Query 032249
Match_columns 144
No_of_seqs 154 out of 1014
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 11:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4747 Two-component phosphor 99.8 7.2E-18 1.6E-22 117.2 12.1 135 5-141 7-141 (150)
2 COG2198 ArcB FOG: HPt domain [ 99.7 8.5E-16 1.8E-20 105.5 13.4 111 22-135 5-118 (122)
3 PF01627 Hpt: Hpt domain; Int 99.6 3.7E-15 7.9E-20 96.0 10.1 83 45-129 1-89 (90)
4 smart00073 HPT Histidine Phosp 99.5 9.4E-14 2E-18 89.4 6.4 84 45-131 2-85 (87)
5 cd00088 HPT Histidine Phosphot 99.4 2.3E-12 4.9E-17 84.3 7.6 86 44-129 2-91 (94)
6 TIGR02956 TMAO_torS TMAO reduc 99.4 7.1E-12 1.5E-16 110.4 12.9 106 22-134 863-968 (968)
7 PRK11091 aerobic respiration c 99.2 1.5E-09 3.3E-14 94.1 15.8 113 21-138 664-776 (779)
8 PRK10618 phosphotransfer inter 99.1 4.9E-10 1.1E-14 98.9 10.9 82 45-128 811-892 (894)
9 PRK11466 hybrid sensory histid 98.8 1.7E-07 3.7E-12 82.5 14.4 99 3-106 787-886 (914)
10 PRK11107 hybrid sensory histid 98.7 8.2E-07 1.8E-11 78.0 16.9 97 38-136 821-918 (919)
11 COG0643 CheA Chemotaxis protei 98.3 5.9E-06 1.3E-10 71.7 11.3 93 41-133 4-105 (716)
12 PRK10547 chemotaxis protein Ch 98.2 2.5E-05 5.4E-10 67.4 11.1 86 44-129 4-98 (670)
13 PRK09959 hybrid sensory histid 97.8 0.0011 2.3E-08 60.5 15.4 96 38-135 1097-1193(1197)
14 PRK15347 two component system 96.9 0.0088 1.9E-07 52.9 9.6 76 47-127 839-914 (921)
15 TIGR02302 aProt_lowcomp conser 78.7 18 0.00039 32.8 8.8 84 39-128 521-604 (851)
16 PF07743 HSCB_C: HSCB C-termin 73.4 18 0.0004 22.1 7.1 45 38-84 24-68 (78)
17 PRK03578 hscB co-chaperone Hsc 72.8 34 0.00073 24.9 7.8 12 71-82 115-126 (176)
18 KOG4514 Uncharacterized conser 71.6 38 0.00083 25.0 13.4 93 21-123 120-214 (222)
19 PF08900 DUF1845: Domain of un 71.6 29 0.00062 26.1 7.3 51 85-136 33-83 (217)
20 TIGR03042 PS_II_psbQ_bact phot 66.8 42 0.00092 23.6 9.3 48 20-82 27-74 (142)
21 PF13779 DUF4175: Domain of un 65.9 42 0.00092 30.4 8.2 84 39-127 490-573 (820)
22 cd08323 CARD_APAF1 Caspase act 65.8 32 0.0007 22.0 6.6 68 10-81 16-83 (86)
23 TIGR00714 hscB Fe-S protein as 65.4 46 0.001 23.6 7.5 56 70-134 97-152 (157)
24 TIGR00465 ilvC ketol-acid redu 61.8 60 0.0013 25.8 7.7 73 22-110 173-246 (314)
25 PF14615 Rsa3: Ribosome-assemb 61.2 24 0.00051 20.0 3.9 41 46-89 6-46 (47)
26 TIGR03761 ICE_PFL4669 integrat 60.3 66 0.0014 24.3 7.3 50 85-135 31-80 (216)
27 PF09280 XPC-binding: XPC-bind 59.9 11 0.00023 22.4 2.4 39 24-63 6-44 (59)
28 PF14357 DUF4404: Domain of un 59.7 11 0.00024 24.1 2.6 30 6-35 2-31 (85)
29 PF00435 Spectrin: Spectrin re 58.9 40 0.00086 20.7 6.9 68 71-139 32-104 (105)
30 PF05757 PsbQ: Oxygen evolving 53.1 83 0.0018 23.5 6.7 77 50-128 104-198 (202)
31 KOG1104 Nuclear cap-binding co 51.9 1.8E+02 0.0039 26.1 11.1 104 27-139 85-207 (759)
32 PRK13916 plasmid segregation p 48.9 37 0.0008 21.8 3.7 30 25-54 18-47 (97)
33 KOG1573 Aldehyde reductase [Ge 45.6 52 0.0011 24.0 4.4 63 25-93 76-138 (204)
34 COG3046 Uncharacterized protei 43.5 1.5E+02 0.0033 24.9 7.3 67 39-111 226-292 (505)
35 PRK10093 primosomal replicatio 40.2 1.4E+02 0.0031 21.7 6.1 65 4-82 11-75 (171)
36 PF08657 DASH_Spc34: DASH comp 39.9 1.8E+02 0.0038 22.6 7.7 70 72-141 133-206 (259)
37 PF03993 DUF349: Domain of Unk 38.8 63 0.0014 19.4 3.7 22 44-65 8-29 (77)
38 PF04722 Ssu72: Ssu72-like pro 38.7 72 0.0016 23.7 4.4 18 86-103 145-162 (195)
39 PRK01773 hscB co-chaperone Hsc 38.4 1.5E+02 0.0033 21.4 8.4 43 70-120 111-153 (173)
40 PF10826 DUF2551: Protein of u 37.9 34 0.00074 21.9 2.3 46 39-93 9-54 (83)
41 KOG2424 Protein involved in tr 37.8 78 0.0017 23.4 4.4 35 86-125 147-181 (195)
42 PF04840 Vps16_C: Vps16, C-ter 33.6 2.5E+02 0.0053 22.4 10.6 91 21-122 174-265 (319)
43 COG2991 Uncharacterized protei 33.1 10 0.00023 23.5 -0.6 20 80-99 27-46 (77)
44 PF02344 Myc-LZ: Myc leucine z 32.5 42 0.00091 17.4 1.7 14 3-16 17-30 (32)
45 PF02845 CUE: CUE domain; Int 32.4 85 0.0018 16.7 3.4 33 26-58 3-35 (42)
46 PTZ00431 pyrroline carboxylate 32.3 1.3E+02 0.0029 22.8 5.2 73 6-90 136-209 (260)
47 KOG4747 Two-component phosphor 31.3 2E+02 0.0042 20.5 6.8 60 38-100 11-70 (150)
48 KOG1672 ATP binding protein [P 31.1 91 0.002 23.4 3.9 52 1-66 4-55 (211)
49 TIGR00601 rad23 UV excision re 29.1 78 0.0017 26.0 3.6 39 24-63 253-291 (378)
50 PRK01356 hscB co-chaperone Hsc 28.8 2.2E+02 0.0048 20.4 7.6 26 96-121 124-149 (166)
51 TIGR00984 3a0801s03tim44 mitoc 28.8 1.3E+02 0.0028 24.8 4.8 64 27-109 230-294 (378)
52 KOG0994 Extracellular matrix g 28.2 5.7E+02 0.012 24.9 11.4 47 48-98 1531-1578(1758)
53 PF14748 P5CR_dimer: Pyrroline 28.1 1.4E+02 0.0029 19.6 4.1 56 23-90 1-57 (107)
54 cd07625 BAR_Vps17p The Bin/Amp 27.0 2.9E+02 0.0062 21.0 9.9 59 70-129 136-196 (230)
55 PF09686 Plasmid_RAQPRD: Plasm 26.9 92 0.002 19.7 2.9 38 102-139 31-68 (81)
56 PF14931 IFT20: Intraflagellar 26.8 2.1E+02 0.0045 19.5 12.3 103 21-142 12-114 (120)
57 KOG2280 Vacuolar assembly/sort 26.8 2.7E+02 0.0058 25.3 6.5 92 21-123 681-773 (829)
58 PRK12491 pyrroline-5-carboxyla 26.6 2.4E+02 0.0052 21.7 5.8 72 7-90 144-216 (272)
59 PF06367 Drf_FH3: Diaphanous F 26.3 2.5E+02 0.0054 20.1 7.0 92 26-127 75-171 (197)
60 PF05794 Tcp11: T-complex prot 26.2 3.6E+02 0.0078 22.1 7.1 10 71-80 82-91 (441)
61 PRK08818 prephenate dehydrogen 25.5 3.3E+02 0.0071 22.2 6.6 40 42-87 228-267 (370)
62 PF05396 Phage_T7_Capsid: Phag 25.3 2.3E+02 0.005 19.5 6.3 44 38-83 44-87 (123)
63 PF07304 SRA1: Steroid recepto 24.6 2.6E+02 0.0057 19.8 7.3 85 47-136 63-147 (157)
64 cd08326 CARD_CASP9 Caspase act 24.2 1.9E+02 0.0042 18.2 6.0 56 10-67 18-73 (84)
65 PF05153 DUF706: Family of unk 24.0 1.3E+02 0.0029 23.2 3.8 59 25-89 42-100 (253)
66 KOG0994 Extracellular matrix g 22.8 7.2E+02 0.016 24.3 9.3 52 54-105 1473-1524(1758)
67 PRK05014 hscB co-chaperone Hsc 21.7 3.1E+02 0.0068 19.6 7.7 24 96-119 128-151 (171)
68 smart00388 HisKA His Kinase A 21.3 1.5E+02 0.0033 15.8 7.3 54 75-136 6-59 (66)
69 PLN02956 PSII-Q subunit 20.8 3.6E+02 0.0077 19.9 9.8 76 47-127 85-181 (185)
70 smart00546 CUE Domain that may 20.8 1.5E+02 0.0033 15.7 3.5 25 26-50 4-28 (43)
71 TIGR03687 pupylate_cterm ubiqu 20.7 51 0.0011 17.2 0.7 17 26-42 7-23 (33)
72 PF05781 MRVI1: MRVI1 protein; 20.2 5.8E+02 0.013 22.2 10.2 62 71-141 263-325 (538)
No 1
>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]
Probab=99.77 E-value=7.2e-18 Score=117.25 Aligned_cols=135 Identities=52% Similarity=0.876 Sum_probs=129.2
Q ss_pred HHHHHHHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhh
Q 032249 5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKG 84 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG 84 (144)
+++..+-.+..|.++++++| ++|.+|.++.++..|+|+.+++..|+++..+.+..++.++.. ..|+..+....|.+||
T Consensus 7 ~~q~~~~d~~~sl~~qgild-~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~-~~d~k~~~~~~hqlkg 84 (150)
T KOG4747|consen 7 SMQRDVSDYTKSLFDQGILD-SQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDC-ERDFKKLGSHVHQLKG 84 (150)
T ss_pred HHHHHHHHHHHHHHHHHhhH-HHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHccC
Confidence 67888899999999999999 999999999999999999999999999999999999999985 3599999999999999
Q ss_pred hhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 032249 85 SCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQA 141 (144)
Q Consensus 85 ss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~ 141 (144)
++..+||.+....|..+...|..++.+.+...+++++-++..++..|+.+++.++|.
