcccccccCCC-CceEEEEecCCCCCCCHH
Confidence 21000 0124578999999865 345543 3343 699999999999999984
No 2
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.4e-23 Score=174.52 Aligned_cols=106 Identities=11% Similarity=-0.041 Sum_probs=92.3
Q ss_pred EEEEccceeecccccccc------CCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDH------QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHV 90 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY------~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 90 (144)
++++|||||||||||||| +||.|||+|||+++++++++++|+.++|.|.+++...+|++++.
T Consensus 4 i~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i~s~~~~~~~~~~~~~~------------ 71 (357)
T 3k85_A 4 VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCCKSYLSMSQ------------ 71 (357)
T ss_dssp EEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEECCSS------------
T ss_pred EEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCCCeEEEEECCCCceEEEecccc------------
Confidence 478999999999999999 99999999999999999999999999999988875556666531
Q ss_pred ccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 91 VHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 91 ~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
.+..+|.||++++++.|++.+.....||++.|.++||.+.||+.
T Consensus 72 ---------~~~~~~~~~v~~~~~~l~~~~~~~~~g~~i~i~~~iP~g~GLgS 115 (357)
T 3k85_A 72 ---------LEIDGEASLIKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGT 115 (357)
T ss_dssp ---------CCCCSSSHHHHHHHHHHHHHTTCCCCCEEEEEEESSCSSSSSCH
T ss_pred ---------ccccchHHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCCchH
Confidence 13468999999999999987764236999999999999999974
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.89 E-value=1.5e-22 Score=170.67 Aligned_cols=122 Identities=30% Similarity=0.392 Sum_probs=102.5
Q ss_pred hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCC--CceEEecCccc
Q 032248 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFD--GEVRFSIDEIQ 79 (144)
Q Consensus 2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~--~~~~~~l~~l~ 79 (144)
.+.|++.||.+|+. .+++|||||||+|||+||+||.||++||++++++.+++++++.+++.+.+++ ...+++++++.
T Consensus 35 ~~~f~~~~g~~~~~-~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 113 (419)
T 1pie_A 35 TEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDLDEVE 113 (419)
T ss_dssp HHHHHHHHSCCCSC-EEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEEETTCTT
T ss_pred HHHHHHHhCCCCce-EEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEECCCCEEEEEECCCCCcceeEEeccccc
Confidence 57899999999862 4789999999999999999999999999999999999998888999887764 34556665431
Q ss_pred cccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
+ .+..+|.||+++++..|++.++....|+++.|.++||.+.||+.
T Consensus 114 -~------------------~~~~~~~n~v~~~~~~l~~~g~~~~~g~~i~i~s~IP~gaGLGS 158 (419)
T 1pie_A 114 -K------------------KDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSS 158 (419)
T ss_dssp -S------------------CCTTCTHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCTTSSSCH
T ss_pred -C------------------CCCcCHHHHHHHHHHHHHHhCCCCCCCEEEEEECCCCCCCChhH
Confidence 1 13468999999999999887665546999999999999999974
No 4
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.88 E-value=4.1e-22 Score=171.41 Aligned_cols=122 Identities=22% Similarity=0.200 Sum_probs=95.0
Q ss_pred hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCC-CceEEecCcccc
Q 032248 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFD-GEVRFSIDEIQQ 80 (144)
Q Consensus 2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~-~~~~~~l~~l~~ 80 (144)
.+.|++.||.+|+ ++++|||||||+|||+||+|+.||++||++++++++++++++.++|.+.+.+ ...+++++++..
T Consensus 43 ~~~f~~~fg~~~~--~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~l~~ 120 (478)
T 2a2c_A 43 KEMFNSKFGSIPK--FYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLYPDFSTSANNIQI 120 (478)
T ss_dssp HHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCEEEEESSTTSCCEEECCCCC--
T ss_pred HHHHHHHhCCCCC--EEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEECCCCeEEEEECCCCCcceeccchhccc
Confidence 4789999999997 7899999999999999999999999999999999999998888999887643 123333343211
Q ss_pred ccccccccccccccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248 81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
...+..|.||++.++..+.+. +.....||++.|.|+||.+.||+.
T Consensus 121 ------------------~~~~~~~~n~v~~a~~~v~~~~~~~~~~g~~i~i~s~IP~g~GLgS 166 (478)
T 2a2c_A 121 ------------------DKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSS 166 (478)
T ss_dssp ------------------CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEECSCTTSSSCH
T ss_pred ------------------CCCcccHHHHHHHHHHHHHHHHhccCCCceEEEEECCCCCCCCchH
Confidence 124578999996655554432 211136999999999999999973
No 5
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.88 E-value=5e-22 Score=166.39 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=98.8
Q ss_pred hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCc----eEEecCc
Q 032248 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE----VRFSIDE 77 (144)
Q Consensus 2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~----~~~~l~~ 77 (144)
.+.|++.||.+|+ ++++|||||||+|||+||+||.||++||++++++++++++++.++|.+.+++.. .+++++.
