Query 032249
Match_columns 144
No_of_seqs 154 out of 1014
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 18:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 4.2E-32 1.4E-36 192.7 17.1 143 1-144 1-143 (153)
2 1yvi_A Histidine-containing ph 100.0 3.2E-30 1.1E-34 182.2 16.4 141 3-144 3-144 (149)
3 2r25_A Phosphorelay intermedia 99.9 2.3E-24 7.8E-29 153.7 14.7 120 16-137 2-165 (167)
4 2a0b_A HPT domain; sensory tra 99.9 3.2E-22 1.1E-26 137.0 9.5 118 16-138 5-122 (125)
5 3myf_A Sensor protein; HPT, hi 99.9 1.4E-20 4.8E-25 128.1 14.3 114 18-137 1-115 (119)
6 3iqt_A Signal transduction his 99.8 5.7E-20 2E-24 125.8 12.3 111 19-135 11-122 (123)
7 1y6d_A Phosphorelay protein LU 99.7 3.6E-19 1.2E-23 121.3 1.0 111 19-134 8-118 (120)
8 2ooc_A Histidine phosphotransf 99.7 3.7E-17 1.3E-21 110.2 8.8 102 19-136 7-108 (113)
9 1sr2_A Putative sensor-like hi 99.7 1.6E-16 5.6E-21 107.5 8.0 88 38-127 28-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.5 6.2E-14 2.1E-18 92.8 9.8 91 43-133 3-102 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 5.6E-13 1.9E-17 92.6 7.2 91 44-134 3-102 (139)
12 1i5n_A Chemotaxis protein CHEA 99.4 3E-12 1E-16 89.6 8.5 91 44-134 6-105 (146)
13 2lch_A Protein OR38; structura 99.4 3.2E-12 1.1E-16 85.7 8.2 91 44-134 5-104 (113)
14 3kyj_A CHEA3, putative histidi 99.1 5.2E-10 1.8E-14 78.0 9.3 92 43-134 9-109 (144)
15 2lp4_A Chemotaxis protein CHEA 98.8 1.8E-08 6.2E-13 74.9 9.4 91 44-134 6-105 (225)
16 3zsu_A TLL2057 protein, cyanoq 78.7 12 0.00042 25.0 9.6 53 20-87 12-64 (130)
17 3ls0_A SLL1638 protein, PSBQ; 70.6 21 0.00072 23.9 10.6 34 52-87 33-67 (133)
18 1vyk_A Oxygen-evolving enhance 55.5 46 0.0016 22.6 10.5 74 51-126 52-143 (149)
19 1fpo_A HSC20, chaperone protei 54.7 49 0.0017 22.7 8.0 37 44-82 115-151 (171)
20 1wjt_A Transcription elongatio 54.0 16 0.00054 23.3 3.7 37 84-120 4-40 (103)
21 3hho_A CO-chaperone protein HS 51.4 56 0.0019 22.4 7.3 21 96-116 131-151 (174)
22 2f4m_B UV excision repair prot 51.0 20 0.00068 20.6 3.5 38 25-63 10-47 (61)
23 3zbh_A ESXA; unknown function, 48.6 41 0.0014 20.0 7.8 19 71-89 10-28 (99)
24 3gwk_C SAG1039, putative uncha 48.3 42 0.0015 20.1 9.0 70 70-140 8-80 (98)
25 3uo3_A J-type CO-chaperone JAC 46.8 70 0.0024 22.2 7.5 42 92-134 132-173 (181)
26 4ioe_A Secreted protein ESXB; 43.1 50 0.0017 19.5 5.3 19 71-89 10-28 (93)
27 3bvo_A CO-chaperone protein HS 42.7 88 0.003 22.2 7.4 39 43-83 153-191 (207)
28 2vs0_A Virulence factor ESXA; 42.6 52 0.0018 19.5 9.2 70 70-140 6-78 (97)
29 2qsf_X RAD23, UV excision repa 38.3 31 0.0011 24.1 3.5 42 21-63 27-69 (171)
30 1pve_A HHR23B, UV excision rep 34.8 15 0.0005 22.0 1.1 35 27-62 14-48 (72)
31 2di0_A Activating signal coint 32.7 53 0.0018 19.4 3.4 37 26-62 15-51 (71)
32 3p9y_A CG14216, LD40846P; phos 30.2 61 0.0021 23.1 3.9 33 87-125 152-184 (198)
33 3hc1_A Uncharacterized HDOD do 29.5 89 0.0031 23.1 5.1 94 1-100 7-100 (305)
34 1gp8_A Protein (scaffolding pr 29.1 66 0.0023 16.7 4.5 23 60-84 16-38 (40)
35 1wgl_A TOLL-interacting protei 28.2 62 0.0021 18.2 3.1 43 20-62 5-47 (59)
36 2kjg_A Archaeal protein SSO690 27.6 1E+02 0.0034 19.1 4.1 30 21-50 2-31 (99)
37 2jtt_C Calcyclin-binding prote 25.5 27 0.00091 17.8 1.0 26 28-53 9-34 (35)
38 4h3k_B RNA polymerase II subun 24.6 92 0.0031 22.5 4.0 18 86-103 167-184 (214)
39 3k1h_A HP1076, putative unchar 23.3 50 0.0017 22.7 2.3 35 73-107 15-50 (158)
40 3nmd_A CGMP dependent protein 22.5 1.3E+02 0.0044 17.8 4.2 55 80-134 7-66 (72)
41 3fav_B ESAT-6, 6 kDa early sec 22.4 1.3E+02 0.0043 17.7 6.5 68 71-139 6-76 (94)
42 3m50_P N.plumbaginifolia H+-tr 22.0 19 0.00065 17.8 0.0 9 77-85 2-10 (31)
43 1h2v_C 80 kDa nuclear CAP bind 21.7 3.8E+02 0.013 23.0 12.5 104 25-137 64-186 (771)
44 1txp_A HnRNP C, heterogeneous 20.4 86 0.0029 15.0 3.0 23 118-140 2-24 (28)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=4.2e-32 Score=192.66 Aligned_cols=143 Identities=41% Similarity=0.786 Sum_probs=135.0
Q ss_pred CChhHHHHHHHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 032249 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH 80 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH 80 (144)
|...+|+.++.+|+++++++++|| ++|++|+++.++++|+|+.+++..|++++++.+..|..+++.+..|+..+...+|
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~g~LD-~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH 79 (153)
T 3us6_A 1 MEVGQMRRQWVDYIKSMFMEGFLD-GQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVH 79 (153)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCC-HHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccccchH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 667899999999999999999999 8899999999889999999999999999999999999999642229999999999
