BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032250
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 145 bits (367), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 76/79 (96%)
Query: 65 SSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQL 124
+S+GSRLE++VKKTV+ENPVVVYSKTWCSYSSEVK LFKRL V+PLV+ELDE+G QGPQ+
Sbjct: 1 ASFGSRLEDAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQI 60
Query: 125 QKLLERLTGQHTVPNVFIG 143
QK+LERLTGQHTVPNVFIG
Sbjct: 61 QKVLERLTGQHTVPNVFIG 79
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 61/78 (78%), Positives = 75/78 (96%)
Query: 65 SSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQL 124
+S+GSR+EES++KTV+EN VV+YSKTWCSY +EVK LFKRLGV+PLV+ELD++GPQGPQL
Sbjct: 2 ASFGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQL 61
Query: 125 QKLLERLTGQHTVPNVFI 142
QK+LERLTGQHTVPNVF+
Sbjct: 62 QKVLERLTGQHTVPNVFV 79
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT 132
+ K+ S PVVV+SKT+C Y + VK L ++G V+ELDE+ G QLQ L T
Sbjct: 11 KKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDEL-SDGSQLQSALAHWT 69
Query: 133 GQHTVPNVFIG 143
G+ TVPNVFIG
Sbjct: 70 GRGTVPNVFIG 80
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT 132
+ K+ S PVVV+SKT+C Y + VK L ++G V+ELDE+ G QLQ L T
Sbjct: 12 KKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDEL-SDGSQLQSALAHWT 70
Query: 133 GQHTVPNVFIG 143
G+ TVPNVFIG
Sbjct: 71 GRGTVPNVFIG 81
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 8/89 (8%)
Query: 61 QAMASSYGSRLEE-------SVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE 113
Q+M S+ S LE +++T+S+N VV++SKT CSY + K LF + V V+E
Sbjct: 21 QSMESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVE 80
Query: 114 LDEMGPQGPQLQKLLERLTGQHTVPNVFI 142
LD + G Q Q L ++TG+ TVP +F+
Sbjct: 81 LDLL-EYGNQFQDALYKMTGERTVPRIFV 108
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 79 VSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP 138
+ + VV++SK++C +S+ VK LF LGVE V+ELD++ G ++Q++L +T Q TVP
Sbjct: 14 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDD-GARVQEVLSEITNQKTVP 72
Query: 139 NVFIGK 144
N+F+ K
Sbjct: 73 NIFVNK 78
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134
+++T+S+N VV++SKT CSY + K LF + V V+ELD + G Q Q L ++TG+
Sbjct: 28 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLL-EYGNQFQDALYKMTGE 86
Query: 135 HTVPNVFI 142
TVP +F+
Sbjct: 87 RTVPRIFV 94
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134
+++T+S+N VV++SKT CSY + K LF + V V+ELD + G Q Q L ++TG+
Sbjct: 20 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLL-EYGNQFQDALYKMTGE 78
Query: 135 HTVPNVFI 142
TVP +F+
Sbjct: 79 RTVPRIFV 86
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 75 VKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLER 130
VK + + V V +KT+C YS + + LF+ L V + LV+ELDEM G ++Q LE
Sbjct: 13 VKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMS-NGSEIQDALEE 71
Query: 131 LTGQHTVPNVFI 142
++GQ TVPNV+I
Sbjct: 72 ISGQKTVPNVYI 83
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 75 VKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLER 130
VK + + V V +KT+C Y + + LF+ L V + LV+ELDEM G ++Q LE
Sbjct: 10 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMS-NGSEIQDALEE 68
Query: 131 LTGQHTVPNVFI 142
++GQ TVPNV+I
Sbjct: 69 ISGQKTVPNVYI 80
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 75 VKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLER 130
VK + + V V +KT+C Y + + LF+ L V + LV+ELDEM G ++Q LE
Sbjct: 30 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEM-SNGSEIQDALEE 88
Query: 131 LTGQHTVPNVFI 142
++GQ TVPNV+I
Sbjct: 89 ISGQKTVPNVYI 100
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLL 128
+ VK ++EN + V SKT+C YS + + LF++L V + LV++L++M +G +Q L
Sbjct: 8 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDM-KEGADIQAAL 66
Query: 129 ERLTGQHTVPNVFI 142
+ GQ TVPN++I
Sbjct: 67 YEINGQRTVPNIYI 80
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLL 128
+ VK ++EN + V SKT+C YS + + LF++L V + LV++L++M +G +Q L
Sbjct: 252 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDM-KEGADIQAAL 310
Query: 129 ERLTGQHTVPNVFI 142
+ GQ TVPN++I
Sbjct: 311 YEINGQRTVPNIYI 324
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLL 128
+ VK ++EN + V SKT+C Y + + LF++L V + LV++L++M +G +Q L
Sbjct: 16 KHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDM-KEGADIQAAL 74
Query: 129 ERLTGQHTVPNVFI 142
+ GQ TVPN++I
Sbjct: 75 YEINGQRTVPNIYI 88
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 45.8 bits (107), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134
++KTV V+++SKT C Y +VK + ++ IELD++ G +QK L +
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLS-NGSAIQKCLASFSKI 69
Query: 135 HTVPNVFI 142
TVP +F+
Sbjct: 70 ETVPQMFV 77
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134
++KTV V+++SKT C Y +VK + ++ IELD++ G +QK L +
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLS-NGSAIQKCLASFSKI 69
Query: 135 HTVPNVFI 142
TVP +F+
Sbjct: 70 ETVPQMFV 77