T Consensus 24 ~~~f~~~~~~~~~--~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 101 (399)
T 1wuu_A 24 RRAFREEFGAEPE--LAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPT 101 (399)
T ss_dssp HHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCC
T ss_pred HHHHHHHhCCCCC--EEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEECCCCeEEEEECCCCCccccceEEecCc
Confidence 4789999999997 689999999999999999999999999999999999999888999998776522 3455442
Q ss_pred cccccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
+. . .......+|.||+++++..| ++... .|+++.|.++||.+.||+.
T Consensus 102 ~~-~---------------~~~~~~~~~~n~v~~a~~~l--~~~~~-~g~~i~i~s~IP~gaGLGS 148 (399)
T 1wuu_A 102 AQ-R---------------SLEPGTPRWANYVKGVIQYY--PAAPL-PGFSAVVVSSVPLGGGLSS 148 (399)
T ss_dssp SS-C---------------CCCCCSSGGGHHHHHHHHHC--SSSCC-CEEEEEEEECSCTTSSSCH
T ss_pred cc-c---------------ccccCCCCHHHHHHHHHHHh--cCCCC-CCeEEEEECCCCCCCCccH
Confidence 11 0 00124568999999999988 45544 5999999999999999974
No 6
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.83 E-value=2.2e-20 Score=155.93 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=80.9
Q ss_pred EEEEccceeeccccccccC-CceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~-gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (144)
.+++|||||||||||+||+ ||+|||+||++++++++++++|. +|.+.+++...+++++...
T Consensus 7 i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~--~i~s~~~~~~~~~~~~~~~---------------- 68 (365)
T 3k17_A 7 LQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERN--ELWIPHYENPVSWPIGGEL---------------- 68 (365)
T ss_dssp EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSC--EEECTTCSSCBCCCTTSCC----------------
T ss_pred EEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEECCCc--EEEecCCCcceeeecccCC----------------
Confidence 5799999999999999996 99999999999999999999876 5778777654444443210
Q ss_pred cccccCcCChhhHHHHHHHHHH----HcCCCCCCcEEEEEEccCCC----CCCcc
Q 032248 96 SAKIKEECKWGNYARGALYALQ----SRGNNLTQVKMFLCCHFMNH----LFALS 142 (144)
Q Consensus 96 ~~~~~~~~~Wa~Yv~Gv~~~l~----~~g~~~~~G~d~~I~g~~p~----~~~~~ 142 (144)
......| +|++++++.+. +.|... .||++.|.++||. ..||+
T Consensus 69 ---~~~~~~~-~yv~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~~g~~~GLg 118 (365)
T 3k17_A 69 ---KPDGEHW-TFTAEAINIATTFLKSEGIEL-TPVKMVIETELIDQSGAKYGLG 118 (365)
T ss_dssp ---CCSCGGG-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEEESSBCTTSCBCSSC
T ss_pred ---CCCCChH-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEcCCCCCCCCCCccc
Confidence 1134568 99999998765 346655 5999999999995 56776
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.81 E-value=6.3e-20 Score=153.24 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=84.4
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccc-ccccccccc-cc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRN-SVKKHHVVH-AS 94 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~-~~~~~~~~~-~~ 94 (144)
++++|||||||||||+||+||.|||+||++++++++++++++.+++.+.+.+...+++++++..... ...+.+... ..
T Consensus 6 ~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
T 1kvk_A 6 LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAPTL 85 (395)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC-------------
T ss_pred EEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCCCeEEEEcCCCCceEEEEhHhhhhhhcccccccccccccH
Confidence 6799999999999999999999999999999999999999999999887765334666654311000 000000000 00
Q ss_pred cc----ccccCcCChhhHH-----HHHHHHHHHc-CCC-CCCcEEEEEEccCCCCCCccC
Q 032248 95 DS----AKIKEECKWGNYA-----RGALYALQSR-GNN-LTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 95 ~~----~~~~~~~~Wa~Yv-----~Gv~~~l~~~-g~~-~~~G~d~~I~g~~p~~~~~~~ 143 (144)
.. .......+|.+|+ +++++.+.+. +.. ...|+++.|.++||.+.||+.
T Consensus 86 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGS 145 (395)
T 1kvk_A 86 EQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGS 145 (395)
T ss_dssp ---CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCH
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCCCCCCccH
Confidence 00 0001134899994 4444445442 331 136999999999999999974
No 8
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.77 E-value=1.8e-18 Score=142.64 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=78.9
Q ss_pred EEEEccceeecccccc-ccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHI-DHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~-DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (144)
..++|||||||||||+ ||+||.|||+||+++++++++++++ ++|.+..++.. ++.