Q ss_pred hhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhC
Q 032249 81 QFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAKAA 144 (144)
Q Consensus 81 ~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~~~~ 144 (144)
+|||||+++|+.+|+.+|..||.+++.++.+.+...+..|+.+|.+++.+|++|++.++|..++
T Consensus 80 ~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~ 143 (153)
T 3us6_A 80 QFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAA 143 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999998764
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=99.97 E-value=3.2e-30 Score=182.24 Aligned_cols=141 Identities=36% Similarity=0.698 Sum_probs=130.1
Q ss_pred hhHHHHHHHHhHhccCCCCCCCHHHHHHHHccccCCC-hHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 032249 3 SNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDAN-PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ 81 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~-~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 81 (144)
..+|++++..|.++++++++||+. |++|+++.++++ ++|+.+++..|+++.+..+..|..+++.++.|+..+...+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~-~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~ 81 (149)
T 1yvi_A 3 AAALRDQLTALLSSMFSQGLVDEQ-FQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHH-HHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccHH-HHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 368999999999999999999998 999999977677 999999999999999999999999997422389999999999
Q ss_pred hhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhC
Q 032249 82 FKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAKAA 144 (144)
Q Consensus 82 LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~~~~ 144 (144)
|||||++||+.+|+.+|..||..++.++.+.+...+..++.+|.+++.+|+.|++.++|.+++
T Consensus 82 LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~ 144 (149)
T 1yvi_A 82 LKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAY 144 (149)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999998763
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.92 E-value=2.3e-24 Score=153.67 Aligned_cols=120 Identities=16% Similarity=0.349 Sum_probs=110.4
Q ss_pred ccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHH
Q 032249 16 SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVK 95 (144)
Q Consensus 16 ~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~ 95 (144)
++.++++||+.+|++|+++.+++ |+|+.++|..|++++++.+..|+.+++ +.+|+..+...+|+|||||++|||.++.
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~ 79 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIA 79 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 46788999999999999998865 999999999999999999999999997 3589999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC------------hh--------------------------------hHHHHHHHHHHHHHHHHHHH
Q 032249 96 DACSQFREYCNAGN------------AE--------------------------------GCSRSFQLIKQEYETLRRRL 131 (144)
Q Consensus 96 ~~~~~lE~~~~~~~------------~~--------------------------------~~~~~~~~l~~~~~~~~~~L 131 (144)
.+|.+||..++.++ .. .+...+.+++.+|..++.+|
T Consensus 80 ~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~L 159 (167)
T 2r25_A 80 WVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIEL 159 (167)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 32 56788999999999999999
Q ss_pred HHHHHh
Q 032249 132 ESYFQM 137 (144)
Q Consensus 132 ~~~l~~ 137 (144)
+.|++.
T Consensus 160 ~~~~~~ 165 (167)
T 2r25_A 160 SKYYNT 165 (167)
T ss_dssp HHHTTS
T ss_pred HHHHcc
Confidence 999753
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.87 E-value=3.2e-22 Score=137.03 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=107.5
Q ss_pred ccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHH
Q 032249 16 SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVK 95 (144)
Q Consensus 16 ~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~ 95 (144)
++.+.++||+.+|.+|.+. .+++++.+++..|+++.+..+..|..++. .+|+..+.+.+|+|||+|+++|+.+|+
T Consensus 5 ~~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~--~~d~~~~~~~aH~LKGsa~~lG~~~l~ 79 (125)
T 2a0b_A 5 NSKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLT--AQDKKGIVEEGHKIKGAAGSVGLRHLQ 79 (125)
T ss_dssp -CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4455689999999999987 46889999999999999999999999997 379999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032249 96 DACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMV 138 (144)
Q Consensus 96 ~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~ 138 (144)
.+|..+|..++.++...+...+..|...|.++...|+.|+...