T Consensus 85 ssssIGa~kvk~~c~~~~~~~~~~n~egcvr~l~~v~ie~~~lkkkL~~~f~L~rq~ 141 (150)
T KOG4747|consen 85 SSSSIGALKVKKVCVGFNEFCEAGNIEGCVRCLQQVKIEYSLLKKKLETLFQLERQE 141 (150)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhccchhHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999884
No 2
>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]
Probab=99.70 E-value=8.5e-16 Score=105.51 Aligned_cols=111 Identities=22% Similarity=0.426 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHH
Q 032249 22 YLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQF 101 (144)
Q Consensus 22 ~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~l 101 (144)
.++...+..+..+.+ ++++++.+++..|+++.+..+..+..++. ++|+..+.+.+|+|||+|+++|+.+|..+|.+|
T Consensus 5 ~~~~~~~~~~~~~~g-~~~~~~~~ll~~f~~~~~~~l~~l~~~l~--~~d~~~~~~~aH~lkg~a~~lg~~~L~~~~~~l 81 (122)
T COG2198 5 PLSTSDIELLVRLIG-GDPDLLRELLAMFLEEAPAQLEQLESALA--AEDNDGLARLAHRLKGSAASLGLPALAQLCQQL 81 (122)
T ss_pred ccccccHHHHHHHcC-CChHHHHHHHHHHHHHhHHHHHHHHHHHh--cCCcHHHHHHHHHHHhHHHhccHHHHHHHHHHH
Confidence 334444455555554 78999999999999999999999999996 579999999999999999999999999999999
Q ss_pred HHHHHc-CChhhHHHHHHHHHHH--HHHHHHHHHHHH
Q 032249 102 REYCNA-GNAEGCSRSFQLIKQE--YETLRRRLESYF 135 (144)
Q Consensus 102 E~~~~~-~~~~~~~~~~~~l~~~--~~~~~~~L~~~l 135 (144)
|..++. ...+.+..++..+..+ +..+...+..+.
T Consensus 82 E~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 118 (122)
T COG2198 82 EDALRSGASLEELEELIAELKDELQLDVLALELLTYL 118 (122)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 999998 5577889999999998 666666665554
No 3
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=99.64 E-value=3.7e-15 Score=95.98 Aligned_cols=83 Identities=22% Similarity=0.466 Sum_probs=69.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHh---hCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhh---HHHHHH
Q 032249 45 EVVSLFYSDSARLIQNIEQTL---SNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG---CSRSFQ 118 (144)
Q Consensus 45 ~ll~~Fl~~~~~~l~~L~~a~---~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~---~~~~~~ 118 (144)
+++..|+++.+..+..|+.++ . .+|++.+++.+|+|||+++++|+.++..+|..+|..++.++... +...+.
T Consensus 1 ell~~f~~~~~~~~~~l~~~~~~~~--~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~ 78 (90)
T PF01627_consen 1 ELLDIFLEEAPEDLEQLEQALQALE--QEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQLLD 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSH--HCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh--HhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 478999999999999999999 5 36999999999999999999999999999999999999887665 444444
Q ss_pred HHHHHHHHHHH
Q 032249 119 LIKQEYETLRR 129 (144)
Q Consensus 119 ~l~~~~~~~~~ 129 (144)
.+...+.++.+
T Consensus 79 ~l~~~l~~l~~ 89 (90)
T PF01627_consen 79 ELEAMLEQLRQ 89 (90)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 44444444433
No 4
>smart00073 HPT Histidine Phosphotransfer domain. Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.
Probab=99.48 E-value=9.4e-14 Score=89.40 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=69.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 032249 45 EVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEY 124 (144)
Q Consensus 45 ~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~ 124 (144)
+++..|+++.+..+..|..++. .+|+..+.+.+|+|||+++++|+..|..+|..+|..++...... ....+.+...+
T Consensus 2 e~~~~f~~~~~~~l~~l~~~~~--~~~~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~~~~-~~~~~~l~~~~ 78 (87)
T smart00073 2 EELAEFLQSLEEGLLELEKALD--AQDVNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAARSGE-VELTPDLLDLL 78 (87)
T ss_pred hHHHHHHHHHHHHHHHHHhCcC--HhHHHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHHcCC-CCCCHHHHHHH
Confidence 5789999999999999999885 57999999999999999999999999999999999888643322 24456666666
Q ss_pred HHHHHHH
Q 032249 125 ETLRRRL 131 (144)
Q Consensus 125 ~~~~~~L 131 (144)
..+...|
T Consensus 79 ~~~~~~l 85 (87)
T smart00073 79 LELVDVL 85 (87)
T ss_pred HHHHHHH
Confidence 6665554
No 5
>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E. coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i
Probab=99.38 E-value=2.3e-12 Score=84.32 Aligned_cols=86 Identities=22% Similarity=0.422 Sum_probs=66.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhC--CCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCCh--hhHHHHHHH
Q 032249 44 EEVVSLFYSDSARLIQNIEQTLSN--RPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNA--EGCSRSFQL 119 (144)
Q Consensus 44 ~~ll~~Fl~~~~~~l~~L~~a~~~--~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~--~~~~~~~~~ 119 (144)
.+++..|+++.+..+..|...+.. ..+|+..+...+|+|||+++++|+..|..+|..+|..++.+.. +........
T Consensus 2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~d~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~ 81 (94)
T cd00088 2 EELLELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALRDGLEVTPELIDL 81 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 467999999999999999999951 0369999999999999999999999999999999999987432 222333444
Q ss_pred HHHHHHHHHH
Q 032249 120 IKQEYETLRR 129 (144)
Q Consensus 120 l~~~~~~~~~ 129 (144)
+...+..+..
T Consensus 82 ~~~~~d~l~~ 91 (94)
T cd00088 82 LLDALDALKA 91 (94)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 6
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.38 E-value=7.1e-12 Score=110.36 Aligned_cols=106 Identities=25% Similarity=0.425 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHH
Q 032249 22 YLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQF 101 (144)
Q Consensus 22 ~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~l 101 (144)
++|...+...... .+++.+.+++..|+++.+..+..|..++. .+|+..++..+|+|||+++++|+.+|..+|..|
T Consensus 863 ll~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~l~~~~~--~~d~~~~~~~~H~lkg~~~~~g~~~l~~~~~~l 937 (968)
T TIGR02956 863 LLDEEQLQQDIEV---LGVEKVRQLVALFKTSSAEQLEELSAARA--VDDDAQIKKLAHKLKGSAGSLGLTQLTQLCQQL 937 (968)
T ss_pred hcCHHHHHHHHHh---cCcHHHHHHHHHHHHhhHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 6777776655444 46778999999999999999999999996 479999999999999999999999999999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 032249 102 REYCNAGNAEGCSRSFQLIKQEYETLRRRLESY 134 (144)
Q Consensus 102 E~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~ 134 (144)
|..++.+++. ...+..++..|.++..+|++|
T Consensus 938 e~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~ 968 (968)
T TIGR02956 938 EKQGKTGALE--LSDIDEIKQAWQASKTALDQW 968 (968)
T ss_pred HHhcccCCcc--hhHHHHHHHHHHHHHHHHHhC
Confidence 9999988773 467899999999999998875
No 7
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.17 E-value=1.5e-09 Score=94.14 Aligned_cols=113 Identities=16% Similarity=0.261 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHH
Q 032249 21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQ 100 (144)
Q Consensus 21 ~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~ 100 (144)
..+|.+.+..+.+.. +...+...+..|.+..+..+..+..++. .+|+..+...+|+|||+++++|+..|..+|..
T Consensus 664 ~~l~~~~l~~~~~~~---g~~~~~~~l~~~~~~~~~~~~~l~~~l~--~~d~~~~~~~ah~l~g~~~~~g~~~l~~~~~~ 738 (779)
T PRK11091 664 ALLDIPMLEQYVELV---GPKLITDSLAVFEKMMPGYLSVLDSNLT--ARDQKGIVEEAHKIKGAAGSVGLRHLQQLAQQ 738 (779)
T ss_pred cccCHHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 467777777766653 4567788899999999999999999996 57999999999999999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032249 101 FREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMV 138 (144)
Q Consensus 101 lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~ 138 (144)
+|.....+.++.+..++.++..+|....+.++.|+...