T Consensus 4 i~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~~~--~~i~s~~~~~~----~~~------------------ 59 (337)
T 2pg9_A 4 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS--YRIYSDMFDFA----VDL------------------ 59 (337)
T ss_dssp EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS--CEEEETTSSSC----BCS------------------
T ss_pred EEEeeCceEEEeccceEecCCCEEEEEEccccEEEEEEeCCc--EEEecCCCCce----eee------------------
Confidence 4689999999999999 9999999999999999999999863 78888776532 111
Q ss_pred cccccCcCChhhHHHHHHHHHHH----cCCCCCCcEEEEEEccCCCC---CCccC
Q 032248 96 SAKIKEECKWGNYARGALYALQS----RGNNLTQVKMFLCCHFMNHL---FALSY 143 (144)
Q Consensus 96 ~~~~~~~~~Wa~Yv~Gv~~~l~~----~g~~~~~G~d~~I~g~~p~~---~~~~~ 143 (144)
.++..| +|++++++.+.+ .|... .||++.|.++||.+ .||+.
T Consensus 60 ----~~~~~~-~~v~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~g~k~GLgS 108 (337)
T 2pg9_A 60 ----RPNPDY-SLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMEREGKKFGLGS 108 (337)
T ss_dssp ----SCCTTT-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEETTEECSSCH
T ss_pred ----cCCCCc-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEccCCCCCCCccccH
Confidence 023468 899999988765 35555 59999999999999 99873
No 9
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.73 E-value=6.8e-18 Score=137.61 Aligned_cols=103 Identities=20% Similarity=0.178 Sum_probs=82.3
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (144)
.+++|||||||+|||+||+|+.+|++||++++++.+++++++.+++.+.+.+...++ ++ .
T Consensus 2 ~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~-l~---~---------------- 61 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSEHFGEERKFSL-ND---L---------------- 61 (350)
T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEETTTTEEEEECT-TC---C----------------
T ss_pred eEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEECCCCeEEEEECCCCccccc-cC---C----------------
Confidence 368999999999999999999999999999999999998877777765433211111 21 0
Q ss_pred ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
.+...|.||+++++..|++.+... .|+++.|.++||.+.||+.
T Consensus 62 ---~~~~~~~~~~~~~~~~l~~~~~~~-~g~~i~i~s~IP~g~GLGS 104 (350)
T 2cz9_A 62 ---RKENSWIDYVKGIFWVLKESDYEV-GGIKGRVSGNLPLGAGLSS 104 (350)
T ss_dssp ---CCCSSTHHHHHHHHHHHHHTTCCC-CEEEEEEECSCCTTSSSCH
T ss_pred ---CCCCcHHHHHHHHHHHHHhcCCCC-CCeEEEEECCCCCCCCcch
Confidence 124689999999999998776554 5999999999999999974
No 10
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.70 E-value=1.3e-16 Score=128.82 Aligned_cols=107 Identities=12% Similarity=0.161 Sum_probs=84.6
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (144)
+.++|||||||+|||+||+|+.+|++||++++++.++++++..+++.+.+.+...++.+++.. +
T Consensus 6 ~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~-~--------------- 69 (317)
T 1kkh_A 6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIK-N--------------- 69 (317)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETTTGG-G---------------
T ss_pred EEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEECCCCeEEEEeCCCCCceEEEeccCC-c---------------
Confidence 578999999999999999999999999999999999999888898887765544556654211 1
Q ss_pred ccccCcCChhhHHHHHHHHHHHc----CCCCCCcEEEEEEccCCCCCCccC
Q 032248 97 AKIKEECKWGNYARGALYALQSR----GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 97 ~~~~~~~~Wa~Yv~Gv~~~l~~~----g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
..+..| +|++.++..+.+. +.....|+++.|.++||...||+.
T Consensus 70 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGs 116 (317)
T 1kkh_A 70 ---INPNNF-GDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGS 116 (317)
T ss_dssp ---CCGGGS-GGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCH
T ss_pred ---cCcccc-hHHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCCCCCchH
Confidence 134568 8888888877652 333236999999999999999964
No 11
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.61 E-value=1.8e-15 Score=121.66 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=76.5
Q ss_pred EEEEccceeeccccccccCCceEEeeeecce-EEEEEEecCCCe-EEEEeCCCCCceEEecCcccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKG-ILLGFVPSGDTE-VVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHAS 94 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~-~~va~~~~~d~~-v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 94 (144)
..++|||||||+|||+||+|+.+|+++|++. +.+.++++++.. +++.+..++. .+ +
T Consensus 7 ~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~~~~~~i~~~~~~~~~-------~~--~------------- 64 (308)
T 2x7i_A 7 GYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSDVYDG-------ML--Y------------- 64 (308)
T ss_dssp EEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTCCCEEEEEECSS-------CC--C-------------
T ss_pred eEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEECCCCCeeEEEecCCCC-------Ch--h-------------
Confidence 5789999999999999999999999999985 889999987766 6666533321 11 1
Q ss_pred ccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 95 DSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 95 ~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
...+|.||+++++..+.+. . .|+++.|.++||...||+.