T Consensus 80 ~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~ 122 (125)
T 2a0b_A 80 QLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKA 122 (125)
T ss_dssp HHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988888888899999999999999999998753
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.86 E-value=1.4e-20 Score=128.12 Aligned_cols=114 Identities=12% Similarity=0.251 Sum_probs=102.0
Q ss_pred CCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHH
Q 032249 18 FDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDA 97 (144)
Q Consensus 18 ~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~ 97 (144)
+|.+++||+..-. .. +|+++++.+|+..|+++.+.++..|+.++. .+||..+.+.+|+|||+|+++|+.+|..+
T Consensus 1 ~~~~~~D~~~~l~---~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~--~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~ 74 (119)
T 3myf_A 1 FDLHTLNWDLCLT---QA-NHKSNLALEMLKMLLDSLPETVEKIQTALG--QNDQATMLSTIHKLHGASCYCGVPTTQRL 74 (119)
T ss_dssp -CTTTCCHHHHHH---HT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred CCccccCHHHHHH---Hh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4678999875443 33 389999999999999999999999999997 37999999999999999999999999999
Q ss_pred HHHHHHHHHcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032249 98 CSQFREYCNAGNA-EGCSRSFQLIKQEYETLRRRLESYFQM 137 (144)
Q Consensus 98 ~~~lE~~~~~~~~-~~~~~~~~~l~~~~~~~~~~L~~~l~~ 137 (144)
|..||..++.+.. +.+...+..+..++..+..+++.|+..
T Consensus 75 ~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 75 CQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999874 678888999999999999999999874
No 6
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.83 E-value=5.7e-20 Score=125.76 Aligned_cols=111 Identities=15% Similarity=0.328 Sum_probs=99.4
Q ss_pred CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 032249 19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC 98 (144)
Q Consensus 19 ~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~ 98 (144)
..|++||+..-.+ . +|+++++.+|+..|+++.+.++..|+.++. .+||..+.+.+|+|||+|+++|+.+|..+|
T Consensus 11 ~~~~~D~~~~l~~---a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~--~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~c 84 (123)
T 3iqt_A 11 PNATLDWQLALRQ---A-AGKTDLARDMLQMLLDFLPEVRNKVEEQLV--GENPEGLVDLIHKLHGSCGYSGVPRMKNLC 84 (123)
T ss_dssp GGGTCCHHHHHHH---T-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCTTHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred CCCccCHHHHHHH---h-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3589998865443 3 389999999999999999999999999996 479999999999999999999999999999
Q ss_pred HHHHHHHHcCChh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 032249 99 SQFREYCNAGNAE-GCSRSFQLIKQEYETLRRRLESYF 135 (144)
Q Consensus 99 ~~lE~~~~~~~~~-~~~~~~~~l~~~~~~~~~~L~~~l 135 (144)
..||+.++.++.. .+...+..+..++..+..+.+.|+
T Consensus 85 ~~LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 85 QLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998754 778889999999999999998875
No 7
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.73 E-value=3.6e-19 Score=121.31 Aligned_cols=111 Identities=14% Similarity=0.223 Sum_probs=88.3
Q ss_pred CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 032249 19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC 98 (144)
Q Consensus 19 ~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~ 98 (144)
+.|.+|+.++.+|+.. .+++++.+++..|+++.++.+..|+.+.+ ..|+..+.+.+|+|||||+++|+.+|+.+|
T Consensus 8 ~~~~~d~~~l~~L~~~---~g~~~~~e~~~~F~~e~~e~l~~L~~a~~--~~~~~~i~r~aH~LKGsAa~~Ga~~l~~~~ 82 (120)
T 1y6d_A 8 NTDVLNQQKIEELSAE---IGSDNVPVLLDIFLGEMDSYIGTLTELQG--SEQLLYLKEISHALKSSAASFGADRLCERA 82 (120)
T ss_dssp CCTTTTTTHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTTTSS--HHHHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred CCccccHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHhhhHHHhCHHHHHHHH
Confidence 4688999988888765 46889999999999999999999998764 357888999999999999999999999999
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 032249 99 SQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESY 134 (144)
Q Consensus 99 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~ 134 (144)
..+|..+|.|+...+......+...+.+....++.|
T Consensus 83 ~~lE~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 83 IAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp HHHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 999999998766533333344444444444444443
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.71 E-value=3.7e-17 Score=110.19 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=86.4
Q ss_pred CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 032249 19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC 98 (144)
Q Consensus 19 ~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~ 98 (144)
+.++||.+.+..+ . +|+++++.+++..|+++++.++..|..+. .|| ++.+|+|||+|++||+.+|..+|
T Consensus 7 ~~~~iD~~~L~~~---~-~gd~~~~~elL~~F~~~~~~~l~~L~~a~----~~~---~~~aH~LKGsA~~iGA~~l~~~c 75 (113)
T 2ooc_A 7 ISGAVDFAYLEGF---A-AGDFAVVDEVLALFREQAALWAPMLDPTH----PGW---KDAVHTVKGAARGVGAFNLGEVC 75 (113)
T ss_dssp --CCSCHHHHHHH---T-TTCHHHHHHHHHHHHHHHHHHGGGCSTTS----TTH---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCcCHHHHHhH---h-CCCHHHHHHHHHHHHHHhHHHHHHHHHhh----HHH---HHHHHHHHHHHHHcCHHHHHHHH
Confidence 4578998877743 3 37999999999999999999999998862 465 89999999999999999999999
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032249 99 SQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQ 136 (144)
Q Consensus 99 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~ 136 (144)
..+|..++. ....+..|...+..+..+|...++
T Consensus 76 ~~lE~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~ 108 (113)
T 2ooc_A 76 ERCEAGQES-----LEGVRTALDAALLDIAAYAHEQAL 108 (113)
T ss_dssp HHHHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998875 456688889999999888888764
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.67 E-value=1.6e-16 Score=107.47 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 032249 38 ANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSF 117 (144)
Q Consensus 38 ~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~ 117 (144)
+.+..-.+++..|+++.+.++..|..++. .+||..+++.+|+|||+++++|+..|+.+|.++|..++.++...+...+
T Consensus 28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~--~~D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i 105 (116)
T 1sr2_A 28 NAQLHASGYYALFVDTVPDDVKRLYTEAA--TSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI 105 (116)
T ss_dssp HHHHHHHTTHHHHTTTHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchhchHHHHHHHHHHhHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34556677899999999999999999997 4799999999999999999999999999999999999999888777777
Q ss_pred HHHHHHHHHH
Q 032249 118 QLIKQEYETL 127 (144)
Q Consensus 118 ~~l~~~~~~~ 127 (144)
..|...+.++
T Consensus 106 ~~L~~~l~~L 115 (116)
T 1sr2_A 106 SDIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777666553
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.53 E-value=6.2e-14 Score=92.81 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhC------CCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HcCChhhH
Q 032249 43 VEEVVSLFYSDSARLIQNIEQTLSN------RPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNAEGC 113 (144)
Q Consensus 43 ~~~ll~~Fl~~~~~~l~~L~~a~~~------~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~~~ 113 (144)
+.+++..|+++.++.+..|+.++.. ...++..+.+.+|+|||+|+++|+..+..+|..+|... +.+.....
