RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032248
         (144 letters)



>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 225

 Score = 60.7 bits (146), Expect = 9e-13
 Identities = 18/119 (15%), Positives = 39/119 (32%)

Query: 16  VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSI 75
           V +V +P ++   G H    G    A+ +N    L   P  + +V L       +  + +
Sbjct: 5   VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDV 64

Query: 76  DEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHF 134
             +Q       +   V A    ++++  K     R  +            + + +C   
Sbjct: 65  ATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ 123


>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
           [TaxId: 1358]}
          Length = 205

 Score = 54.1 bits (129), Expect = 2e-10
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 8/144 (5%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +  K +E+ G   EV     SP RI  +G H D+ GG V   +I  G         D +V
Sbjct: 6   LTEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV 64

Query: 61  VLRSGQFD--GEVRFSIDEIQQPRN---SVKKHHVVHASDSAKIKEECKWGNYARGALYA 115
            L S  F   G + F +DE+++      S     ++     A  + +  +    +G +  
Sbjct: 65  KLYSENFPKLGVIEFDLDEVEKKDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPT 124

Query: 116 LQSRGNNLTQVKMFLCCHFMNHLF 139
                ++ +     L    ++ LF
Sbjct: 125 ASGLSSSASLE--LLVGVVLDDLF 146


>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 176

 Score = 47.9 bits (113), Expect = 3e-08
 Identities = 17/119 (14%), Positives = 31/119 (26%)

Query: 19  VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEI 78
           V SP R+  +G H D+  G V  M I+   ++        ++       +          
Sbjct: 2   VKSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYDKVQLYSEHFNEEKTFTLDNLTK 61

Query: 79  QQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNH 137
           +       K  +             K        L A  S   +     + +     N 
Sbjct: 62  EGSWIDYVKGVLWVLIQEGYKIGGLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNL 120


>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 215

 Score = 47.9 bits (113), Expect = 5e-08
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 14/110 (12%)

Query: 2   RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVV 61
           R    E  G + E+   V +P R+  +G H D+  G V  M +    +L   P  D  V 
Sbjct: 16  RRAFREEFGAEPELA--VSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVS 73

Query: 62  LRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARG 111
           L +     +    +               +  +  +      +W NY +G
Sbjct: 74  LLTTSEGADEPQRL------------QFPLPTAQRSLEPGTPRWANYVKG 111


>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
          Methanococcus jannaschii [TaxId: 2190]}
          Length = 180

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 10/72 (13%), Positives = 29/72 (40%)

Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
          ++ +P ++   G H    G    +M I+    +    + + E++L     +  +  +++E
Sbjct: 7  IIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNE 66

Query: 78 IQQPRNSVKKHH 89
          I+    +     
Sbjct: 67 IKNINPNNFGDF 78


>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 212

 Score = 25.0 bits (54), Expect = 3.4
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 30  AHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHH 89
           +  D Q  T+ A  I  G+ +GF    + E V      + E+   +  + Q  + +K   
Sbjct: 54  SKADQQYSTLLAQEIANGVTIGFRMVNEKERVC-----NVEILPLLTSMAQNLDRIKARF 108


>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 218

 Score = 23.7 bits (50), Expect = 9.9
 Identities = 7/98 (7%), Positives = 22/98 (22%), Gaps = 1/98 (1%)

Query: 7   EMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQ 66
            +   +A +                 +        +        G +P         +  
Sbjct: 120 SLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVPVTSAPVTAF 179

Query: 67  FDGEVRFSIDEIQQP-RNSVKKHHVVHASDSAKIKEEC 103
           + G +   ++        +  KH  + A     ++   
Sbjct: 180 YRGCMTLEVNRRLLDLDEAAYKHSDITAHSCPPVEPAA 217


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 523,039
Number of extensions: 21990
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 9
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)