T Consensus 65 ------~~~~~~~~v~~~~~~~~~~---~-~g~~i~i~~~iP~g~GLGS 103 (308)
T 2x7i_A 65 ------DAPDHLKSLVNRFVELNNI---T-EPLAVTIQTNLPPSRGLGS 103 (308)
T ss_dssp ------CTTSCHHHHHHHHHHHTTC---C-SCEEEEEEECCCTTSSSCH
T ss_pred ------hhhHHHHHHHHHHHHHHhh---C-CCeEEEEeccCCCCCCccH
Confidence 1247999999999888653 2 4999999999999999974
No 12
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.59 E-value=7.3e-15 Score=120.13 Aligned_cols=93 Identities=11% Similarity=0.010 Sum_probs=69.8
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (144)
+.++|||||||+|||+||+||.+|++||++++++.++++++ ++|.+.+.. ..+..
T Consensus 22 i~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~~~--i~i~~~~~~-------~~~~~---------------- 76 (321)
T 4hac_A 22 VSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDS--ITIQSQIGR-------TGLDF---------------- 76 (321)
T ss_dssp EEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEECSS--EEEEETTEE-------ESSCT----------------
T ss_pred EEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEECCC--EEEEECCCC-------ccccc----------------
Confidence 57899999999999999999999999999999999998653 888774421 11110
Q ss_pred ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
....|. +.+...|++.+ ...|+++.|.++||...||+.
T Consensus 77 ----~~~~~~---~~~~~~l~~~~--~~~g~~i~i~~~iP~g~GLGS 114 (321)
T 4hac_A 77 ----EKHPYV---SAVIEKMRKSI--PINGVFLTVDSDIPVGSGLGS 114 (321)
T ss_dssp ----TTSHHH---HHHHHHHTTTS--CCCCEEEEEEECCCSCTTCCH
T ss_pred ----chhHHH---HHHHHHHHHhC--CCCCEEEEEECCCCCCCCccH
Confidence 122444 44555555444 235999999999999999974
No 13
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.49 E-value=1.1e-13 Score=111.36 Aligned_cols=100 Identities=18% Similarity=0.033 Sum_probs=77.1
Q ss_pred EEEEccceeeccccc-cccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAH-IDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (144)
Q Consensus 17 ~v~~APGRVnLIGEH-~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (144)
..++|||+|.|+||| +.|.|+.+|++||++++++.++++++.+ |++..++....+..+
T Consensus 2 i~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~~~~~--i~~~~~~~~~~~~~~------------------- 60 (335)
T 3gon_A 2 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYR--IYSDMFDFAVDLRPN------------------- 60 (335)
T ss_dssp EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE--EEETTSSSCBCSSCC-------------------
T ss_pred EEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEECCCCE--EEEeCCCcccccCcC-------------------
Confidence 368999999999999 8999999999999999999999998765 455555432111111
Q ss_pred cccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCC---CCcc
Q 032248 96 SAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHL---FALS 142 (144)
Q Consensus 96 ~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~---~~~~ 142 (144)
.+..-|.+|++++...|.+.+... .||++.|.|++|.. +|||
T Consensus 61 ----~~~~~~~~~i~~~~~~l~~~~~~~-~~~~i~I~s~lp~~~~~~GLg 105 (335)
T 3gon_A 61 ----PDYSLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMEREGKKFGLG 105 (335)
T ss_dssp ----TTTHHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEETTEECSSC
T ss_pred ----CCcHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecCCcccCCCCcc
Confidence 122346778888888888888776 59999999999966 4665
No 14
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.26 E-value=1.1e-11 Score=99.66 Aligned_cols=91 Identities=12% Similarity=-0.039 Sum_probs=72.5
Q ss_pred EEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccc
Q 032248 18 VVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (144)
Q Consensus 18 v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (144)
.++||||||| +|||.| |+++.++++||+++..+.+++++++.+++.+.. +.+ +
T Consensus 4 ~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~~~i~i~~~~---------~~~--~----------- 61 (283)
T 2ww4_A 4 QWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPV---------EGV--E----------- 61 (283)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSCEEECSCB---------TTB--C-----------
T ss_pred cccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCCCcEEEEeCC---------CCC--C-----------
Confidence 4689999999 999999 999999999999999999999877677765321 111 1
Q ss_pred ccccccccCcCChhhHHHHHHHHHHHc-------CCCCCCcEEEEEEccCCCCCCccC
Q 032248 93 ASDSAKIKEECKWGNYARGALYALQSR-------GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 93 ~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-------g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
.-.||+..++..+.++ |. ..|+++.|.++||.+.||+.
T Consensus 62 -----------~~~nlv~~a~~~~~~~~~~~~~~g~--~~g~~i~i~~~IP~g~GLGs 106 (283)
T 2ww4_A 62 -----------HEDNLIVRAARLLMKTAADSGRLPT--GSGANISIDKRLPMGGGLGG 106 (283)
T ss_dssp -----------GGGSHHHHHHHHHHHHHHHTTCSCT--TCEEEEEEECCCC-CTTSCH
T ss_pred -----------CcccHHHHHHHHHHHHhhhhcccCC--CCceEEEEEeCCCCCCCccH
Confidence 1159999999888764 54 35999999999999999974
No 15
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.23 E-value=4.6e-12 Score=102.60 Aligned_cols=101 Identities=14% Similarity=0.007 Sum_probs=73.9
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (144)
..++||+||+|||+|+||++|++||+.....+.+. ..+.+-+++..+.+++ ..++.++.. .
