RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032248
(144 letters)
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 83.1 bits (206), Expect = 5e-20
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 23/107 (21%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
V SP R+ +G H D+ G V M IN + EV+L S F E +FS+++
Sbjct: 3 KVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKI--EAEKHGEVILYSEHFGEERKFSLND 60
Query: 78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLT 124
+++E W +Y +G + L+ +
Sbjct: 61 ---------------------LRKENSWIDYVKGIFWVLKESDYEVG 86
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 82.5 bits (204), Expect = 1e-19
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 22/127 (17%)
Query: 1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
+ K +E+ G EV SP RI +G H D+ GG V +I G D +V
Sbjct: 34 LTEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV 92
Query: 61 VLRSGQFD--GEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQS 118
L S F G + F +DE+++ + W NY +G + L+
Sbjct: 93 KLYSENFPKLGVIEFDLDEVEKK-------------------DGELWSNYVKGMIVMLKG 133
Query: 119 RGNNLTQ 125
G + +
Sbjct: 134 AGYEIDK 140
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 75.1 bits (185), Expect = 5e-17
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 20/109 (18%)
Query: 16 VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE----V 71
V +P R+ +G H D+ G V M + +L P D V L + + +
Sbjct: 36 ELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRL 95
Query: 72 RFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
+F + Q+ +W NY +G + +
Sbjct: 96 QFPLPTAQRSLE----------------PGTPRWANYVKGVIQYYPAAP 128
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 55.5 bits (133), Expect = 4e-10
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 13/120 (10%)
Query: 1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
+ + + + + SP R+ +G HID+ +V + I+ +L +
Sbjct: 26 VVDAFFQTYHVKPDFI--ARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNP 83
Query: 61 VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
+ D + ++ + + V +W NY + L+ S
Sbjct: 84 SITLTNADPKFAQRKFDLPLDGSYMAIDPSVS-----------EWSNYFKCGLHVAHSYL 132
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 50.7 bits (121), Expect = 2e-08
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 10 GRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG 69
G + V +P R+ +G HID+ G +V M + + +L+ P + L +
Sbjct: 51 GSIPKFY--VRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLY 108
Query: 70 -EVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNN 122
+ S + IQ K + W NY L +Q
Sbjct: 109 PDFSTSANNIQID------------------KTKPLWHNYFLCGLKGIQEHFGL 144
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 41.9 bits (99), Expect = 2e-05
Identities = 10/62 (16%), Positives = 28/62 (45%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
++ +P ++ G H G +M I+ + + + E++L + + +++E
Sbjct: 7 IIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNE 66
Query: 78 IQ 79
I+
Sbjct: 67 IK 68
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 37.5 bits (86), Expect = 8e-04
Identities = 17/116 (14%), Positives = 38/116 (32%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
+V +P ++ G H G A+ +N L P + +V L + + +
Sbjct: 7 LVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVAT 66
Query: 78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCH 133
+Q + V A ++++ K R + + + +C
Sbjct: 67 LQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRK 122
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 36.4 bits (84), Expect = 0.001
Identities = 9/75 (12%), Positives = 18/75 (24%), Gaps = 6/75 (8%)
Query: 21 SPYRICPLGAHIDHQ------GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFS 74
+P R+ G D GG + TIN + + + + +
Sbjct: 8 APLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCCKSYL 67
Query: 75 IDEIQQPRNSVKKHH 89
+
Sbjct: 68 SMSQLEIDGEASLIK 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.041
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 18/42 (42%)
Query: 77 EIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQS 118
+++ + S+K ++A DSA AL A+++
Sbjct: 21 ALKKLQASLK----LYADDSAP-------------AL-AIKA 44
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 30.5 bits (69), Expect = 0.16
Identities = 11/113 (9%), Positives = 26/113 (23%), Gaps = 29/113 (25%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
S +I +G H G A+ N G +V++ + + D
Sbjct: 8 YGESTGKIILIGEHAVTFGEPAIAVPFNA---------GKIKVLIEALESGNYSSIKSDV 58
Query: 78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFL 130
++ + + N + + +
Sbjct: 59 YDGMLYD--------------------APDHLKSLVNRFVELNNITEPLAVTI 91
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate
complex, periplasm, transesterification, phenol,
bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Length = 571
Score = 27.0 bits (58), Expect = 2.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTI 44
V+V PY PL A +D +S + +
Sbjct: 15 VIVDPYGNAPLTALVDLDSHVISDVKV 41
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 25.3 bits (56), Expect = 8.1
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 23 YRICPLGAHIDHQGGTVSAMT-INKGILLGFVPSGDTEVVLRSGQFDGEV 71
+ + ++ +G M I +GI+ + G L G + GE+
Sbjct: 96 FEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEI 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.410
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,174,555
Number of extensions: 119659
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 16
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)