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~ 82 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKIT 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4678999999999999999998831 02367899999999999999999999999999999976 66776666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032249 114 SRSFQLIKQEYETLRRRLES 133 (144)
Q Consensus 114 ~~~~~~l~~~~~~~~~~L~~ 133 (144)
...+..+...+..+...+..
T Consensus 83 ~~~~~~l~~~~d~l~~~l~~ 102 (105)
T 1tqg_A 83 SDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888777764
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.40 E-value=5.6e-13 Score=92.63 Aligned_cols=91 Identities=18% Similarity=0.284 Sum_probs=72.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhC------CCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HcCChhhHH
Q 032249 44 EEVVSLFYSDSARLIQNIEQTLSN------RPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNAEGCS 114 (144)
Q Consensus 44 ~~ll~~Fl~~~~~~l~~L~~a~~~------~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~~~~ 114 (144)
.+++..|++++++.+..|+.++.. ...++..+.+.+|+|||+|+++|+..+..+|..+|... +.+......
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~ 82 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS 82 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 467999999999999999998831 13578999999999999999999999999999999866 566544444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032249 115 RSFQLIKQEYETLRRRLESY 134 (144)
Q Consensus 115 ~~~~~l~~~~~~~~~~L~~~ 134 (144)
..+..+...+..+...+...
T Consensus 83 ~l~~~l~~~~D~l~~~l~~~ 102 (139)
T 2ld6_A 83 DLLDKIFAGVDMITRMVDKI 102 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666554
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.35 E-value=3e-12 Score=89.65 Aligned_cols=91 Identities=14% Similarity=0.347 Sum_probs=70.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHH---HHcCChhhHH
Q 032249 44 EEVVSLFYSDSARLIQNIEQTLSNR------PVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREY---CNAGNAEGCS 114 (144)
Q Consensus 44 ~~ll~~Fl~~~~~~l~~L~~a~~~~------~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~---~~~~~~~~~~ 114 (144)
.+++..|+++.++.+..|+..+..- ..++..+.+.+|+|||+|+++|+..+..+|..+|.. .+.+......
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~ 85 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 3569999999999999999988221 124589999999999999999999999999999987 5666654444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032249 115 RSFQLIKQEYETLRRRLESY 134 (144)
Q Consensus 115 ~~~~~l~~~~~~~~~~L~~~ 134 (144)
..+..+...+..+...+..+
T Consensus 86 ~l~~~l~~~~D~l~~~l~~~ 105 (146)
T 1i5n_A 86 DIINLFLETKDIMQEQLDAY 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665555544
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.35 E-value=3.2e-12 Score=85.66 Aligned_cols=91 Identities=15% Similarity=0.279 Sum_probs=71.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhC---CCC---CHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHH---HHcCChhhHH
Q 032249 44 EEVVSLFYSDSARLIQNIEQTLSN---RPV---DFSRLDDILHQFKGSCSSIGAKKVKDACSQFREY---CNAGNAEGCS 114 (144)
Q Consensus 44 ~~ll~~Fl~~~~~~l~~L~~a~~~---~~~---D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~---~~~~~~~~~~ 114 (144)
.+++..|++++++.+..|+..+.. ... ++..+.+.+|+|||+|+++|+..+..+|..+|.. .+.+......
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~ 84 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 467999999999999999998731 112 3567999999999999999999999999999974 4566655555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032249 115 RSFQLIKQEYETLRRRLESY 134 (144)
Q Consensus 115 ~~~~~l~~~~~~~~~~L~~~ 134 (144)
..+..+...+..+...+..+
T Consensus 85 ~l~~~l~~~~d~l~~~l~~~ 104 (113)
T 2lch_A 85 DLIDKVKKKLDMVTRELDKK 104 (113)
T ss_dssp HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777766543
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.10 E-value=5.2e-10 Score=78.05 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhh---CCCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HcCChhhH
Q 032249 43 VEEVVSLFYSDSARLIQNIEQTLS---NRPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNAEGC 113 (144)
Q Consensus 43 ~~~ll~~Fl~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~~~ 113 (144)
..+++..|++++.+.++.|+..+. ....| +..+.+.+|+|||+|+++|+..+..+|..+|... +.+...--
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 467799999999999999998763 11123 4679999999999999999999999999999865 44544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032249 114 SRSFQLIKQEYETLRRRLESY 134 (144)
Q Consensus 114 ~~~~~~l~~~~~~~~~~L~~~ 134 (144)
...+..+...+..+...+...