T Consensus 739 le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 776 (779)
T PRK11091 739 IQSPDLPAWWDNVQDWVEELKNEWRHDVEVLKAWLAQA 776 (779)
T ss_pred HhCcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988888888889999999999999999999998653
No 8
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.12 E-value=4.9e-10 Score=98.91 Aligned_cols=82 Identities=16% Similarity=0.256 Sum_probs=74.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 032249 45 EVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEY 124 (144)
Q Consensus 45 ~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~ 124 (144)
.++..|+++.+.++..|..++. .+|+..+++.+|+|||+++++|+..+..+|..||+.++.++...+...+.+|...+
T Consensus 811 ~~~~lF~~t~~~di~~L~~~~~--~~D~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~~~i~~~i~~id~~v 888 (894)
T PRK10618 811 DYYALFVDTVPDDVKRLYTEAA--TSDFASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDEPGIENYISDIDSFV 888 (894)
T ss_pred hHHHHHHHhhHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 3568999999999999999996 48999999999999999999999999999999999999999988888888887776
Q ss_pred HHHH
Q 032249 125 ETLR 128 (144)
Q Consensus 125 ~~~~ 128 (144)
.++.
T Consensus 889 ~~ll 892 (894)
T PRK10618 889 KSLL 892 (894)
T ss_pred HHHh
Confidence 6553
No 9
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=98.80 E-value=1.7e-07 Score=82.50 Aligned_cols=99 Identities=23% Similarity=0.335 Sum_probs=73.9
Q ss_pred hhHHHHHHHHhHhccC-CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 032249 3 SNQLQHQVLYMRRSLF-DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ 81 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 81 (144)
.+.|...+..+..... ..+.++...+...... .++..+.+++..|..+....+..++.+.. .+|+..++.++|+
T Consensus 787 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~ah~ 861 (914)
T PRK11466 787 REVLGQLLAHYLQLQVNNDQPLDVSQLNEDAAL---MGTEKIHEWLALFKQHALPLLDEIDIARA--SQDSEKIKRAAHQ 861 (914)
T ss_pred HHHHHHHHHHHhhhccccccCCCHHHHHHHHHh---cCHHHHHHHHHHHHHhhHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence 3455555544443221 2234555554443322 34566788999999999999999999886 4799999999999
Q ss_pred hhhhhhhhcHHHHHHHHHHHHHHHH
Q 032249 82 FKGSCSSIGAKKVKDACSQFREYCN 106 (144)
Q Consensus 82 LKGss~~lGa~~L~~~~~~lE~~~~ 106 (144)
|||+++++|+..+..+|.++|+.+.
T Consensus 862 lkg~~~~lg~~~l~~~~~~le~~~~ 886 (914)
T PRK11466 862 LKSSCSSLGMRQASQACAQLEQQPL 886 (914)
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999998754
No 10
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.74 E-value=8.2e-07 Score=78.04 Aligned_cols=97 Identities=20% Similarity=0.402 Sum_probs=83.9
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCC-hhhHHHH
Q 032249 38 ANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN-AEGCSRS 116 (144)
Q Consensus 38 ~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~-~~~~~~~ 116 (144)
++++...+++..|.+..+..+..+..++. ..|+..+...+|++||+++++|+.++..+|..+|..++.+. ...+...
T Consensus 821 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~~ 898 (919)
T PRK11107 821 GKPDLARDMLQMLLDFLPEVRNKVEEALA--GEDPEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSGTSVEDLEPE 898 (919)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence 56788899999999999999999999996 47999999999999999999999999999999999998764 4566677
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032249 117 FQLIKQEYETLRRRLESYFQ 136 (144)
Q Consensus 117 ~~~l~~~~~~~~~~L~~~l~ 136 (144)
+..+..++.++...+++|++
T Consensus 899 ~~~~~~~~~~~~~~~~~~~~ 918 (919)
T PRK11107 899 LLELLDEMENVARAAKKVLS 918 (919)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 77777777777777777753
No 11
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.35 E-value=5.9e-06 Score=71.66 Aligned_cols=93 Identities=22% Similarity=0.380 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhCC---CCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HcCChh
Q 032249 41 NFVEEVVSLFYSDSARLIQNIEQTLSNR---PVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNAE 111 (144)
Q Consensus 41 ~~~~~ll~~Fl~~~~~~l~~L~~a~~~~---~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~ 111 (144)
....+++..|+.+.++.++.|+..+-.- ..| ...+.+.+|+|||+||++|+..+..+|..+|... +.+...
T Consensus 4 ~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~ld~~r~g~~~ 83 (716)
T COG0643 4 MDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLLDALRNGELE 83 (716)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHHHHHhcCCcc
Confidence 4467789999999999999999755221 123 4679999999999999999999999999999854 556554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032249 112 GCSRSFQLIKQEYETLRRRLES 133 (144)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~L~~ 133 (144)
--..++..+..+...+...+..
T Consensus 84 ~~~~l~d~~l~~~D~l~~~~~~ 105 (716)
T COG0643 84 LTSELLDLLLEALDALEEMLDA 105 (716)
T ss_pred CcHHHHHHHhhhhHHHHHHHHh
Confidence 4456666666666666665555
No 12
>PRK10547 chemotaxis protein CheA; Provisional
Probab=98.16 E-value=2.5e-05 Score=67.44 Aligned_cols=86 Identities=14% Similarity=0.310 Sum_probs=61.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhC---CCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH---cCChhhHH
Q 032249 44 EEVVSLFYSDSARLIQNIEQTLSN---RPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN---AGNAEGCS 114 (144)
Q Consensus 44 ~~ll~~Fl~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~---~~~~~~~~ 114 (144)
.+++..|++++.+.++.|+..+-. ...| ...+.+.+|+|||+|+++|+..+..+|..+|.... .+...--.
T Consensus 4 ~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld~vR~g~l~~~~ 83 (670)
T PRK10547 4 SDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLDEARRGEMQLNT 83 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHHHHHCCCCCCCH
Confidence 467899999999999888886622 1123 46789999999999999999999999999998664 45433223
Q ss_pred HHHHHHHHHHHHHHH
Q 032249 115 RSFQLIKQEYETLRR 129 (144)
Q Consensus 115 ~~~~~l~~~~~~~~~ 129 (144)
..+.-+...+..+..
T Consensus 84 ~~~dlll~~~D~l~~ 98 (670)
T PRK10547 84 DIINLFLETKDIMQE 98 (670)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 13
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.81 E-value=0.0011 Score=60.51 Aligned_cols=96 Identities=10% Similarity=0.219 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCC-hhhHHHH
Q 032249 38 ANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN-AEGCSRS 116 (144)
Q Consensus 38 ~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~-~~~~~~~ 116 (144)
.+...+.+++..+......++..+..+.. .+|...+...+|+++|+++.+|+..|...|.++|......+ ...+...
T Consensus 1097 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~~~~~~l~~~ 1174 (1197)
T PRK09959 1097 NDLQLMQEILMTFQHETHKDLPAAFHALE--AGDNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQL 1174 (1197)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcCCchHHHHHH
Confidence 56677889999999999999988887775 47999999999999999999999999999999998887654 3455556
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032249 117 FQLIKQEYETLRRRLESYF 135 (144)
Q Consensus 117 ~~~l~~~~~~~~~~L~~~l 135 (144)
+..+...+......+..|+
T Consensus 1175 ~~~~~~~~~~~~~~~~~~~ 1193 (1197)
T PRK09959 1175 LNSVKEHIAELDQEIAVFC 1193 (1197)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666655555555554
No 14
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.86 E-value=0.0088 Score=52.92 Aligned_cols=76 Identities=21% Similarity=0.334 Sum_probs=56.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 032249 47 VSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYET 126 (144)
Q Consensus 47 l~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~ 126 (144)
...+.+.....+..+..+++. .| .+...+|++||+++.+|+..+...|.++|..++.+...... .+..++..+..
T Consensus 839 ~~~~~~~l~~~~~~~~~~~~~--~~--~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~ 913 (921)
T PRK15347 839 NSKLYQSLLLLLAQIEQAVEN--QE--VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGEILSLE-ELTDLRELIHA 913 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--HH--HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHH
Confidence 445555666777888888852 34 89999999999999999999999999999999876654322 24444444443
Q ss_pred H
Q 032249 127 L 127 (144)
Q Consensus 127 ~ 127 (144)
+
T Consensus 914 ~ 914 (921)
T PRK15347 914 L 914 (921)
T ss_pred H
Confidence 3
No 15
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=78.67 E-value=18 Score=32.83 Aligned_cols=84 Identities=8% Similarity=0.205 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 032249 39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQ 118 (144)
Q Consensus 39 ~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~ 118 (144)
+.+=+.++...+-+-+.+.+..|.+.... +.+-.. -..-+.+.+++-..|......||+..++|+.++...++.
T Consensus 521 sdeEI~~Lm~eLR~Am~~ym~~LAeq~~~-~~~~~~-----~~~~~~~~~l~~~dLq~Mmd~ieela~~G~~~~A~qlL~ 594 (851)
T TIGR02302 521 SDEEIKQLTDKLRAAMQTYMRQLAQQLRN-NPQQLA-----RPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLLS 594 (851)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhh-Cccccc-----ccCCccccccCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445666666655555555555543321 111000 111234578999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 032249 119 LIKQEYETLR 128 (144)
Q Consensus 119 ~l~~~~~~~~ 128 (144)
+|..-++.++
T Consensus 595 qlq~mmenlq 604 (851)
T TIGR02302 595 QLQQMMNNLQ 604 (851)
T ss_pred HHHHHHHHHh
Confidence 8888877765
No 16
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=73.39 E-value=18 Score=22.14 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhh
Q 032249 38 ANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKG 84 (144)
Q Consensus 38 ~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG 84 (144)
++.+-+..+....-......+..|..+++ .+||..++..+++||=
T Consensus 24 ~~~~~L~~l~~~~~~~~~~~~~~l~~~f~--~~d~~~A~~~~~kLky 68 (78)
T PF07743_consen 24 DDEAELEELKKEIEERIKELIKELAEAFD--AKDWEEAKEALRKLKY 68 (78)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCcHHHHHHHHHHHHH
Confidence 34456667777777777777778888885 4788888888888753
No 17
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=72.82 E-value=34 Score=24.88 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=5.4
Q ss_pred CHHHHHHHHHhh
Q 032249 71 DFSRLDDILHQF 82 (144)
Q Consensus 71 D~~~l~~~aH~L 82 (144)
|...+..+...+
T Consensus 115 d~~~L~~l~~e~ 126 (176)
T PRK03578 115 DVDALDALLAEL 126 (176)
T ss_pred CHHHHHHHHHHH
Confidence 444444444444
No 18
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.61 E-value=38 Score=25.02 Aligned_cols=93 Identities=10% Similarity=0.114 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhh--hhhcHHHHHHHH
Q 032249 21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSC--SSIGAKKVKDAC 98 (144)
Q Consensus 21 ~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss--~~lGa~~L~~~~ 98 (144)
|.||+.+|.+|.-.. .+ +..-++..+++.-..+..|..... .+....+..+.++--.. ..=|...|..-|
T Consensus 120 p~vDp~VL~DlE~~~----~e-l~~~vD~llr~lgg~lh~is~lt~---~~vq~yr~aV~kl~d~~DanIK~~Y~lLAk~ 191 (222)
T KOG4514|consen 120 PEVDPSVLSDLELEA----QE-LASSVDNLLRNLGGLLHSISSLTA---DNVQVYRNAVNKLTDTLDANIKCQYQLLAKA 191 (222)
T ss_pred CCCChHHHHHHHHHH----HH-HHHHHHHHHHHhhhHHHHHHHhhh---hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 678999999987542 22 233366666766666666655432 35555666666554332 122344455555
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHH
Q 032249 99 SQFREYCNAGNAEGCSRSFQLIKQE 123 (144)
Q Consensus 99 ~~lE~~~~~~~~~~~~~~~~~l~~~ 123 (144)
.++++..+ ....+...+.+|+..
