Query 032250
Match_columns 144
No_of_seqs 132 out of 1246
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1752 Glutaredoxin and relat 99.8 7.4E-21 1.6E-25 138.0 9.3 72 72-144 4-75 (104)
2 TIGR02189 GlrX-like_plant Glut 99.8 5.6E-21 1.2E-25 136.3 8.1 69 75-144 1-69 (99)
3 PHA03050 glutaredoxin; Provisi 99.8 1.7E-20 3.7E-25 136.2 9.7 72 72-144 3-77 (108)
4 PRK10824 glutaredoxin-4; Provi 99.8 6.9E-20 1.5E-24 134.9 9.4 71 70-144 3-78 (115)
5 TIGR00365 monothiol glutaredox 99.8 2.1E-19 4.5E-24 127.7 9.1 68 73-144 3-75 (97)
6 cd03028 GRX_PICOT_like Glutare 99.8 1.2E-18 2.7E-23 121.6 7.9 66 75-144 1-71 (90)
7 COG0695 GrxC Glutaredoxin and 99.7 5.7E-18 1.2E-22 116.7 8.2 60 83-144 2-61 (80)
8 PF00462 Glutaredoxin: Glutare 99.7 1.8E-17 4E-22 106.8 6.9 57 84-144 1-57 (60)
9 TIGR02190 GlrX-dom Glutaredoxi 99.7 5.4E-17 1.2E-21 110.4 7.9 62 78-144 4-65 (79)
10 PTZ00062 glutaredoxin; Provisi 99.7 7E-17 1.5E-21 129.1 9.7 74 67-144 98-176 (204)
11 PRK10638 glutaredoxin 3; Provi 99.7 2.3E-16 5E-21 107.9 8.2 59 82-144 2-60 (83)
12 cd03029 GRX_hybridPRX5 Glutare 99.7 2.4E-16 5.2E-21 104.8 7.7 57 83-144 2-58 (72)
13 cd03027 GRX_DEP Glutaredoxin ( 99.7 4.3E-16 9.3E-21 103.9 7.8 58 83-144 2-59 (73)
14 TIGR02181 GRX_bact Glutaredoxi 99.6 5.3E-16 1.2E-20 104.4 7.5 57 84-144 1-57 (79)
15 cd03418 GRX_GRXb_1_3_like Glut 99.6 8E-16 1.7E-20 101.9 7.9 58 83-144 1-59 (75)
16 TIGR02180 GRX_euk Glutaredoxin 99.6 1.3E-15 2.9E-20 102.1 7.6 60 84-144 1-62 (84)
17 cd03419 GRX_GRXh_1_2_like Glut 99.6 1.9E-15 4.1E-20 101.3 8.2 61 83-144 1-61 (82)
18 cd02066 GRX_family Glutaredoxi 99.6 4.8E-15 1E-19 95.1 7.9 58 83-144 1-58 (72)
19 PRK11200 grxA glutaredoxin 1; 99.6 5.4E-15 1.2E-19 101.4 7.5 58 83-144 2-66 (85)
20 TIGR02194 GlrX_NrdH Glutaredox 99.6 8E-15 1.7E-19 97.8 7.1 56 84-144 1-56 (72)
21 TIGR02183 GRXA Glutaredoxin, G 99.6 9.5E-15 2E-19 101.2 7.5 57 84-144 2-65 (86)
22 PRK10329 glutaredoxin-like pro 99.6 1.4E-14 2.9E-19 100.0 7.5 57 83-144 2-58 (81)
23 PRK12759 bifunctional gluaredo 99.5 9.2E-14 2E-18 120.6 7.7 63 81-144 1-68 (410)
24 cd03031 GRX_GRX_like Glutaredo 99.5 2.2E-13 4.9E-18 104.1 7.8 58 83-144 1-68 (147)
25 TIGR02196 GlrX_YruB Glutaredox 99.4 7.4E-13 1.6E-17 85.4 7.5 58 83-144 1-58 (74)
26 TIGR02200 GlrX_actino Glutared 99.4 1.2E-12 2.6E-17 86.2 7.9 58 83-144 1-59 (77)
27 COG0278 Glutaredoxin-related p 99.4 1.8E-12 3.8E-17 93.7 8.0 71 70-144 3-79 (105)
28 cd02976 NrdH NrdH-redoxin (Nrd 99.3 6.1E-12 1.3E-16 81.1 8.0 58 83-144 1-58 (73)
29 cd02973 TRX_GRX_like Thioredox 99.3 1.1E-11 2.3E-16 80.6 5.9 54 83-144 2-60 (67)
30 KOG0911 Glutaredoxin-related p 99.1 4.6E-10 1E-14 91.1 8.1 70 71-144 128-202 (227)
31 cd03041 GST_N_2GST_N GST_N fam 98.9 8.3E-09 1.8E-13 69.3 7.2 55 84-142 2-56 (77)
32 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 6E-09 1.3E-13 72.9 6.8 67 70-144 2-73 (89)
33 cd03040 GST_N_mPGES2 GST_N fam 98.9 1E-08 2.2E-13 68.2 7.1 54 83-143 1-54 (77)
34 cd00570 GST_N_family Glutathio 98.9 1.1E-08 2.4E-13 64.0 6.9 56 85-144 2-57 (71)
35 cd02977 ArsC_family Arsenate R 98.9 6.3E-09 1.4E-13 74.0 6.0 48 84-131 1-48 (105)
36 cd03036 ArsC_like Arsenate Red 98.8 6E-09 1.3E-13 75.4 5.8 48 84-131 1-48 (111)
37 TIGR00411 redox_disulf_1 small 98.8 1.1E-08 2.4E-13 68.0 6.1 56 83-144 2-61 (82)
38 cd03030 GRX_SH3BGR Glutaredoxi 98.8 2E-08 4.3E-13 71.3 7.3 57 84-144 2-68 (92)
39 cd03060 GST_N_Omega_like GST_N 98.8 2.3E-08 5E-13 65.8 6.0 54 85-143 2-55 (71)
40 cd02975 PfPDO_like_N Pyrococcu 98.7 2.5E-08 5.5E-13 72.0 6.1 64 71-142 11-81 (113)
41 cd03051 GST_N_GTT2_like GST_N 98.7 2.4E-08 5.2E-13 64.8 5.4 58 84-143 1-58 (74)
42 PRK01655 spxA transcriptional 98.7 2.5E-08 5.5E-13 74.4 6.2 48 84-131 2-49 (131)
43 cd03037 GST_N_GRX2 GST_N famil 98.7 5E-08 1.1E-12 64.0 6.3 53 85-143 2-54 (71)
44 TIGR00412 redox_disulf_2 small 98.7 5.5E-08 1.2E-12 65.7 6.6 51 84-144 3-57 (76)
45 cd03045 GST_N_Delta_Epsilon GS 98.7 4.6E-08 1E-12 64.1 5.7 59 84-144 1-59 (74)
46 cd03032 ArsC_Spx Arsenate Redu 98.7 5.8E-08 1.3E-12 70.5 6.1 48 84-131 2-49 (115)
47 TIGR01617 arsC_related transcr 98.7 4.3E-08 9.3E-13 71.3 5.3 48 84-131 1-48 (117)
48 PRK13344 spxA transcriptional 98.7 7.5E-08 1.6E-12 72.1 6.6 49 84-132 2-50 (132)
49 cd03035 ArsC_Yffb Arsenate Red 98.6 7.6E-08 1.6E-12 69.4 6.1 48 84-131 1-48 (105)
50 cd03059 GST_N_SspA GST_N famil 98.6 7.5E-08 1.6E-12 62.8 5.4 56 84-144 1-56 (73)
51 PRK12559 transcriptional regul 98.6 9.3E-08 2E-12 71.5 6.4 48 84-131 2-49 (131)
52 cd03055 GST_N_Omega GST_N fami 98.6 1.5E-07 3.2E-12 65.0 6.6 58 81-143 16-73 (89)
53 PHA02125 thioredoxin-like prot 98.6 1.9E-07 4.1E-12 62.6 5.9 50 84-141 2-51 (75)
54 cd03056 GST_N_4 GST_N family, 98.6 2.3E-07 5.1E-12 60.2 6.0 59 84-144 1-59 (73)
55 cd03033 ArsC_15kD Arsenate Red 98.5 2.5E-07 5.4E-12 67.7 6.4 49 83-131 1-49 (113)
56 PF05768 DUF836: Glutaredoxin- 98.5 3.6E-07 7.8E-12 62.5 6.7 53 83-144 1-57 (81)
57 PF13417 GST_N_3: Glutathione 98.4 7.8E-07 1.7E-11 59.2 5.8 54 86-144 1-54 (75)
58 TIGR01295 PedC_BrcD bacterioci 98.4 3.1E-06 6.7E-11 62.2 8.9 70 73-142 14-96 (122)
59 cd02953 DsbDgamma DsbD gamma f 98.4 1.9E-06 4.1E-11 60.1 7.0 65 74-142 3-78 (104)
60 TIGR02187 GlrX_arch Glutaredox 98.3 1.7E-06 3.8E-11 68.5 7.0 65 72-144 125-194 (215)
61 cd03052 GST_N_GDAP1 GST_N fami 98.3 2E-06 4.4E-11 57.5 5.6 59 84-144 1-59 (73)
62 cd01659 TRX_superfamily Thiore 98.3 2.7E-06 5.9E-11 50.4 5.5 56 84-144 1-61 (69)
63 cd03053 GST_N_Phi GST_N family 98.2 3.8E-06 8.3E-11 55.3 6.3 59 84-144 2-60 (76)
64 TIGR03140 AhpF alkyl hydropero 98.2 1.1E-06 2.4E-11 77.8 4.3 75 67-144 104-178 (515)
65 KOG3029 Glutathione S-transfer 98.2 3.5E-06 7.6E-11 71.3 6.8 65 73-144 78-144 (370)
66 TIGR01616 nitro_assoc nitrogen 98.2 4.3E-06 9.2E-11 62.4 6.4 49 83-131 2-50 (126)
67 PRK15317 alkyl hydroperoxide r 98.2 1.4E-06 3E-11 77.2 4.4 70 67-144 103-177 (517)
68 cd02947 TRX_family TRX family; 98.2 7.4E-06 1.6E-10 53.4 6.8 53 82-142 12-69 (93)
69 PRK10853 putative reductase; P 98.2 4.4E-06 9.6E-11 61.5 6.0 48 84-131 2-49 (118)
70 COG1393 ArsC Arsenate reductas 98.2 6.3E-06 1.4E-10 60.8 6.5 50 83-132 2-51 (117)
71 TIGR00014 arsC arsenate reduct 98.2 5E-06 1.1E-10 60.5 5.9 48 84-131 1-48 (114)
72 PF13192 Thioredoxin_3: Thiore 98.1 7E-06 1.5E-10 55.2 5.8 51 84-144 3-57 (76)
73 PHA02278 thioredoxin-like prot 98.1 1.9E-05 4.2E-10 56.5 8.0 56 83-142 17-78 (103)
74 cd02994 PDI_a_TMX PDIa family, 98.1 1.1E-05 2.4E-10 55.7 6.5 60 75-142 11-77 (101)
75 cd03034 ArsC_ArsC Arsenate Red 98.1 7.7E-06 1.7E-10 59.3 5.9 48 84-131 1-48 (112)
76 cd02954 DIM1 Dim1 family; Dim1 98.1 9.6E-06 2.1E-10 59.7 6.4 52 83-142 17-74 (114)
77 PRK10026 arsenate reductase; P 98.1 1E-05 2.2E-10 61.7 6.5 50 82-131 2-51 (141)
78 cd02949 TRX_NTR TRX domain, no 98.1 1.7E-05 3.8E-10 54.8 7.0 51 84-142 17-73 (97)
79 cd02985 TRX_CDSP32 TRX family, 98.1 2.5E-05 5.3E-10 55.0 7.8 55 83-142 18-77 (103)
80 cd03058 GST_N_Tau GST_N family 98.1 1.3E-05 2.9E-10 52.7 6.0 56 84-144 1-57 (74)
81 cd03042 GST_N_Zeta GST_N famil 98.1 1.2E-05 2.6E-10 52.2 5.4 58 85-144 2-59 (73)
82 PTZ00051 thioredoxin; Provisio 98.0 3.6E-05 7.8E-10 52.6 8.0 62 73-142 9-77 (98)
83 TIGR03143 AhpF_homolog putativ 98.0 1.9E-05 4.1E-10 70.8 7.6 70 67-144 463-537 (555)
84 cd03061 GST_N_CLIC GST_N famil 98.0 1.2E-05 2.6E-10 57.0 5.0 50 90-144 20-69 (91)
85 cd02951 SoxW SoxW family; SoxW 98.0 3E-05 6.5E-10 55.8 6.6 69 73-142 4-90 (125)
86 cd03038 GST_N_etherase_LigE GS 97.9 1.8E-05 4E-10 53.4 5.0 51 90-143 14-64 (84)
87 cd02996 PDI_a_ERp44 PDIa famil 97.9 3.9E-05 8.4E-10 53.8 6.7 60 75-142 11-84 (108)
88 cd03050 GST_N_Theta GST_N fami 97.9 3.1E-05 6.7E-10 51.2 5.8 59 84-144 1-59 (76)
89 cd02959 ERp19 Endoplasmic reti 97.9 3.6E-05 7.7E-10 56.0 6.5 47 71-117 8-62 (117)
90 cd03003 PDI_a_ERdj5_N PDIa fam 97.9 5.2E-05 1.1E-09 52.5 7.0 52 83-142 21-78 (101)
91 cd02989 Phd_like_TxnDC9 Phosdu 97.9 5.7E-05 1.2E-09 54.5 7.3 52 83-142 25-81 (113)
92 cd03049 GST_N_3 GST_N family, 97.9 3.5E-05 7.5E-10 50.5 5.3 53 85-142 2-56 (73)
93 TIGR02187 GlrX_arch Glutaredox 97.9 4.4E-05 9.6E-10 60.5 6.7 62 75-142 14-83 (215)
94 cd02999 PDI_a_ERp44_like PDIa 97.9 8.7E-05 1.9E-09 52.3 7.5 54 84-142 22-78 (100)
95 PF00085 Thioredoxin: Thioredo 97.9 6.8E-05 1.5E-09 50.8 6.7 54 83-142 20-77 (103)
96 cd03076 GST_N_Pi GST_N family, 97.9 7.3E-05 1.6E-09 49.5 6.6 57 83-144 1-57 (73)
97 cd03039 GST_N_Sigma_like GST_N 97.8 5E-05 1.1E-09 49.6 5.6 56 85-144 2-57 (72)
98 KOG2824 Glutaredoxin-related p 97.8 1.9E-05 4.2E-10 66.0 4.4 61 80-144 129-199 (281)
99 cd03054 GST_N_Metaxin GST_N fa 97.8 5.8E-05 1.2E-09 49.5 5.8 42 91-144 15-56 (72)
100 cd02956 ybbN ybbN protein fami 97.8 4.9E-05 1.1E-09 51.8 5.7 54 83-142 15-72 (96)
101 cd02984 TRX_PICOT TRX domain, 97.8 5E-05 1.1E-09 51.7 5.6 54 83-142 17-74 (97)
102 cd03004 PDI_a_ERdj5_C PDIa fam 97.8 0.00012 2.7E-09 50.6 7.6 52 83-142 22-79 (104)
103 KOG0910 Thioredoxin-like prote 97.8 9.1E-05 2E-09 57.1 7.4 63 72-142 51-121 (150)
104 cd03048 GST_N_Ure2p_like GST_N 97.8 7.8E-05 1.7E-09 49.8 6.1 57 84-143 2-58 (81)
105 COG4545 Glutaredoxin-related p 97.8 7.9E-05 1.7E-09 51.8 6.0 59 83-144 3-72 (85)
106 cd02961 PDI_a_family Protein D 97.8 0.00019 4.2E-09 47.7 7.6 63 74-142 7-77 (101)
107 cd03002 PDI_a_MPD1_like PDI fa 97.8 8.8E-05 1.9E-09 51.5 6.1 54 83-142 21-80 (109)
108 PRK09481 sspA stringent starva 97.8 6.8E-05 1.5E-09 58.6 6.1 57 83-144 10-66 (211)
109 cd02993 PDI_a_APS_reductase PD 97.8 0.00014 3E-09 51.4 7.2 55 82-142 23-84 (109)
110 cd02950 TxlA TRX-like protein 97.7 0.00012 2.6E-09 54.8 6.8 53 84-142 24-82 (142)
111 PRK10387 glutaredoxin 2; Provi 97.7 9.7E-05 2.1E-09 56.9 6.1 53 84-142 1-53 (210)
112 TIGR01068 thioredoxin thioredo 97.7 0.00014 3E-09 49.0 6.2 53 82-142 16-74 (101)
113 PF03960 ArsC: ArsC family; I 97.7 8.1E-05 1.8E-09 53.3 5.3 46 87-132 1-46 (110)
114 cd03000 PDI_a_TMX3 PDIa family 97.7 6.5E-05 1.4E-09 52.5 4.5 64 73-142 7-78 (104)
115 PRK09381 trxA thioredoxin; Pro 97.7 0.00016 3.6E-09 50.5 6.5 52 83-142 24-81 (109)
116 cd03047 GST_N_2 GST_N family, 97.7 0.00016 3.6E-09 47.4 5.9 58 85-144 2-59 (73)
117 cd02963 TRX_DnaJ TRX domain, D 97.7 0.00013 2.8E-09 52.0 5.8 52 83-142 27-85 (111)
118 PF13409 GST_N_2: Glutathione 97.7 4.9E-05 1.1E-09 50.2 3.3 51 91-142 1-51 (70)
119 cd03044 GST_N_EF1Bgamma GST_N 97.6 0.00013 2.8E-09 48.3 5.2 56 85-143 2-57 (75)
120 cd02957 Phd_like Phosducin (Ph 97.6 0.0001 2.2E-09 52.6 5.1 52 84-142 28-82 (113)
121 PF13098 Thioredoxin_2: Thiore 97.6 9.8E-05 2.1E-09 51.6 4.8 61 82-143 7-89 (112)
122 TIGR01126 pdi_dom protein disu 97.6 7.7E-05 1.7E-09 50.6 4.2 54 83-142 16-75 (102)
123 cd02948 TRX_NDPK TRX domain, T 97.6 0.0001 2.3E-09 51.6 4.7 60 76-142 11-77 (102)
124 cd03006 PDI_a_EFP1_N PDIa fami 97.6 0.00016 3.4E-09 52.7 5.7 57 79-142 26-90 (113)
125 cd02955 SSP411 TRX domain, SSP 97.6 0.00042 9E-09 51.4 8.0 67 74-142 7-86 (124)
126 PRK15113 glutathione S-transfe 97.6 0.0002 4.4E-09 56.0 6.6 61 82-144 4-66 (214)
127 cd03001 PDI_a_P5 PDIa family, 97.6 0.00034 7.4E-09 47.8 7.0 54 83-142 21-78 (103)
128 PRK10996 thioredoxin 2; Provis 97.6 0.00039 8.4E-09 51.8 7.7 63 74-142 44-112 (139)
129 cd03080 GST_N_Metaxin_like GST 97.6 0.00025 5.4E-09 47.0 5.9 49 84-144 2-57 (75)
130 cd02998 PDI_a_ERp38 PDIa famil 97.6 0.00019 4.1E-09 48.9 5.4 55 83-142 21-81 (105)
131 cd03005 PDI_a_ERp46 PDIa famil 97.6 0.00025 5.4E-09 48.4 6.0 54 83-142 19-79 (102)
132 cd02997 PDI_a_PDIR PDIa family 97.5 0.00012 2.6E-09 50.0 4.2 56 83-142 20-81 (104)
133 cd02952 TRP14_like Human TRX-r 97.5 0.0002 4.4E-09 52.9 5.4 58 84-142 25-96 (119)
134 TIGR02182 GRXB Glutaredoxin, G 97.5 0.0002 4.3E-09 56.2 5.5 53 86-144 2-55 (209)
135 cd03057 GST_N_Beta GST_N famil 97.5 0.00029 6.3E-09 46.5 5.5 56 85-143 2-57 (77)
136 PF14595 Thioredoxin_9: Thiore 97.5 5.6E-05 1.2E-09 56.4 2.1 69 69-142 30-103 (129)
137 PRK13728 conjugal transfer pro 97.5 0.00029 6.4E-09 55.7 6.0 60 83-142 72-142 (181)
138 TIGR02740 TraF-like TraF-like 97.4 0.00044 9.4E-09 57.4 6.6 70 73-142 159-235 (271)
139 PF13899 Thioredoxin_7: Thiore 97.4 0.00056 1.2E-08 46.1 5.5 65 71-142 6-79 (82)
140 cd02962 TMX2 TMX2 family; comp 97.3 0.00073 1.6E-08 51.8 6.4 51 84-142 51-114 (152)
141 PLN00410 U5 snRNP protein, DIM 97.3 0.0006 1.3E-08 52.0 5.6 50 83-140 26-82 (142)
142 PF13728 TraF: F plasmid trans 97.3 0.00053 1.2E-08 55.1 5.5 73 70-142 110-189 (215)
143 cd02995 PDI_a_PDI_a'_C PDIa fa 97.3 0.001 2.2E-08 45.2 6.2 53 83-142 21-79 (104)
144 cd02965 HyaE HyaE family; HyaE 97.3 0.00075 1.6E-08 49.5 5.7 56 79-142 26-89 (111)
145 cd03043 GST_N_1 GST_N family, 97.2 0.00096 2.1E-08 44.2 5.4 53 89-144 7-59 (73)
146 PLN02817 glutathione dehydroge 97.2 0.0011 2.3E-08 54.8 6.9 68 68-144 53-120 (265)
147 cd02986 DLP Dim1 family, Dim1- 97.2 0.0016 3.5E-08 48.1 6.9 50 84-141 18-73 (114)
148 PLN02473 glutathione S-transfe 97.2 0.00095 2.1E-08 51.7 5.9 59 84-144 3-61 (214)
149 cd02992 PDI_a_QSOX PDIa family 97.2 0.0011 2.4E-08 47.6 5.9 56 83-142 22-84 (114)
150 cd03046 GST_N_GTT1_like GST_N 97.2 0.0012 2.5E-08 43.0 5.2 57 85-144 2-58 (76)
151 KOG0907 Thioredoxin [Posttrans 97.1 0.00065 1.4E-08 49.2 4.1 51 84-142 25-80 (106)
152 PF04908 SH3BGR: SH3-binding, 97.1 0.0015 3.3E-08 47.0 5.9 57 84-144 3-74 (99)
153 TIGR02738 TrbB type-F conjugat 97.1 0.002 4.3E-08 49.3 6.7 63 80-142 50-124 (153)
154 PLN02378 glutathione S-transfe 97.1 0.0011 2.3E-08 52.1 5.2 50 90-144 18-67 (213)
155 TIGR00862 O-ClC intracellular 97.1 0.0016 3.4E-08 53.2 6.3 50 90-144 17-66 (236)
156 cd03009 TryX_like_TryX_NRX Try 97.0 0.0029 6.3E-08 45.5 6.7 57 83-142 21-105 (131)
157 cd03065 PDI_b_Calsequestrin_N 97.0 0.0019 4.1E-08 47.7 5.6 61 74-142 18-93 (120)
158 cd02987 Phd_like_Phd Phosducin 96.9 0.0013 2.8E-08 51.1 4.5 52 84-142 87-141 (175)
159 cd02964 TryX_like_family Trypa 96.9 0.0039 8.5E-08 45.2 6.7 57 83-142 20-105 (132)
160 KOG0406 Glutathione S-transfer 96.9 0.0026 5.7E-08 52.2 6.1 58 82-144 8-66 (231)
161 PRK00293 dipZ thiol:disulfide 96.9 0.0053 1.1E-07 55.8 8.5 70 69-142 461-540 (571)
162 PRK13972 GSH-dependent disulfi 96.9 0.0032 7E-08 49.1 6.2 56 84-142 2-57 (215)
163 PTZ00443 Thioredoxin domain-co 96.9 0.0039 8.5E-08 50.6 6.8 54 83-142 55-112 (224)
164 TIGR00424 APS_reduc 5'-adenyly 96.8 0.0041 8.8E-08 55.6 7.1 53 84-142 375-434 (463)
165 TIGR01130 ER_PDI_fam protein d 96.8 0.0045 9.7E-08 52.6 7.1 63 74-142 10-81 (462)
166 cd03008 TryX_like_RdCVF Trypar 96.8 0.0076 1.6E-07 46.0 7.6 21 84-104 29-49 (146)
167 cd03010 TlpA_like_DsbE TlpA-li 96.8 0.0053 1.1E-07 43.8 6.2 23 83-105 28-50 (127)
168 PTZ00102 disulphide isomerase; 96.7 0.0047 1E-07 53.3 6.9 63 74-142 41-112 (477)
169 TIGR01262 maiA maleylacetoacet 96.7 0.002 4.4E-08 49.6 4.2 58 86-144 2-59 (210)
170 COG0625 Gst Glutathione S-tran 96.7 0.0028 6E-08 49.2 4.9 57 85-144 2-58 (211)
171 PLN02309 5'-adenylylsulfate re 96.7 0.006 1.3E-07 54.4 7.5 54 83-142 368-428 (457)
172 COG2999 GrxB Glutaredoxin 2 [P 96.7 0.0017 3.6E-08 52.1 3.3 50 86-141 3-52 (215)
173 cd02967 mauD Methylamine utili 96.6 0.0054 1.2E-07 42.7 5.3 55 83-140 24-82 (114)
174 PRK11752 putative S-transferas 96.5 0.0063 1.4E-07 49.7 6.0 62 79-143 40-107 (264)
175 TIGR02739 TraF type-F conjugat 96.5 0.0058 1.3E-07 50.8 5.8 72 71-142 141-219 (256)
176 cd02988 Phd_like_VIAF Phosduci 96.5 0.0084 1.8E-07 47.4 6.4 74 52-142 78-158 (192)
177 cd02982 PDI_b'_family Protein 96.5 0.0061 1.3E-07 41.7 4.9 55 82-142 14-74 (103)
178 cd03011 TlpA_like_ScsD_MtbDsbE 96.5 0.0091 2E-07 42.1 5.8 25 81-105 21-45 (123)
179 PRK15412 thiol:disulfide inter 96.5 0.012 2.6E-07 45.5 6.9 45 83-130 71-118 (185)
180 PLN02395 glutathione S-transfe 96.5 0.0076 1.7E-07 46.6 5.8 58 84-144 3-60 (215)
181 PRK10357 putative glutathione 96.5 0.0053 1.2E-07 47.1 4.8 54 85-143 2-55 (202)
182 COG3118 Thioredoxin domain-con 96.4 0.011 2.3E-07 50.3 6.9 64 71-142 33-103 (304)
183 PRK13703 conjugal pilus assemb 96.4 0.0074 1.6E-07 49.9 5.8 70 71-142 134-212 (248)
184 cd02958 UAS UAS family; UAS is 96.4 0.024 5.2E-07 40.2 7.6 68 71-142 6-82 (114)
185 cd02972 DsbA_family DsbA famil 96.3 0.016 3.5E-07 38.0 6.0 61 84-144 1-91 (98)
186 smart00594 UAS UAS domain. 96.3 0.033 7.1E-07 40.4 7.8 68 71-142 16-92 (122)
187 cd03077 GST_N_Alpha GST_N fami 96.1 0.026 5.6E-07 37.8 6.3 57 84-144 2-59 (79)
188 TIGR02661 MauD methylamine deh 96.1 0.023 5E-07 44.2 6.8 30 84-113 78-111 (189)
189 cd02966 TlpA_like_family TlpA- 96.1 0.02 4.3E-07 38.3 5.6 36 81-116 20-62 (116)
190 PF13905 Thioredoxin_8: Thiore 95.9 0.031 6.7E-07 37.7 6.0 47 84-131 5-57 (95)
191 TIGR00385 dsbE periplasmic pro 95.9 0.035 7.5E-07 42.3 6.8 33 83-115 66-101 (173)
192 PF02798 GST_N: Glutathione S- 95.8 0.025 5.3E-07 37.6 5.0 56 84-143 3-59 (76)
193 PTZ00062 glutaredoxin; Provisi 95.8 0.013 2.9E-07 47.0 4.3 56 73-142 7-68 (204)
194 PRK03147 thiol-disulfide oxido 95.7 0.041 8.8E-07 41.0 6.4 22 82-103 63-84 (173)
195 PF06110 DUF953: Eukaryotic pr 95.7 0.046 9.9E-07 40.6 6.4 68 70-141 7-94 (119)
196 KOG2501 Thioredoxin, nucleored 95.7 0.051 1.1E-06 42.3 6.9 46 84-130 37-89 (157)
197 PRK10877 protein disulfide iso 95.6 0.025 5.5E-07 45.8 5.3 31 83-113 110-143 (232)
198 PTZ00102 disulphide isomerase; 95.6 0.0098 2.1E-07 51.3 3.0 52 83-142 378-437 (477)
199 KOG3425 Uncharacterized conser 95.5 0.026 5.7E-07 42.4 4.5 54 63-116 7-75 (128)
200 cd03007 PDI_a_ERp29_N PDIa fam 95.4 0.09 2E-06 38.7 7.3 66 74-142 10-86 (116)
201 cd03012 TlpA_like_DipZ_like Tl 95.4 0.086 1.9E-06 37.7 7.0 21 83-103 26-46 (126)
202 PF08534 Redoxin: Redoxin; In 95.2 0.11 2.4E-06 37.7 7.1 47 80-130 27-82 (146)
203 cd02960 AGR Anterior Gradient 95.0 0.038 8.3E-07 41.6 4.3 46 71-116 12-66 (130)
204 KOG0867 Glutathione S-transfer 95.0 0.048 1E-06 43.7 5.1 60 83-144 2-61 (226)
205 PTZ00056 glutathione peroxidas 94.8 0.085 1.8E-06 41.6 5.9 56 83-140 42-108 (199)
206 cd03075 GST_N_Mu GST_N family, 94.7 0.15 3.2E-06 34.4 6.2 57 86-144 3-65 (82)
207 PF06764 DUF1223: Protein of u 94.7 0.021 4.5E-07 45.9 2.2 61 84-144 2-78 (202)
208 PRK11657 dsbG disulfide isomer 94.5 0.072 1.6E-06 43.6 5.1 32 83-114 120-155 (251)
209 KOG0190 Protein disulfide isom 94.4 0.091 2E-06 47.5 5.8 64 73-142 33-105 (493)
210 PTZ00256 glutathione peroxidas 94.4 0.14 3E-06 39.5 6.1 55 85-140 46-111 (183)
211 cd03020 DsbA_DsbC_DsbG DsbA fa 94.3 0.047 1E-06 42.4 3.4 34 81-114 78-113 (197)
212 COG2143 Thioredoxin-related pr 94.3 0.16 3.4E-06 40.1 6.1 72 71-142 31-121 (182)
213 TIGR01130 ER_PDI_fam protein d 94.2 0.072 1.6E-06 45.3 4.6 49 84-142 368-425 (462)
214 cd00340 GSH_Peroxidase Glutath 94.1 0.12 2.7E-06 38.3 5.1 56 83-140 25-91 (152)
215 PTZ00057 glutathione s-transfe 94.0 0.15 3.3E-06 39.5 5.7 59 83-144 4-66 (205)
216 KOG0908 Thioredoxin-like prote 94.0 0.092 2E-06 44.1 4.6 51 83-141 24-79 (288)
217 PF00578 AhpC-TSA: AhpC/TSA fa 94.0 0.18 3.9E-06 35.2 5.5 46 82-131 27-80 (124)
218 PLN02412 probable glutathione 93.9 0.24 5.2E-06 37.7 6.4 57 84-141 33-100 (167)
219 cd02970 PRX_like2 Peroxiredoxi 93.7 0.23 5E-06 35.6 5.7 52 83-140 26-85 (149)
220 PLN02399 phospholipid hydroper 93.6 0.21 4.5E-06 40.9 6.0 57 82-139 101-168 (236)
221 PRK14018 trifunctional thiored 93.4 0.25 5.3E-06 45.0 6.6 22 84-105 60-81 (521)
222 KOG1422 Intracellular Cl- chan 93.3 0.16 3.5E-06 41.5 4.7 49 91-144 20-68 (221)
223 PLN02919 haloacid dehalogenase 93.2 0.29 6.4E-06 47.7 7.2 23 83-105 423-445 (1057)
224 PHA03075 glutaredoxin-like pro 92.9 0.14 3.1E-06 38.3 3.6 34 82-115 3-36 (123)
225 PRK10542 glutathionine S-trans 92.9 0.2 4.4E-06 38.1 4.7 56 85-143 2-58 (201)
226 COG4232 Thiol:disulfide interc 92.9 0.24 5.3E-06 45.5 5.9 65 74-142 464-540 (569)