T Consensus 89 ~~l~dlll~~~D~l~~lv~~~ 109 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLEET 109 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555544
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.84 E-value=1.8e-08 Score=74.91 Aligned_cols=91 Identities=15% Similarity=0.371 Sum_probs=67.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhC---CCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH---cCChhhHH
Q 032249 44 EEVVSLFYSDSARLIQNIEQTLSN---RPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN---AGNAEGCS 114 (144)
Q Consensus 44 ~~ll~~Fl~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~---~~~~~~~~ 114 (144)
.+++..|++++.+.+..|+..+.. ...| ...+.+.+|+|||+|+++|+..+..+|..+|.... .+...--.
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~ 85 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 356999999999999999997732 1123 46889999999999999999999999999998664 45543334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032249 115 RSFQLIKQEYETLRRRLESY 134 (144)
Q Consensus 115 ~~~~~l~~~~~~~~~~L~~~ 134 (144)
..+..+...+..+...+..+
T Consensus 86 ~~~~ll~~~~D~l~~~l~~~ 105 (225)
T 2lp4_A 86 DIINLFLETKDIMQEQLDAY 105 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 16
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=78.72 E-value=12 Score=24.98 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhh
Q 032249 20 QGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCS 87 (144)
Q Consensus 20 ~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~ 87 (144)
+|..-+..+.+|+.. +.. +.+..+++.+|...+++ +||..++...|.--|..+
T Consensus 12 pptysp~~i~~iq~y------------~~~-i~~~r~Rl~eL~~lI~~--~~W~~~Rn~IhGPlg~lr 64 (130)
T 3zsu_A 12 PPTYSELQITRIQDY------------LRD-IEKNAERFADLEVSVAK--GDWQEARNIMRGPLGEML 64 (130)
T ss_dssp CCCCCHHHHHHHHHH------------HHH-HHHHHTTHHHHHHHHHT--TCHHHHHHHHHTHHHHHH
T ss_pred CCCcCHHHHHHHHHH------------HHH-HHHHHHHHHHHHHHHhh--cchHHHHHHHhchHHHHH
Confidence 455555655555443 112 34456778899999974 799999999998666543
No 17
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=70.64 E-value=21 Score=23.91 Aligned_cols=34 Identities=6% Similarity=0.161 Sum_probs=26.6
Q ss_pred HhHHHHHHH-HHHHhhCCCCCHHHHHHHHHhhhhhhh
Q 032249 52 SDSARLIQN-IEQTLSNRPVDFSRLDDILHQFKGSCS 87 (144)
Q Consensus 52 ~~~~~~l~~-L~~a~~~~~~D~~~l~~~aH~LKGss~ 87 (144)
.+..+++.+ |...+++ +||..++...|.--|..+
T Consensus 33 ~~ar~Rl~e~L~~lI~~--~~W~~~Rn~IhGPlg~lr 67 (133)
T 3ls0_A 33 AVARDGMEKRLQGLIAD--QNWVDTQTYIHGPLGQLR 67 (133)
T ss_dssp HHHHHHHHHTHHHHHHT--TCHHHHHHHHHTTTTTHH
T ss_pred HHHHHHhHHHHHHHhhh--cchHHHHHHHhchHHHHH
Confidence 445667788 9999974 799999999998766543
No 18
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=55.55 E-value=46 Score=22.63 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=42.6
Q ss_pred HHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhh--------hhhhc----------HHHHHHHHHHHHHHHHcCChhh
Q 032249 51 YSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGS--------CSSIG----------AKKVKDACSQFREYCNAGNAEG 112 (144)
Q Consensus 51 l~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGs--------s~~lG----------a~~L~~~~~~lE~~~~~~~~~~ 112 (144)
+.++...|..++..+++ .+|..++...|.=-|- ..++. +..|..-...|..+++..+...
T Consensus 52 Ik~~a~~i~~vk~lI~k--~~W~~vrn~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~ 129 (149)
T 1vyk_A 52 AKVSASEILNVKQFIDR--KAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTE 129 (149)
T ss_dssp HHHHHHHHHTTHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhhh--ccHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44566666778888874 7999999988853332 11111 1345555555666666666655
Q ss_pred HHHHHHHHHHHHHH
Q 032249 113 CSRSFQLIKQEYET 126 (144)
Q Consensus 113 ~~~~~~~l~~~~~~ 126 (144)
+...+......+..