T Consensus 192 EEi~ksm~--pv~~La~qir~irRl 214 (222)
T KOG4514|consen 192 EEITKSMK--PVEQLAQQIRQIRRL 214 (222)
T ss_pred HHHHHHHh--hHHHHHHHHHHHHHH
Confidence 55555433 344444445444443
No 19
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=71.55 E-value=29 Score=26.10 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=34.7
Q ss_pred hhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032249 85 SCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQ 136 (144)
Q Consensus 85 ss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~ 136 (144)
..+.+|+..+...+..+.+.+.+.|+- ....+-.|++.+..+...++...+
T Consensus 33 ~~~I~Gm~~~~~~~~~i~~~a~~DdPy-AD~~L~~iEe~i~~~~~~l~~~~~ 83 (217)
T PF08900_consen 33 KPAIIGMPGFASRLNRIWRDARQDDPY-ADWWLLRIEEKINEARQELQELIA 83 (217)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999987753 223445555555555555544443
No 20
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=66.77 E-value=42 Score=23.65 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 032249 20 QGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQF 82 (144)
Q Consensus 20 ~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L 82 (144)
+|-.-+..+.+|+.... . +....+++.+++..+++ +||..++...|.-
T Consensus 27 p~tysp~~l~~i~~~~~------------~-i~~~~~r~~eLk~lI~k--k~W~~vrn~irgp 74 (142)
T TIGR03042 27 PPTYSPAQLAQIQRQAE------------G-IEAAKDRLPELASLVAK--EDWVFTRNLIHGP 74 (142)
T ss_pred CCCCCHHHHHHHHHHHH------------H-HHHHHHhhHHHHHHHhh--cchHHHHHHHhcc
Confidence 34555666666554421 1 23456678889999974 7999999988853
No 21
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=65.92 E-value=42 Score=30.39 Aligned_cols=84 Identities=7% Similarity=0.144 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 032249 39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQ 118 (144)
Q Consensus 39 ~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~ 118 (144)
+.+=+.++...+-+-+.+.+..|.+-... +.+- - ..+.--+.+.+++-..|.....+||+.+++|+.++...+++
T Consensus 490 s~eEI~rLm~eLR~A~~~ym~~LAeq~~~-~~~~--~--~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~ 564 (820)
T PF13779_consen 490 SDEEIARLMQELREAMQDYMQALAEQAQR-NPQQ--Q--DQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLE 564 (820)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhHh-Cccc--c--cCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555665555555555555554421 1110 0 11112466778999999999999999999999999888888
Q ss_pred HHHHHHHHH
Q 032249 119 LIKQEYETL 127 (144)
Q Consensus 119 ~l~~~~~~~ 127 (144)
++..-++.+
T Consensus 565 qlq~mmenm 573 (820)
T PF13779_consen 565 QLQQMMENM 573 (820)
T ss_pred HHHHHHHhc
Confidence 887777654
No 22
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=65.75 E-value=32 Score=21.95 Aligned_cols=68 Identities=10% Similarity=0.217 Sum_probs=55.5
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 032249 10 VLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ 81 (144)
Q Consensus 10 ~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 81 (144)
+..++..+.+.++++.+..+.+.... ...+-...++.....-.+.-+..+..++.. ..++.++.+.|.
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~--t~~~qa~~Lld~L~trG~~Af~~F~~aL~~--~~~~~La~lL~~ 83 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKA--TQKEKAVMLINMILTKDNHAYVSFYNALLH--EGYKDLALLLHD 83 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCChHHHHHHhc
Confidence 45678888899999999999998853 457778899999999999999999999963 357778877764
No 23
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=65.40 E-value=46 Score=23.61 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 032249 70 VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESY 134 (144)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~ 134 (144)
.|...+..+.+.++ ..+..+...|+.+...++++.+...+..++= |.++...++.+
T Consensus 97 ~d~~~L~~l~~~~~--------~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky-~~kl~~~i~~~ 152 (157)
T TIGR00714 97 KDEARLESFIKRVK--------KMFQTRHQLLVEQLDNQTWAAAADYTRKLRF-LDKLRSSAEQL 152 (157)
T ss_pred CCHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 35555555555443 2344455555555555666555554444433 34444444443
No 24
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=61.83 E-value=60 Score=25.76 Aligned_cols=73 Identities=8% Similarity=0.015 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhhhhhhhhhcHHHHHHHHHH
Q 032249 22 YLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDF-SRLDDILHQFKGSCSSIGAKKVKDACSQ 100 (144)
Q Consensus 22 ~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~-~~l~~~aH~LKGss~~lGa~~L~~~~~~ 100 (144)
.++.+.|+..-.+.+ +.|.|+..+++.. ++.+ -+. ......+|.+||++..+.-..+..+...
T Consensus 173 e~~edl~~~~t~l~G-s~pa~v~~~~eal--------------v~~G-~~~e~A~~~~~~~~~g~~~l~~e~g~~~l~~~ 236 (314)
T TIGR00465 173 ETESDLFGEQAVLCG-GLTALIKAGFDTL--------------VEAG-YQPELAYFETVHELKLIVDLIYEGGITGMRDR 236 (314)
T ss_pred hhhHHhcCcchhHHh-HHHHHHHHHHHHH--------------HHcC-CCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 555566665555554 6788855554333 2211 233 4566779999999999966666555555
Q ss_pred HHHHHHcCCh
Q 032249 101 FREYCNAGNA 110 (144)
Q Consensus 101 lE~~~~~~~~ 110 (144)
+=.-++-|+.
T Consensus 237 Vsstaeyg~~ 246 (314)
T TIGR00465 237 ISNTAEYGAL 246 (314)
T ss_pred cCCHHHcCcc
Confidence 5555555554
No 25
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=61.18 E-value=24 Score=20.04 Aligned_cols=41 Identities=2% Similarity=0.056 Sum_probs=28.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhh
Q 032249 46 VVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSI 89 (144)
Q Consensus 46 ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~l 89 (144)
.+....++..++|.+|+++-. -.-..+.-++|.|+.++.++
T Consensus 6 yl~~~t~efgdDLd~lR~~~d---F~~~sl~~Li~aL~~G~~~F 46 (47)
T PF14615_consen 6 YLQRLTDEFGDDLDELRKAPD---FTDKSLPLLIDALQQGTDMF 46 (47)
T ss_pred HHHHHHHHHHHHHHHHhcCCC---CCchhHHHHHHHHHhccccc
Confidence 355556666777888886442 34467899999999887653
No 26
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=60.26 E-value=66 Score=24.29 Aligned_cols=50 Identities=8% Similarity=0.153 Sum_probs=33.2
Q ss_pred hhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032249 85 SCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYF 135 (144)
Q Consensus 85 ss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l 135 (144)
-.+++|+..+...+..|.+.+...|+-. .-.+-.+++.+..+...++...
T Consensus 31 ~~~IiGl~~f~s~~~~i~~~a~~DdPyA-D~~Ll~~E~~l~~~~~~l~~~~ 80 (216)
T TIGR03761 31 KPGIIGMPGFISRLNRINQASEQDDPYA-DWALLRIEEKLLSARQEMQALL 80 (216)
T ss_pred CCCCcCcHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999877532 2334444444444444444433
No 27
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=59.86 E-value=11 Score=22.44 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=31.3
Q ss_pred CHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHH
Q 032249 24 DSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQ 63 (144)
Q Consensus 24 D~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~ 63 (144)
+...|..++++.. .+|+++..++...-.+.+..+..+.+
T Consensus 6 ~~Pqf~~lR~~vq-~NP~lL~~lLqql~~~nP~l~q~I~~ 44 (59)
T PF09280_consen 6 NNPQFQQLRQLVQ-QNPQLLPPLLQQLGQSNPQLLQLIQQ 44 (59)
T ss_dssp TSHHHHHHHHHHH-C-GGGHHHHHHHHHCCSHHHHHHHHH
T ss_pred cChHHHHHHHHHH-HCHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4578889999887 78999999998888888887777764
No 28
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=59.69 E-value=11 Score=24.06 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=21.0
Q ss_pred HHHHHHHhHhccCCCCCCCHHHHHHHHccc
Q 032249 6 LQHQVLYMRRSLFDQGYLDSEQLIQLEDLQ 35 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~ 35 (144)
|++.|..-..-..+.+.+|...-..|.++.