227 cd02968 SCO SCO (an acronym fo 92.8 0.58 1.3E-05 33.5 6.7 50 82-131 24-84 (142)
228 cd02971 PRX_family Peroxiredox 92.6 0.45 9.8E-06 33.9 5.9 56 80-140 21-85 (140)
229 TIGR01626 ytfJ_HI0045 conserve 92.6 0.36 7.8E-06 38.2 5.8 38 80-117 59-105 (184)
230 cd02969 PRX_like1 Peroxiredoxi 92.6 0.52 1.1E-05 35.4 6.5 35 82-116 27-68 (171)
231 KOG0868 Glutathione S-transfer 92.4 0.17 3.8E-06 40.7 3.8 59 83-144 5-65 (217)
232 cd03017 PRX_BCP Peroxiredoxin 92.2 0.79 1.7E-05 32.7 6.7 52 81-138 23-83 (140)
233 COG0526 TrxA Thiol-disulfide i 91.9 0.14 2.9E-06 33.2 2.3 18 88-105 40-57 (127)
234 TIGR03143 AhpF_homolog putativ 91.7 0.45 9.7E-06 42.9 6.1 64 71-142 357-425 (555)
235 TIGR02540 gpx7 putative glutat 91.6 0.62 1.3E-05 34.5 5.8 17 84-100 26-42 (153)
236 KOG0191 Thioredoxin/protein di 91.2 0.69 1.5E-05 39.6 6.5 57 80-142 47-107 (383)
237 cd03018 PRX_AhpE_like Peroxire 91.1 0.82 1.8E-05 33.0 6.0 20 84-103 32-52 (149)
238 PRK09437 bcp thioredoxin-depen 91.1 1 2.3E-05 33.0 6.6 55 80-140 29-92 (154)
239 PF06953 ArsD: Arsenical resis 90.6 0.61 1.3E-05 34.8 4.9 62 81-144 1-80 (123)
240 COG3019 Predicted metal-bindin 90.2 0.66 1.4E-05 35.8 4.8 38 80-117 24-61 (149)
241 cd03023 DsbA_Com1_like DsbA fa 89.9 0.28 6.2E-06 35.1 2.6 24 81-104 6-29 (154)
242 cd03015 PRX_Typ2cys Peroxiredo 89.8 1.3 2.8E-05 33.5 6.3 36 81-116 29-73 (173)
243 COG3634 AhpF Alkyl hydroperoxi 89.8 0.87 1.9E-05 40.5 5.8 72 67-144 103-177 (520)
244 COG5429 Uncharacterized secret 89.2 0.58 1.3E-05 39.0 4.1 61 84-144 45-121 (261)
245 PF03190 Thioredox_DsbH: Prote 89.0 1.1 2.5E-05 34.9 5.5 55 85-141 42-107 (163)
246 cd03079 GST_N_Metaxin2 GST_N f 88.7 1.2 2.6E-05 30.2 4.8 44 90-144 15-58 (74)
247 PF07315 DUF1462: Protein of u 88.6 1.6 3.4E-05 31.3 5.4 59 85-144 1-75 (93)
248 cd03014 PRX_Atyp2cys Peroxired 88.6 2.2 4.7E-05 30.8 6.5 23 81-103 26-50 (143)
249 PF11009 DUF2847: Protein of u 87.1 3.9 8.4E-05 29.8 6.9 59 80-142 18-84 (105)
250 PRK13599 putative peroxiredoxi 86.5 1.3 2.9E-05 35.4 4.7 32 85-116 34-72 (215)
251 cd03016 PRX_1cys Peroxiredoxin 86.4 1.4 3.1E-05 34.5 4.7 35 82-116 26-69 (203)
252 PRK13190 putative peroxiredoxi 86.0 1.8 3.8E-05 34.1 5.0 35 82-116 28-71 (202)
253 TIGR03137 AhpC peroxiredoxin. 85.9 3.2 6.9E-05 32.1 6.4 36 81-116 31-75 (187)
254 KOG0190 Protein disulfide isom 85.8 0.36 7.8E-06 43.7 1.1 26 84-109 388-413 (493)
255 KOG4277 Uncharacterized conser 85.6 0.69 1.5E-05 40.3 2.7 70 69-141 31-105 (468)
256 PRK10606 btuE putative glutath 85.2 2.8 6.1E-05 32.9 5.8 58 82-140 27-94 (183)
257 COG5494 Predicted thioredoxin/ 85.0 1.8 3.9E-05 35.8 4.7 54 83-144 12-67 (265)
258 cd03019 DsbA_DsbA DsbA family, 84.1 1 2.3E-05 33.3 2.8 23 81-103 16-38 (178)
259 KOG0191 Thioredoxin/protein di 81.2 2.9 6.3E-05 35.8 4.8 56 81-142 163-224 (383)
260 PRK15000 peroxidase; Provision 81.0 4.9 0.00011 31.6 5.7 37 80-116 33-78 (200)
261 cd03078 GST_N_Metaxin1_like GS 81.0 4.3 9.3E-05 26.9 4.6 26 90-115 14-39 (73)
262 PRK00522 tpx lipid hydroperoxi 81.0 7.7 0.00017 29.3 6.6 46 83-130 47-96 (167)
263 PF13905 Thioredoxin_8: Thiore 80.1 14 0.00031 24.3 8.1 64 73-142 25-88 (95)
264 PF13462 Thioredoxin_4: Thiore 80.0 2 4.4E-05 31.1 3.0 36 81-116 13-56 (162)
265 PRK13189 peroxiredoxin; Provis 79.8 4.1 8.9E-05 32.7 5.0 36 81-116 35-79 (222)
266 PRK13191 putative peroxiredoxi 79.5 4.1 8.9E-05 32.5 4.9 32 86-117 40-78 (215)
267 PTZ00137 2-Cys peroxiredoxin; 78.5 9.8 0.00021 31.7 7.0 41 76-116 93-142 (261)
268 PRK10382 alkyl hydroperoxide r 76.7 10 0.00022 29.7 6.3 36 81-116 31-75 (187)
269 COG4837 Uncharacterized protei 76.1 10 0.00023 27.5 5.6 64 80-144 3-82 (106)
270 KOG4244 Failed axon connection 74.9 6.8 0.00015 33.2 5.0 39 78-116 40-85 (281)
271 TIGR03759 conj_TIGR03759 integ 74.1 14 0.0003 29.9 6.5 47 80-127 108-154 (200)
272 KOG0912 Thiol-disulfide isomer 73.1 3.4 7.4E-05 35.9 2.9 59 74-140 5-76 (375)
273 cd08183 Fe-ADH2 Iron-containin 71.0 24 0.00051 30.2 7.6 57 72-131 15-71 (374)
274 KOG4420 Uncharacterized conser 67.7 2.2 4.7E-05 36.4 0.6 62 78-141 21-82 (325)
275 cd02974 AhpF_NTD_N Alkyl hydro 67.1 11 0.00023 26.6 3.9 35 70-105 9-43 (94)
276 PF04134 DUF393: Protein of un 66.6 8.1 0.00018 26.9 3.3 31 86-116 1-33 (114)
277 KOG1695 Glutathione S-transfer 65.9 21 0.00045 28.8 5.9 57 83-144 3-59 (206)
278 PF05673 DUF815: Protein of un 65.6 22 0.00048 29.6 6.1 63 80-144 51-114 (249)
279 PF01323 DSBA: DSBA-like thior 65.4 6.2 0.00013 29.5 2.7 34 83-116 1-39 (193)
280 PF11287 DUF3088: Protein of u 64.7 13 0.00029 27.4 4.2 47 91-144 23-76 (112)
281 cd08193 HVD 5-hydroxyvalerate 64.4 36 0.00078 29.0 7.4 49 82-131 27-79 (376)
282 cd08192 Fe-ADH7 Iron-containin 63.9 38 0.00082 28.8 7.5 49 82-131 25-77 (370)
283 cd02991 UAS_ETEA UAS family, E 63.9 38 0.00083 24.4 6.5 64 72-142 7-82 (116)
284 cd03013 PRX5_like Peroxiredoxi 63.4 28 0.00061 26.0 5.9 37 80-116 28-75 (155)
285 TIGR01162 purE phosphoribosyla 62.4 25 0.00053 27.4 5.5 47 84-131 3-49 (156)
286 TIGR01689 EcbF-BcbF capsule bi 61.4 31 0.00067 25.6 5.7 50 67-116 25-87 (126)
287 PF00004 AAA: ATPase family as 60.7 12 0.00026 25.7 3.2 34 84-117 1-34 (132)
288 cd08194 Fe-ADH6 Iron-containin 59.8 47 0.001 28.4 7.4 49 82-131 24-76 (375)
289 cd08170 GlyDH Glycerol dehydro 59.6 45 0.00097 28.1 7.1 58 71-131 14-73 (351)
290 TIGR00385 dsbE periplasmic pro 59.1 38 0.00083 25.5 6.0 52 84-143 93-145 (173)
291 cd08185 Fe-ADH1 Iron-containin 58.6 49 0.0011 28.3 7.3 48 82-130 26-78 (380)
292 PF06053 DUF929: Domain of unk 58.6 7.6 0.00016 32.3 2.2 20 83-102 61-80 (249)
293 TIGR03140 AhpF alkyl hydropero 58.3 15 0.00032 32.7 4.2 35 70-105 9-43 (515)
294 cd08186 Fe-ADH8 Iron-containin 57.7 52 0.0011 28.2 7.3 48 82-130 27-79 (383)
295 PF10865 DUF2703: Domain of un 56.9 31 0.00068 25.6 5.0 45 91-144 14-69 (120)
296 PTZ00253 tryparedoxin peroxida 54.9 38 0.00083 26.2 5.5 36 82-117 37-81 (199)
297 COG2761 FrnE Predicted dithiol 54.8 21 0.00045 29.4 4.1 51 83-133 7-68 (225)
298 cd08551 Fe-ADH iron-containing 54.7 64 0.0014 27.3 7.3 39 92-131 37-76 (370)
299 PF03227 GILT: Gamma interfero 54.0 20 0.00043 25.5 3.5 16 83-98 2-17 (108)
300 KOG4023 Uncharacterized conser 53.8 24 0.00053 25.8 3.9 46 97-143 23-73 (108)
301 cd08182 HEPD Hydroxyethylphosp 53.2 74 0.0016 27.0 7.5 48 82-130 24-72 (367)
302 PRK15317 alkyl hydroperoxide r 53.1 17 0.00038 32.2 3.7 35 70-105 9-43 (517)
303 COG1651 DsbG Protein-disulfide 53.1 55 0.0012 25.7 6.3 34 81-114 85-123 (244)
304 cd08171 GlyDH-like2 Glycerol d 52.8 67 0.0014 27.1 7.1 49 82-130 23-73 (345)
305 TIGR03865 PQQ_CXXCW PQQ-depend 52.8 36 0.00079 25.8 5.0 36 80-116 115-150 (162)
306 cd03025 DsbA_FrnE_like DsbA fa 52.1 9.9 0.00021 28.5 1.8 21 83-103 2-22 (193)
307 PF10087 DUF2325: Uncharacteri 52.1 75 0.0016 21.8 6.4 54 73-130 40-95 (97)
308 PF09822 ABC_transp_aux: ABC-t 50.5 71 0.0015 25.8 6.6 66 69-138 14-90 (271)
309 cd08176 LPO Lactadehyde:propan 49.2 72 0.0016 27.3 6.8 49 82-131 29-81 (377)
310 COG1651 DsbG Protein-disulfide 49.1 13 0.00028 29.3 2.1 23 83-105 121-143 (244)
311 PF00282 Pyridoxal_deC: Pyrido 48.9 76 0.0016 27.3 6.9 60 81-142 139-199 (373)
312 cd08188 Fe-ADH4 Iron-containin 48.9 87 0.0019 26.8 7.2 49 82-131 29-81 (377)
313 PRK13342 recombination factor 48.2 66 0.0014 27.8 6.5 60 82-143 37-99 (413)
314 cd08187 BDH Butanol dehydrogen 47.6 86 0.0019 26.8 7.0 48 82-130 29-81 (382)
315 KOG3857 Alcohol dehydrogenase, 47.6 2.1E+02 0.0046 25.7 9.5 65 64-128 50-120 (465)
316 PF06897 DUF1269: Protein of u 47.2 41 0.0009 24.1 4.3 61 67-129 40-100 (102)
317 cd03022 DsbA_HCCA_Iso DsbA fam 46.9 13 0.00029 27.7 1.7 47 97-144 125-175 (192)
318 KOG1731 FAD-dependent sulfhydr 46.8 8.1 0.00017 35.9 0.6 64 73-142 47-122 (606)
319 PF00532 Peripla_BP_1: Peripla 46.7 1.3E+02 0.0028 24.3 7.7 74 64-144 12-87 (279)
320 PRK10624 L-1,2-propanediol oxi 46.7 1E+02 0.0023 26.4 7.4 48 82-130 31-82 (382)
321 KOG0913 Thiol-disulfide isomer 46.5 8.2 0.00018 32.2 0.6 44 74-117 33-83 (248)
322 PRK15454 ethanol dehydrogenase 46.1 1E+02 0.0022 26.8 7.3 47 82-129 50-100 (395)
323 COG1454 EutG Alcohol dehydroge 45.3 1.4E+02 0.0031 26.2 8.1 65 67-131 12-82 (377)
324 TIGR02638 lactal_redase lactal 45.3 96 0.0021 26.5 7.0 48 82-130 30-81 (379)
325 PRK10954 periplasmic protein d 44.2 15 0.00032 28.7 1.7 20 81-100 38-57 (207)
326 PRK04195 replication factor C 44.2 1.6E+02 0.0034 26.2 8.3 36 81-116 39-74 (482)
327 PF13462 Thioredoxin_4: Thiore 43.6 24 0.00051 25.4 2.6 14 131-144 131-144 (162)
328 cd08179 NADPH_BDH NADPH-depend 43.5 1.1E+02 0.0024 26.1 7.1 56 73-130 16-76 (375)
329 cd08189 Fe-ADH5 Iron-containin 43.2 1.2E+02 0.0026 25.9 7.2 48 82-130 27-78 (374)
330 cd01444 GlpE_ST GlpE sulfurtra 43.0 76 0.0017 20.7 4.9 38 70-108 45-82 (96)
331 COG2607 Predicted ATPase (AAA+ 41.8 1.3E+02 0.0028 25.7 6.9 63 80-144 84-147 (287)
332 cd07766 DHQ_Fe-ADH Dehydroquin 41.1 1.5E+02 0.0033 24.5 7.4 49 82-131 24-74 (332)
333 TIGR02263 benz_CoA_red_C benzo 40.9 68 0.0015 27.7 5.4 45 73-117 311-362 (380)
334 TIGR00635 ruvB Holliday juncti 40.8 1.1E+02 0.0024 24.7 6.4 57 83-143 32-88 (305)
335 PRK03600 nrdI ribonucleotide r 40.7 90 0.002 23.2 5.4 64 68-131 59-128 (134)
336 cd03022 DsbA_HCCA_Iso DsbA fam 40.6 26 0.00055 26.1 2.4 29 84-112 1-33 (192)
337 cd08175 G1PDH Glycerol-1-phosp 40.2 2E+02 0.0042 24.2 8.0 50 82-131 24-77 (348)
338 PRK08118 topology modulation p 39.9 1.1E+02 0.0024 23.0 5.9 32 82-113 2-33 (167)
339 cd08190 HOT Hydroxyacid-oxoaci 39.7 1.7E+02 0.0038 25.4 7.8 48 82-130 24-75 (414)
340 cd08181 PPD-like 1,3-propanedi 39.2 1.6E+02 0.0035 24.9 7.4 48 82-130 26-78 (357)
341 PF00465 Fe-ADH: Iron-containi 38.9 58 0.0012 27.5 4.6 59 70-131 13-74 (366)
342 PF00731 AIRC: AIR carboxylase 38.8 57 0.0012 25.1 4.1 43 89-132 10-52 (150)
343 cd08550 GlyDH-like Glycerol_de 38.7 1.6E+02 0.0035 24.8 7.3 37 93-130 36-72 (349)
344 TIGR03439 methyl_EasF probable 38.4 1.1E+02 0.0025 26.0 6.3 48 89-142 82-134 (319)
345 cd01520 RHOD_YbbB Member of th 38.4 1E+02 0.0022 21.9 5.3 36 79-116 84-119 (128)
346 KOG1734 Predicted RING-contain 37.3 15 0.00033 31.4 0.8 15 84-98 265-279 (328)
347 cd03024 DsbA_FrnE DsbA family, 37.1 24 0.00052 26.6 1.8 20 84-103 1-20 (201)
348 PF15643 Tox-PL-2: Papain fold 36.9 43 0.00094 24.3 3.0 41 71-116 5-46 (100)
349 PF12689 Acid_PPase: Acid Phos 36.9 1.6E+02 0.0035 22.8 6.5 72 70-144 49-132 (169)
350 PRK09860 putative alcohol dehy 36.8 1.6E+02 0.0034 25.4 7.0 48 82-130 32-83 (383)
351 PRK11509 hydrogenase-1 operon 36.6 55 0.0012 24.6 3.7 43 92-142 48-97 (132)
352 PF09413 DUF2007: Domain of un 36.5 34 0.00074 21.7 2.3 32 85-116 2-33 (67)
353 PF02780 Transketolase_C: Tran 36.1 57 0.0012 23.1 3.6 37 81-117 9-46 (124)
354 PRK09423 gldA glycerol dehydro 35.8 1.9E+02 0.0042 24.5 7.3 48 82-130 30-79 (366)
355 cd02127 PA_hPAP21_like PA_hPAP 35.0 87 0.0019 22.7 4.4 31 81-112 34-64 (118)
356 COG3340 PepE Peptidase E [Amin 34.8 78 0.0017 26.1 4.5 57 72-130 21-84 (224)
357 cd01524 RHOD_Pyr_redox Member 34.7 1.3E+02 0.0029 19.6 5.4 43 71-116 41-83 (90)
358 cd08191 HHD 6-hydroxyhexanoate 34.5 2.2E+02 0.0048 24.4 7.6 32 82-113 23-57 (386)
359 PRK15412 thiol:disulfide inter 34.2 1E+02 0.0022 23.4 5.0 53 83-143 97-150 (185)
360 cd04911 ACT_AKiii-YclM-BS_1 AC 33.9 38 0.00081 23.2 2.2 21 92-112 15-35 (76)
361 PRK10954 periplasmic protein d 33.4 46 0.00099 25.9 2.9 48 96-144 124-175 (207)
362 TIGR03190 benz_CoA_bzdN benzoy 33.0 1.4E+02 0.0031 25.7 6.1 45 73-117 303-354 (377)
363 PF07014 Hs1pro-1_C: Hs1pro-1 32.4 74 0.0016 26.5 4.0 41 90-132 128-177 (261)
364 cd08173 Gro1PDH Sn-glycerol-1- 32.4 3E+02 0.0065 23.0 8.0 47 82-131 26-74 (339)
365 PF00763 THF_DHG_CYH: Tetrahyd 32.1 1.9E+02 0.0042 20.7 7.0 66 70-136 15-87 (117)
366 PF07728 AAA_5: AAA domain (dy 31.9 84 0.0018 22.2 3.9 35 83-117 1-35 (139)
367 cd04816 PA_SaNapH_like PA_SaNa 31.8 1.3E+02 0.0027 21.4 4.8 31 81-112 43-73 (122)
368 PF01522 Polysacc_deac_1: Poly 31.7 43 0.00094 22.9 2.3 35 74-109 88-122 (123)
369 smart00852 MoCF_biosynth Proba 31.0 1.8E+02 0.0038 20.8 5.6 35 96-132 21-55 (135)
370 KOG4598 Putative ubiquitin-spe 30.9 38 0.00082 32.9 2.4 52 73-134 1046-1097(1203)
371 KOG2603 Oligosaccharyltransfer 30.7 95 0.0021 27.0 4.6 51 84-142 64-132 (331)
372 COG2179 Predicted hydrolase of 30.7 2.8E+02 0.006 22.1 7.4 61 65-131 45-106 (175)
373 cd05295 MDH_like Malate dehydr 29.7 93 0.002 28.1 4.5 50 89-141 1-58 (452)
374 cd03129 GAT1_Peptidase_E_like 29.3 2.7E+02 0.0058 21.5 8.0 60 70-130 17-80 (210)
375 TIGR02260 benz_CoA_red_B benzo 28.7 1.7E+02 0.0038 25.7 6.0 55 72-126 339-404 (413)
376 PF14437 MafB19-deam: MafB19-l 28.7 1.8E+02 0.0038 22.5 5.3 35 81-115 99-136 (146)
377 cd05565 PTS_IIB_lactose PTS_II 28.4 1.8E+02 0.0038 20.6 5.0 20 124-143 60-79 (99)
378 COG1331 Highly conserved prote 28.1 1.7E+02 0.0038 27.8 6.1 67 74-140 35-112 (667)
379 PF03215 Rad17: Rad17 cell cyc 27.7 1.3E+02 0.0028 27.5 5.2 44 68-111 28-75 (519)
380 cd02123 PA_C_RZF_like PA_C-RZF 27.3 1.1E+02 0.0025 23.0 4.1 59 80-143 66-126 (153)
381 COG3011 Predicted thiol-disulf 27.2 2.1E+02 0.0046 21.8 5.5 35 82-116 8-44 (137)
382 PRK00440 rfc replication facto 27.0 3.3E+02 0.0071 21.8 7.3 37 69-105 23-62 (319)
383 cd03021 DsbA_GSTK DsbA family, 26.5 84 0.0018 24.3 3.3 28 83-110 2-33 (209)
384 TIGR01917 gly_red_sel_B glycin 26.4 96 0.0021 27.9 4.0 54 52-109 306-367 (431)
385 cd00009 AAA The AAA+ (ATPases 26.4 2E+02 0.0043 19.1 7.5 35 82-116 20-57 (151)
386 PRK09212 pyruvate dehydrogenas 26.3 1.5E+02 0.0032 25.1 5.0 47 82-128 202-250 (327)
387 KOG0914 Thioredoxin-like prote 26.0 75 0.0016 26.6 3.0 57 84-142 148-211 (265)
388 cd04813 PA_1 PA_1: Protease-as 26.0 1.7E+02 0.0036 21.1 4.6 59 81-143 39-98 (117)
389 KOG3460 Small nuclear ribonucl 26.0 1.1E+02 0.0023 21.7 3.4 30 108-144 49-78 (91)
390 PRK10558 alpha-dehydro-beta-de 25.8 2E+02 0.0044 23.6 5.6 67 73-140 8-74 (256)
391 KOG2454 Betaine aldehyde dehyd 25.6 48 0.001 30.1 2.0 43 74-116 209-256 (583)
392 PHA00729 NTP-binding motif con 25.6 1.6E+02 0.0034 24.1 4.9 24 83-106 19-42 (226)
393 PF14424 Toxin-deaminase: The 25.5 1.6E+02 0.0034 22.0 4.5 24 82-105 97-121 (133)
394 PF08599 Nbs1_C: DNA damage re 25.1 41 0.00089 22.6 1.1 46 35-80 2-47 (65)
395 COG2608 CopZ Copper chaperone 24.5 2.1E+02 0.0045 18.6 5.0 45 91-136 12-67 (71)
396 cd08178 AAD_C C-terminal alcoh 24.4 4.3E+02 0.0093 22.7 7.6 49 82-131 22-74 (398)
397 TIGR01686 FkbH FkbH-like domai 24.4 4.1E+02 0.0089 22.0 7.9 69 71-143 36-110 (320)
398 TIGR01918 various_sel_PB selen 24.0 1.1E+02 0.0024 27.6 3.9 57 52-109 306-367 (431)
399 TIGR01241 FtsH_fam ATP-depende 23.8 3E+02 0.0066 24.4 6.7 32 83-114 90-121 (495)
400 TIGR03420 DnaA_homol_Hda DnaA 23.8 3.2E+02 0.007 20.7 6.2 46 71-116 25-76 (226)
401 cd01449 TST_Repeat_2 Thiosulfa 23.7 1.8E+02 0.0039 19.8 4.3 38 70-108 65-104 (118)
402 KOG3414 Component of the U4/U6 23.2 2.4E+02 0.0052 21.6 5.1 38 68-105 11-48 (142)
403 TIGR00011 YbaK_EbsC ybaK/ebsC 23.0 1.6E+02 0.0035 21.6 4.2 21 97-117 2-22 (152)
404 cd04335 PrdX_deacylase This CD 23.0 3.1E+02 0.0066 20.1 5.7 22 96-117 2-23 (156)
405 cd00755 YgdL_like Family of ac 22.9 1.1E+02 0.0023 24.8 3.4 23 86-108 150-172 (231)
406 TIGR00334 5S_RNA_mat_M5 ribonu 22.9 3.8E+02 0.0083 21.1 9.6 87 45-132 5-109 (174)
407 PHA02544 44 clamp loader, smal 22.8 3.7E+02 0.008 21.7 6.6 64 51-116 11-78 (316)
408 smart00450 RHOD Rhodanese Homo 22.7 2.1E+02 0.0045 18.0 4.9 29 80-109 55-83 (100)
409 PRK00080 ruvB Holliday junctio 22.4 4E+02 0.0087 22.0 6.9 58 82-143 52-109 (328)
410 PRK11892 pyruvate dehydrogenas 21.9 1.5E+02 0.0032 26.7 4.4 47 82-128 341-389 (464)
411 CHL00144 odpB pyruvate dehydro 21.9 2.4E+02 0.0053 23.9 5.5 38 82-119 202-240 (327)
412 PF08442 ATP-grasp_2: ATP-gras 21.8 85 0.0018 25.0 2.6 45 97-144 6-52 (202)
413 cd01521 RHOD_PspE2 Member of t 21.5 2.3E+02 0.005 19.3 4.5 37 78-116 61-98 (110)
414 PRK06756 flavodoxin; Provision 21.5 3.2E+02 0.0069 19.7 5.6 40 69-108 67-116 (148)
415 cd04333 ProX_deacylase This CD 20.8 1.7E+02 0.0037 21.3 3.9 21 96-116 2-22 (148)
416 PTZ00182 3-methyl-2-oxobutanat 20.7 1.8E+02 0.0038 25.1 4.5 48 81-128 233-282 (355)
417 PLN02590 probable tyrosine dec 20.7 3.6E+02 0.0078 24.7 6.7 59 82-142 228-292 (539)
418 PF13344 Hydrolase_6: Haloacid 20.6 2.4E+02 0.0052 19.4 4.4 60 71-133 19-79 (101)
419 TIGR03191 benz_CoA_bzdO benzoy 20.5 2E+02 0.0044 25.4 4.9 47 72-118 350-403 (430)
420 TIGR01650 PD_CobS cobaltochela 20.5 3.9E+02 0.0085 23.0 6.5 44 74-117 57-100 (327)
421 TIGR03438 probable methyltrans 20.3 1.9E+02 0.0041 23.9 4.5 28 89-116 69-98 (301)
422 CHL00195 ycf46 Ycf46; Provisio 20.2 2.4E+02 0.0052 25.5 5.4 35 81-115 259-293 (489)
423 TIGR02928 orc1/cdc6 family rep 20.1 4E+02 0.0086 22.0 6.4 23 82-104 41-63 (365)
No 1
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.4e-21 Score=137.97 Aligned_cols=72 Identities=56% Similarity=0.905 Sum_probs=69.4
Q ss_pred HHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 72 ~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.+++++++.+++|+||+|++||||+++|.+|.+.++++.++|+|++ +++.++|++|.+++|++|||+|||||
T Consensus 4 ~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP~vFI~G 75 (104)
T KOG1752|consen 4 EAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDED-EDGSEIQKALKKLTGQRTVPNVFIGG 75 (104)
T ss_pred HHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCC-CCcHHHHHHHHHhcCCCCCCEEEECC
Confidence 4689999999999999999999999999999999999999999998 79999999999999999999999997
No 2
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.84 E-value=5.6e-21 Score=136.29 Aligned_cols=69 Identities=41% Similarity=0.698 Sum_probs=64.0
Q ss_pred HHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 75 v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
++++|++++|+||+++|||||++||++|+++|++|+++|||++ +++.++++++.+.+|++|||+|||||
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~-~~~~~~~~~l~~~tg~~tvP~Vfi~g 69 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKE-PAGKDIENALSRLGCSPAVPAVFVGG 69 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCC-ccHHHHHHHHHHhcCCCCcCeEEECC
Confidence 4678999999999999999999999999999999999999986 56777888999999999999999997
No 3
>PHA03050 glutaredoxin; Provisional
Probab=99.84 E-value=1.7e-20 Score=136.23 Aligned_cols=72 Identities=25% Similarity=0.548 Sum_probs=66.9
Q ss_pred HHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCC---CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 72 ~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv---~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
++++++++++++|+||+++|||||++||++|+++|+ +|+++|+++. .++.++++++.+.+|++|||+|||||
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~-~~~~~~~~~l~~~tG~~tVP~IfI~g 77 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEF-KPENELRDYFEQITGGRTVPRIFFGK 77 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCC-CCCHHHHHHHHHHcCCCCcCEEEECC
Confidence 579999999999999999999999999999999999 7999999975 35678899999999999999999997
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=99.82 E-value=6.9e-20 Score=134.94 Aligned_cols=71 Identities=18% Similarity=0.424 Sum_probs=66.3
Q ss_pred HHHHHHHhhhcCCCEEEEEeC-----CChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 70 RLEESVKKTVSENPVVVYSKT-----WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 70 ~~~~~v~~~i~~~~VvvYsks-----~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.+.++++++|.+++|+||+|. +||||++||++|+++|++|.++|++++ ++++++|.+.+|++|||||||||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d----~~~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN----PDIRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC----HHHHHHHHHHhCCCCCCeEEECC