T Consensus 9 ~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~-~l~~~~~v~~~~~~~~-~~~~~~~g~--~--------------- 69 (317)
T 2gs8_A 9 ITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE-NMFTTTSVSFLPDTAT-SDQFYINGI--L--------------- 69 (317)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEEECCTTCC-SCEEEETTE--E---------------
T ss_pred EEEEecCcEEEEeeeeeccCCcccCCCCceEEEee-cccceEEEEEEcCCCC-eEEEEECCC--c---------------
Confidence 57999999999999999999999999988777765 3444333433233322 234544421 1
Q ss_pred ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
...+|.||++.++..+.+.+. .|+++.+.++||.+.||..
T Consensus 70 ----~~~~~~n~v~~~~~~~~~~~~---~g~~I~i~~~IP~~~GLGS 109 (317)
T 2gs8_A 70 ----QNDEEHTKISAIIDQFRQPGQ---AFVKMETQNNMPTAAGLSS 109 (317)
T ss_dssp ----CCHHHHHHHHHHHTTTCCTTC---CCEEEEEECCSCGGGCCCH
T ss_pred ----cccchHHHHHHHHHHHHHhcC---CCeEEEEeCCCCCCCchHH
Confidence 123799999999998886543 5899999999999999963
No 16
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.22 E-value=1.6e-11 Score=99.47 Aligned_cols=98 Identities=8% Similarity=-0.072 Sum_probs=68.1
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecC-CCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG-DTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~-d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (144)
..++|||||||+|||.||+|+.++.+||++++.+.+++++ ++.+++.+... .++.
T Consensus 14 ~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~~~~~~~~~~------~~~~------------------ 69 (332)
T 2hfs_A 14 GKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGVPGLQVDDQRP------AIPG------------------ 69 (332)
T ss_dssp SCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTCCSEEEEECCC------CCTT------------------
T ss_pred EEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcCCCCCeEEEecCc------cccc------------------
Confidence 4789999999999999999999999999999999999875 34555543221 0110
Q ss_pred cccccCcCChhhHHHHHHH-HHHHcCCCC-CCcEEEEEEccCCCCCCccC
Q 032248 96 SAKIKEECKWGNYARGALY-ALQSRGNNL-TQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 96 ~~~~~~~~~Wa~Yv~Gv~~-~l~~~g~~~-~~G~d~~I~g~~p~~~~~~~ 143 (144)
......|.+.-++. .+...+... ..|+++.|.++||...||+.
T Consensus 70 -----~~~~~~~~~~~a~~~~~~~~g~~~~~~g~~i~i~~~iP~g~GLGS 114 (332)
T 2hfs_A 70 -----YIAQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGA 114 (332)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTTBCCSSSEEEEEEECSCCCCTTSCH
T ss_pred -----cccccchhHHHHHHHHHHHcCCccCCCceEEEEEcCCCCCCCccH
Confidence 00122344433343 444445432 25999999999999999964
No 17
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.15 E-value=3.6e-11 Score=99.02 Aligned_cols=101 Identities=10% Similarity=0.008 Sum_probs=76.3
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (144)
..++||+||+|||+|+||+++.+||+.....+.+. .++.+-+++ .+.++++ .++.++...
T Consensus 10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~-~~~~~~~v~-~~~~~~~-~~~~i~g~~----------------- 69 (332)
T 3qt5_A 10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD-RFYTETKVT-FDPDFTE-DCLILNGNE----------------- 69 (332)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEE-EETTCSS-CEEEETTEE-----------------
T ss_pred EEEEecCcEEEEeeeeeccCCccccCCCceEEEec-CCCCeeEEE-EcCCCCc-cEEEECCcc-----------------
Confidence 47899999999999999999999999999888887 344444455 3444432 455554311
Q ss_pred ccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248 97 AKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 97 ~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
...+|.|++..++..+.++ +. ..|+++.+.++||...||..
T Consensus 70 ----~~~~~~n~v~~~~~~~~~~~~~--~~~~~i~~~~~iP~~~GLgS 111 (332)
T 3qt5_A 70 ----VNAKEKEKIQNYMNIVRDLAGN--RLHARIESENYVPTAAGLAS 111 (332)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHTC--CCEEEEEEEEESCGGGTCCC
T ss_pred ----CCcchHHHHHHHHHHHHHhcCC--CCCEEEEEecCCCCCCCcch
Confidence 1235999999999988774 33 35899999999999999964
No 18
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.15 E-value=8.4e-11 Score=93.45 Aligned_cols=88 Identities=13% Similarity=-0.050 Sum_probs=71.3
Q ss_pred EEEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248 17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (144)
Q Consensus 17 ~v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (144)
..++||||||| +|+|.| |+++.+++++|+++..+ +++ ++.+++.. +.+
T Consensus 5 ~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~~~i~i~~-----------~~~------------- 57 (271)
T 2v8p_A 5 IKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--EGVLRVET-----------NIG------------- 57 (271)
T ss_dssp EEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--ESSCEEEE-----------SSC-------------
T ss_pred EEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe--CCeEEEEe-----------CCC-------------
Confidence 46899999999 999999 99999999999999999 887 34555543 111
Q ss_pred cccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248 92 HASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
..+|.||+..++..+.++ +.. .|+++.|.++||.+.||..