T Consensus 2 L~~~L~~L~~eL~~~~~ld~~~~~~L~~l~ 31 (85)
T PF14357_consen 2 LQELLEKLHQELEQNPPLDEETRAELSSLD 31 (85)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 556666666666777888887777776664
No 29
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=58.88 E-value=40 Score=20.69 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=42.6
Q ss_pred CHHHHHHHHHhhhhhhhhhc-----HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032249 71 DFSRLDDILHQFKGSCSSIG-----AKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVK 139 (144)
Q Consensus 71 D~~~l~~~aH~LKGss~~lG-----a~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 139 (144)
|...+....-.++.--..+. ...+...+..| ......+.+.+...+..|...|..+...+..+...+.
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQL-IDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 55555555555444443332 33445555556 2222345677888899999999999999888776554
No 30
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=53.15 E-value=83 Score=23.51 Aligned_cols=77 Identities=10% Similarity=0.146 Sum_probs=47.6
Q ss_pred HHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHh--------hhhhhhhhc----------HHHHHHHHHHHHHHHHcCChh
Q 032249 50 FYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ--------FKGSCSSIG----------AKKVKDACSQFREYCNAGNAE 111 (144)
Q Consensus 50 Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~--------LKGss~~lG----------a~~L~~~~~~lE~~~~~~~~~ 111 (144)
=+.+..+.|..++..+++ ..|..++...|. |+......+ +..|..-...|..+++..+..
T Consensus 104 Rik~sa~~L~~lk~lIdk--~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~~lf~~ie~LD~Aar~K~~~ 181 (202)
T PF05757_consen 104 RIKESAKRLLSLKELIDK--KSWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLANKLFDNIEELDYAARSKDVP 181 (202)
T ss_dssp HHHHHHHHHCCCHHHHHT--T-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 356777888889999974 689999888876 222222232 244666666677777777766
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032249 112 GCSRSFQLIKQEYETLR 128 (144)
Q Consensus 112 ~~~~~~~~l~~~~~~~~ 128 (144)
.....+......+..+.
T Consensus 182 ~a~~~Y~~t~~~Ldevl 198 (202)
T PF05757_consen 182 EAEKYYADTVKALDEVL 198 (202)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655555555554443
No 31
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=51.87 E-value=1.8e+02 Score=26.14 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=76.1
Q ss_pred HHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhh--hhhcHHHHHHHHHHHHHH
Q 032249 27 QLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSC--SSIGAKKVKDACSQFREY 104 (144)
Q Consensus 27 ~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss--~~lGa~~L~~~~~~lE~~ 104 (144)
+...|-.+..-.+..|..+++..|+.+.. ..++ .++|.+++-.+|.|---+ ..+-+..|..+...+=.+
T Consensus 85 ~yaTLvgllN~kn~~fg~~~v~~~~~~~q-------~sl~--~~~~n~ar~llrfL~dL~~~~vl~~~sli~l~esl~~~ 155 (759)
T KOG1104|consen 85 AYATLVGLLNLKNFNFGGEFVEYMIEELQ-------ESLK--SGNWNEARYLLRFLSDLSNCHVLQADSLINLFESLLDA 155 (759)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHH-------HHhh--cCChHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHH
Confidence 34444444444678888888888877664 5564 479999999999998777 888899998888888777
Q ss_pred HHcCChhhH-----------------HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032249 105 CNAGNAEGC-----------------SRSFQLIKQEYETLRRRLESYFQMVK 139 (144)
Q Consensus 105 ~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~L~~~l~~~~ 139 (144)
+...+.+.+ .++-+..+.+++++...++.|+...+
T Consensus 156 ~~e~~~Pqvr~D~~v~~vLs~lPw~g~el~e~~~~~~e~ll~~ie~Yl~~R~ 207 (759)
T KOG1104|consen 156 AIEENVPQVRRDYYVYCVLSSLPWFGRELNEKKPTEMEELLVYIEIYLKKRK 207 (759)
T ss_pred HHhhcCcchhhhHHHHHHHhccchhhhhhcccchHHHHHHHHHHHHHHHHhc
Confidence 776555432 23334557788999999999987654
No 32
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=48.86 E-value=37 Score=21.81 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHHHHHHccccCCChHHHHHHHHHHHHhH
Q 032249 25 SEQLIQLEDLQDDANPNFVEEVVSLFYSDS 54 (144)
Q Consensus 25 ~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~ 54 (144)
...|+-|..+-++.-+.++++++..|+++.
T Consensus 18 ~~iF~FL~~~P~GT~~~~iR~~L~rYI~~~ 47 (97)
T PRK13916 18 PQIFDFLENVPRGTKTAHIREALRRYIEEI 47 (97)
T ss_pred HHHHHHHHHCCCCCccHHHHHHHHHHHHhc
Confidence 356788888887777999999999999875
No 33
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=45.57 E-value=52 Score=23.96 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=41.0
Q ss_pred HHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHH
Q 032249 25 SEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKK 93 (144)
Q Consensus 25 ~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~ 93 (144)
++-++-|..+.++.||++=.-=+...++.+ +.++... ++.||-.+..+.|-|--.-+.-|..+
T Consensus 76 ~ec~ell~~~vDESDPDlDepni~Ha~QtA----E~iR~~~--Pd~dWlHLtaLiHDLGKvl~f~GepQ 138 (204)
T KOG1573|consen 76 WECCELLNEVVDESDPDLDEPNIQHALQTA----EAIRKDY--PDEDWLHLTALIHDLGKVLAFGGEPQ 138 (204)
T ss_pred HHHHHHHHhhhcccCCCCchHHHHHHHHHH----HHHHHhC--CCccHHHHHHHHHHHHHHHHhcCCcc
Confidence 345566677777778776443344333333 5677767 67899999999998866555555443
No 34
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=43.53 E-value=1.5e+02 Score=24.94 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChh
Q 032249 39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAE 111 (144)
Q Consensus 39 ~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~ 111 (144)
.++-....++.|+++.-..+..-+.+... .|+. +-|++-+.+-|+|+-.=.++|...+.+-+.++.+
T Consensus 226 tr~~A~~~L~~Fi~~~L~nFG~yQDam~~--d~~~----L~HSllS~alNigLL~PleVi~Aa~~Ay~~g~ip 292 (505)
T COG3046 226 TRTQALRALKHFIADRLPNFGSYQDAMSA--DDPH----LWHSLLSFALNIGLLTPLEVIRAALKAYREGDIP 292 (505)
T ss_pred CHHHHHHHHHHHHHHhhhcCCcHHHHHhc--CCch----hHHHHHHHHhhccCCCHHHHHHHHHHhhccCCCc
Confidence 56667888999999988888888888853 3433 8899999999999999999999999999987765
No 35
>PRK10093 primosomal replication protein N''; Provisional
Probab=40.19 E-value=1.4e+02 Score=21.68 Aligned_cols=65 Identities=3% Similarity=0.142 Sum_probs=42.5
Q ss_pred hHHHHHHHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 032249 4 NQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQF 82 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L 82 (144)
.+|.+++..+..-....|..|...|.. .+ ..+..|+.+....+..|..++. .++...+.-++-+|
T Consensus 11 ~~L~~~~~p~~~~~~~~~rFD~~LF~~-------~s-----~~L~~yl~Ei~~~l~qL~~~~~--~~~~~~~~flaEkL 75 (171)
T PRK10093 11 ATLRQRCAPLAQHATLSARFDRHLFQT-------RS-----TLLQAYLDEAGDNLAALRHAVE--QQQLPQVAWLAEHL 75 (171)
T ss_pred HHHHHHhhhhccccccccchhHHHHcc-------CC-----cchHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHH
Confidence 345555555554555557777655542 11 1388899999999999999885 46776666555444
No 36
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=39.93 E-value=1.8e+02 Score=22.60 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhhhhhhh----cHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 032249 72 FSRLDDILHQFKGSCSSI----GAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQA 141 (144)
Q Consensus 72 ~~~l~~~aH~LKGss~~l----Ga~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~ 141 (144)
....++.++.+..++-++ |--..-.+|..+|..|..=....+.+.+..+...|..+...+..|-+....+
T Consensus 133 ~~~~~~~avA~vlG~~m~~e~~~d~dvevLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ 206 (259)
T PF08657_consen 133 RKQRRNTAVALVLGGVMHEEIVEDVDVEVLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQ 206 (259)
T ss_pred hHHHHHHHHHHhccCcccccccccCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665555333 5556678888889888865555788888888888888888887775544333
No 37
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=38.77 E-value=63 Score=19.36 Aligned_cols=22 Identities=5% Similarity=0.241 Sum_probs=11.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh
Q 032249 44 EEVVSLFYSDSARLIQNIEQTL 65 (144)
Q Consensus 44 ~~ll~~Fl~~~~~~l~~L~~a~ 65 (144)
..+...|..-.......+....
T Consensus 8 ~~a~~~~~~~~~~~~~~~~~~~ 29 (77)
T PF03993_consen 8 RAACDAFFDRRKEFFEEQDAER 29 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444
No 38
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=38.74 E-value=72 Score=23.74 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.5
Q ss_pred hhhhcHHHHHHHHHHHHH
Q 032249 86 CSSIGAKKVKDACSQFRE 103 (144)
Q Consensus 86 s~~lGa~~L~~~~~~lE~ 103 (144)
-+.+|+..+.++|..|+.
T Consensus 145 eA~~Ga~~ileLc~~l~~ 162 (195)
T PF04722_consen 145 EATIGAFLILELCQMLEE 162 (195)
T ss_dssp HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578999999999999996
No 39
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=38.44 E-value=1.5e+02 Score=21.41 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 032249 70 VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120 (144)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l 120 (144)
.|...+..+...++ ..+..+...|+.+...++++.+...+..+
T Consensus 111 ~d~~~L~~l~~~v~--------~~~~~~~~~l~~~~~~~d~~~A~~~~~rL 153 (173)
T PRK01773 111 QDEDALTAFSKEIK--------QEQQAILTELSTALNSQQWQQASQINDRL 153 (173)
T ss_pred CCHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46666666655544 23445555566666666666554444433
No 40
>PF10826 DUF2551: Protein of unknown function (DUF2551) ; InterPro: IPR020501 This entry contains proteins with no known function.