Confidence 467899999999999999994 999999999999999999999999874 57899999999999999999997
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.80 E-value=2.1e-19 Score=127.75 Aligned_cols=68 Identities=26% Similarity=0.534 Sum_probs=63.6
Q ss_pred HHHHhhhcCCCEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 73 ESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 73 ~~v~~~i~~~~VvvYsk-----s~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+++++++.+++|+||+| +|||||.+||++|+++|++|+++|++++ ++.++++++.+|++|||+|||||
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~----~~~~~~l~~~tg~~tvP~vfi~g 75 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED----PEIRQGIKEYSNWPTIPQLYVKG 75 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC----HHHHHHHHHHhCCCCCCEEEECC
Confidence 68999999999999998 8999999999999999999999999864 57888999999999999999997
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.77 E-value=1.2e-18 Score=121.64 Aligned_cols=66 Identities=27% Similarity=0.531 Sum_probs=60.9
Q ss_pred HHhhhcCCCEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 75 VKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 75 v~~~i~~~~VvvYsk-----s~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+++++++++|+||++ +|||||++||++|+++|++|+++|++++ +++++++.+.+|+.|||+|||||
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~----~~~~~~l~~~~g~~tvP~vfi~g 71 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED----EEVRQGLKEYSNWPTFPQLYVNG 71 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC----HHHHHHHHHHhCCCCCCEEEECC
Confidence 467899999999999 6999999999999999999999999874 67889999999999999999997
No 7
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.7e-18 Score=116.74 Aligned_cols=60 Identities=35% Similarity=0.640 Sum_probs=54.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.|+||++++||||++||++|+++|++|++++++.+ ...+.++++.+..|++|||+|||||
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~--~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDD--EPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCC--cHHHHHHHHHHhCCCCCcCEEEECC
Confidence 68999999999999999999999999999999986 3357778888888999999999996
No 8
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.72 E-value=1.8e-17 Score=106.75 Aligned_cols=57 Identities=35% Similarity=0.596 Sum_probs=53.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
|++|++++||+|+++|++|+++|++|+++|++++ ++.++++++.+|..++|+|||||
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~----~~~~~~l~~~~g~~~~P~v~i~g 57 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDED----EEAREELKELSGVRTVPQVFIDG 57 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGS----HHHHHHHHHHHSSSSSSEEEETT
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccc----hhHHHHHHHHcCCCccCEEEECC
Confidence 7899999999999999999999999999999985 46788888888999999999997
No 9
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.70 E-value=5.4e-17 Score=110.40 Aligned_cols=62 Identities=32% Similarity=0.507 Sum_probs=53.5
Q ss_pred hhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 78 TVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 78 ~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+-.+++|+||+++|||||++||++|+++|++|+++|++++ .+ .+++.+.+|..+||+|||||
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~----~~-~~~~~~~~g~~~vP~i~i~g 65 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND----AR-GRSLRAVTGATTVPQVFIGG 65 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC----hH-HHHHHHHHCCCCcCeEEECC
Confidence 3467899999999999999999999999999999999874 12 23456678999999999997
No 10
>PTZ00062 glutaredoxin; Provisional
Probab=99.70 E-value=7e-17 Score=129.12 Aligned_cols=74 Identities=18% Similarity=0.384 Sum_probs=68.3
Q ss_pred cchHHHHHHHhhhcCCCEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 67 YGSRLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 67 ~~~~~~~~v~~~i~~~~VvvYsk-----s~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
.++++.++++++|++++|+||+| ++||||+++|++|+++|++|.++|++++ ++.+++|++++|++|||+||
T Consensus 98 ~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d----~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 98 SSEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED----PDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC----HHHHHHHHHHhCCCCCCeEE
Confidence 34568899999999999999999 6999999999999999999999999974 57889999999999999999
Q ss_pred ECC
Q 032250 142 IGK 144 (144)
Q Consensus 142 I~G 144 (144)
|||
T Consensus 174 I~G 176 (204)
T PTZ00062 174 VNG 176 (204)
T ss_pred ECC
Confidence 997
No 11
>PRK10638 glutaredoxin 3; Provisional
Probab=99.67 E-value=2.3e-16 Score=107.90 Aligned_cols=59 Identities=27% Similarity=0.469 Sum_probs=53.8
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.+|++|++++||||++||.+|+++|++|+++|+++. .+.++++.+.+|+.+||+||+||
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~----~~~~~~l~~~~g~~~vP~i~~~g 60 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGD----AAKREEMIKRSGRTTVPQIFIDA 60 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCC----HHHHHHHHHHhCCCCcCEEEECC
Confidence 479999999999999999999999999999999874 34667788899999999999987
No 12
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.67 E-value=2.4e-16 Score=104.76 Aligned_cols=57 Identities=28% Similarity=0.449 Sum_probs=50.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|+||++++||||.+||++|+++|++|+++|++++ .+ .+++.+.+|..+||+|||||
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~----~~-~~~~~~~~g~~~vP~ifi~g 58 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKD----IT-GRSLRAVTGAMTVPQVFIDG 58 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCC----hh-HHHHHHHhCCCCcCeEEECC
Confidence 69999999999999999999999999999999975 12 34567778999999999997
No 13
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.66 E-value=4.3e-16 Score=103.93 Aligned_cols=58 Identities=29% Similarity=0.571 Sum_probs=53.3
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|++|++++||+|++|+++|+++|++|+.+|++++ ++.++++.+++|..++|+|||||
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~----~~~~~el~~~~g~~~vP~v~i~~ 59 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF----PERKAELEERTGSSVVPQIFFNE 59 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC----HHHHHHHHHHhCCCCcCEEEECC
Confidence 68999999999999999999999999999999985 45677888888999999999997
No 14
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.65 E-value=5.3e-16 Score=104.42 Aligned_cols=57 Identities=35% Similarity=0.685 Sum_probs=51.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
|+||++++||+|++||++|+++|++|+++|++.+ ++.++++.+.+|+.++|+|||||
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~----~~~~~~~~~~~g~~~vP~i~i~g 57 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGD----PALRDEMMQRSGRRTVPQIFIGD 57 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCC----HHHHHHHHHHhCCCCcCEEEECC
Confidence 6899999999999999999999999999999975 45667778888999999999997
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.64 E-value=8e-16 Score=101.92 Aligned_cols=58 Identities=34% Similarity=0.623 Sum_probs=50.3
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCC-eeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQH-TVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~-TVP~VFI~G 144 (144)
+|+||++++||+|.+||.+|+++|++|+++|++.+ ++.++++.+..|.. +||+|||||
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~----~~~~~~~~~~~~~~~~vP~v~i~g 59 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD----PALREEMINRSGGRRTVPQIFIGD 59 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC----HHHHHHHHHHhCCCCccCEEEECC
Confidence 58999999999999999999999999999999974 34555666666777 999999997
No 16
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.63 E-value=1.3e-15 Score=102.13 Aligned_cols=60 Identities=45% Similarity=0.839 Sum_probs=54.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC--cEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVE--PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~--y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
|++|+++|||+|++++.+|++++++ |+.++++.. ++..++++++.+.+|..++|+|||||
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~-~~~~~~~~~l~~~~g~~~vP~v~i~g 62 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQL-SNGSEIQDYLEEITGQRTVPNIFING 62 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCC-CChHHHHHHHHHHhCCCCCCeEEECC
Confidence 6899999999999999999999999 999999986 35667788899999999999999997
No 17
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.63 E-value=1.9e-15 Score=101.35 Aligned_cols=61 Identities=56% Similarity=0.986 Sum_probs=55.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|++|+++|||+|++++.+|++++++|++++++.. ++..+.++.+++.+|+.++|+||+||
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~g~~~~P~v~~~g 61 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQH-EDGSEIQDYLQELTGQRTVPNVFIGG 61 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCC-CChHHHHHHHHHHhCCCCCCeEEECC
Confidence 58999999999999999999999999999999986 34567778888999999999999987
No 18
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.60 E-value=4.8e-15 Score=95.12 Aligned_cols=58 Identities=40% Similarity=0.615 Sum_probs=53.0
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|++|++++||+|++++.+|++++++|+.+|+++. ++.++++.+.+|..++|++|+||
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~----~~~~~~l~~~~~~~~~P~~~~~~ 58 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED----GELREELKELSGWPTVPQIFING 58 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC----HHHHHHHHHHhCCCCcCEEEECC
Confidence 58999999999999999999999999999999875 34678888889999999999986
No 19
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.59 E-value=5.4e-15 Score=101.37 Aligned_cols=58 Identities=24% Similarity=0.478 Sum_probs=49.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHh-----cCCCcEEEEecCCCCCcHHHHHHHHHhcCC--CeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKR-----LGVEPLVIELDEMGPQGPQLQKLLERLTGQ--HTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e-----~gv~y~~vdld~~~~d~~eiqe~L~~~~G~--~TVP~VFI~G 144 (144)
+|+||+++|||+|++|+++|++ .|++|+++|++++ +.+ ++.+.+..|+ .+||+|||||
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~---~~~-~~el~~~~~~~~~~vP~ifi~g 66 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAE---GIS-KADLEKTVGKPVETVPQIFVDQ 66 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCC---hHH-HHHHHHHHCCCCCcCCEEEECC
Confidence 6899999999999999999999 7999999999974 333 3456666665 8999999997
No 20
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.57 E-value=8e-15 Score=97.79 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=49.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
|+||++++||+|++||++|+++|++|+++|++++ ++..+.+++. |..+||+||++|
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~----~~~~~~~~~~-g~~~vP~v~~~g 56 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQ----PEAIDYVKAQ-GFRQVPVIVADG 56 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCC----HHHHHHHHHc-CCcccCEEEECC
Confidence 5799999999999999999999999999999975 3455666665 899999999975
No 21
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.57 E-value=9.5e-15 Score=101.16 Aligned_cols=57 Identities=30% Similarity=0.569 Sum_probs=46.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCCcHHHHHHHHHhcCC--CeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLG-----VEPLVIELDEMGPQGPQLQKLLERLTGQ--HTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~g-----v~y~~vdld~~~~d~~eiqe~L~~~~G~--~TVP~VFI~G 144 (144)
|+||+++|||||.+||++|++++ ++|+.+|++.+ +.+ ++++.+.+|+ .+||+|||||
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~---~~~-~~~l~~~~g~~~~tVP~ifi~g 65 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE---GIS-KADLEKTVGKPVETVPQIFVDE 65 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC---HHH-HHHHHHHhCCCCCCcCeEEECC
Confidence 78999999999999999999985 56888888753 223 3456777776 8999999997
No 22
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.56 E-value=1.4e-14 Score=99.99 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=49.5
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|+||++++||||+++|++|+++|++|+++|++++ ++..+.+.. .|+.+||+|++||
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~----~~~~~~~~~-~g~~~vPvv~i~~ 58 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV----PEAAETLRA-QGFRQLPVVIAGD 58 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC----HHHHHHHHH-cCCCCcCEEEECC
Confidence 68999999999999999999999999999999974 344455555 4999999999986
No 23
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.47 E-value=9.2e-14 Score=120.61 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=50.2
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHH-----HHhcCCCeeeEEEECC
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLL-----ERLTGQHTVPNVFIGK 144 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L-----~~~~G~~TVP~VFI~G 144 (144)
+.+|+||+++|||||++||++|+++|++|+++|||++ ++..++.+.+ .+.+|.+|||+|||||
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~-~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~ 68 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD-VKRAEFYAEVNKNILLVEEHIRTVPQIFVGD 68 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC-hhHHHHHHHHhhccccccCCCCccCeEEECC
Confidence 3579999999999999999999999999999999975 2222332222 2336899999999997
No 24
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.46 E-value=2.2e-13 Score=104.07 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=50.9
Q ss_pred CEEEEEeC------CChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCC----CeeeEEEECC
Q 032250 83 PVVVYSKT------WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ----HTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks------~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~----~TVP~VFI~G 144 (144)
+|+||+++ +||||.+||++|++++++|+++||+.+ .+.+++|.+..|. .++|+|||||
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~----~~~~~EL~~~~g~~~~~~tvPqVFI~G 68 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD----SGFREELRELLGAELKAVSLPRVFVDG 68 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC----HHHHHHHHHHhCCCCCCCCCCEEEECC
Confidence 58999999 999999999999999999999999975 4566667776554 9999999997
No 25
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.43 E-value=7.4e-13 Score=85.43 Aligned_cols=58 Identities=24% Similarity=0.474 Sum_probs=49.5
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|++|+.+|||+|++++.+|++.+++|..+|+++. ++..+++.+..|..++|+++++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~----~~~~~~~~~~~~~~~vP~~~~~~ 58 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD----SAAREEVLKVLGQRGVPVIVIGH 58 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC----HHHHHHHHHHhCCCcccEEEECC
Confidence 48899999999999999999999999999999874 33445555666999999999986
No 26
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.41 E-value=1.2e-12 Score=86.17 Aligned_cols=58 Identities=24% Similarity=0.517 Sum_probs=49.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhc-CCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT-GQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~-G~~TVP~VFI~G 144 (144)
+|++|+++|||+|++++.+|+++|++|+.+|+++. .+..+.+.+.+ |..++|+|+++|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~----~~~~~~~~~~~~~~~~vP~i~~~~ 59 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED----EGAADRVVSVNNGNMTVPTVKFAD 59 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC----HhHHHHHHHHhCCCceeCEEEECC
Confidence 48999999999999999999999999999999874 34455666665 899999998754
No 27
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.8e-12 Score=93.74 Aligned_cols=71 Identities=21% Similarity=0.503 Sum_probs=66.3
Q ss_pred HHHHHHHhhhcCCCEEEEEe-----CCChhHHHHHHHHHhcC-CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 70 RLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLG-VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 70 ~~~~~v~~~i~~~~VvvYsk-----s~CPyC~rAK~lL~e~g-v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
++.+++++.|+.++|++|-| |.|+|+.+|.++|...| ++|..+||-++ +++++.|+++.+|+|+||++|+
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d----~eiR~~lk~~s~WPT~PQLyi~ 78 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD----PEIRQGLKEYSNWPTFPQLYVN 78 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC----HHHHhccHhhcCCCCCceeeEC
Confidence 56789999999999999999 67999999999999999 79999999875 7899999999999999999999
Q ss_pred C
Q 032250 144 K 144 (144)
Q Consensus 144 G 144 (144)
|
T Consensus 79 G 79 (105)
T COG0278 79 G 79 (105)
T ss_pred C
Confidence 7
No 28
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.35 E-value=6.1e-12 Score=81.07 Aligned_cols=58 Identities=33% Similarity=0.567 Sum_probs=50.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|++|+.+|||+|++++.+|++.+++|..++++.. .+..+.+.+..+..++|+|+++|
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~----~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED----PEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC----HHHHHHHHHHcCCcccCEEEECC
Confidence 48999999999999999999999999999999874 34556677777889999999986
No 29
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.27 E-value=1.1e-11 Score=80.62 Aligned_cols=54 Identities=22% Similarity=0.447 Sum_probs=44.0
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~-----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|++|+++|||+|++++.+|+++ ++++..+|+++. ++ +.+..|..++|+++|||
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~----~~----l~~~~~i~~vPti~i~~ 60 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF----PD----LADEYGVMSVPAIVING 60 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC----Hh----HHHHcCCcccCEEEECC
Confidence 58999999999999999999976 567777777753 22 34557899999999987
No 30
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.6e-10 Score=91.10 Aligned_cols=70 Identities=19% Similarity=0.405 Sum_probs=65.4
Q ss_pred HHHHHHhhhcCCCEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 71 LEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 71 ~~~~v~~~i~~~~VvvYsk-----s~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+...++++++.++|++|-| +.|++.+++..+|+++|++|..+||-.+ +++|+.++++..|+|+||+||+|
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D----eelRqglK~fSdWPTfPQlyI~G 202 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD----EELRQGLKEFSDWPTFPQLYVKG 202 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC----HHHHHHhhhhcCCCCccceeECC
Confidence 5559999999999999999 5699999999999999999999999885 68999999999999999999998
No 31
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.89 E-value=8.3e-09 Score=69.30 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=46.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+++|+.++||+|.+++.+|+++|++|+.++++.. +...+.+.+.++..+||++..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~----~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKG----SPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCC----hHHHHHHHHhCCCCcccEEEe
Confidence 6799999999999999999999999999999753 333455667788899999976
No 32
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.89 E-value=6e-09 Score=72.92 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=52.9
Q ss_pred HHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 70 ~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~-----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
..++.++++-+.-.|.+|..+|||||..++.++++. ++++..+|+++. . .+++.+|...+|+++|||