T Consensus 130 a~~~Y~~t~~~ld~ 143 (149)
T 1vyk_A 130 AEKYYGQTVSNINE 143 (149)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 54444444333333
No 19
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=54.67 E-value=49 Score=22.71 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 032249 44 EEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQF 82 (144)
Q Consensus 44 ~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L 82 (144)
..+....-......+..|..++. .+||...+..+.+|
T Consensus 115 ~~l~~~~~~~~~~~~~~l~~~~~--~~~~~~A~~~~~kl 151 (171)
T 1fpo_A 115 ESFIKRVKKMFDTRHQLMVEQLD--NETWDAAADTCRKL 151 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hCcHHHHHHHHHHH
Confidence 33333333333334444445554 23555555554443
No 20
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=53.96 E-value=16 Score=23.29 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=22.6
Q ss_pred hhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 032249 84 GSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120 (144)
Q Consensus 84 Gss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l 120 (144)
|++++-....+..++..|+.+....+.+.+-+++..|
T Consensus 4 ~~~~M~~e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L 40 (103)
T 1wjt_A 4 GSSGMGLEEELLRIAKKLEKMVSRKKTEGALDLLKKL 40 (103)
T ss_dssp SCCSSCSHHHHHHHHHHHHHHHHTTCCSSHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444667777778888766655555555555555
No 21
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=51.40 E-value=56 Score=22.44 Aligned_cols=21 Identities=5% Similarity=-0.054 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHcCChhhHHHH
Q 032249 96 DACSQFREYCNAGNAEGCSRS 116 (144)
Q Consensus 96 ~~~~~lE~~~~~~~~~~~~~~ 116 (144)
.+...|+.+...+++......
T Consensus 131 ~~~~~l~~~~~~~d~~~A~~~ 151 (174)
T 3hho_A 131 HYLAQLQGQLAQSEWLAAADQ 151 (174)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHH
Confidence 334444444444444444333
No 22
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=51.03 E-value=20 Score=20.63 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=31.2
Q ss_pred HHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHH
Q 032249 25 SEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQ 63 (144)
Q Consensus 25 ~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~ 63 (144)
...|..++++.. .+|+++..++...-.+.+..+..|.+
T Consensus 10 ~Pqf~~lR~~vq-~NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 10 QPQFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp CHHHHHHHHHHH-HCGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred ChHHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 358889999887 68999999999888888887776654
No 23
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=48.59 E-value=41 Score=20.04 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=8.4
Q ss_pred CHHHHHHHHHhhhhhhhhh
Q 032249 71 DFSRLDDILHQFKGSCSSI 89 (144)
Q Consensus 71 D~~~l~~~aH~LKGss~~l 89 (144)
|++.+...+-.+...+..|
T Consensus 10 ~~~~l~~~A~~~~~~~~~i 28 (99)
T 3zbh_A 10 TPEELRGVARQYNVESSNV 28 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 24
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=48.32 E-value=42 Score=20.13 Aligned_cols=70 Identities=9% Similarity=0.111 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHc--CC-hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032249 70 VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNA--GN-AEGCSRSFQLIKQEYETLRRRLESYFQMVKQ 140 (144)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~ 140 (144)
.+++.+...+-.++..+..+-- .+..+...+...... |. ...+...+......+.++...|..+-...++
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTE-VLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776666532 233344444433221 22 3456666666666666666666665544443
No 25
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=46.77 E-value=70 Score=22.19 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 032249 92 KKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESY 134 (144)
Q Consensus 92 ~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~ 134 (144)
.++..+...|+.+...++++.+...+..++= |.++...++.|
T Consensus 132 ~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y-~~kl~~~ik~w 173 (181)
T 3uo3_A 132 ERIQDIEAQLGQCYNDKDYAAAVKLTVELKY-WYNLAKAFKDW 173 (181)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 3455556666666666666666555555533 45555555443
No 26
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=43.09 E-value=50 Score=19.48 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=10.2
Q ss_pred CHHHHHHHHHhhhhhhhhh
Q 032249 71 DFSRLDDILHQFKGSCSSI 89 (144)
Q Consensus 71 D~~~l~~~aH~LKGss~~l 89 (144)
|++.++..+-.+++.+..+
T Consensus 10 ~~e~l~~~A~~~~~~~~~i 28 (93)
T 4ioe_A 10 TPEELERIAGNFKNAAGEA 28 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444
No 27
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=42.68 E-value=88 Score=22.17 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhh
Q 032249 43 VEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFK 83 (144)
Q Consensus 43 ~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (144)
+..+...+-......+..|..++. .+||..+...+.+||
T Consensus 153 l~~l~~~~~~~~~~~~~~l~~~~~--~~d~~~A~~~v~kL~ 191 (207)
T 3bvo_A 153 MKEIESIVKAKQKEFTDNVSSAFE--QDDFEEAKEILTKMR 191 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 344444444444444555666665 256766666666654
No 28
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=42.58 E-value=52 Score=19.47 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH--cCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032249 70 VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN--AGN-AEGCSRSFQLIKQEYETLRRRLESYFQMVKQ 140 (144)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~--~~~-~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~ 140 (144)
.|++.+...+-.+++.++.+-. .+..+...+..... .|. ...+...+.+....+..+...|..+-...++
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~-~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQ-ILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777788777777776642 23333333333222 132 3456666677777777777776666554443
No 29
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=38.27 E-value=31 Score=24.06 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=32.6
Q ss_pred CCC-CHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHH
Q 032249 21 GYL-DSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQ 63 (144)
Q Consensus 21 ~~l-D~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~ 63 (144)
.+. +..+|.+++++.- .+|+++..|+...-.+.|..++.|.+
T Consensus 27 ~L~~~~Pqf~qlRq~vq-qNPqlL~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 27 SIGLTVEDLLSLRQVVS-GNPEALAPLLENISARYPQLREHIMA 69 (171)
T ss_dssp -CCCCHHHHHHHHHHHH-TCGGGHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH-HCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 344 7889999999987 79999998888777777777666543
No 30
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=34.78 E-value=15 Score=22.00 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=27.7
Q ss_pred HHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHH
Q 032249 27 QLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIE 62 (144)
Q Consensus 27 ~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~ 62 (144)
+|..|+++.. .+|+++..++...-.+.+..+..|.