T Consensus 58 ----------~~~~~nlv~~a~~~~~~~~g~~--~g~~i~i~~~IP~g~GLGs 98 (271)
T 2v8p_A 58 ----------IPQEENLVYKGLREFERITGIE--INYSIFIQKNIPPGAGLGG 98 (271)
T ss_dssp ----------CCTTTCHHHHHHHHHHHHHCCC--CCEEEEEECCSCTTSSSCH
T ss_pred ----------CCCCchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCCCCCch
Confidence 125899999999888764 442 5899999999999999964
No 19
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.02 E-value=7.7e-10 Score=87.57 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=56.4
Q ss_pred EEEEccceeeccccccccCCceEEeeee-cceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTI-NKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI-~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (144)
..++|||||||+|||.||+|+.+|++|| ++++.+.+++++ +.+++.+..
T Consensus 6 ~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~-~~~~i~~~~----------------------------- 55 (292)
T 2oi2_A 6 GVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAE-SPWRLYEED----------------------------- 55 (292)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECS-SCCCCCCCS-----------------------------
T ss_pred EEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECC-CceEEEecC-----------------------------
Confidence 4689999999999999999999999999 999999999863 333322110
Q ss_pred cccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 96 SAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 96 ~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
..|.+.-+...+. +... .|+++.|.++||...||+.
T Consensus 56 ---------~~~~~~~~~~~~~--~~~~-~g~~i~i~~~iP~g~GLGS 91 (292)
T 2oi2_A 56 ---------TLSMAVYASLEYL--NITE-ACIRCEIDSAIPEKRGMGS 91 (292)
T ss_dssp ---------HHHHHHHHHHHHH--TCSC-CCEEEEEC----CCGGGSC
T ss_pred ---------ccchhhhhhHHHh--cccC-CceEEEEEecCCCCCCchH
Confidence 0011111122222 4322 5899999999999999964
No 20
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=98.93 E-value=4.6e-09 Score=83.52 Aligned_cols=89 Identities=13% Similarity=0.043 Sum_probs=67.6
Q ss_pred EEEEccceeeccccccccCCceEEeeeecc-eEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINK-GILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~-~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (144)
+.++||+|++.+|++.| |+++++|. .+.+.+++++++.+++.... .++
T Consensus 3 i~v~aPaki~nlG~g~~-----vl~~a~d~~~~~~~~~~~~~~~~~i~~~~---------~~~----------------- 51 (296)
T 1h72_C 3 VRVKAPCTSANLGVGFD-----VFGLCLKEPYDVIEVEAIDDKEIIIEVDD---------KNI----------------- 51 (296)
T ss_dssp EEEEEEEEEECTGGGTT-----TEEEEEEEEEEEEEEEEESSSSEEEEESC---------TTS-----------------
T ss_pred EEEEEEeehhccccchh-----hhHHhcccccEEEEEEecCCCeEEEEEcC---------CcC-----------------
Confidence 46899999999999877 99999998 56667777665556665311 111
Q ss_pred cccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248 96 SAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 96 ~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
+...|.||+..++..+.++ |.. .|+++.|.++||.+.||+.
T Consensus 52 -----~~~~~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~iP~g~GLGS 93 (296)
T 1h72_C 52 -----PTDPDKNVAGIVAKKMIDDFNIG--KGVKITIKKGVKAGSGLGS 93 (296)
T ss_dssp -----CCCTTTSHHHHHHHHHHHHTTCC--CEEEEEEECSSCTTSSSCH
T ss_pred -----CCCCccCcHHHHHHHHHHHhCCC--CCeEEEEEcCCCCCCCccH
Confidence 1233999999999988774 443 5999999999999999974
No 21
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=98.66 E-value=4.2e-08 Score=77.69 Aligned_cols=83 Identities=13% Similarity=-0.095 Sum_probs=64.7
Q ss_pred ccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248 21 SPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (144)
Q Consensus 21 APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (144)
||||||| +|+|.| |+...++.++|+++..+.+++. .+++.... ++
T Consensus 5 aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~~---~~~i~~~~----------~~----------------- 54 (275)
T 1uek_A 5 APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPV---SSGLHFQG----------PY----------------- 54 (275)
T ss_dssp EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEE---SSCEEEES----------TT-----------------
T ss_pred ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEEC---cEEEEEcC----------CC-----------------
Confidence 9999999 799999 9999999999999999988872 23232211 11
Q ss_pred cccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248 96 SAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 96 ~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
+ -.||+..++..+.++ +. ..|+++.|.++||.+.||..