T Consensus 2 ~~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~----~----e~a~~~~V~~vPt~vidG 73 (89)
T cd03026 2 DLLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF----Q----DEVEERGIMSVPAIFLNG 73 (89)
T ss_pred hHHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC----H----HHHHHcCCccCCEEEECC
Confidence 346777766666689999999999999999988865 577888888764 1 224556999999999987
No 33
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.87 E-value=1e-08 Score=68.19 Aligned_cols=54 Identities=17% Similarity=0.410 Sum_probs=45.0
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
++.+|+.+.||+|++++.+|+++|++|++++++.. . ++.+ +..+..+||+++++
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~-----~-~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV-----S-RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch-----h-HHHH-HHhCCCccCEEEEC
Confidence 58899999999999999999999999999998753 1 2223 34688999999986
No 34
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.87 E-value=1.1e-08 Score=64.04 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=46.8
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.+|+.++||+|.+++.+|+.+|++|+.++++..+ +... .+.+..+..++|.++++|
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~-~~~~---~~~~~~~~~~~P~l~~~~ 57 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGE-GEQE---EFLALNPLGKVPVLEDGG 57 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCC-CCCH---HHHhcCCCCCCCEEEECC
Confidence 6899999999999999999999999999998752 2111 456677899999999875
No 35
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.85 E-value=6.3e-09 Score=73.95 Aligned_cols=48 Identities=25% Similarity=0.427 Sum_probs=40.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|+||++++||+|++|+++|+++|++|+++|+.+...+..++++.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 579999999999999999999999999999987655556666665443
No 36
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.84 E-value=6e-09 Score=75.40 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=40.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|+||++++||+|++|+++|+++|++|+++|+.++....+++++.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHc
Confidence 579999999999999999999999999999988654555666555443
No 37
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.82 E-value=1.1e-08 Score=67.98 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=39.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHh----cCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKR----LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e----~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|++|+.+|||+|++++..|++ .+..+....+|.+. + . + +.+..|..++|++++||
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~-~-~---~-~~~~~~v~~vPt~~~~g 61 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME-N-P---Q-KAMEYGIMAVPAIVING 61 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc-C-H---H-HHHHcCCccCCEEEECC
Confidence 5889999999999999999874 34334444444321 1 2 2 23446899999999986
No 38
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=98.81 E-value=2e-08 Score=71.25 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=45.2
Q ss_pred EEEEEeCC------ChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcC----CCeeeEEEECC
Q 032250 84 VVVYSKTW------CSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTG----QHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~------CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G----~~TVP~VFI~G 144 (144)
|+||..+- =..|.+++.+|+.+||+|+++||+.+ ++.++++.+..| .+++|||||||
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d----~~~r~em~~~~~~~~g~~tvPQIFi~~ 68 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN----EENRQWMRENVPNENGKPLPPQIFNGD 68 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC----HHHHHHHHHhcCCCCCCCCCCEEEECC
Confidence 56666643 34689999999999999999999974 456666666654 59999999986
No 39
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.76 E-value=2.3e-08 Score=65.81 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=45.9
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
++|+.++||+|.+++.+|+++|++|+.++++.. +. .+.+.+..+..+||.+..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~--~~---~~~~~~~np~~~vP~L~~~ 55 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK--NK---PAEMLAASPKGTVPVLVLG 55 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC--CC---CHHHHHHCCCCCCCEEEEC
Confidence 689999999999999999999999999999864 21 2345677888999999885
No 40
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.74 E-value=2.5e-08 Score=71.98 Aligned_cols=64 Identities=27% Similarity=0.377 Sum_probs=45.4
Q ss_pred HHH-HHHhhhcCCCEEEE-EeCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 71 LEE-SVKKTVSENPVVVY-SKTWCSYSSEVKLLFKRLG-----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 71 ~~~-~v~~~i~~~~VvvY-sks~CPyC~rAK~lL~e~g-----v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+.+ ..+++.+..++++| +++|||+|+.++.+|++.. +.+..+|+|+. + .+.+.+|..++|++++
T Consensus 11 ~~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~----~----~l~~~~~v~~vPt~~i 81 (113)
T cd02975 11 LKEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED----K----EKAEKYGVERVPTTIF 81 (113)
T ss_pred HHHHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC----H----HHHHHcCCCcCCEEEE
Confidence 344 44556566666666 7899999999999998664 34556666642 2 3456679999999998
No 41
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.74 E-value=2.4e-08 Score=64.80 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=46.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
+.+|+.++||+|.+++.+|+++|++|+.++++.. ++....+.+.+..+..++|++.++
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~--~~~~~~~~~~~~~p~~~vP~l~~~ 58 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLA--AGEQRSPEFLAKNPAGTVPVLELD 58 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecc--cCccCCHHHHhhCCCCCCCEEEeC
Confidence 3689999999999999999999999999998753 122223456677888999999874
No 42
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.74 E-value=2.5e-08 Score=74.36 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=40.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|+||+.++||+|++|+++|+++|++|+++|+.++.++.+++++.++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 789999999999999999999999999999987654555666666554
No 43
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.71 E-value=5e-08 Score=63.97 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=42.9
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
.+|+.++||||.+++.+|..+|++|+.++++.. ... ..+ +..+..+||+++++
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~---~~~--~~~-~~~~~~~vP~L~~~ 54 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQND---DEA--TPI-RMIGAKQVPILEKD 54 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC---chH--HHH-HhcCCCccCEEEeC
Confidence 589999999999999999999999999998853 111 222 44678899999986
No 44
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.70 E-value=5.5e-08 Score=65.69 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=40.6
Q ss_pred EEEEEeCCChhHHHH----HHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEV----KLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rA----K~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
|.+|+ +|||+|+.+ +++++++|.+++++++|+. ++ . ...|..++|+++|||
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~----~~----a-~~~~v~~vPti~i~G 57 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDM----NE----I-LEAGVTATPGVAVDG 57 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH----HH----H-HHcCCCcCCEEEECC
Confidence 56776 999999999 6677788999999999852 22 1 235899999999987
No 45
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.69 E-value=4.6e-08 Score=64.12 Aligned_cols=59 Identities=29% Similarity=0.334 Sum_probs=48.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+.+|+.+.||+|++++.+|+++|++|+.++++.. ++...++.+.+..+..+||.+.+||
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~--~~~~~~~~~~~~~p~~~vP~l~~~~ 59 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLM--KGEHLKPEFLKLNPQHTVPTLVDNG 59 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCc--cCCcCCHHHHhhCcCCCCCEEEECC
Confidence 3689999999999999999999999999999853 2233345666777888999998765
No 46
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.66 E-value=5.8e-08 Score=70.47 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=41.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|+||+.++|++|++|+++|+++|++|+++|+.++..+..++++.++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 689999999999999999999999999999987655666777766654
No 47
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.66 E-value=4.3e-08 Score=71.27 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=40.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|.||+.++||+|++|+++|+++|++|+++|+.+......++.+.++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~ 48 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLL 48 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHc
Confidence 579999999999999999999999999999987644555666655554
No 48
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.65 E-value=7.5e-08 Score=72.12 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=43.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhc
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT 132 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~ 132 (144)
|+||+.++|++|++|+++|+++|++|+++|+.++..+.+++++++...+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKTE 50 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHhC
Confidence 7899999999999999999999999999999887677788888777653
No 49
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.64 E-value=7.6e-08 Score=69.36 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=43.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|+||+.++|+.|++|+++|+++|++|+++|+.+..++.+++++.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHh
Confidence 579999999999999999999999999999988777778888877654
No 50
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.63 E-value=7.5e-08 Score=62.82 Aligned_cols=56 Identities=25% Similarity=0.330 Sum_probs=45.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+++|+.++||+|.+++.+|+++|++|+.++++... . .+++.+..+..+||.+..||
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~----~~~~~~~~p~~~vP~l~~~~ 56 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDN-P----PEDLAELNPYGTVPTLVDRD 56 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCC-C----CHHHHhhCCCCCCCEEEECC
Confidence 46999999999999999999999999999988531 1 23345567788999887665
No 51
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.62 E-value=9.3e-08 Score=71.53 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=43.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|+||+.++|++|++|+++|+++|++|+++|+.++.++.+++++.+...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~~ 49 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRLT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHHc
Confidence 789999999999999999999999999999988767777887777653
No 52
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.61 E-value=1.5e-07 Score=65.02 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=48.7
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
...+.+|+.+.||+|.+++.+|+++|++|+.++++.. + .++.+.+.++..+||++.+|
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~--~---~~~~~~~~np~~~vPvL~~~ 73 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK--D---KPDWFLEKNPQGKVPALEID 73 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC--C---CcHHHHhhCCCCCcCEEEEC
Confidence 3468999999999999999999999999999998863 1 12445667788999999987
No 53
>PHA02125 thioredoxin-like protein
Probab=98.56 E-value=1.9e-07 Score=62.61 Aligned_cols=50 Identities=18% Similarity=0.441 Sum_probs=38.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
|++|+.+||++|++++.+|++. .++.+++|.+ +. + .+.+..+..++|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~--~~---~-~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTD--EG---V-ELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCC--CC---H-HHHHHcCCceeCeEE
Confidence 7899999999999999999864 5667777764 11 2 345556899999986
No 54
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.55 E-value=2.3e-07 Score=60.21 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=47.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+++|+.+.||+|.+++.+|+++|++|+.++++.. +++...+.+.+.....++|.+..+|
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~--~~~~~~~~~~~~~p~~~vP~l~~~~ 59 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDIL--KGETRTPEFLALNPNGEVPVLELDG 59 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCC--CcccCCHHHHHhCCCCCCCEEEECC
Confidence 3689999999999999999999999999999853 1223334556677888999998875
No 55
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.53 E-value=2.5e-07 Score=67.68 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=44.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
.|+||+.+.|+.|++|+++|+++|++|+++|+.+..++.+++++.+++.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~ 49 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDL 49 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHc
Confidence 4789999999999999999999999999999988777888888888754
No 56
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.53 E-value=3.6e-07 Score=62.47 Aligned_cols=53 Identities=25% Similarity=0.449 Sum_probs=40.3
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC----CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g----v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|++|++++|+.|..|+.+|++.. +.++.+||+++ ++ +.+.+|. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d----~~----l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED----PE----LFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT----HH----HHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC----HH----HHHHhcC-CCCEEEEcC
Confidence 589999999999999999999654 45677777753 33 4455674 899999986
No 57
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.41 E-value=7.8e-07 Score=59.23 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=46.4
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 86 vYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|+.++||||.+++-+|+.+|++|+.++++.. +. .+.+.+..+..+||++..||
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~--~~---~~~~~~~~p~~~vPvL~~~g 54 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE--EK---RPEFLKLNPKGKVPVLVDDG 54 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT--ST---SHHHHHHSTTSBSSEEEETT
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc--cc---hhHHHhhcccccceEEEECC
Confidence 68999999999999999999999999999874 22 45567778999999998765
No 58
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.38 E-value=3.1e-06 Score=62.18 Aligned_cols=70 Identities=11% Similarity=0.177 Sum_probs=44.6
Q ss_pred HHHHhhhcCC-C-EEEEEeCCChhHHHHHHHHH----hcCCCcEEEEecCCC----CCcHHHHHHHHHh---cCCCeeeE
Q 032250 73 ESVKKTVSEN-P-VVVYSKTWCSYSSEVKLLFK----RLGVEPLVIELDEMG----PQGPQLQKLLERL---TGQHTVPN 139 (144)
Q Consensus 73 ~~v~~~i~~~-~-VvvYsks~CPyC~rAK~lL~----e~gv~y~~vdld~~~----~d~~eiqe~L~~~---~G~~TVP~ 139 (144)
+.+++.+..+ . |+.|+++|||+|+++...|+ +.++++..+|+|.++ .+..++++...++ ++...+|+
T Consensus 14 ~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT 93 (122)
T TIGR01295 14 VRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPT 93 (122)
T ss_pred HHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCE
Confidence 3455555443 3 88899999999999876665 446778888988531 1112444443433 24456999
Q ss_pred EEE
Q 032250 140 VFI 142 (144)
Q Consensus 140 VFI 142 (144)
+++
T Consensus 94 ~v~ 96 (122)
T TIGR01295 94 FVH 96 (122)
T ss_pred EEE
Confidence 875
No 59
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.35 E-value=1.9e-06 Score=60.10 Aligned_cols=65 Identities=15% Similarity=0.324 Sum_probs=40.7
Q ss_pred HHHhhhcCCC--EEEEEeCCChhHHHHHHHH-------Hhc--CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 74 SVKKTVSENP--VVVYSKTWCSYSSEVKLLF-------KRL--GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 74 ~v~~~i~~~~--VvvYsks~CPyC~rAK~lL-------~e~--gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.+++.+.+++ ++.|+.+||++|++.+..+ +.. ++.+..+|++++ .... ..+.+..|..++|++++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~-~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKN---DPEI-TALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCC---CHHH-HHHHHHcCCCCCCEEEE
Confidence 3445555555 6689999999999987544 122 334444455442 2223 34555568999998876
No 60
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.33 E-value=1.7e-06 Score=68.52 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=43.7
Q ss_pred HHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLG-----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 72 ~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~g-----v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.+.++++-..-.|++|+.+|||+|+.++.++++.. +.+..+|.++. + .+.+.+|..++|+++|++
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~----~----~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN----P----DLAEKYGVMSVPKIVINK 194 (215)
T ss_pred HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC----H----HHHHHhCCccCCEEEEec
Confidence 44444433334577799999999999999988653 33444555442 2 234456999999999874
No 61
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.29 E-value=2e-06 Score=57.49 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=48.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+++|..+.||+|.+++-+|+++|++|+.++++.. .++...+.+.++.+..+||.+..||
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~--~~~~~~~~~~~inP~g~vP~L~~~g 59 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLP--LSEHNEPWFMRLNPTGEVPVLIHGD 59 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCC--cCccCCHHHHHhCcCCCCCEEEECC
Confidence 4689999999999999999999999999998764 2223345577888899999997765
No 62
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.27 E-value=2.7e-06 Score=50.43 Aligned_cols=56 Identities=23% Similarity=0.506 Sum_probs=41.5
Q ss_pred EEEEEeCCChhHHHHHHHHH-----hcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFK-----RLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~-----e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+++|..+||++|.+++..++ +.++.+..++++.. ....+. ....+...+|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED----PALEKE-LKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC----hHHhhH-HHhCCCccccEEEEEe
Confidence 47899999999999999999 45677888888774 222222 2345778999998853
No 63
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.25 E-value=3.8e-06 Score=55.27 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=48.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+.+|+.+.||+|.+++-+|++.|++|+.++++.. +++...+.+.+.....++|.+..+|
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~~P~~~vP~l~~~g 60 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLT--KGEHKSPEHLARNPFGQIPALEDGD 60 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCcc--ccccCCHHHHhhCCCCCCCEEEECC
Confidence 5799999999999999999999999999988864 2223345566778889999987664
No 64
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.23 E-value=1.1e-06 Score=77.77 Aligned_cols=75 Identities=15% Similarity=0.249 Sum_probs=51.8
Q ss_pred cchHHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 67 YGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 67 ~~~~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