T Consensus 14 qf~qlR~~vq-qNP~lL~~lLqqL~~~NPqL~q~I~ 48 (72)
T 1pve_A 14 QFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQIS 48 (72)
T ss_dssp TTTTHHHHHT-TCGGGHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHH
Confidence 5668888876 6899999988888888887776654
No 31
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.72 E-value=53 Score=19.45 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=29.7
Q ss_pred HHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHH
Q 032249 26 EQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIE 62 (144)
Q Consensus 26 ~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~ 62 (144)
+.+.+++.+..+-+..|+..++..|=.+.++-+..|-
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5678888898888899999988888777777666653
No 32
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=30.19 E-value=61 Score=23.12 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=22.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 032249 87 SSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYE 125 (144)
Q Consensus 87 ~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~ 125 (144)
+.+|+..+.++|..|+. ..+ +...+..|-.+|+
T Consensus 152 A~~Ga~~ileL~~~l~~---~~d---~e~~i~~il~~fe 184 (198)
T 3p9y_A 152 ALMGAFVITDMINMMAK---STD---LDNDIDELIQEFE 184 (198)
T ss_dssp HHHHHHHHHHHHHHHHT---CSS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---chh---HHHHHHHHHHHHH
Confidence 78999999999999985 333 3344455544444
No 33
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=29.50 E-value=89 Score=23.11 Aligned_cols=94 Identities=9% Similarity=0.128 Sum_probs=48.9
Q ss_pred CChhHHHHHHHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 032249 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH 80 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH 80 (144)
|+.++..+.+........+-|.+-. ++.+|.++....+.+ +.++......| +..-.++-..++. -+-....-+.
T Consensus 7 ~~~~~~~~~~~~~l~~~~~lP~~p~-~~~~l~~~~~~~~~~-~~~la~~I~~D-p~Ls~~lLr~aNS---~~~~~~~~I~ 80 (305)
T 3hc1_A 7 RDVETRLTLAREFMSGVDELPTVPD-IVLRIAGKLNDPDVA-IDEVADLLLQD-QVLTARVVHLANS---PLYSAARPIS 80 (305)
T ss_dssp -CHHHHHHHHHHHHHTCSSCCCCCH-HHHHHHHHTTCTTCC-HHHHHHHHTTC-HHHHHHHHHHHHS---HHHHTTSCCC
T ss_pred cccchHHHHHHHHHHhhhhCCCChH-HHHHHHHHHcCCCCC-HHHHHHHHHHC-HHHHHHHHHHhcc---cccCCCCCCC
Confidence 6788888899999999988888884 455555554422322 24433333333 3333333333321 1212222334
Q ss_pred hhhhhhhhhcHHHHHHHHHH
Q 032249 81 QFKGSCSSIGAKKVKDACSQ 100 (144)
Q Consensus 81 ~LKGss~~lGa~~L~~~~~~ 100 (144)
.++-+-..+|...+..++..
T Consensus 81 si~~Av~~LG~~~l~~l~~~ 100 (305)
T 3hc1_A 81 SIRDAVIYLGLDLLREAIFT 100 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666555543
No 34
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=29.06 E-value=66 Score=16.71 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhhhh
Q 032249 60 NIEQTLSNRPVDFSRLDDILHQFKG 84 (144)
Q Consensus 60 ~L~~a~~~~~~D~~~l~~~aH~LKG 84 (144)
+|.-+.+ .+|++.++.+=|.||+
T Consensus 16 qiyvA~s--eGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 16 QMDAAAS--KGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHT--TSCHHHHHHHHHHHTT
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHh
Confidence 4455664 4899999999999987
No 35
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.19 E-value=62 Score=18.24 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHH
Q 032249 20 QGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIE 62 (144)
Q Consensus 20 ~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~ 62 (144)
.+.+..+.+..|.++...-+.+.+..++...--+.+..+..|-
T Consensus 5 ~~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL 47 (59)
T 1wgl_A 5 SSGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLL 47 (59)
T ss_dssp SSSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4556678888888888776666655555444444444444443
No 36
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=27.62 E-value=1e+02 Score=19.13 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHccccCCChHHHHHHHHHH
Q 032249 21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLF 50 (144)
Q Consensus 21 ~~lD~~~l~~L~~l~~~~~~~~~~~ll~~F 50 (144)
.++|.+-|-+|+++.+..|.+.+..+++..
T Consensus 2 SvLdqeEFveLrkfKgkvd~~~v~~IL~ei 31 (99)
T 2kjg_A 2 SILEDPEFVKLRQFKGKVNFNLVMQILDEI 31 (99)
T ss_dssp CSCSCHHHHHHHHHTCCSCHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 478889999999998777766655554433
No 37
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=25.49 E-value=27 Score=17.79 Aligned_cols=26 Identities=8% Similarity=0.259 Sum_probs=18.8
Q ss_pred HHHHHccccCCChHHHHHHHHHHHHh
Q 032249 28 LIQLEDLQDDANPNFVEEVVSLFYSD 53 (144)
Q Consensus 28 l~~L~~l~~~~~~~~~~~ll~~Fl~~ 53 (144)
.+-+++++..+|++.-+.+...|.+.