T Consensus 55 -----~---~~n~v~~a~~~~~~~~g~--~~g~~i~i~~~IP~g~GLGS 93 (275)
T 1uek_A 55 -----G---RENLAYRAASLYLEAAGQ--PGGVRILLEKRIPEGAGLGG 93 (275)
T ss_dssp -----G---GGSHHHHHHHHHHHHTTC--CCEEEEEEECCSCSSSSSCH
T ss_pred -----C---CccHHHHHHHHHHHHhCC--CCCEEEEEecCCCCcCcccH
Confidence 1 358998888888764 43 35999999999999999964
No 22
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=98.00 E-value=4.8e-05 Score=61.60 Aligned_cols=94 Identities=12% Similarity=-0.043 Sum_probs=70.1
Q ss_pred EEEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248 17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (144)
Q Consensus 17 ~v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (144)
..++||+.||| .|.+.| |+.-..+.++|+.+-.+.++++++..+++..... ..+ +
T Consensus 6 ~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~~~i~~~g~~~--------~~~--p---------- 65 (306)
T 3pyf_A 6 VTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVLSLELVGEGA--------DQL--P---------- 65 (306)
T ss_dssp EEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSSCEEEEESTTG--------GGS--C----------
T ss_pred EEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCCCEEEEeCCCc--------cCC--C----------
Confidence 46899999999 999999 8888888899999888888876554454442110 011 1
Q ss_pred cccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248 92 HASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
.+..|++.-++..+.++ |. ..|+++.|.++||...||..
T Consensus 66 -----------~~~~Nlv~~A~~~l~~~~g~--~~~~~i~i~~~iP~~~GLGs 105 (306)
T 3pyf_A 66 -----------TDERNLAWQAAELMAEHVGR--APDVSIMIDKSIPVAGGMAG 105 (306)
T ss_dssp -----------CSTTSHHHHHHHHHHHHTTC--CCCEEEEEEECSCTTSSSCH
T ss_pred -----------CCCccHHHHHHHHHHHHhCC--CCCeEEEEecCCCCCCCcch
Confidence 12468888888877764 43 24999999999999999964
No 23
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=97.70 E-value=2.1e-05 Score=66.32 Aligned_cols=101 Identities=9% Similarity=-0.011 Sum_probs=62.2
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEe-cCCCeEEEE-eCCCCCceEEecCcccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVP-SGDTEVVLR-SGQFDGEVRFSIDEIQQPRNSVKKHHVVHAS 94 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~-~~d~~v~i~-s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 94 (144)
..++||+|++||+.|.+|+.++++|..-... +++.. +.-.+++|. +.+++ ..++.++...
T Consensus 26 ~~~~Ap~nialik~~gkr~~~~~~P~~dslg--~aL~~~~l~~~~~v~~~~~~~-~~~i~i~G~~--------------- 87 (416)
T 1fi4_A 26 ASVTAPVNIATLKYWGKRDTKLNLPTNSSIS--VTLSQDDLRTLTSAATAPEFE-RDTLWLNGEP--------------- 87 (416)
T ss_dssp EEEEECCEEEEECCCCEEETTTTEESSCEEE--EEBCTTTSCEEEEEEECTTCC-SCBCTTTCCB---------------
T ss_pred EEEEecceEEEEecccccCCceecccccceE--EEEEcCCCcceEEEEEcCCCC-ccEEEECCcc---------------
Confidence 4689999999999999999999888763322 22220 011123333 12222 1222222110
Q ss_pred ccccccCcCChhhHHHHHHHHHHHcCCC-----------CCCcEEEEEEccCCCCCCcc
Q 032248 95 DSAKIKEECKWGNYARGALYALQSRGNN-----------LTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 95 ~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~-----------~~~G~d~~I~g~~p~~~~~~ 142 (144)
... -.++++.++..+++.... ...|+++.+.++||...||.
T Consensus 88 -----~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLG 139 (416)
T 1fi4_A 88 -----HSI--DNERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLA 139 (416)
T ss_dssp -----SSS--SSSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCC
T ss_pred -----ccc--cchHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCcc
Confidence 011 168999999888774211 03699999999999999995
No 24
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=93.01 E-value=0.35 Score=38.48 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=56.1
Q ss_pred EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (144)
Q Consensus 17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (144)
+.+++|++.=-+|. |+-+|-+||+.+..+.+++.. +.++|.....+ .+ +
T Consensus 3 ~~v~vPat~anlG~-----Gfd~lg~al~l~d~v~~~~~~-~~~~i~~~~~~--------~~--p--------------- 51 (298)
T 3hul_A 3 LRIRVPATTANLGP-----GFDSCGLALTLYLTLDIGAEA-DSWYIEHNIGG--------GI--P--------------- 51 (298)
T ss_dssp EEEEEEEEEESCTT-----CTTTEEEEEEEEEEEEEEEEC-SSCEEECCCCT--------TC--C---------------
T ss_pred EEEEEeeceeccCC-----CcchhhhhcccceEEEEEEcC-CceEEEecCcc--------cC--C---------------
Confidence 36899999998888 888899999998888887533 34555432100 11 1
Q ss_pred ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248 97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~ 143 (144)
..+ .|.+.-++..+.+ ...|+++.|.++||...||..