..++..+.++++-....|.+|..+.||||..|++.+.+..+....++.+.. |..+.++.. +.++..+||++||||
T Consensus 104 l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~i--d~~~~~~~~-~~~~v~~VP~~~i~~ 178 (515)
T TIGR03140 104 LDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMI--DGALFQDEV-EALGIQGVPAVFLNG 178 (515)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEE--EchhCHHHH-HhcCCcccCEEEECC
Confidence 445566777766667789999999999999999999877553222222221 223444444 455888999999986
No 65
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.22 E-value=3.5e-06 Score=71.29 Aligned_cols=65 Identities=18% Similarity=0.425 Sum_probs=51.4
Q ss_pred HHHHhhhcCC--CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 73 ESVKKTVSEN--PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 73 ~~v~~~i~~~--~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+..-...+.. ++++|....||||.++|.+|+=+|++|+++||+.. .+..+ +...++.||.+.|.|
T Consensus 78 e~~~~~ld~s~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV------~r~eI-k~SsykKVPil~~~G 144 (370)
T KOG3029|consen 78 ETKATRLDGSPLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV------LRQEI-KWSSYKKVPILLIRG 144 (370)
T ss_pred HHHHhhcCCCCceEEEEeeccCchHHHHHHHHhhcCCceEEEEecch------hhhhc-cccccccccEEEecc
Confidence 3333334444 79999999999999999999999999999999985 22222 455789999999965
No 66
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=98.21 E-value=4.3e-06 Score=62.37 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=44.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
.+++|+.+.|.-|++|+++|+++|++|+++|+.+..++.+++++++++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNK 50 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHc
Confidence 4789999999999999999999999999999988777888888888764
No 67
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.20 E-value=1.4e-06 Score=77.18 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=50.9
Q ss_pred cchHHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCC-----CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 67 YGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV-----EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 67 ~~~~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv-----~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
..++..+.++++-+.-.|.+|..++||||.+|.+.+++..+ ..+.+|..+ .++. .+.++..+||++|
T Consensus 103 l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~-------~~~~-~~~~~v~~VP~~~ 174 (517)
T PRK15317 103 LDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL-------FQDE-VEARNIMAVPTVF 174 (517)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh-------CHhH-HHhcCCcccCEEE
Confidence 44556677776666778999999999999999999887644 334443333 3333 3456889999999
Q ss_pred ECC
Q 032250 142 IGK 144 (144)
Q Consensus 142 I~G 144 (144)
|||
T Consensus 175 i~~ 177 (517)
T PRK15317 175 LNG 177 (517)
T ss_pred ECC
Confidence 986
No 68
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.20 E-value=7.4e-06 Score=53.39 Aligned_cols=53 Identities=21% Similarity=0.463 Sum_probs=40.1
Q ss_pred CCEEEEEeCCChhHHHHHHHHHh-----cCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKR-----LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e-----~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.-+++|+.+||++|++++..|++ .++.+..+|++.. .+ +.+..|...+|++++
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~----~~~~~~v~~~P~~~~ 69 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN----PE----LAEEYGVRSIPTFLF 69 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC----hh----HHHhcCcccccEEEE
Confidence 34888999999999999999987 5667777777763 12 233458889999887
No 69
>PRK10853 putative reductase; Provisional
Probab=98.18 E-value=4.4e-06 Score=61.48 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=43.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|+||+.+.|.-|++|+++|+++|++|+++|+-+..++.+++++.+.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDEL 49 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHc
Confidence 689999999999999999999999999999988767888888888764
No 70
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.17 E-value=6.3e-06 Score=60.83 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=44.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhc
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT 132 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~ 132 (144)
-|++|+.+.|.-|++|+.+|+++|++|+++|+.+.+++.+++++.+++.+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 38899999999999999999999999999999888778888888877653
No 71
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.17 E-value=5e-06 Score=60.51 Aligned_cols=48 Identities=27% Similarity=0.515 Sum_probs=43.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|++|+.+.|.-|++|+++|++.|++|+++|+.+..+..+++++.+...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKL 48 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHc
Confidence 579999999999999999999999999999988777888888877765
No 72
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.14 E-value=7e-06 Score=55.25 Aligned_cols=51 Identities=25% Similarity=0.602 Sum_probs=36.5
Q ss_pred EEEEEeCCChhHHHHHHHH----HhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLF----KRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL----~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
|.+| .++||+|.++.+.+ ++.|++++.+|+.+ .++. +.+|..++|.++|||
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~-------~~~~--~~ygv~~vPalvIng 57 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIED-------FEEI--EKYGVMSVPALVING 57 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETTT-------HHHH--HHTT-SSSSEEEETT
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEccC-------HHHH--HHcCCCCCCEEEECC
Confidence 5664 56699999777655 46688888888732 2333 446999999999997
No 73
>PHA02278 thioredoxin-like protein
Probab=98.11 E-value=1.9e-05 Score=56.55 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=39.5
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-|+.|+.+||+.|+.....|++. .+++..+|+|..+.| .+.+.+..+..++|++++
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d----~~~l~~~~~I~~iPT~i~ 78 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD----REKAVKLFDIMSTPVLIG 78 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc----cHHHHHHCCCccccEEEE
Confidence 36678889999999998887654 234667777764111 233566678999999875
No 74
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.11 E-value=1.1e-05 Score=55.66 Aligned_cols=60 Identities=10% Similarity=0.303 Sum_probs=41.2
Q ss_pred HHhhhcCCCEEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 75 v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~-------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+++++....++.|..+||++|++....|++. ++.+-.+|+++. . .+.+..+..++|++++
T Consensus 11 f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~----~----~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 11 WTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE----P----GLSGRFFVTALPTIYH 77 (101)
T ss_pred HHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC----H----hHHHHcCCcccCEEEE
Confidence 3445566679999999999999998887644 233444555442 2 2344558899999986
No 75
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.11 E-value=7.7e-06 Score=59.27 Aligned_cols=48 Identities=29% Similarity=0.592 Sum_probs=42.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|++|+.+.|.-|++|+++|+++|++|+++|+-+...+..++.+.++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~ 48 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKL 48 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHc
Confidence 579999999999999999999999999999988766778888777665
No 76
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.10 E-value=9.6e-06 Score=59.70 Aligned_cols=52 Identities=13% Similarity=0.411 Sum_probs=37.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g------v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-|+-|+.+|||.|+.....|+++- +.+-.+|+|+. + .+.+..|..++|++++
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~----~----~la~~~~V~~iPTf~~ 74 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV----P----DFNKMYELYDPPTVMF 74 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC----H----HHHHHcCCCCCCEEEE
Confidence 366699999999999998887553 23455566653 2 3456669999999875
No 77
>PRK10026 arsenate reductase; Provisional
Probab=98.09 E-value=1e-05 Score=61.67 Aligned_cols=50 Identities=24% Similarity=0.453 Sum_probs=44.9
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
..|+||+.+.|.-|++|+++|+++|++|+++|+-+..+..++++++++..
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADM 51 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhC
Confidence 45889999999999999999999999999999988767788888888765
No 78
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.08 E-value=1.7e-05 Score=54.82 Aligned_cols=51 Identities=22% Similarity=0.432 Sum_probs=35.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+++|+.+||+.|+.++..+++. ++.+..+|+|+. .+ +.+..+..++|++++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~----~~----l~~~~~v~~vPt~~i 73 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED----QE----IAEAAGIMGTPTVQF 73 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC----HH----HHHHCCCeeccEEEE
Confidence 6688889999999999888762 244555555542 22 344458899999886
No 79
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.07 E-value=2.5e-05 Score=55.00 Aligned_cols=55 Identities=20% Similarity=0.156 Sum_probs=37.3
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~-----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-|+.|+.+||+.|+.....|+++ ++.+-.+|+|+. .+. ..+.+..+...+|++++
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~----~~~-~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN----DST-MELCRREKIIEVPHFLF 77 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC----hHH-HHHHHHcCCCcCCEEEE
Confidence 47788889999999988888753 344445555542 222 24455568999998765
No 80
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.07 E-value=1.3e-05 Score=52.71 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=43.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcC-CCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTG-QHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G-~~TVP~VFI~G 144 (144)
+.+|+.+.||+|.+++-+|+++|++|+.++++.. ...+.+.+... ..++|.+..||
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-----~~~~~~~~~~p~~~~vP~l~~~~ 57 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-----NKSELLLASNPVHKKIPVLLHNG 57 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-----cCCHHHHHhCCCCCCCCEEEECC
Confidence 3689999999999999999999999999988753 11233445555 47999998765
No 81
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.05 E-value=1.2e-05 Score=52.16 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=45.8
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
++|+...|++|.+++.+|+++|++|+.++++.. ++....+.+.+.....++|++..||
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~--~~~~~~~~~~~~~p~~~vP~l~~~~ 59 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLL--KGEQLSPAYRALNPQGLVPTLVIDG 59 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCc--cCCcCChHHHHhCCCCCCCEEEECC
Confidence 588889999999999999999999999988753 1222234455677889999998765
No 82
>PTZ00051 thioredoxin; Provisional
Probab=98.05 E-value=3.6e-05 Score=52.58 Aligned_cols=62 Identities=15% Similarity=0.404 Sum_probs=40.7
Q ss_pred HHHHhhhcCCC--EEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 73 ESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 73 ~~v~~~i~~~~--VvvYsks~CPyC~rAK~lL~e~-----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+.+++++..++ ++.|+.+||++|++....|++. ++.+..+|+++. ++ +.+..+...+|++++
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-------~~-~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-------SE-VAEKENITSMPTFKV 77 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-------HH-HHHHCCCceeeEEEE
Confidence 34455555554 6688999999999998888763 344444444431 22 344458899999876
No 83
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.00 E-value=1.9e-05 Score=70.75 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=52.6
Q ss_pred cchHHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHH----hc-CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 67 YGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFK----RL-GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 67 ~~~~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~----e~-gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
..++..+.++++-..-.|.+|..++||||.++.+.++ +. ++..+.+|..+. ++ +.+.++..+||.++
T Consensus 463 l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~-------~~-~~~~~~v~~vP~~~ 534 (555)
T TIGR03143 463 LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF-------PD-LKDEYGIMSVPAIV 534 (555)
T ss_pred CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc-------HH-HHHhCCceecCEEE
Confidence 4455666666655566799999999999999877665 44 688888888863 22 34456999999999
Q ss_pred ECC
Q 032250 142 IGK 144 (144)
Q Consensus 142 I~G 144 (144)
|||
T Consensus 535 i~~ 537 (555)
T TIGR03143 535 VDD 537 (555)
T ss_pred ECC
Confidence 996
No 84
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.00 E-value=1.2e-05 Score=56.98 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=41.0
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 90 s~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
..||||++++-+|+++|++|+.+++|.. +. .+++.++.....||++..+|
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~--~~---p~~~~~~nP~g~vPvL~~~~ 69 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK--RK---PEDLKDLAPGTQPPFLLYNG 69 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC--CC---CHHHHHhCCCCCCCEEEECC
Confidence 5699999999999999999999999875 22 24567777888999877654
No 85
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.96 E-value=3e-05 Score=55.79 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=39.7
Q ss_pred HHHHhhhcCC---CEEEEEeCCChhHHHHHHHHH-------hc--CCCcEEEEecCCCCCcH------HHHHHHHHhcCC
Q 032250 73 ESVKKTVSEN---PVVVYSKTWCSYSSEVKLLFK-------RL--GVEPLVIELDEMGPQGP------QLQKLLERLTGQ 134 (144)
Q Consensus 73 ~~v~~~i~~~---~VvvYsks~CPyC~rAK~lL~-------e~--gv~y~~vdld~~~~d~~------eiqe~L~~~~G~ 134 (144)
+.++++..++ -++.|+.+||++|++.+..+. .+ ++.+..+|++... ... .-...+....+.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~-~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDK-EVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCc-eeeccCCCCccHHHHHHHcCC
Confidence 3445555555 377889999999999875442 12 2333444444320 000 012345566688
Q ss_pred CeeeEEEE
Q 032250 135 HTVPNVFI 142 (144)
Q Consensus 135 ~TVP~VFI 142 (144)
.++|++++
T Consensus 83 ~~~Pt~~~ 90 (125)
T cd02951 83 RFTPTVIF 90 (125)
T ss_pred ccccEEEE
Confidence 99999665
No 86
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.94 E-value=1.8e-05 Score=53.44 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=40.1
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 90 s~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
++||+|.+++-+|.++|++|+.++++.. +.....+.+ +..+...+|.+..|
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~--~~~~~~~~~-~~~p~~~vP~L~~~ 64 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFP--DIPPILGEL-TSGGFYTVPVIVDG 64 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCC--Ccccccccc-cCCCCceeCeEEEC
Confidence 6899999999999999999999988753 223333344 56678899999776
No 87
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.94 E-value=3.9e-05 Score=53.84 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=39.2
Q ss_pred HHhhhcCCC--EEEEEeCCChhHHHHHHHHHhc------------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 75 VKKTVSENP--VVVYSKTWCSYSSEVKLLFKRL------------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 75 v~~~i~~~~--VvvYsks~CPyC~rAK~lL~e~------------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
+++.+.+++ ++.|..+||++|++....+++. .+.+-.+|+|+. + .+.+..|..++|++
T Consensus 11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-------~-~l~~~~~v~~~Ptl 82 (108)
T cd02996 11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-------S-DIADRYRINKYPTL 82 (108)
T ss_pred HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-------H-HHHHhCCCCcCCEE
Confidence 334444444 6788999999999998888632 133444555542 2 24555689999998
Q ss_pred EE
Q 032250 141 FI 142 (144)
Q Consensus 141 FI 142 (144)
++
T Consensus 83 ~~ 84 (108)
T cd02996 83 KL 84 (108)
T ss_pred EE
Confidence 75
No 88
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.93 E-value=3.1e-05 Score=51.18 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=46.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+.+|+.+.+++|++++-+|+++|++|+.+.++.. +++...+.+.+.....++|.+..+|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~--~~~~~~~~~~~~~p~~~vP~L~~~~ 59 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLR--KGEQLTPEFKKINPFGKVPAIVDGD 59 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCC--CCCcCCHHHHHhCcCCCCCEEEECC
Confidence 3689999999999999999999999999988864 2222334556677889999997765
No 89
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.92 E-value=3.6e-05 Score=56.01 Aligned_cols=47 Identities=23% Similarity=0.516 Sum_probs=33.6
Q ss_pred HHHHHHhhhcCCC--EEEEEeCCChhHHHHHHHHHh------cCCCcEEEEecCC
Q 032250 71 LEESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKR------LGVEPLVIELDEM 117 (144)
Q Consensus 71 ~~~~v~~~i~~~~--VvvYsks~CPyC~rAK~lL~e------~gv~y~~vdld~~ 117 (144)
.++.++....+++ ++.|+.+||++|++....+.+ .+..|..+++|..
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~ 62 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD 62 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC
Confidence 3455565655554 556889999999999877765 3446778888874
No 90
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.91 E-value=5.2e-05 Score=52.48 Aligned_cols=52 Identities=13% Similarity=0.314 Sum_probs=35.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g------v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+||++|++.+..+++.. +.+-.+|+|+. . .+.+..+...+|++++
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~----~----~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD----R----MLCRSQGVNSYPSLYV 78 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc----H----HHHHHcCCCccCEEEE
Confidence 367899999999999988876542 23344555542 1 2345558899999865
No 91
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.91 E-value=5.7e-05 Score=54.46 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=36.0
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~-----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-|+.|+.+||+.|+.++..|+++ ++.+..+|+++. + .+.+..+..++|++.+
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-------~-~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-------P-FLVEKLNIKVLPTVIL 81 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-------H-HHHHHCCCccCCEEEE
Confidence 36677889999999999888764 344444454442 2 2445568899999865
No 92
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.88 E-value=3.5e-05 Score=50.46 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=42.5
Q ss_pred EEEEeCCChhHHHHHHHHHh--cCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 85 VVYSKTWCSYSSEVKLLFKR--LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e--~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.+|+.+.||+|.+++-+|++ +|++|+.++++... . .+.+.+..+..+||.+..