T Consensus 9 ~~~fk~iY~~gddd~kram~KS~~eS 34 (35)
T 2jtt_C 9 MNVLKKIYEDGDDDMKRTINKAWVES 34 (35)
T ss_dssp HHHHHHHHTTCCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 34556777778888888877777653
No 38
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=24.60 E-value=92 Score=22.46 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.8
Q ss_pred hhhhcHHHHHHHHHHHHH
Q 032249 86 CSSIGAKKVKDACSQFRE 103 (144)
Q Consensus 86 s~~lGa~~L~~~~~~lE~ 103 (144)
-+.+|+..+.++|..||.
T Consensus 167 eA~~Ga~~ileL~~~le~ 184 (214)
T 4h3k_B 167 EATLGAFLICELCQCIQH 184 (214)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467999999999999985
No 39
>3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori}
Probab=23.30 E-value=50 Score=22.66 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhhhhhcHHHHHH-HHHHHHHHHHc
Q 032249 73 SRLDDILHQFKGSCSSIGAKKVKD-ACSQFREYCNA 107 (144)
Q Consensus 73 ~~l~~~aH~LKGss~~lGa~~L~~-~~~~lE~~~~~ 107 (144)
..+.+-+|.+||+--.+||.++.. .|..|...++.
T Consensus 15 ~~I~kFs~~IK~ANEfIGALQvldialkKL~k~~k~ 50 (158)
T 3k1h_A 15 QQIAKFSRDMKNINESVGALQVLQIACKKLFNKSMG 50 (158)
T ss_dssp -----CEEECCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457788899999999999999888 68888887643
No 40
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.46 E-value=1.3e+02 Score=17.80 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=20.5
Q ss_pred HhhhhhhhhhcHHHHHHHHHHHHHHHH---c--CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 032249 80 HQFKGSCSSIGAKKVKDACSQFREYCN---A--GNAEGCSRSFQLIKQEYETLRRRLESY 134 (144)
Q Consensus 80 H~LKGss~~lGa~~L~~~~~~lE~~~~---~--~~~~~~~~~~~~l~~~~~~~~~~L~~~ 134 (144)
|--.|.++.-|+..+.++=..|+.... . .-.......+..-..++..++..|.+|
T Consensus 7 ~~~~~~~~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 7 HHHHGMASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666665555555444443322 1 112234444555555566666666555
No 41
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=22.37 E-value=1.3e+02 Score=17.67 Aligned_cols=68 Identities=13% Similarity=0.252 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH--cCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032249 71 DFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN--AGN-AEGCSRSFQLIKQEYETLRRRLESYFQMVK 139 (144)
Q Consensus 71 D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~--~~~-~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 139 (144)
|+..+...+-.+.+.++.|.. .|..+-..+..... .|. ...+...+.+....+..+...|..+-...+
T Consensus 6 ~~~~l~~~a~~~~~~~~~i~~-~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~ 76 (94)
T 3fav_B 6 NFAGIEAAASAIQGNVTSIHS-LLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTIS 76 (94)
T ss_dssp ---CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566555555554432 12222222222111 122 223445555555555555555555444333
No 42
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=22.01 E-value=19 Score=17.84 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=5.6
Q ss_pred HHHHhhhhh
Q 032249 77 DILHQFKGS 85 (144)
Q Consensus 77 ~~aH~LKGs 85 (144)
..+|+|||-
T Consensus 2 rElhTLkgh 10 (31)
T 3m50_P 2 RELHTLKGH 10 (31)
T ss_dssp HHHHCHHHH
T ss_pred chhhHHHHH
Confidence 356777764
No 43
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=21.74 E-value=3.8e+02 Score=22.96 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=69.8
Q ss_pred HHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhh--hcHHHHHHHHHHHH
Q 032249 25 SEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSS--IGAKKVKDACSQFR 102 (144)
Q Consensus 25 ~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~--lGa~~L~~~~~~lE 102 (144)
..++..|..+....+|++...++..++. .++.++. .+||...+..+|.|-.-... +....+..+...|=
T Consensus 64 t~vyAaLVgllN~k~pe~G~~lv~~l~~-------~f~~~l~--~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll 134 (771)
T 1h2v_C 64 LTIYTTLVGLLNARNYNFGGEFVEAMIR-------QLKESLK--ANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFV 134 (771)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHHHHHH--TTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHH-------HHHHHHH--ccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHH
Confidence 4566677777666678877776665554 5556665 37999999999999988554 88888888888777
Q ss_pred HHHHcCChhh-----------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032249 103 EYCNAGNAEG-----------------CSRSFQLIKQEYETLRRRLESYFQM 137 (144)
Q Consensus 103 ~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~L~~~l~~ 137 (144)
..+...+.+. ...+...-...+..+...++.|+..
T Consensus 135 ~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~~~~~l~~lle~~~~yl~~ 186 (771)
T 1h2v_C 135 SVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKR 186 (771)
T ss_dssp HGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 6654433222 1233344455677777777777743
No 44
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=20.38 E-value=86 Score=14.96 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 032249 118 QLIKQEYETLRRRLESYFQMVKQ 140 (144)
Q Consensus 118 ~~l~~~~~~~~~~L~~~l~~~~~ 140 (144)
+.|+.++..++..+...+....+
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666654443
Done!