Probab=37.87 E-value=34 Score=21.86 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHH
Q 032249 39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKK 93 (144)
Q Consensus 39 ~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~ 93 (144)
...+-+.++..|++.-.-.+..+-+.+.+ + -.=+.+|.|+++|...
T Consensus 9 ~~GiRr~vL~~fl~~~~~T~~di~e~L~~--~-------f~vs~~~VasMVG~i~ 54 (83)
T PF10826_consen 9 KDGIRRAVLKLFLKGKKFTTDDIYERLKE--K-------FDVSYRGVASMVGLIH 54 (83)
T ss_pred CccHHHHHHHHHHhCCCeeHHHHHHHHHH--H-------cCchHHHHHHHHHHHH
Confidence 34467888999999988888888877752 1 2336788899998753
No 41
>KOG2424 consensus Protein involved in transcription start site selection [Transcription]
Probab=37.84 E-value=78 Score=23.38 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=24.1
Q ss_pred hhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 032249 86 CSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYE 125 (144)
Q Consensus 86 s~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~ 125 (144)
-+++||--+.++|..|+. ++ +.+...+..|...|+
T Consensus 147 dA~~Gaf~I~elcq~l~~--~s---~d~Ed~ideil~~~e 181 (195)
T KOG2424|consen 147 DATLGAFLILELCQCLQA--QS---DDLEDNIDEILLEFE 181 (195)
T ss_pred hhhhhHHHHHHHHHHHHh--cc---ccHHHHHHHHHHHHH
Confidence 478999999999999986 33 334445555555544
No 42
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=33.57 E-value=2.5e+02 Score=22.37 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHccccCCChHHHHHHHHHHH-HhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHH
Q 032249 21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFY-SDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACS 99 (144)
Q Consensus 21 ~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl-~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~ 99 (144)
.+++.++-+.+..+...|......++...|- .+-.-..-.++..++ .++|+++...+..=| .-+|..++.+.|-
T Consensus 174 ~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~--~~~w~eL~~fa~skK---sPIGyepFv~~~~ 248 (319)
T PF04840_consen 174 NFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAE--NKDWDELEKFAKSKK---SPIGYEPFVEACL 248 (319)
T ss_pred chhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCCHHHHHHHHhCCC---CCCChHHHHHHHH
Confidence 3455555555555544466777788888883 333334455666664 589999999987644 3599999999986
Q ss_pred HHHHHHHcCChhhHHHHHHHHHH
Q 032249 100 QFREYCNAGNAEGCSRSFQLIKQ 122 (144)
Q Consensus 100 ~lE~~~~~~~~~~~~~~~~~l~~ 122 (144)
. .|....+...+..+..
T Consensus 249 ~------~~~~~eA~~yI~k~~~ 265 (319)
T PF04840_consen 249 K------YGNKKEASKYIPKIPD 265 (319)
T ss_pred H------CCCHHHHHHHHHhCCh
Confidence 4 2444455555555444
No 43
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.12 E-value=10 Score=23.55 Aligned_cols=20 Identities=35% Similarity=0.778 Sum_probs=17.3
Q ss_pred HhhhhhhhhhcHHHHHHHHH
Q 032249 80 HQFKGSCSSIGAKKVKDACS 99 (144)
Q Consensus 80 H~LKGss~~lGa~~L~~~~~ 99 (144)
-.+|||+|-+++..+...|.
T Consensus 27 k~I~GSCGGi~alGi~K~Cd 46 (77)
T COG2991 27 KSIKGSCGGIAALGIEKVCD 46 (77)
T ss_pred cccccccccHHhhccchhcC
Confidence 36899999999999888887
No 44
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=32.48 E-value=42 Score=17.37 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=9.2
Q ss_pred hhHHHHHHHHhHhc
Q 032249 3 SNQLQHQVLYMRRS 16 (144)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (144)
++||+++|.-+.+|
T Consensus 17 ~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 17 REQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcc
Confidence 57899998877765
No 45
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=32.40 E-value=85 Score=16.72 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=16.5
Q ss_pred HHHHHHHccccCCChHHHHHHHHHHHHhHHHHH
Q 032249 26 EQLIQLEDLQDDANPNFVEEVVSLFYSDSARLI 58 (144)
Q Consensus 26 ~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l 58 (144)
+.+..|.++.+.-+++.+...+..+-.+.+..+
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai 35 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAI 35 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 345666666665555555555444443333333
No 46
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=32.28 E-value=1.3e+02 Score=22.79 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=52.5
Q ss_pred HHHHHHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhhhh
Q 032249 6 LQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDF-SRLDDILHQFKG 84 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~-~~l~~~aH~LKG 84 (144)
-.+.+..++++.-..-.++.+.++..-.+.+ .+|.|+..+++.|.+-... .-+ +. ...+-.++.++|
T Consensus 136 ~~~~v~~l~~~~G~~~~v~E~~~d~~ta~~g-sgPA~~~~~~~al~~~~v~------~Gl-----~~~~a~~l~~~~~~G 203 (260)
T PTZ00431 136 DKKKVIDIFSACGIIQEIKEKDMDIATAISG-CGPAYVFLFIESLIDAGVK------NGL-----NRDVSKNLVLQTILG 203 (260)
T ss_pred HHHHHHHHHHhCCcEEEEChHHcchhhhhcC-CHHHHHHHHHHHHHHHHHH------cCC-----CHHHHHHHHHHHHHH
Confidence 4567888888888888899998988888765 6799977777666544322 122 33 345567789999
Q ss_pred hhhhhc
Q 032249 85 SCSSIG 90 (144)
Q Consensus 85 ss~~lG 90 (144)
++.++-
T Consensus 204 ~a~ll~ 209 (260)
T PTZ00431 204 SVHMVK 209 (260)
T ss_pred HHHHHH
Confidence 988764
No 47
>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]
Probab=31.27 E-value=2e+02 Score=20.53 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHH
Q 032249 38 ANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQ 100 (144)
Q Consensus 38 ~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~ 100 (144)
...++-..++..++.+ ..+.+|.+..+.. ...-...-..|.+++++..+|-.+++--|..
T Consensus 11 ~~~d~~~sl~~qgild--~qF~qlq~lqD~~-~p~fv~ev~~~fF~~s~~~i~~~r~ald~~~ 70 (150)
T KOG4747|consen 11 DVSDYTKSLFDQGILD--SQFLQLQELQDDS-SPDFVEEVVGLFFEDSERLINNLRLALDCER 70 (150)
T ss_pred HHHHHHHHHHHHHhhH--HHHHHHHHHhccc-CccHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3456777778888887 5788888888753 3334556678999999999999999988885
No 48
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=31.11 E-value=91 Score=23.38 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 032249 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLS 66 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~ 66 (144)
++++++..+|++-.++..+. || +.++.|..+.+ ++.+.+ -++++++|..+.+
T Consensus 4 ~~~~~~~~qvl~~~ka~~~~--~d-~e~~~le~~d~-~dle~l----------r~qRl~~lkk~~~ 55 (211)
T KOG1672|consen 4 NAAKILEKQVLTAAKAVEEQ--LD-EELDKLENMDE-DDLEVL----------REQRLEQLKKEQE 55 (211)
T ss_pred hhhhhhhHHHHHHHHHHHHH--Hh-HHHHHHhcCCc-hhHHHh----------HHHHHHHHHHHHH
Confidence 35788999999999999888 88 45666666643 443332 4456777766664
No 49
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.09 E-value=78 Score=25.97 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=31.4
Q ss_pred CHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHH
Q 032249 24 DSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQ 63 (144)
Q Consensus 24 D~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~ 63 (144)
+..+|.+||++.. .+|+++..|+...-...++.++.|.+
T Consensus 253 ~~pqf~~lR~~vq-~NP~~L~~lLqql~~~nP~l~q~I~~ 291 (378)
T TIGR00601 253 NQPQFQQLRQVVQ-QNPQLLPPLLQQIGQENPQLLQQISQ 291 (378)
T ss_pred cCHHHHHHHHHHH-HCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 3467999999886 78999888888888888887777654
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=28.83 E-value=2.2e+02 Score=20.36 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHH
Q 032249 96 DACSQFREYCNAGNAEGCSRSFQLIK 121 (144)
Q Consensus 96 ~~~~~lE~~~~~~~~~~~~~~~~~l~ 121 (144)
.+...|+.+...++++.+...+..++
T Consensus 124 ~~~~~l~~~f~~~d~~~A~~~~~~L~ 149 (166)
T PRK01356 124 NEIDSLKQAFEEQNLSDATIKTSKLK 149 (166)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44444555555556655555554443
No 51
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=28.77 E-value=1.3e+02 Score=24.80 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=43.1
Q ss_pred HHHHHHccccCCChHHHHHHHHHHHHhHHHH-HHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH
Q 032249 27 QLIQLEDLQDDANPNFVEEVVSLFYSDSARL-IQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC 105 (144)
Q Consensus 27 ~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~ 105 (144)
++.+++.+ ||.| =+..|+..+... +..+-.|+. .+|++.|+.+++. ......|..+++..