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~-~----~~~~~~~~p~~~vP~l~~ 56 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWS-D----DESLLAVNPLGKIPALVL 56 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCccc-C----ChHHHHhCCCCCCCEEEE
Confidence 68999999999999999999 89999999998531 1 123345678889999875
No 93
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.87 E-value=4.4e-05 Score=60.47 Aligned_cols=62 Identities=23% Similarity=0.401 Sum_probs=44.0
Q ss_pred HHhhhcCCCEEEEEe---CCChhHHHHHHHHHhcC-----CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 75 VKKTVSENPVVVYSK---TWCSYSSEVKLLFKRLG-----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 75 v~~~i~~~~VvvYsk---s~CPyC~rAK~lL~e~g-----v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.+.+.....|++|.. +|||+|+.++.+|++.. +++..+++|.+ + ...+.+..|..++|++.+
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~--~----~~~l~~~~~V~~~Pt~~~ 83 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP--E----DKEEAEKYGVERVPTTII 83 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc--c----cHHHHHHcCCCccCEEEE
Confidence 333444556889988 99999999999997663 34556777753 1 123456669999999987
No 94
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.86 E-value=8.7e-05 Score=52.26 Aligned_cols=54 Identities=19% Similarity=0.425 Sum_probs=35.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC---CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv---~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
++.|+.+||++|++....|++..- ....+.+|.++ +. ..+.+..+...+|++++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~-~~----~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESS-IK----PSLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCC-CC----HHHHHhcCCeecCEEEE
Confidence 778999999999999888875422 12334444320 11 23445568899998875
No 95
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.86 E-value=6.8e-05 Score=50.82 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=37.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-|+.|..+||++|+..+..|++. +-++....+|.. +. ..+.+..+...+|++++
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~----~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--EN----KELCKKYGVKSVPTIIF 77 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TS----HHHHHHTTCSSSSEEEE
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhh--cc----chhhhccCCCCCCEEEE
Confidence 47788899999999999888643 324555555543 11 23455568999999875
No 96
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.86 E-value=7.3e-05 Score=49.46 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=46.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
++++|..+.|+.|.+++-+|+++|++|+.+.++.. +.++.+.......++|.+..||
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~-----~~~~~~~~~~p~~~vP~l~~~~ 57 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE-----EWQESLKPKMLFGQLPCFKDGD 57 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH-----HhhhhhhccCCCCCCCEEEECC
Confidence 36789989999999999999999999999988742 2334556677788999998775
No 97
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.84 E-value=5e-05 Score=49.64 Aligned_cols=56 Identities=14% Similarity=0.024 Sum_probs=44.9
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
++|..+.|+.|.+++-+|+++|++|+.++++.. +. ..+.+.......++|.+..+|
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~--~~--~~~~~~~~~p~~~vP~L~~~~ 57 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYE--EW--PELDLKPTLPFGQLPVLEIDG 57 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHH--Hh--hhhhhccCCcCCCCCEEEECC
Confidence 688889999999999999999999999998763 11 112355677889999998765
No 98
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1.9e-05 Score=66.05 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=49.4
Q ss_pred cCCCEEEEEeC------CChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhc----CCCeeeEEEECC
Q 032250 80 SENPVVVYSKT------WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT----GQHTVPNVFIGK 144 (144)
Q Consensus 80 ~~~~VvvYsks------~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~----G~~TVP~VFI~G 144 (144)
.++.||||+.+ +--.|..++.+|+..+|.|++.||..+ .+.+++|+++. ...+.|+|||+|
T Consensus 129 ge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd----~~fr~EL~~~lg~~~~~~~LPrVFV~G 199 (281)
T KOG2824|consen 129 GEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMD----SEFREELQELLGEDEKAVSLPRVFVKG 199 (281)
T ss_pred CCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEeccccc----HHHHHHHHHHHhcccccCccCeEEEcc
Confidence 35689999985 578999999999999999999999986 34555555543 357899999987
No 99
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.84 E-value=5.8e-05 Score=49.46 Aligned_cols=42 Identities=10% Similarity=0.017 Sum_probs=36.0
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 91 WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 91 ~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+||+|.+++.+|+.+|++|+.++++.. + .....++|.+..+|
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~----~--------~~p~g~vP~l~~~g 56 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNP----W--------RSPTGKLPFLELNG 56 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCc----c--------cCCCcccCEEEECC
Confidence 899999999999999999999999863 1 44567899998875
No 100
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.83 E-value=4.9e-05 Score=51.81 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=36.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC----CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g----v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+||+.|++....|++.. -.+....+|-+. . ..+.+..+...+|++++
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~----~~l~~~~~i~~~Pt~~~ 72 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--Q----PQIAQQFGVQALPTVYL 72 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--C----HHHHHHcCCCCCCEEEE
Confidence 377888899999999988886532 234444554431 1 23455568899999886
No 101
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.83 E-value=5e-05 Score=51.65 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=37.0
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|+.+||+.|++++..|++. ...+..+.+|.. . .. .+.+..+...+|++++
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~--~---~~-~~~~~~~i~~~Pt~~~ 74 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE--E---LP-EISEKFEITAVPTFVF 74 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc--c---CH-HHHHhcCCccccEEEE
Confidence 36789999999999998888753 334556666653 1 12 2344458899998765
No 102
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.82 E-value=0.00012 Score=50.63 Aligned_cols=52 Identities=12% Similarity=0.248 Sum_probs=35.5
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g------v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+||+.|++....+++.. +.+-.+|+++. ..+.+..|...+|++++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY--------ESLCQQANIRAYPTIRL 79 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch--------HHHHHHcCCCcccEEEE
Confidence 377799999999999887776432 33444555542 23445568999999875
No 103
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=9.1e-05 Score=57.13 Aligned_cols=63 Identities=22% Similarity=0.443 Sum_probs=45.4
Q ss_pred HHHHHhhhcCC-C-EEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 72 EESVKKTVSEN-P-VVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 72 ~~~v~~~i~~~-~-VvvYsks~CPyC~rAK~lL~e~g------v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.++.+..++.. + +|.|..+||..|+.....|+++- +++..+|+|++ .+ |++.++...||+|++
T Consensus 51 ~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~----~e----la~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 51 SEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH----PE----LAEDYEISAVPTVLV 121 (150)
T ss_pred HHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc----cc----hHhhcceeeeeEEEE
Confidence 45666666544 3 67899999999999999888653 34556666664 22 355678999999876
No 104
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.80 E-value=7.8e-05 Score=49.81 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=44.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
+.+|+.+. |+|.+++-+|+++|++|+.+.++.. ++....+.+.+.....+||.+..+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~--~~~~~~~~~~~~~p~~~vP~l~~~ 58 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDIS--KGEQKKPEFLKINPNGRIPAIVDH 58 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCc--CCcccCHHHHHhCcCCCCCEEEeC
Confidence 57899886 9999999999999999999988853 122233455567788899999775
No 105
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=7.9e-05 Score=51.82 Aligned_cols=59 Identities=17% Similarity=0.344 Sum_probs=47.1
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHH-----------HhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLE-----------RLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~-----------~~~G~~TVP~VFI~G 144 (144)
+-++|+...||.|..+++.|+.++++|++|||... .+.+++.|. +..|+-.+|.+.+++
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~S---m~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d 72 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITES---MANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDD 72 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhh---hhhHHHHHhhhccchhHHhhhhcCcccceEEEeCC
Confidence 34899999999999999999999999999999874 455555442 235788899888763
No 106
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.77 E-value=0.00019 Score=47.67 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=41.4
Q ss_pred HHHhhhcCC--CEEEEEeCCChhHHHHHHHHHh----c--CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 74 SVKKTVSEN--PVVVYSKTWCSYSSEVKLLFKR----L--GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 74 ~v~~~i~~~--~VvvYsks~CPyC~rAK~lL~e----~--gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.+.+.+.+. -+++|+.+||++|+++...+++ . +-.+....+|-+ + ...+.+..|...+|++++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~----~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--A----NNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--c----hHHHHHhCCCCCCCEEEE
Confidence 344444444 5888999999999999887764 3 234555555543 1 223455568899999875
No 107
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.76 E-value=8.8e-05 Score=51.46 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=35.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~----g--v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+||++|++....|++. + +.+..+|++.. +.+ .+.+..+..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~-----~~~-~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED-----KNK-PLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc-----ccH-HHHHHcCCCcCCEEEE
Confidence 47889999999999987777654 2 23344455542 112 2344458899999886
No 108
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.76 E-value=6.8e-05 Score=58.61 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=47.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.+.+|+.+.||+|.+++-+|+++|++|+.+.+|.. + ..+++.++....+||.+..||
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~--~---~~~~~~~~nP~g~VPvL~~~g 66 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD--N---LPQDLIDLNPYQSVPTLVDRE 66 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc--c---CCHHHHHhCCCCCCCEEEECC
Confidence 48899999999999999999999999999999853 1 223455677788999998775
No 109
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.76 E-value=0.00014 Score=51.43 Aligned_cols=55 Identities=16% Similarity=0.422 Sum_probs=35.8
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~-------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.-++.|..+|||+|++.+..|++. ++.+-.+|+|.. + .....+..+...+|++++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~----~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--Q----REFAKEELQLKSFPTILF 84 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--c----hhhHHhhcCCCcCCEEEE
Confidence 347789999999999998888654 233444455542 1 122234468889998864
No 110
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.73 E-value=0.00012 Score=54.84 Aligned_cols=53 Identities=17% Similarity=0.348 Sum_probs=35.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~----g--v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
|+.|+.+||++|++....|.+. + +.+..+++|.. +.++ +.+..+...+|++++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~-----~~~~-~~~~~~V~~iPt~v~ 82 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP-----KWLP-EIDRYRVDGIPHFVF 82 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc-----ccHH-HHHHcCCCCCCEEEE
Confidence 6678889999999988777643 2 34555566542 1222 344568899998875
No 111
>PRK10387 glutaredoxin 2; Provisional
Probab=97.71 E-value=9.7e-05 Score=56.93 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=41.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+.+|+.+.||+|.+++-+|+++|++|+.++++.. + ... . .+..+..+||++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~--~--~~~-~-~~~~p~~~VPvL~~ 53 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLAND--D--EAT-P-IRMIGQKQVPILQK 53 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCC--c--hhh-H-HHhcCCcccceEEe
Confidence 4689999999999999999999999999998753 1 111 1 24567789999954
No 112
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.71 E-value=0.00014 Score=49.01 Aligned_cols=53 Identities=19% Similarity=0.449 Sum_probs=35.7
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~----g--v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.-++.|..+||++|+.....|++. + +.+-.+|.++. . .+.+..|..++|++++
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~----~----~~~~~~~v~~~P~~~~ 74 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN----P----DIAAKYGIRSIPTLLL 74 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC----H----HHHHHcCCCcCCEEEE
Confidence 347788889999999998777643 2 34445555542 2 2334458899999876
No 113
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.70 E-value=8.1e-05 Score=53.35 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=34.8
Q ss_pred EEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhc
Q 032250 87 YSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT 132 (144)
Q Consensus 87 Ysks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~ 132 (144)
|+.+.|.-|++|+++|++.|++|+++|+.+...+.+++.+.+...+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 7889999999999999999999999999887667788888777764
No 114
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.68 E-value=6.5e-05 Score=52.45 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=37.9
Q ss_pred HHHHhhhcCC-CEEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 73 ESVKKTVSEN-PVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 73 ~~v~~~i~~~-~VvvYsks~CPyC~rAK~lL~e~-------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+.+++..... -++.|..+|||+|++....|++. +..+....+|-. . ...+.+..+..++|++++
T Consensus 7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~--~----~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT--A----YSSIASEFGVRGYPTIKL 78 (104)
T ss_pred hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc--c----CHhHHhhcCCccccEEEE
Confidence 3334444433 36678889999999887666542 323333334432 0 113345568899999865
No 115
>PRK09381 trxA thioredoxin; Provisional
Probab=97.68 E-value=0.00016 Score=50.50 Aligned_cols=52 Identities=13% Similarity=0.387 Sum_probs=35.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~----g--v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+|||+|+.+...|++. + +.+..+|++.. .. +.+..+..++|++++
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~----~~----~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN----PG----TAPKYGIRGIPTLLL 81 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC----hh----HHHhCCCCcCCEEEE
Confidence 47788899999999998777642 2 33445555542 22 234458899999876
No 116
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.66 E-value=0.00016 Score=47.38 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=45.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.+|+.+.+|+|.+++-+|+++|++|+.++++.. .++...+.+.+.....+||.+..||
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~--~~~~~~~~~~~~nP~~~vP~L~~~~ 59 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQ--FGGLDTPEFLAMNPNGRVPVLEDGD 59 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccc--cccccCHHHHhhCCCCCCCEEEECC
Confidence 589999999999999999999999999988753 1122234455677888999997765
No 117
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.66 E-value=0.00013 Score=52.04 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=34.8
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~-------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+||+.|+.....+++. ++.+-.+|++.. . .+.+..|..++|++++
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~----~----~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE----R----RLARKLGAHSVPAIVG 85 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc----H----HHHHHcCCccCCEEEE
Confidence 36778899999999887766532 344445555542 1 2345568999999875
No 118
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.66 E-value=4.9e-05 Score=50.17 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=37.8
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 91 WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 91 ~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.||||+|++-+|+++|++|+...++.. +++....+.+.++.+..+||.+..
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~-~~~~~~~~~~~~~~p~~~VP~L~~ 51 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLI-PKGEQKPPEFLALNPRGKVPVLVD 51 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETT-TTBCTTCHBHHHHSTT-SSSEEEE
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeee-cCccccChhhhccCcCeEEEEEEE
Confidence 499999999999999999998877432 123333355678889999999987
No 119
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.65 E-value=0.00013 Score=48.32 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=45.4
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
.+|+.+.||+|.+++-+|+++|++|+.++++..+ + ...+.+.++....++|++..+
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~--~-~~~~~~~~~nP~~~vP~L~~~ 57 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGK--E-NKTPEFLKKFPLGKVPAFEGA 57 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEeccccc--c-cCCHHHHHhCCCCCCCEEEcC
Confidence 4788899999999999999999999999998641 1 223456677788999999874
No 120
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.64 E-value=0.0001 Score=52.56 Aligned_cols=52 Identities=10% Similarity=0.211 Sum_probs=36.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC---cEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVE---PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~---y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
|+.|+.+||+.|+.....|+++.-+ ...+.+|.+ +. .+.+..+..++|++++
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~-----~~--~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAE-----KA--FLVNYLDIKVLPTLLV 82 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEch-----hh--HHHHhcCCCcCCEEEE
Confidence 5678889999999999888754222 344555543 11 5566678999998865
No 121
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.64 E-value=9.8e-05 Score=51.59 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=34.9
Q ss_pred CCEEEEEeCCChhHHHHHHHHHh---c----CCCcEEEEecCCCCCcH---------------HHHHHHHHhcCCCeeeE
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKR---L----GVEPLVIELDEMGPQGP---------------QLQKLLERLTGQHTVPN 139 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e---~----gv~y~~vdld~~~~d~~---------------eiqe~L~~~~G~~TVP~ 139 (144)
..|++|+.+|||||++..+.+.+ . .-.+..+.++-.+ +.. ...+.+.+..|...+|+
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt 85 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDD-SRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPT 85 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHS-HHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCC-cccccccccccccchhhhHHHHHHHHHcCCCccCE
Confidence 35889999999999999766653 1 1134555444321 110 12245666779999999
Q ss_pred EEEC
Q 032250 140 VFIG 143 (144)
Q Consensus 140 VFI~ 143 (144)
+++-
T Consensus 86 ~~~~ 89 (112)
T PF13098_consen 86 IVFL 89 (112)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9873
No 122
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.64 E-value=7.7e-05 Score=50.59 Aligned_cols=54 Identities=17% Similarity=0.364 Sum_probs=34.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC----C--CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG----V--EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g----v--~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-+++|+.+||+.|++....|++.. - .+....+|.+ + ...+.+..|...+|.+++
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----~-~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT-----A-EKDLASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc-----c-hHHHHHhCCCCcCCEEEE
Confidence 388999999999998877665421 1 2344444432 1 123345568899999865
No 123
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.62 E-value=0.0001 Score=51.60 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=36.7
Q ss_pred HhhhcCCC--EEEEEeCCChhHHHHHHHHHhc----CC-CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 76 KKTVSENP--VVVYSKTWCSYSSEVKLLFKRL----GV-EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 76 ~~~i~~~~--VvvYsks~CPyC~rAK~lL~e~----gv-~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
++++..++ ++.|+.+||++|+.....|++. +- ......+|.+ .. + +.+..+...+|++++
T Consensus 11 ~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d---~~---~-~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 11 EELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD---TI---D-TLKRYRGKCEPTFLF 77 (102)
T ss_pred HHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC---CH---H-HHHHcCCCcCcEEEE
Confidence 33444343 6789999999999988777643 21 1233344432 11 2 245558899998765
No 124
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.61 E-value=0.00016 Score=52.68 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=37.2
Q ss_pred hcCCC--EEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 79 VSENP--VVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 79 i~~~~--VvvYsks~CPyC~rAK~lL~e~g------v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+.+++ ++.|..+||++|+.++..+++.. +.+-.+|+|+. .+...+..+..++|++.+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~-------~~l~~~~~~I~~~PTl~l 90 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP-------QGKCRKQKHFFYFPVIHL 90 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC-------hHHHHHhcCCcccCEEEE
Confidence 44443 77899999999999988887653 23344555542 122223457788888754
No 125
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.61 E-value=0.00042 Score=51.39 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=40.5
Q ss_pred HHHhhhcCCC-E-EEEEeCCChhHHHHHH-HHH------hcCCCcEEEEecCCCCCcHHHHH----HHHHhcCCCeeeEE
Q 032250 74 SVKKTVSENP-V-VVYSKTWCSYSSEVKL-LFK------RLGVEPLVIELDEMGPQGPQLQK----LLERLTGQHTVPNV 140 (144)
Q Consensus 74 ~v~~~i~~~~-V-vvYsks~CPyC~rAK~-lL~------e~gv~y~~vdld~~~~d~~eiqe----~L~~~~G~~TVP~V 140 (144)
.++++..+++ | +.|+.+||++|++..+ .|. .+.-.|..+.+|.+ +.+++.+ ......|...+|++
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~--~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDRE--ERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCC--cCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 3455555554 4 4588899999998853 333 33445777766653 2233332 22334588899988
Q ss_pred EE
Q 032250 141 FI 142 (144)
Q Consensus 141 FI 142 (144)
++
T Consensus 85 vf 86 (124)
T cd02955 85 VF 86 (124)
T ss_pred EE
Confidence 76
No 126
>PRK15113 glutathione S-transferase; Provisional
Probab=97.60 E-value=0.0002 Score=56.00 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCEEEEEeC--CChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 82 NPVVVYSKT--WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 82 ~~VvvYsks--~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
..+++|+.+ .||+|.+++-+|+++|++|+.+.++-. +++...+++.+......||++..||
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~--~~~~~~~~~~~~nP~g~VP~L~~~~ 66 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLD--AGEHLQPTYQGYSLTRRVPTLQHDD 66 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCC--CccccCHHHHhcCCCCCCCEEEECC
Confidence 347899965 699999999999999999999998864 2333445566777889999998875
No 127
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.59 E-value=0.00034 Score=47.78 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=34.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC----CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g----v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+||++|++.+..|++.. -.+.+..+|.+ +.. .+.+..|...+|++++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~--~~~----~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD--VHQ----SLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc--chH----HHHHHCCCCccCEEEE
Confidence 377888999999999987776532 12444444432 112 2344458899998865
No 128
>PRK10996 thioredoxin 2; Provisional
Probab=97.58 E-value=0.00039 Score=51.75 Aligned_cols=63 Identities=13% Similarity=0.339 Sum_probs=40.1
Q ss_pred HHHhhhcCC--CEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 74 SVKKTVSEN--PVVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 74 ~v~~~i~~~--~VvvYsks~CPyC~rAK~lL~e~----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.+++.+.++ -++.|+.+||++|++....|++. +-.+..+.+|.+ +.. .+.+..+..++|++++
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~----~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE--AER----ELSARFRIRSIPTIMI 112 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC--CCH----HHHHhcCCCccCEEEE
Confidence 344444433 37788999999999987777643 334555555543 112 2345568899999876
No 129
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.58 E-value=0.00025 Score=47.02 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=39.7
Q ss_pred EEEEEeC-------CChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKT-------WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks-------~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+++|... +||+|.+++.+|+..|++|+.++++.. +..+..++|.+..||
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~------------~~~p~g~vPvl~~~g 57 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA------------KRSPKGKLPFIELNG 57 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc------------cCCCCCCCCEEEECC
Confidence 4678877 579999999999999999999887641 345678899988765
No 130
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.57 E-value=0.00019 Score=48.89 Aligned_cols=55 Identities=16% Similarity=0.362 Sum_probs=36.5
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~----g--v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|+.+||++|++.+..+++. + -.+...++|-..+ ...+.+..+..++|++++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-----NKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-----chhhHHhCCCCCcCEEEE
Confidence 37789999999999887777642 2 2355666665310 123344458899999875
No 131
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.57 E-value=0.00025 Score=48.37 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=34.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc----CC---CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL----GV---EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~----gv---~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|+.+||++|++....+++. +- .+....+|-+. .. .+.+..+...+|++++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--~~----~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--HR----ELCSEFQVRGYPTLLL 79 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--Ch----hhHhhcCCCcCCEEEE
Confidence 56788999999999887766533 11 34444444321 11 2344458899999775
No 132
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.55 E-value=0.00012 Score=50.00 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=33.8
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~----g--v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|+.+||++|++....+.+. . -.+....+|...++.. .+.+..|...+|++++
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHD----ALKEEYNVKGFPTFKY 81 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccH----HHHHhCCCccccEEEE
Confidence 47889999999999887655432 2 1233444443211122 2344458889998865
No 133
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.53 E-value=0.0002 Score=52.90 Aligned_cols=58 Identities=7% Similarity=0.171 Sum_probs=34.2
Q ss_pred EEEEEe-------CCChhHHHHHHHHH----hcC--CCcEEEEecCCCCCcHHHHHHHHHhcCCC-eeeEEEE
Q 032250 84 VVVYSK-------TWCSYSSEVKLLFK----RLG--VEPLVIELDEMGPQGPQLQKLLERLTGQH-TVPNVFI 142 (144)
Q Consensus 84 VvvYsk-------s~CPyC~rAK~lL~----e~g--v~y~~vdld~~~~d~~eiqe~L~~~~G~~-TVP~VFI 142 (144)