T Consensus 52 ---~~~---~nlv~~a~~~~~~----~~~g~~i~i~~~iP~~~GLGs 88 (298)
T 3hul_A 52 ---HDE---TNVIIETALNLAP----NLTPHHLVMTCDIPPARGLGS 88 (298)
T ss_dssp ---SST---TSHHHHHHHHHCT----TCCCEEEEEEECSCTTSSSSH
T ss_pred ---CCC---CcHHHHHHHHHhc----cCCceEEEEecCCCCCCCccH
Confidence 011 2333333334432 235999999999999999964
No 25
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=64.94 E-value=44 Score=26.99 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=56.2
Q ss_pred EEEccceeecc---ccccc-c----CCceEEeeeec---ceEEEEEEecCC-CeEEEEeCCCCCceEEecCccccccccc
Q 032248 18 VVVSPYRICPL---GAHID-H----QGGTVSAMTIN---KGILLGFVPSGD-TEVVLRSGQFDGEVRFSIDEIQQPRNSV 85 (144)
Q Consensus 18 v~~APGRVnLI---GEH~D-Y----~gG~VLp~AI~---~~~~va~~~~~d-~~v~i~s~~~~~~~~~~l~~l~~~~~~~ 85 (144)
.++||=-+-|+ |-.-| | -+.-.|.+||+ .++.+.++..++ ...++.. ++. ..
T Consensus 7 ~a~A~~Nial~ky~Gkrddg~~~~vP~~dslglaL~~~~l~~~~~v~~~~~~~~~~i~i---~g~------~~------- 70 (380)
T 2hke_A 7 TVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRL---NGT------EV------- 70 (380)
T ss_dssp EEEECCEEEEECCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEE---TTE------EE-------
T ss_pred EEEcCccchhhhhcccccCcccccCCCCCceEEEecCCCCceEEEEEECCCCCccEEEE---CCc------cc-------
Confidence 34455444444 55533 7 77788999999 788887776432 1122221 110 00
Q ss_pred cccccccccccccccCcCChhhHHHHHHHHHHHcCCC--CCCcEEEEEEccCCCCCCcc
Q 032248 86 KKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNN--LTQVKMFLCCHFMNHLFALS 142 (144)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~--~~~G~d~~I~g~~p~~~~~~ 142 (144)
...=.+.+..++..+.+.... ...|+.+.+..+||+..||-
T Consensus 71 ----------------~~~~~~~v~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~aaGLG 113 (380)
T 2hke_A 71 ----------------DVGKTPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMA 113 (380)
T ss_dssp ----------------CGGGCHHHHHHHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCC
T ss_pred ----------------CchhHHHHHHHHHHHHHHhcccCCCCCEEEEEeccCCCccCcc
Confidence 001246777888888764221 03589999999999999984
No 26
>2jmb_A AGR_L_42P, hypothetical protein ATU4866; structural genomics, ontario centre for structural proteomic unknown function; NMR {Agrobacterium tumefaciens str}
Probab=27.44 E-value=16 Score=23.90 Aligned_cols=15 Identities=33% Similarity=0.206 Sum_probs=13.5
Q ss_pred cceeeccccccccCC
Q 032248 22 PYRICPLGAHIDHQG 36 (144)
Q Consensus 22 PGRVnLIGEH~DY~g 36 (144)
-||-.+-|+||||-+
T Consensus 38 qGrY~v~G~~I~Y~D 52 (79)
T 2jmb_A 38 QGRYEVRGAHINYWD 52 (79)
T ss_dssp EEEEEEETTEEEEBC
T ss_pred eEEEEEeCceEEEEc
Confidence 589999999999976
No 27
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=25.08 E-value=95 Score=24.86 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=17.6
Q ss_pred CCcEEEEEEccCCCCCCccC
Q 032248 124 TQVKMFLCCHFMNHLFALSY 143 (144)
Q Consensus 124 ~~G~d~~I~g~~p~~~~~~~ 143 (144)
..|+.+.+..+||.++||..
T Consensus 90 ~~gv~I~~~n~IP~aaGLgS 109 (323)
T 3lto_A 90 VGGFLIQSSNNFPHSSGLAS 109 (323)
T ss_dssp CCCEEEEEEESSCTTTTCCC
T ss_pred CCCEEEEEEeCCCCccCcch
Confidence 35999999999999999953
No 28
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=24.97 E-value=1.5e+02 Score=22.57 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCCCCCcEEEEEEcc
Q 032248 111 GALYALQSRGNNLTQVKMFLCCHF 134 (144)
Q Consensus 111 Gv~~~l~~~g~~~~~G~d~~I~g~ 134 (144)
+.+..+++.....+.|+|+++++.
T Consensus 172 ~f~~~~~~n~~~FPlGvDlil~~~ 195 (210)
T 2fsu_A 172 CILHELTERPHPFPLGIDLILTCG 195 (210)
T ss_dssp HHHHHHHHCCSTTTTSCEEEEEET
T ss_pred HHHHHHHHccccCCCceEEEEEcC
Confidence 556666766666788999999875
Done!