T Consensus 230 ~l~eIk~~----DPsF---d~~~Fl~gar~aI~p~ILeAf~--kGD~e~LK~~lse----------~vy~~f~a~I~qr~ 290 (378)
T TIGR00984 230 VLTEFKKI----DPTF---DKEHFLRFLREYIVPEILEAYV--KGDLEVLKSWCSE----------APFSVYATVVKEYK 290 (378)
T ss_pred HHHHHHHh----CCCC---CHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHhhCH----------HHHHHHHHHHHHHH
Confidence 44444444 4555 267889988888 688888886 3799999887765 34455666666666
Q ss_pred HcCC
Q 032249 106 NAGN 109 (144)
Q Consensus 106 ~~~~ 109 (144)
.+|-
T Consensus 291 ~~G~ 294 (378)
T TIGR00984 291 KMGV 294 (378)
T ss_pred HCCC
Confidence 5554
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.17 E-value=5.7e+02 Score=24.90 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhh-cHHHHHHHH
Q 032249 48 SLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSI-GAKKVKDAC 98 (144)
Q Consensus 48 ~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~l-Ga~~L~~~~ 98 (144)
+..+.....++...+...+ +....+..||.+|+++-.| ++...+..+
T Consensus 1531 d~IL~~T~~di~ra~~L~s----~A~~a~~~A~~v~~~ae~V~eaL~~Ad~A 1578 (1758)
T KOG0994|consen 1531 DAILSRTKGDIARAENLQS----EAERARSRAEDVKGQAEDVVEALEEADVA 1578 (1758)
T ss_pred HHHHHhhhhhHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444332 4566788899999987665 333444333
No 53
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=28.12 E-value=1.4e+02 Score=19.60 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=33.8
Q ss_pred CCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhhhhhhhhhc
Q 032249 23 LDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDF-SRLDDILHQFKGSCSSIG 90 (144)
Q Consensus 23 lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~-~~l~~~aH~LKGss~~lG 90 (144)
|+.+.|+.+-.+.+ ..|.|+..+++.+.+-... .-+ +. ...+-.++.++|++..+-
T Consensus 1 V~E~~~d~~talsG-sgpA~~~~~~eal~~a~v~------~Gl-----~~~~A~~lv~~t~~G~a~ll~ 57 (107)
T PF14748_consen 1 VDEDQFDAATALSG-SGPAYFFLFIEALADAAVA------QGL-----PREEARKLVAQTFIGAAKLLE 57 (107)
T ss_dssp -SGGGHHHHHHHCT-THHHHHHHHHHHHHHHHHH------TT-------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhHHHHHhc-cHHHHHHHHHHHHHHHHHH------cCC-----CHHHHHHHHHHHHHHHHHHHH
Confidence 35566777766654 6799977766666554322 222 33 334556788888888775
No 54
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.97 E-value=2.9e+02 Score=21.05 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCC--hhhHHHHHHHHHHHHHHHHH
Q 032249 70 VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN--AEGCSRSFQLIKQEYETLRR 129 (144)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 129 (144)
.+...-+..+.+||++ +.+--.++-++...|+.+-+..+ ...+...-..+..++.+...
T Consensus 136 ~~~~~K~~~~~rlk~s-~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~ 196 (230)
T cd07625 136 QNTKSKQEAARRLKAK-RDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTD 196 (230)
T ss_pred HHHHHHHHHHHHHhcC-CCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778889999998 66667788888888887665422 12333444444444444333
No 55
>PF09686 Plasmid_RAQPRD: Plasmid protein of unknown function (Plasmid_RAQPRD); InterPro: IPR019110 This entry identifies a family of proteins, around 100 amino acids in length, that include a predicted signal sequence and a perfectly conserved motif, RAQPRD, towards the C terminus. They are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae pv. tomato str. DC3000. The function of these proteins is unknown.
Probab=26.89 E-value=92 Score=19.74 Aligned_cols=38 Identities=11% Similarity=0.285 Sum_probs=27.8
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032249 102 REYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVK 139 (144)
Q Consensus 102 E~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 139 (144)
+..+.+.....+.-.+..+...+.+++.-|+.|+.+.+
T Consensus 31 ~~~a~~~~~~R~~FdY~rl~~Dl~~ir~GI~~YL~psR 68 (81)
T PF09686_consen 31 EAQANQSPSSRYYFDYPRLRADLERIRAGIQDYLNPSR 68 (81)
T ss_pred HHhccCCCCCceeecHHHHHHHHHHHHHHHHHHcCccc
Confidence 33333333345667789999999999999999998765
No 56
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=26.84 E-value=2.1e+02 Score=19.46 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHH
Q 032249 21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQ 100 (144)
Q Consensus 21 ~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~ 100 (144)
-++|+++.+.-..+.+ .-.+|+.. +..|-.-....+..+..... .-..++|| .+|+..+...+..
T Consensus 12 RVldp~~~~~t~~Lk~-ec~~F~~k-i~~F~~iv~~~~~~~~~~A~---------~VE~eKlk----AIG~RN~l~s~~k 76 (120)
T PF14931_consen 12 RVLDPEKADQTQELKE-ECKEFVEK-ISEFQKIVKGFIEILDELAK---------RVENEKLK----AIGARNLLKSEAK 76 (120)
T ss_pred eecChHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHH---------HHHHHHHH----HHHhHHHHHHHHH
Confidence 5788888887777754 33455444 33443333333333332211 11223433 4566655554421
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 032249 101 FREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAK 142 (144)
Q Consensus 101 lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~~ 142 (144)
-+......+...|..-+.++++++...++....+.++.
T Consensus 77 ----~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~ 114 (120)
T PF14931_consen 77 ----QREAQQQQLQALIAEKKMELERLRSEYESLQKVEQEQN 114 (120)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223446677888888999999999999888877664
No 57
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.83 E-value=2.7e+02 Score=25.30 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHccccCCChHHHHHHHHHHH-HhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHH
Q 032249 21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFY-SDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACS 99 (144)
Q Consensus 21 ~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl-~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~ 99 (144)
..+|.++=+.+..+.-.|...-+.++...|- .|-.-..=++....+ .+||+++.+.|-+-|+ -+|..++.+.|.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~--~~kweeLekfAkskks---PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD--IKKWEELEKFAKSKKS---PIGYLPFVEACL 755 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh--hhhHHHHHHHHhccCC---CCCchhHHHHHH
Confidence 3555555455555554466666777777773 233333344555454 4799999999988776 899999999886
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHH
Q 032249 100 QFREYCNAGNAEGCSRSFQLIKQE 123 (144)
Q Consensus 100 ~lE~~~~~~~~~~~~~~~~~l~~~ 123 (144)
. +++.+++...+..+...
T Consensus 756 ~------~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 756 K------QGNKDEAKKYIPRVGGL 773 (829)
T ss_pred h------cccHHHHhhhhhccCCh
Confidence 4 45555555555555443
No 58
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=26.61 E-value=2.4e+02 Score=21.68 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=46.1
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHH-HHHHhhhhh
Q 032249 7 QHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLD-DILHQFKGS 85 (144)
Q Consensus 7 ~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~-~~aH~LKGs 85 (144)
++.+...-.+.-..-.++.+.|+.+-.+.+ .+|.|+..+++.+.+-... .- -+.+..+ -.++.++|+
T Consensus 144 ~~~v~~lf~~~G~~~~~~E~~~d~~talsg-sgPAf~~~~~eal~~a~v~------~G-----l~~~~A~~l~~~t~~G~ 211 (272)
T PRK12491 144 IKEVLNIFNIFGQTEVVNEKLMDVVTSISG-SSPAYVYMFIEAMADAAVL------GG-----MPRKQAYKFAAQAVLGS 211 (272)
T ss_pred HHHHHHHHHcCCCEEEEcHHHhhhHHHhcc-CcHHHHHHHHHHHHHHHHH------cC-----CCHHHHHHHHHHHHHHH
Confidence 344555555555567788899999888876 7899977766655544321 11 2444444 455668888
Q ss_pred hhhhc
Q 032249 86 CSSIG 90 (144)
Q Consensus 86 s~~lG 90 (144)
+..+-
T Consensus 212 a~ll~ 216 (272)
T PRK12491 212 AKMVL 216 (272)
T ss_pred HHHHH
Confidence 87764
No 59
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.28 E-value=2.5e+02 Score=20.10 Aligned_cols=92 Identities=16% Similarity=0.239 Sum_probs=45.6
Q ss_pred HHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCC---CCCHHHHHHHH-HhhhhhhhhhcHHHHHHHHHHH
Q 032249 26 EQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNR---PVDFSRLDDIL-HQFKGSCSSIGAKKVKDACSQF 101 (144)
Q Consensus 26 ~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~---~~D~~~l~~~a-H~LKGss~~lGa~~L~~~~~~l 101 (144)
.++..|+.. .++. +..-+..|.+....+...+....+.. -.|...+.... .+++++.. .... ...+
T Consensus 75 ~il~~l~~~---~~~~-L~~Qi~~f~~~~~~D~~el~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~~~~--~siL 144 (197)
T PF06367_consen 75 DILEKLRNL---EDDD-LQEQIDIFEENEEEDEEELLERFDSKTVDLSDPQELFEALLEKLKDTEA----EDYF--LSIL 144 (197)
T ss_dssp HHHHHHTTS-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHTTSTT----HHHH--HHHH
T ss_pred HHHHHHHhc---chHH-HHHHHHHHHHHHHhhHHHHHHhhcccccccccHHHHHHHHHHHHhCccc----HHHH--HHHH
Confidence 345555555 4455 45558999999888888886644210 12433333332 44444333 2222 3333
Q ss_pred HHHHHc-CChhhHHHHHHHHHHHHHHH
Q 032249 102 REYCNA-GNAEGCSRSFQLIKQEYETL 127 (144)
Q Consensus 102 E~~~~~-~~~~~~~~~~~~l~~~~~~~ 127 (144)
.....- .+.......+..+...+..+
T Consensus 145 q~ll~i~~~~~~~~~~~~lie~~v~~i 171 (197)
T PF06367_consen 145 QHLLLIRQDEEERSKYWQLIESLVSQI 171 (197)
T ss_dssp HHHTTS-TTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 333332 44445555556555555444
No 60
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=26.16 E-value=3.6e+02 Score=22.06 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=4.0
Q ss_pred CHHHHHHHHH
Q 032249 71 DFSRLDDILH 80 (144)
Q Consensus 71 D~~~l~~~aH 80 (144)
|.+-+.+.++
T Consensus 82 D~~li~Qq~~ 91 (441)
T PF05794_consen 82 DLELIRQQLE 91 (441)
T ss_pred ChHHHHHHHh
Confidence 3444444433
No 61
>PRK08818 prephenate dehydrogenase; Provisional
Probab=25.48 E-value=3.3e+02 Score=22.23 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhh
Q 032249 42 FVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCS 87 (144)
Q Consensus 42 ~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~ 87 (144)
.+.+.++.|. +.+..++..+. .+|+..+.+..|++.-+-.