++.|.. +|||+|+.++..|+ +.. +.+-.+|+++...- ......+....+.. .+|++++
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w-~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYW-RDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccc-cCcchhhHhccCcccCCCEEEE
Confidence 666888 89999998876665 333 44555666542000 00112334444666 8999875
No 134
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.51 E-value=0.0002 Score=56.25 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=41.5
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE-ECC
Q 032250 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF-IGK 144 (144)
Q Consensus 86 vYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF-I~G 144 (144)
+|....||||.+++-+|+++|++|+.++++.. +. +.. .+..+..+||++. .||
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~--~~---~~~-~~~np~g~vP~l~~~~g 55 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIPVEKHVLLND--DE---ETP-IRMIGAKQVPILQKDDG 55 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCCeEEEECCCC--cc---hhH-HHhcCCCCcceEEeeCC
Confidence 78889999999999999999999999887653 11 122 3556778999987 454
No 135
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.51 E-value=0.00029 Score=46.47 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=43.3
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
.+|+.+.| .|.+++-+|+++|++|+.++++.. +++...+++.+..+..++|.+..+
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~np~~~vP~l~~~ 57 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLR--TKTQKGADYLAINPKGQVPALVLD 57 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecc--cCccCCHhHHHhCCCCCCCEEEEC
Confidence 57888876 488999999999999999988864 222234455677888999999876
No 136
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.50 E-value=5.6e-05 Score=56.37 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=39.1
Q ss_pred hHHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHH----Hhc-CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLF----KRL-GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 69 ~~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL----~e~-gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
++..+.++.....-.+++++-+|||+|.+..-+| +.. ++++.++-.|+. .++.+.+.. .|.+.+|++++
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~----~el~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN----KELMDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH----HHHTTTTTT--SS--SSEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC----hhHHHHHHh-CCCeecCEEEE
Confidence 3455677777777789999999999999775554 444 677777766653 233222222 57899999887
No 137
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.47 E-value=0.00029 Score=55.70 Aligned_cols=60 Identities=22% Similarity=0.438 Sum_probs=39.5
Q ss_pred CEEEEEeCCChhHHHH----HHHHHhcCCCcEEEEecCCCC-C----cHHHHHHHHHhcCC--CeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEV----KLLFKRLGVEPLVIELDEMGP-Q----GPQLQKLLERLTGQ--HTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rA----K~lL~e~gv~y~~vdld~~~~-d----~~eiqe~L~~~~G~--~TVP~VFI 142 (144)
++++|+.+|||+|++. +++.+++|+++..+.+|+..+ . .+.-...+.+..|. ..+|+.|+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 3999999999999987 566667788877788775410 0 00001233444453 68999886
No 138
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.41 E-value=0.00044 Score=57.38 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=44.8
Q ss_pred HHHHhhhcCCCEEEEEeCCChhHHHHHHHHH----hcCCCcEEEEecCCCCCc-H--HHHHHHHHhcCCCeeeEEEE
Q 032250 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFK----RLGVEPLVIELDEMGPQG-P--QLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 73 ~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~----e~gv~y~~vdld~~~~d~-~--eiqe~L~~~~G~~TVP~VFI 142 (144)
..++++.....++.|..+|||+|++....|+ +.|+.+..+++|...... + .....+.+..|...+|++|+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 3444455556688899999999998876665 457666777777531000 0 00012345568999999986
No 139
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.36 E-value=0.00056 Score=46.13 Aligned_cols=65 Identities=17% Similarity=0.363 Sum_probs=38.5
Q ss_pred HHHHHHhhhcCCC--EEEEEeCCChhHHHHHHHHHh-------cCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 71 LEESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 71 ~~~~v~~~i~~~~--VvvYsks~CPyC~rAK~lL~e-------~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
+.+.++++.++++ ++.|+.+||++|++.++.+-+ ..-+|..+.+|..+ ......+.. ..+|+++
T Consensus 6 ~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~---~~~~~~~~~----~~~P~~~ 78 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDD---EDPNAQFDR----QGYPTFF 78 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTT---HHHHHHHHH----CSSSEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCC---CChhHHhCC----ccCCEEE
Confidence 3445555555554 667889999999988766521 23457777777541 111112222 3399988
Q ss_pred E
Q 032250 142 I 142 (144)
Q Consensus 142 I 142 (144)
|
T Consensus 79 ~ 79 (82)
T PF13899_consen 79 F 79 (82)
T ss_dssp E
T ss_pred E
Confidence 6
No 140
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.32 E-value=0.00073 Score=51.76 Aligned_cols=51 Identities=18% Similarity=0.382 Sum_probs=33.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCe------eeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMGPQGPQLQKLLERLTGQHT------VPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~-------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~T------VP~VFI 142 (144)
++.|..+|||.|++....|++. ++.+-.+|+|+. .++ .+..+..+ +|++++
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~----~~l----a~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF----PNV----AEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC----HHH----HHHcCceecCCcCCCCEEEE
Confidence 8899999999999998877643 234445555553 222 33335555 898765
No 141
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.29 E-value=0.0006 Score=52.01 Aligned_cols=50 Identities=8% Similarity=0.234 Sum_probs=33.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCCCcHHHHHHHHHhcCCCee-eEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGPQGPQLQKLLERLTGQHTV-PNV 140 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g------v~y~~vdld~~~~d~~eiqe~L~~~~G~~TV-P~V 140 (144)
-|+-|+.+||+.|+..-.+|++.. +.+-.+|+|+. + .+.+..+.+.. |++
T Consensus 26 VVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~----~----dla~~y~I~~~~t~~ 82 (142)
T PLN00410 26 VVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV----P----DFNTMYELYDPCTVM 82 (142)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC----H----HHHHHcCccCCCcEE
Confidence 367899999999999988887653 23355666663 2 34555677745 455
No 142
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.28 E-value=0.00053 Score=55.14 Aligned_cols=73 Identities=14% Similarity=0.325 Sum_probs=51.1
Q ss_pred HHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHH----hcCCCcEEEEecCCCCC-c--HHHHHHHHHhcCCCeeeEEEE
Q 032250 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFK----RLGVEPLVIELDEMGPQ-G--PQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 70 ~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~----e~gv~y~~vdld~~~~d-~--~eiqe~L~~~~G~~TVP~VFI 142 (144)
.-.+.++++..+..+++|.++.||||+....+|+ +.|++...|.+|...-. - ......+.+..|..++|.+|+
T Consensus 110 ~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 110 KRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 3456777788888999999999999998766665 67898888888842100 0 000122334458899999986
No 143
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.28 E-value=0.001 Score=45.23 Aligned_cols=53 Identities=11% Similarity=0.356 Sum_probs=33.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCC------CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGV------EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv------~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+||++|++....+++..- .+....+|.. ..+ +....+..++|++++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~---~~~----~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT---AND----VPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc---chh----hhhhccCCCCCEEEE
Confidence 3677899999999998877765421 2444445542 111 223335689998875
No 144
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.27 E-value=0.00075 Score=49.52 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=39.5
Q ss_pred hcCCCEEEEEeCC--ChhHHHHHHHHHhcCCC------cEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 79 VSENPVVVYSKTW--CSYSSEVKLLFKRLGVE------PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 79 i~~~~VvvYsks~--CPyC~rAK~lL~e~gv~------y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.....|+.|+.+| ||.|+.++.+|++..-+ +-.+|+|+. + .++...+..++|++.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~----~----~la~~f~V~sIPTli~ 89 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE----Q----ALAARFGVLRTPALLF 89 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC----H----HHHHHcCCCcCCEEEE
Confidence 3455688899996 99999999988765332 334455542 2 4566679999999875
No 145
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.23 E-value=0.00096 Score=44.16 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=42.1
Q ss_pred eCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 89 KTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 89 ks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+..|++|.+++-+|+++|++|+.+.++.. +. +..+.+.+......+|.+..+|
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~--~~-~~~~~~~~~nP~g~vP~L~~~g 59 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLY--TP-DTRARILEFSPTGKVPVLVDGG 59 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCC--Cc-cccHHHHhhCCCCcCCEEEECC
Confidence 46799999999999999999999988764 11 2234566777889999998775
No 146
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.23 E-value=0.0011 Score=54.78 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=48.4
Q ss_pred chHHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 68 GSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 68 ~~~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
...++-.++..... ++. .-+||||.+++-+|+++|++|+.+.++.. + ..+++.++.....||.+..+|
T Consensus 53 ~~~~~~~~~~~~~~-~~~---~g~cp~s~rV~i~L~ekgi~ye~~~vdl~--~---~~~~fl~iNP~GkVPvL~~d~ 120 (265)
T PLN02817 53 SSPLEVCVKASLTV-PNK---LGDCPFCQRVLLTLEEKHLPYDMKLVDLT--N---KPEWFLKISPEGKVPVVKLDE 120 (265)
T ss_pred CccHHHHHhcccCC-CCc---CCCCcHHHHHHHHHHHcCCCCEEEEeCcC--c---CCHHHHhhCCCCCCCEEEECC
Confidence 34566666665532 222 33499999999999999999999888764 1 123345667788999998765
No 147
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.20 E-value=0.0016 Score=48.12 Aligned_cols=50 Identities=6% Similarity=0.197 Sum_probs=35.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~g------v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
|+-|+.+|||.|+..-.+|+++- +.+-.+|+|+. ++ +.+..+.+..|+..
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev-------~d-va~~y~I~amPtfv 73 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV-------PV-YTQYFDISYIPSTI 73 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc-------HH-HHHhcCceeCcEEE
Confidence 66799999999999988888663 34555666653 22 45666777788754
No 148
>PLN02473 glutathione S-transferase
Probab=97.19 E-value=0.00095 Score=51.74 Aligned_cols=59 Identities=25% Similarity=0.160 Sum_probs=45.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+.+|+.+.||+|.+++-+|+++|++|+.+.++-. +++...+...++....+||.+..||
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~--~~~~~~~~~~~~nP~g~vP~L~~~g 61 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLD--KLEQKKPEHLLRQPFGQVPAIEDGD 61 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCc--ccccCCHHHHhhCCCCCCCeEEECC
Confidence 5689999999999999999999999999988753 2222333344567778999997765
No 149
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.19 E-value=0.0011 Score=47.59 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=34.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCC-------cEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVE-------PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~-------y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+||+.|+.....+++..-. +....+|-. .+.. ..+.+..+.+.+|++++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~---~~~~-~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA---DEEN-VALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc---chhh-HHHHHhCCCCCCCEEEE
Confidence 46678899999999888777653221 333344421 0112 23445558889999876
No 150
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.16 E-value=0.0012 Score=43.03 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=42.4
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.+|+.+. +.|.+++-+|++.|++|+.+.++.. .+....+.+.+.....++|.+..||
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~~p~~~vP~l~~~g 58 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRG--PGEQAPPEYLAINPLGKVPVLVDGD 58 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCC--CCccCCHHHHhcCCCCCCCEEEECC
Confidence 4677665 7899999999999999999988753 1122234455677888999997765
No 151
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00065 Score=49.16 Aligned_cols=51 Identities=24% Similarity=0.510 Sum_probs=36.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCc-----EEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEP-----LVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y-----~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
|+-|+.+||+.|+.....+.++..+| -.+|+|+ +++. .+-.+...+|++.+
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-------~~~~-~~~~~V~~~PTf~f 80 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-------LEEV-AKEFNVKAMPTFVF 80 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-------CHhH-HHhcCceEeeEEEE
Confidence 45588999999999999998775544 3444443 3333 44458899999864
No 152
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=97.12 E-value=0.0015 Score=47.03 Aligned_cols=57 Identities=12% Similarity=0.283 Sum_probs=35.8
Q ss_pred EEEEEeCCCh------hHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcC--------CCee-eEEEECC
Q 032250 84 VVVYSKTWCS------YSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTG--------QHTV-PNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CP------yC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G--------~~TV-P~VFI~G 144 (144)
|.||..+--. .|.++..+|+.++|+|+.+||..+ ++.++.+.+..| ...+ |+||+||
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~----e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~ 74 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD----EEARQWMRENAGPEEKDPGNGKPLPPQIFNGD 74 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-----HHHHHHHHHHT--CCCS-TSTT--S-EEEETT
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC----HHHHHHHHHhccccccCCCCCCCCCCEEEeCC
Confidence 4556554332 466889999999999999999974 456666666542 3444 7999986
No 153
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.09 E-value=0.002 Score=49.33 Aligned_cols=63 Identities=17% Similarity=0.422 Sum_probs=40.0
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHH----hcCCCcEEEEecCCCCC-cH----HHHHHHHHhc---CCCeeeEEEE
Q 032250 80 SENPVVVYSKTWCSYSSEVKLLFK----RLGVEPLVIELDEMGPQ-GP----QLQKLLERLT---GQHTVPNVFI 142 (144)
Q Consensus 80 ~~~~VvvYsks~CPyC~rAK~lL~----e~gv~y~~vdld~~~~d-~~----eiqe~L~~~~---G~~TVP~VFI 142 (144)
.+..++.|+.+|||+|++....|+ +.|+.+..+++|+.... -+ ...+...... |...+|+.|+
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 455699999999999998876665 45666667777753100 00 0012223333 5678999886
No 154
>PLN02378 glutathione S-transferase DHAR1
Probab=97.08 E-value=0.0011 Score=52.15 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=40.4
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 90 s~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
..||||.+++-+|+++|++|+.+++|-. ++ .+.+.+.....+||.+..||
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~--~~---~~~~l~inP~G~VPvL~~~~ 67 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLS--DK---PQWFLDISPQGKVPVLKIDD 67 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcc--cC---CHHHHHhCCCCCCCEEEECC
Confidence 3499999999999999999999998864 22 23455677889999997765
No 155
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.08 E-value=0.0016 Score=53.19 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 90 s~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
..||+|++++-+|.++|++|+.+++|.. .. .+.+.++....+||++.-||
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~--~~---~~~fl~inP~g~vPvL~~~g 66 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLK--RK---PEDLQNLAPGTHPPFLTYNT 66 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCC--CC---CHHHHHHCcCCCCCEEEECC
Confidence 5699999999999999999999999874 21 24456777888999987654
No 156
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.02 E-value=0.0029 Score=45.53 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=35.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc---------CCCcEEEEecCCCCCcHHH-------------------HHHHHHhcCC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL---------GVEPLVIELDEMGPQGPQL-------------------QKLLERLTGQ 134 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~---------gv~y~~vdld~~~~d~~ei-------------------qe~L~~~~G~ 134 (144)
-++.|+.+|||.|++....|++. ++.+..+.+|.. .++. ...+.+..|.
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD---EESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred EEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC---HHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 46677789999999776655422 344445555543 1222 1345556788
Q ss_pred CeeeEEEE
Q 032250 135 HTVPNVFI 142 (144)
Q Consensus 135 ~TVP~VFI 142 (144)
..+|+++|
T Consensus 98 ~~~P~~~l 105 (131)
T cd03009 98 EGIPTLII 105 (131)
T ss_pred CCCCEEEE
Confidence 89999876
No 157
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.00 E-value=0.0019 Score=47.72 Aligned_cols=61 Identities=7% Similarity=0.151 Sum_probs=37.7
Q ss_pred HHHhhhcCC--CEEEEEeC-CChh--HH----------HHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeee
Q 032250 74 SVKKTVSEN--PVVVYSKT-WCSY--SS----------EVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP 138 (144)
Q Consensus 74 ~v~~~i~~~--~VvvYsks-~CPy--C~----------rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP 138 (144)
.+++.+.++ .+++|..+ ||+. |+ .|.+.|++.++.+-.+|+|+. ..|++..|.+++|
T Consensus 18 nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~--------~~La~~~~I~~iP 89 (120)
T cd03065 18 NYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD--------AKVAKKLGLDEED 89 (120)
T ss_pred hHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC--------HHHHHHcCCcccc
Confidence 344444444 45555554 5655 97 233444455777777888763 2346667999999
Q ss_pred EEEE
Q 032250 139 NVFI 142 (144)
Q Consensus 139 ~VFI 142 (144)
++++
T Consensus 90 Tl~l 93 (120)
T cd03065 90 SIYV 93 (120)
T ss_pred EEEE
Confidence 9865
No 158
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.94 E-value=0.0013 Score=51.14 Aligned_cols=52 Identities=8% Similarity=-0.004 Sum_probs=35.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC---CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv---~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
|+-|+.+||+.|+.+...|+++-- ....+.|+-+ +. .+....+...+|++++
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d-----~~--~l~~~f~v~~vPTlll 141 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS-----AT--GASDEFDTDALPALLV 141 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc-----ch--hhHHhCCCCCCCEEEE
Confidence 556888999999988887765432 2455555543 11 3455568899998876
No 159
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.92 E-value=0.0039 Score=45.23 Aligned_cols=57 Identities=18% Similarity=0.348 Sum_probs=35.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHh-------c--CCCcEEEEecCCCCCcH--------------------HHHHHHHHhcC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKR-------L--GVEPLVIELDEMGPQGP--------------------QLQKLLERLTG 133 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e-------~--gv~y~~vdld~~~~d~~--------------------eiqe~L~~~~G 133 (144)
-++.|+.+|||.|++....|++ . ++.+..+.+|+. .+ .....+++..|
T Consensus 20 vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 20 VGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS---EESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC---HHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 3567778999999987655542 1 333444555543 11 12345566668
Q ss_pred CCeeeEEEE
Q 032250 134 QHTVPNVFI 142 (144)
Q Consensus 134 ~~TVP~VFI 142 (144)
...+|+++|
T Consensus 97 v~~iPt~~l 105 (132)
T cd02964 97 VEGIPTLVV 105 (132)
T ss_pred CCCCCEEEE
Confidence 888999884
No 160
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0026 Score=52.20 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=49.1
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhc-CCCeeeEEEECC
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT-GQHTVPNVFIGK 144 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~-G~~TVP~VFI~G 144 (144)
..|.+|+.-.|||-+|++-.|+.+||+|+++++|-. + ..+.|.++. -+..||.+.-||
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~--~---Ks~~ll~~np~hkKVPvL~Hn~ 66 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT--N---KSEWLLEKNPVHKKVPVLEHNG 66 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC--C---CCHHHHHhccccccCCEEEECC
Confidence 569999999999999999999999999999999974 2 235566665 678899998876
No 161
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.87 E-value=0.0053 Score=55.82 Aligned_cols=70 Identities=13% Similarity=0.277 Sum_probs=42.2
Q ss_pred hHHHHHHHhhhcCCC--EEEEEeCCChhHHHHHHH-H------Hhc-CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeee
Q 032250 69 SRLEESVKKTVSENP--VVVYSKTWCSYSSEVKLL-F------KRL-GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP 138 (144)
Q Consensus 69 ~~~~~~v~~~i~~~~--VvvYsks~CPyC~rAK~l-L------~e~-gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP 138 (144)
+++++.+++...+++ ++.|+.+||++|++.+.. + ++. ++.+-.+|+++. .++.++ +.+..|...+|
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~---~~~~~~-l~~~~~v~g~P 536 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTAN---NAEDVA-LLKHYNVLGLP 536 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCC---ChhhHH-HHHHcCCCCCC
Confidence 455566665554433 456889999999987653 2 222 333444566543 233344 44455889999
Q ss_pred EEEE
Q 032250 139 NVFI 142 (144)
Q Consensus 139 ~VFI 142 (144)
++++
T Consensus 537 t~~~ 540 (571)
T PRK00293 537 TILF 540 (571)
T ss_pred EEEE
Confidence 9876
No 162
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=96.85 E-value=0.0032 Score=49.06 Aligned_cols=56 Identities=14% Similarity=0.308 Sum_probs=44.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+.+|..+ +++|.+++-+|+++|++|+.++++-. +++...+.+.++.....||++..
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~--~~~~~~~~~~~iNP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLG--KGGQFRPEFLRISPNNKIPAIVD 57 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCc--ccccCCHHHHhhCcCCCCCEEEe
Confidence 4688766 79999999999999999999988764 23333445667788889999976
No 163
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.85 E-value=0.0039 Score=50.63 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=35.8
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|+.+||++|++....+++. +-......+|-. + ...+.+..+..++|++++
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~-----~-~~~l~~~~~I~~~PTl~~ 112 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT-----R-ALNLAKRFAIKGYPTLLL 112 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc-----c-cHHHHHHcCCCcCCEEEE
Confidence 47889999999999998888654 212333444432 1 123455568899998875
No 164
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.81 E-value=0.0041 Score=55.58 Aligned_cols=53 Identities=17% Similarity=0.412 Sum_probs=36.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~-------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
++.|..+||++|+.....|++. ++.+-.+|+|.+ . .+...+..+..++|++++
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~---~---~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD---Q---KEFAKQELQLGSFPTILF 434 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC---c---cHHHHHHcCCCccceEEE
Confidence 6779999999999998887644 244555666653 1 122334457889998865
No 165
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.80 E-value=0.0045 Score=52.64 Aligned_cols=63 Identities=16% Similarity=0.320 Sum_probs=38.9
Q ss_pred HHHhhhcCCC--EEEEEeCCChhHHHHHHHHHh-------cCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 74 SVKKTVSENP--VVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 74 ~v~~~i~~~~--VvvYsks~CPyC~rAK~lL~e-------~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.+++.+.+++ ++.|..+||++|++....+++ .+-++....+|-+ +. ..+.+..|...+|++++
T Consensus 10 ~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--~~----~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT--EE----KDLAQKYGVSGYPTLKI 81 (462)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC--Cc----HHHHHhCCCccccEEEE
Confidence 4445555554 678999999999988765543 2322444444442 11 23455568899998865
No 166
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.79 E-value=0.0076 Score=45.95 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=17.0
Q ss_pred EEEEEeCCChhHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKR 104 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e 104 (144)
++-|+.+|||+|++....|.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 556788999999998877754
No 167
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.75 E-value=0.0053 Score=43.82 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=18.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~ 105 (144)
-|+.|..+|||.|++....|+++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHH
Confidence 47788899999999877777654
No 168
>PTZ00102 disulphide isomerase; Provisional
Probab=96.74 E-value=0.0047 Score=53.34 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=37.5
Q ss_pred HHHhhhcCC--CEEEEEeCCChhHHHHHHHHHh-------cCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 74 SVKKTVSEN--PVVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 74 ~v~~~i~~~--~VvvYsks~CPyC~rAK~lL~e-------~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.+++.+.++ -++.|..+||++|++....+.+ .+-++....+|-. ... .+.+..|...+|++++
T Consensus 41 ~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~--~~~----~l~~~~~i~~~Pt~~~ 112 (477)
T PTZ00102 41 TFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT--EEM----ELAQEFGVRGYPTIKF 112 (477)
T ss_pred hHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC--CCH----HHHHhcCCCcccEEEE
Confidence 334444444 4778999999999988755442 2323444444432 112 2445568889998865
No 169
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=96.74 E-value=0.002 Score=49.55 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=44.8
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 86 vYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+|+...||+|.+++-+|.++|++|+.+.++..+ .+....+.+.+.....++|.+..||
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~~~~nP~g~vP~L~~~g 59 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLR-DGEQRSPEFLALNPQGLVPTLDIDG 59 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEeccccc-ccccCChhhhhcCCCCcCCEEEECC
Confidence 688888999999999999999999998887421 1122234456677889999998876
No 170
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0028 Score=49.21 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=47.1
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
++|+.+.+|+|.+++-.|.++|++|+.+.++.. + ....+.+..+.....||.+..+|
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~--~-~~~~~~~~~~nP~gkVPvL~~~~ 58 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLD--A-EQKPPDFLALNPLGKVPALVDDD 58 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcc--c-ccCCHHHHhcCCCCCCCEEeeCC
Confidence 578888889999999999999999999999985 2 23445667777889999998664
No 171
>PLN02309 5'-adenylylsulfate reductase
Probab=96.71 E-value=0.006 Score=54.40 Aligned_cols=54 Identities=19% Similarity=0.428 Sum_probs=35.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~-------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+||++|+..+..|++. ++.+-.+|+|.. + ++...+..+...+|+|++
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~--~----~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD--Q----KEFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc--c----hHHHHhhCCCceeeEEEE
Confidence 47899999999999988887654 233444455521 1 122233458899999875
No 172
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0017 Score=52.09 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=39.5
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 86 vYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
+|..+.||||.||+.++--+|++++..-++-+++ +. =.++-|+..||.+.