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134
++KTV V+++SKT C Y +VK + ++ IELD++ G +QK L +
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLS-NGSAIQKCLASFSKI 69
Query: 135 HTVPNVFI 142
TVP +F+
Sbjct: 70 ETVPQMFV 77
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 83 PVVVYSKTWCSYSSEVK-LLFKRLGVEP--LVIELDEMGPQGPQLQKLLERLTGQHTVPN 139
P++++SK+ CSYS K LL P +IELD+ G G +LQ+ ++ +TG+ TVPN
Sbjct: 15 PIIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHG-HGEELQEYIKLVTGRGTVPN 73
Query: 140 VFI 142
+ +
Sbjct: 74 LLV 76
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 72 EESVKKTVSENPVVVYSKTWCSYSSEV-----KLLFKRLGVEPLVIELDEMGPQGPQLQK 126
EE V++ ++ N V ++ K C + K FKR E ++++ E P+ +L+
Sbjct: 9 EEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYE--IVDIKEFKPEN-ELRD 65
Query: 127 LLERLTGQHTVPNVFIGK 144
E++TG TVP +F GK
Sbjct: 66 YFEQITGGKTVPRIFFGK 83
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGP--QGPQLQKLLE 129
+E V + VVV+ K C YS + + +L ++ ++E ++ ++Q L+
Sbjct: 2 QEFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQ 61
Query: 130 RLTGQHTVPNVFIGK 144
+LTG TVP VFIGK
Sbjct: 62 QLTGARTVPRVFIGK 76
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 72 EESVKKTVSENPVVVYSKT---WCSYSSEV--KLLFKRLGVEPLVIELDEMGPQGPQLQK 126
EE V++ ++ N V ++ K +C + ++ K FKR E ++++ E P+ +L+
Sbjct: 9 EEFVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYE--IVDIKEFKPEN-ELRD 65
Query: 127 LLERLTGQHTVPNVFIGK 144
E++TG TVP +F GK
Sbjct: 66 YFEQITGGKTVPRIFFGK 83
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGP--QGPQLQKLLE 129
+E V + VVV+ K C Y + + +L ++ ++E ++ ++Q L+
Sbjct: 3 QEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQ 62
Query: 130 RLTGQHTVPNVFIGK 144
+LTG TVP VFIGK
Sbjct: 63 QLTGARTVPRVFIGK 77
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143
V++Y++ C Y + K L R G E E+D P+L+ ++ +G++T P +FIG
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAE--FNEIDASAT--PELRAEMQERSGRNTFPQIFIG 63
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGP--QLQKLLERLT 132
V + VVV+ K C + + + L +L + ++E ++ ++Q L++LT
Sbjct: 5 VNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLT 64
Query: 133 GQHTVPNVFIGK 144
G TVP VFIGK
Sbjct: 65 GARTVPRVFIGK 76
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143
+++Y++ C Y + L + GV+ I+ Q++++R G++T P +FIG
Sbjct: 8 IILYTRPNCPYCKRARDLLDKKGVKYTDID-----ASTSLRQEMVQRANGRNTFPQIFIG 62
>pdb|3F0I|A Chain A, Arsenate Reductase From Vibrio Cholerae.
pdb|3F0I|B Chain B, Arsenate Reductase From Vibrio Cholerae
Length = 119
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131
VV+Y CS S E L + G+ P VI+ E P +L++L ++L
Sbjct: 6 VVIYHNPKCSKSRETLALLENQGIAPQVIKYLETSPSVEELKRLYQQL 53
>pdb|1Y0L|L Chain L, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|A Chain A, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|C Chain C, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|E Chain E, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y18|L Chain L, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|A Chain A, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|C Chain C, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|E Chain E, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|3CFJ|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFK|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|G Chain G, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|J Chain J, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|M Chain M, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|O Chain O, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
Length = 216
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 7 LTQFTSLSLNPSRSLSHIPTSNPGLVTANNYYTFSSR------TSLSVNGRRRRYGAVSV 60
+TQ ++L+ +P +++ S+ G VT +NY T+ T L + G +R V
Sbjct: 4 VTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGL-IGGTNKRAPGVPA 62
Query: 61 QAMASSYGSRLEESVKKTVSENPVVVYSKTWCS----YSSEVKLLFKRLGVEPLVI 112
+ S G R ++ +E+ + + W S + KL KR P V
Sbjct: 63 RFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVF 118
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142
V +Y+K C YS K L GV + +D + +++++R +G+ TVP +FI
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPID---GNAAKREEMIKR-SGRTTVPQIFI 57
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142
V +Y+K C Y K L GV + +D + +++++R +G+ TVP +FI
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPID---GNAAKREEMIKR-SGRTTVPQIFI 57
>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From
Synechococcus Sp
Length = 106
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLE 129
+Y WC + + K LF + +E GP PQ Q+ E
Sbjct: 18 MYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTE 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,963,654
Number of Sequences: 62578
Number of extensions: 136603
Number of successful extensions: 362
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 70
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)