T Consensus 228 ~i~~~l~~~~----~~L~~l~~~i~--~~D~~~~~~~~~~f~~a~~ 267 (370)
T PRK08818 228 YVGEMLDRLL----AQLQELRALVA--QGDDAARARFRAQFLHANA 267 (370)
T ss_pred HHHHHHHHHH----HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHh
Confidence 4444444444 45567777775 3798888887666554433
No 62
>PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein; InterPro: IPR008768 This family contains the capsid assembly protein (scaffolding protein) of bacteriophage T7.; GO: 0019069 viral capsid assembly
Probab=25.35 E-value=2.3e+02 Score=19.46 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=26.6
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhh
Q 032249 38 ANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFK 83 (144)
Q Consensus 38 ~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (144)
|+++-+..++.-.-...+..++.+..+++ ++|...++.++-.+.
T Consensus 44 GG~e~f~~i~~~~~~~~~~~~ea~~~Ai~--~~dla~vk~~vn~~~ 87 (123)
T PF05396_consen 44 GGEEGFAAIMSHAEANSPAAAEAFNEAIE--SGDLATVKAAVNLAG 87 (123)
T ss_pred cCHHHHHHHHHHHHhCCHHHHHHHHHHHH--hCCHHHHHHHHHHHH
Confidence 45555566555555566777777777775 357666666554443
No 63
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=24.58 E-value=2.6e+02 Score=19.79 Aligned_cols=85 Identities=12% Similarity=0.169 Sum_probs=41.3
Q ss_pred HHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 032249 47 VSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYET 126 (144)
Q Consensus 47 l~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~ 126 (144)
-...++|..++|.-|...++. +++.. ....+|.--+..|-... +..+.+|-...-....+++..++-.|++-+..
T Consensus 63 ~kr~~~D~~KRL~iLfd~ln~--g~Ls~--~v~~~L~~L~~aL~~~d-~~~A~~Ih~~L~t~h~~E~~~WmvGVKRLI~~ 137 (157)
T PF07304_consen 63 KKRVVDDIEKRLNILFDHLNN--GKLSK--PVVDKLHQLAQALQARD-YDAADEIHVDLMTDHVDECGNWMVGVKRLIAM 137 (157)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH--T-S-H--HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHSSHHHHTTTHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhc--CCCCH--HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccHHHhhhHHHHHHHHHHH
Confidence 344567888888888887752 34321 13333333344444444 33334444444445556666666666666666
Q ss_pred HHHHHHHHHH
Q 032249 127 LRRRLESYFQ 136 (144)
Q Consensus 127 ~~~~L~~~l~ 136 (144)
.+..-..-+.
T Consensus 138 ~r~~~~~~~~ 147 (157)
T PF07304_consen 138 ARNLPPELLE 147 (157)
T ss_dssp HHHHH-----
T ss_pred HHhcCccccc
Confidence 5554444333
No 64
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.18 E-value=1.9e+02 Score=18.17 Aligned_cols=56 Identities=7% Similarity=0.187 Sum_probs=44.6
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhC
Q 032249 10 VLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSN 67 (144)
Q Consensus 10 ~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~ 67 (144)
+...+..+.+.++++.+..+.+.... ...+-...++....+-.+.-+..+-.++.+
T Consensus 18 ~~~v~~~L~~~~Vlt~~~~e~I~~~~--tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~ 73 (84)
T cd08326 18 PKYLWDHLLSRGVFTPDMIEEIQAAG--SRRDQARQLLIDLETRGKQAFPAFLSALRE 73 (84)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44567778888999999999988753 456778888888888888888888888853
No 65
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=23.98 E-value=1.3e+02 Score=23.25 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=34.1
Q ss_pred HHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhh
Q 032249 25 SEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSI 89 (144)
Q Consensus 25 ~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~l 89 (144)
++.+.-|..+.++.||+.-..-+...++++ +.++... +..||-.+.-+.|-|--.-...
T Consensus 42 ~eA~~~L~~LvDeSDPD~d~~~i~H~lQTA----EaiR~d~--~~~dW~~LtGLiHDLGKvl~~~ 100 (253)
T PF05153_consen 42 WEALELLNTLVDESDPDTDLPQIQHALQTA----EAIRRDH--PDPDWMQLTGLIHDLGKVLALF 100 (253)
T ss_dssp HHHHHHGGG---TT-TT--S-HHHHHHHHH----HHHHHHS--TT-HHHHHHHHHTTGGGHHHHC
T ss_pred HHHHHHHHHhccCccCCCchhHHHHHHHHH----HHHHHhC--CCcchhhheehhccchhhhhhh
Confidence 456777888888888887554455555554 5666664 3468999999999875444443
No 66
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.76 E-value=7.2e+02 Score=24.26 Aligned_cols=52 Identities=12% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH
Q 032249 54 SARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC 105 (144)
Q Consensus 54 ~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~ 105 (144)
....+.+++..+.++..|.+.++.+|-..-+..--+-...+..+..+|....
T Consensus 1473 l~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v 1524 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERV 1524 (1758)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3334444444444444466666666666665555555666666666555433
No 67
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=21.68 E-value=3.1e+02 Score=19.63 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHH
Q 032249 96 DACSQFREYCNAGNAEGCSRSFQL 119 (144)
Q Consensus 96 ~~~~~lE~~~~~~~~~~~~~~~~~ 119 (144)
.+...|+.+...++++.+...+..
T Consensus 128 ~~~~~l~~~~~~~d~~~A~~~~~~ 151 (171)
T PRK05014 128 TRLQQMVEQLDNEAWDAAADTVRK 151 (171)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHH
Confidence 334444444444555544443333
No 68
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=21.27 E-value=1.5e+02 Score=15.84 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032249 75 LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQ 136 (144)
Q Consensus 75 l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~ 136 (144)
+..++|.+|..-+.+. ..+..+.. ....+.....+..+.....++..-+...+.
T Consensus 6 ~~~i~Hel~~pl~~i~-----~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 59 (66)
T smart00388 6 LANLSHELRTPLTAIR-----GYLELLED---TELSEEQREYLETILRSAERLLRLINDLLD 59 (66)
T ss_pred HHHHHHhccCcHHHHH-----HHHHHHHh---CCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888885544332 12222222 111222245566666666665555555443
No 69
>PLN02956 PSII-Q subunit
Probab=20.82 E-value=3.6e+02 Score=19.95 Aligned_cols=76 Identities=7% Similarity=0.097 Sum_probs=44.2
Q ss_pred HHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcH---------------------HHHHHHHHHHHHHH
Q 032249 47 VSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGA---------------------KKVKDACSQFREYC 105 (144)
Q Consensus 47 l~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa---------------------~~L~~~~~~lE~~~ 105 (144)
...=+.+..+.|-.|+..++ .++|..++...| |.++.++- ..|.+-...|..++
T Consensus 85 A~ar~k~~A~~l~~LK~LI~--k~~W~yvrn~LR---gp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~~LD~AA 159 (185)
T PLN02956 85 AESGVRGHAENLLRVKALIE--SESWKEAQKALR---RSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVTKLDYAA 159 (185)
T ss_pred HHHHHHHHHHHHHHHHHHhh--hccHHHHHHHHH---ccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888999886 479988888766 44555542 23344444455555
Q ss_pred HcCChhhHHHHHHHHHHHHHHH
Q 032249 106 NAGNAEGCSRSFQLIKQEYETL 127 (144)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~ 127 (144)
+.++.......+......+..+
T Consensus 160 R~kd~~~a~k~Y~~tva~lD~V 181 (185)
T PLN02956 160 RDKDETRVWEYYENIVASLDDI 181 (185)
T ss_pred hcCCHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444444433
No 70
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.77 E-value=1.5e+02 Score=15.70 Aligned_cols=25 Identities=20% Similarity=0.330 Sum_probs=13.2
Q ss_pred HHHHHHHccccCCChHHHHHHHHHH
Q 032249 26 EQLIQLEDLQDDANPNFVEEVVSLF 50 (144)
Q Consensus 26 ~~l~~L~~l~~~~~~~~~~~ll~~F 50 (144)
..+..|.++.+.-++..++..+...
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHc
Confidence 4556666666555555544444433
No 71
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=20.73 E-value=51 Score=17.17 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=8.4
Q ss_pred HHHHHHHccccCCChHH
Q 032249 26 EQLIQLEDLQDDANPNF 42 (144)
Q Consensus 26 ~~l~~L~~l~~~~~~~~ 42 (144)
+.|+++..+...+-.+|
T Consensus 7 ~lLDeId~vLe~NAe~F 23 (33)
T TIGR03687 7 DLLDEIDGVLESNAEEF 23 (33)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 44555555554443444
No 72
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.15 E-value=5.8e+02 Score=22.15 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=40.7
Q ss_pred CHHHHHHHHHhhhhhhhhhcHHHHHH-HHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 032249 71 DFSRLDDILHQFKGSCSSIGAKKVKD-ACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQA 141 (144)
Q Consensus 71 D~~~l~~~aH~LKGss~~lGa~~L~~-~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~ 141 (144)
.+.-|.+.+|++-..|-++||.+=-. +.+.+| -....++-|+..|..-..+|..+-+...|+
T Consensus 263 ~l~~l~~~~~rvss~AE~lGAv~QE~R~SkAve---------vM~qhvenLkr~~~kehaeL~E~k~~l~qn 325 (538)
T PF05781_consen 263 SLDVLHQCATRVSSRAEMLGAVHQESRVSKAVE---------VMIQHVENLKRMYEKEHAELEELKKLLLQN 325 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45668899999999999999865322 222222 233456777777777777777666654444
Done!