T Consensus 3 LYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe---~T---p~rmiG~KqVPiL~ 52 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDE---ET---PIRMIGQKQVPILQ 52 (215)
T ss_pred eeEeccChHHHHHHHHhhccCCChhhheeccCcc---cC---hhhhhcccccceEE
Confidence 7888999999999999999999998887765421 11 13566999999875
No 173
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.61 E-value=0.0054 Score=42.68 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=30.3
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC----CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g----v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
-|+.|..+|||+|++....|++.. -...++-+.+. +.++.++.+++. +...+|.+
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~--~~~~~~~~~~~~-~~~~~p~~ 82 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDG--EKAEHQRFLKKH-GLEAFPYV 82 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCC--CHHHHHHHHHHh-CCCCCcEE
Confidence 467788899999998866665432 22444444321 334444444443 33335544
No 174
>PRK11752 putative S-transferase; Provisional
Probab=96.54 E-value=0.0063 Score=49.72 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=47.4
Q ss_pred hcCCCEEEEEeCCChhHHHHHHHHHhc------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 79 VSENPVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 79 i~~~~VvvYsks~CPyC~rAK~lL~e~------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
...+++.+|+. .+|+|.+++-+|+++ |++|+.+.++-. +++...+++.+.....+||++..+
T Consensus 40 ~~~~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~--~~~~~~~e~~~iNP~GkVP~Lv~~ 107 (264)
T PRK11752 40 VGKHPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIG--EGDQFSSGFVEINPNSKIPALLDR 107 (264)
T ss_pred CCCCCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCc--cccccCHHHHhhCCCCCCCEEEeC
Confidence 34558999996 599999999999997 888998888753 222334456677788899999764
No 175
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.53 E-value=0.0058 Score=50.75 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=50.6
Q ss_pred HHHHHHhhhcCCCEEEEEeCCChhHHHHHHHH----HhcCCCcEEEEecCCCCCc-HH--HHHHHHHhcCCCeeeEEEE
Q 032250 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLF----KRLGVEPLVIELDEMGPQG-PQ--LQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 71 ~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL----~e~gv~y~~vdld~~~~d~-~e--iqe~L~~~~G~~TVP~VFI 142 (144)
-.+.++++..+..+++|.++.||||++.-.+| +++|++...|.+|...-.+ +. .-..+.+..|...+|.+|+
T Consensus 141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 44677777788999999999999999876555 5779998889888641000 00 0112334458899999986
No 176
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.52 E-value=0.0084 Score=47.42 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=45.7
Q ss_pred cccccceeEEeccCCcchHHHHHHHhhhcCC---C-EEEEEeCCChhHHHHHHHHHhcCC---CcEEEEecCCCCCcHHH
Q 032250 52 RRRYGAVSVQAMASSYGSRLEESVKKTVSEN---P-VVVYSKTWCSYSSEVKLLFKRLGV---EPLVIELDEMGPQGPQL 124 (144)
Q Consensus 52 ~~~~g~~~~~~~~~~~~~~~~~~v~~~i~~~---~-VvvYsks~CPyC~rAK~lL~e~gv---~y~~vdld~~~~d~~ei 124 (144)
.++||.+.--. . .++.+++.... . |+-|+.+||+.|+.....|+++.. ..+++.++-. ..
T Consensus 78 ~~~~G~v~eis-~-------~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad-----~~ 144 (192)
T cd02988 78 KSKFGEVYEIS-K-------PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST-----QC 144 (192)
T ss_pred hCCCCeEEEeC-H-------HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH-----Hh
Confidence 35677776331 1 24444444332 2 556888999999999888876543 2345555542 11
Q ss_pred HHHHHHhcCCCeeeEEEE
Q 032250 125 QKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 125 qe~L~~~~G~~TVP~VFI 142 (144)
....+...+|++++
T Consensus 145 ----~~~~~i~~lPTlli 158 (192)
T cd02988 145 ----IPNYPDKNLPTILV 158 (192)
T ss_pred ----HhhCCCCCCCEEEE
Confidence 24458899999886
No 177
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.51 E-value=0.0061 Score=41.66 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcCC----CcEEEEecCCCCCcHHHHHHHHHhcCCC--eeeEEEE
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLGV----EPLVIELDEMGPQGPQLQKLLERLTGQH--TVPNVFI 142 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~gv----~y~~vdld~~~~d~~eiqe~L~~~~G~~--TVP~VFI 142 (144)
.-+++|..+||+.|...+..|++..- ++..+.+|.+ +..+ +.+..|.. .+|++.+
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~-----~~~~-~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDAD-----DFGR-HLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchH-----hhHH-HHHHcCCChhhCCEEEE
Confidence 34667888999999999988876432 2344444432 1122 34445777 9999886
No 178
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.48 E-value=0.0091 Score=42.08 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=19.3
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhc
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~ 105 (144)
+.-++.|..+|||+|+.....|.+.
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQL 45 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHH
Confidence 3457788889999999887666644
No 179
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=96.47 E-value=0.012 Score=45.50 Aligned_cols=45 Identities=13% Similarity=0.322 Sum_probs=27.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc---CCCcEEEEecCCCCCcHHHHHHHHH
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL---GVEPLVIELDEMGPQGPQLQKLLER 130 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~---gv~y~~vdld~~~~d~~eiqe~L~~ 130 (144)
-|+.|+.+|||+|++....|++. |+.+-.+++++ +.++.++++++
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~---~~~~~~~~~~~ 118 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKD---DRQKAISWLKE 118 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCC---CHHHHHHHHHH
Confidence 36678889999999876666544 55554445443 23445554443
No 180
>PLN02395 glutathione S-transferase
Probab=96.46 E-value=0.0076 Score=46.58 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=44.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+.+|+...| .+.+++-+|+++|++|+.++++.. .++...+.+.+.....+||.+..+|
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~--~~~~~~~~~~~~nP~g~vP~L~~~~ 60 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLM--KGEHKQPEYLALQPFGVVPVIVDGD 60 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccc--cCCcCCHHHHhhCCCCCCCEEEECC
Confidence 678987775 489999999999999999988763 1222334456677888999998765
No 181
>PRK10357 putative glutathione S-transferase; Provisional
Probab=96.46 E-value=0.0053 Score=47.11 Aligned_cols=54 Identities=7% Similarity=0.105 Sum_probs=42.9
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
.+|+...||++++++-+|+++|++|+.++++... + +..+.++....+||.+..+
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~--~---~~~~~~~nP~g~vP~L~~~ 55 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYN--A---DNGVAQYNPLGKVPALVTE 55 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC--C---chhhhhcCCccCCCeEEeC
Confidence 5899999999999999999999999999887641 1 1233456778899999853
No 182
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.011 Score=50.34 Aligned_cols=64 Identities=20% Similarity=0.459 Sum_probs=41.8
Q ss_pred HHHHHHhhhcCCC-EEEEEeCCChhHHHHHHHHHhcC----CCc--EEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 71 LEESVKKTVSENP-VVVYSKTWCSYSSEVKLLFKRLG----VEP--LVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 71 ~~~~v~~~i~~~~-VvvYsks~CPyC~rAK~lL~e~g----v~y--~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.++.|.+.-++.+ +|.|+.+||+.|+.....|+..- =.| -.+|+|++ + .+....|..++|+|+.
T Consensus 33 fe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~----p----~vAaqfgiqsIPtV~a 103 (304)
T COG3118 33 FEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE----P----MVAAQFGVQSIPTVYA 103 (304)
T ss_pred HHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc----h----hHHHHhCcCcCCeEEE
Confidence 3455555555555 55677799999999998888552 233 45555653 2 2344559999999863
No 183
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.43 E-value=0.0074 Score=49.93 Aligned_cols=70 Identities=10% Similarity=0.225 Sum_probs=49.0
Q ss_pred HHHHHHhhhcCCCEEEEEeCCChhHHHHHHHH----HhcCCCcEEEEecCCCCCcHHHH-----HHHHHhcCCCeeeEEE
Q 032250 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLF----KRLGVEPLVIELDEMGPQGPQLQ-----KLLERLTGQHTVPNVF 141 (144)
Q Consensus 71 ~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL----~e~gv~y~~vdld~~~~d~~eiq-----e~L~~~~G~~TVP~VF 141 (144)
-.+.++++..+..+++|.++.||||++.-.+| ++.|++...|.+|-.. . +++. ....+..|...+|.+|
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~-~-p~fp~~~~d~gqa~~l~v~~~PAl~ 211 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVI-N-PLLPDSRTDQGQAQRLGVKYFPALM 211 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCC-C-CCCCCCccChhHHHhcCCcccceEE
Confidence 34567777788999999999999999875555 4678988888887531 1 1110 1122345888999998
Q ss_pred E
Q 032250 142 I 142 (144)
Q Consensus 142 I 142 (144)
+
T Consensus 212 L 212 (248)
T PRK13703 212 L 212 (248)
T ss_pred E
Confidence 6
No 184
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.39 E-value=0.024 Score=40.20 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=40.7
Q ss_pred HHHHHHhhhcCCC--EEEEEeCCChhHHHHH-HHHHhcC------CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 71 LEESVKKTVSENP--VVVYSKTWCSYSSEVK-LLFKRLG------VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 71 ~~~~v~~~i~~~~--VvvYsks~CPyC~rAK-~lL~e~g------v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
..+.++..-.+++ ++.+..+||++|++.. .+|.... -.|..+.+|..+++ .. .+.+..+...+|+++
T Consensus 6 ~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e---~~-~~~~~~~~~~~P~~~ 81 (114)
T cd02958 6 FEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE---GQ-RFLQSYKVDKYPHIA 81 (114)
T ss_pred HHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc---HH-HHHHHhCccCCCeEE
Confidence 4455555555555 4456779999999864 3554322 24555655553222 22 345556788999886
Q ss_pred E
Q 032250 142 I 142 (144)
Q Consensus 142 I 142 (144)
+
T Consensus 82 ~ 82 (114)
T cd02958 82 I 82 (114)
T ss_pred E
Confidence 5
No 185
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.32 E-value=0.016 Score=37.96 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=39.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCCcEEEEecCCCCC-------------------cHHHHHH-----HHHhcC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGPQ-------------------GPQLQKL-----LERLTG 133 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~------gv~y~~vdld~~~~d-------------------~~eiqe~-----L~~~~G 133 (144)
|++|....||+|..+...+++. ++.+..+.+.-.+.. ..++.++ +.+..|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 5789999999999998888764 345555555433110 1112111 223457
Q ss_pred CCeeeEEEECC
Q 032250 134 QHTVPNVFIGK 144 (144)
Q Consensus 134 ~~TVP~VFI~G 144 (144)
...+|+++++|
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 88999999986
No 186
>smart00594 UAS UAS domain.
Probab=96.26 E-value=0.033 Score=40.37 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=39.9
Q ss_pred HHHHHHhhhcCC--CEEEEEeCCChhHHHHH-HHHHhcC------CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 71 LEESVKKTVSEN--PVVVYSKTWCSYSSEVK-LLFKRLG------VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 71 ~~~~v~~~i~~~--~VvvYsks~CPyC~rAK-~lL~e~g------v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
..+.+++..++. .++.+..+||++|++.. .+|.... -.|..+-+|...+++ . .+.+..+..++|.+.
T Consensus 16 ~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg---~-~l~~~~~~~~~P~~~ 91 (122)
T smart00594 16 LEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG---Q-RVSQFYKLDSFPYVA 91 (122)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH---H-HHHHhcCcCCCCEEE
Confidence 445555565554 46677779999999743 3443221 145554444432232 2 345556888999987
Q ss_pred E
Q 032250 142 I 142 (144)
Q Consensus 142 I 142 (144)
+
T Consensus 92 ~ 92 (122)
T smart00594 92 I 92 (122)
T ss_pred E
Confidence 6
No 187
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.15 E-value=0.026 Score=37.83 Aligned_cols=57 Identities=21% Similarity=0.092 Sum_probs=40.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHH-HhcCCCeeeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLE-RLTGQHTVPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~-~~~G~~TVP~VFI~G 144 (144)
.++|..+..+.|.+++-+|++.|++|+.+.++.. ++.++.-. .......||.+.+||
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~----~~~~~~~~~~~~~~g~vP~L~~~g 59 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA----EDLEKLKKDGSLMFQQVPMVEIDG 59 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH----HHHHhhccccCCCCCCCCEEEECC
Confidence 4688889999999999999999999999988753 12111100 112345899998776
No 188
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.11 E-value=0.023 Score=44.17 Aligned_cols=30 Identities=7% Similarity=0.310 Sum_probs=20.8
Q ss_pred EEEEEeCCChhHHHHHHHH----HhcCCCcEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLF----KRLGVEPLVIE 113 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL----~e~gv~y~~vd 113 (144)
|+.|+.+|||+|++....+ ++.++++..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 6678889999999764444 44566655554
No 189
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.10 E-value=0.02 Score=38.28 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=24.1
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecC
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDE 116 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~-------gv~y~~vdld~ 116 (144)
+.-++.|..+|||+|++....|.+. ++.+..+++|.
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~ 62 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD 62 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC
Confidence 3457888889999999776555433 34455556654
No 190
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.93 E-value=0.031 Score=37.70 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=27.2
Q ss_pred EEEEEeCCChhHHHHHHHHHh----cC--CCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKR----LG--VEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e----~g--v~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
++.|+.+||+.|++....|++ ++ -.++++-|..+ ++.++.++.+++.
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-EDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-SSHHHHHHHHHTC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-CCHHHHHHHHHhc
Confidence 678888999999987766653 33 44444444332 2345555555443
No 191
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=95.91 E-value=0.035 Score=42.32 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=22.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc---CCCcEEEEec
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL---GVEPLVIELD 115 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~---gv~y~~vdld 115 (144)
-++.|+.+|||.|++....|++. |+.+-.++++
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~ 101 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYK 101 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 46678889999999876666544 5444444443
No 192
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=95.83 E-value=0.025 Score=37.65 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=39.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCC-CeeeEEEEC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ-HTVPNVFIG 143 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~-~TVP~VFI~ 143 (144)
+.+|..++ .|.+++-+|++.|++|+.+.++-. .++...+.+.+.... ..+|.+.++
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~--~~~~~~~e~~~~~p~~g~vP~l~~~ 59 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFE--KGEHKSPEFLAINPMFGKVPALEDG 59 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETT--TTGGGSHHHHHHTTTSSSSSEEEET
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecc--cccccchhhhhcccccceeeEEEEC
Confidence 45666666 899999999999999999988853 233333555566566 899999987
No 193
>PTZ00062 glutaredoxin; Provisional
Probab=95.82 E-value=0.013 Score=47.00 Aligned_cols=56 Identities=7% Similarity=-0.079 Sum_probs=37.6
Q ss_pred HHHHhhhc--CC-CEEEEEeCCChhHHHHHHHHHhcCC---CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 73 ESVKKTVS--EN-PVVVYSKTWCSYSSEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 73 ~~v~~~i~--~~-~VvvYsks~CPyC~rAK~lL~e~gv---~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+.+.+.+. .. .|+.|+.+|||.|+....+|.++-- .+..+.||. | .+...||++++
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~---d-----------~~V~~vPtfv~ 68 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNL---A-----------DANNEYGVFEF 68 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEcc---c-----------cCcccceEEEE
Confidence 34445555 23 4556668999999999999987654 356666664 1 57778886654
No 194
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.73 E-value=0.041 Score=40.98 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=16.3
Q ss_pred CCEEEEEeCCChhHHHHHHHHH
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFK 103 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~ 103 (144)
.-++.|..+|||+|++....|.
T Consensus 63 ~~~l~f~a~~C~~C~~~~~~l~ 84 (173)
T PRK03147 63 GVFLNFWGTWCKPCEKEMPYMN 84 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHH
Confidence 3567888899999997654443
No 195
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.67 E-value=0.046 Score=40.56 Aligned_cols=68 Identities=12% Similarity=0.348 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcC-CCEEEE-E-------eCCChhHHHHHHHHH----hcCCCcE--EEEecCCCCCcHHHHH---HHHH-
Q 032250 70 RLEESVKKTVSE-NPVVVY-S-------KTWCSYSSEVKLLFK----RLGVEPL--VIELDEMGPQGPQLQK---LLER- 130 (144)
Q Consensus 70 ~~~~~v~~~i~~-~~VvvY-s-------ks~CPyC~rAK~lL~----e~gv~y~--~vdld~~~~d~~eiqe---~L~~- 130 (144)
+..+.+++.... .++.|| . ++|||+|.+|..+++ ...-... .+++.+. ++.++ ....
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r----~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDR----PEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---H----HHHC-TTSHHHH-
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCH----HHhCCCCCCceEc
Confidence 445666664443 344443 3 269999999985554 4322344 4455432 22221 1222
Q ss_pred -hcCCCeeeEEE
Q 032250 131 -LTGQHTVPNVF 141 (144)
Q Consensus 131 -~~G~~TVP~VF 141 (144)
......||+++
T Consensus 83 p~~~l~~IPTLi 94 (119)
T PF06110_consen 83 PDLKLKGIPTLI 94 (119)
T ss_dssp -CC---SSSEEE
T ss_pred ceeeeeecceEE
Confidence 25678899886
No 196
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=95.67 E-value=0.051 Score=42.31 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=30.3
Q ss_pred EEEEEeCCChhHH----HHHHHHHh---cCCCcEEEEecCCCCCcHHHHHHHHH
Q 032250 84 VVVYSKTWCSYSS----EVKLLFKR---LGVEPLVIELDEMGPQGPQLQKLLER 130 (144)
Q Consensus 84 VvvYsks~CPyC~----rAK~lL~e---~gv~y~~vdld~~~~d~~eiqe~L~~ 130 (144)
.+.|+..|||.|+ ..|+++++ .+.+++++=|+.++ +.++..+.+.+
T Consensus 37 ~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~-~~~~~~~y~~~ 89 (157)
T KOG2501|consen 37 GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR-DEESLDEYMLE 89 (157)
T ss_pred EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC-CHHHHHHHHHh
Confidence 3456779999999 44666554 45569998888763 45555554443
No 197
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.61 E-value=0.025 Score=45.79 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=24.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc---CCCcEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL---GVEPLVIE 113 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~---gv~y~~vd 113 (144)
.|++|+-+.||||+++...++++ |+.+.++.
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~ 143 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYLA 143 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEe
Confidence 48899999999999998888875 45554443
No 198
>PTZ00102 disulphide isomerase; Provisional
Probab=95.60 E-value=0.0098 Score=51.34 Aligned_cols=52 Identities=10% Similarity=0.225 Sum_probs=33.5
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC--------CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG--------VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g--------v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
-++.|..+||++|++....|++.. +.+..+|.+.. + ...+..+.+.+|++++
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~----~----~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN----E----TPLEEFSWSAFPTILF 437 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC----c----cchhcCCCcccCeEEE
Confidence 366788899999999988887542 22333444442 1 1233446788898865
No 199
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.026 Score=42.42 Aligned_cols=54 Identities=11% Similarity=0.200 Sum_probs=33.8
Q ss_pred ccCCcchHHHHHHHhhhcCCCEEEEEe---------CCChhHHHHHHHHHh----cCCC--cEEEEecC
Q 032250 63 MASSYGSRLEESVKKTVSENPVVVYSK---------TWCSYSSEVKLLFKR----LGVE--PLVIELDE 116 (144)
Q Consensus 63 ~~~~~~~~~~~~v~~~i~~~~VvvYsk---------s~CPyC~rAK~lL~e----~gv~--y~~vdld~ 116 (144)
..+..-+++++.+++.-+...|.+|.. +|||+|.+|..++.+ ...+ +..+++.+
T Consensus 7 ~~~~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 7 VLLPGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred cccchHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 334445666777777766666666543 799999999766653 3333 44455544
No 200
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=95.45 E-value=0.09 Score=38.74 Aligned_cols=66 Identities=9% Similarity=0.146 Sum_probs=43.1
Q ss_pred HHHhhhcCCC--EEEEEe--CCCh---hHHHHHHHHHhc--CCCcEEEEecCCCCCcHHHHHHHHHhcCCC--eeeEEEE
Q 032250 74 SVKKTVSENP--VVVYSK--TWCS---YSSEVKLLFKRL--GVEPLVIELDEMGPQGPQLQKLLERLTGQH--TVPNVFI 142 (144)
Q Consensus 74 ~v~~~i~~~~--VvvYsk--s~CP---yC~rAK~lL~e~--gv~y~~vdld~~~~d~~eiqe~L~~~~G~~--TVP~VFI 142 (144)
.+.+.+.+++ +|.|.. +||+ .|++.-.-+.+. .+.+-.||+++. ++...+.|.+..|.. .+|+|.+
T Consensus 10 nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~---~~~~~~~L~~~y~I~~~gyPTl~l 86 (116)
T cd03007 10 TFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDY---GEKLNMELGERYKLDKESYPVIYL 86 (116)
T ss_pred hHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccc---cchhhHHHHHHhCCCcCCCCEEEE
Confidence 4455666555 678999 8888 888877655443 255666777653 121234577777888 9998854
No 201
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.41 E-value=0.086 Score=37.73 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=16.1
Q ss_pred CEEEEEeCCChhHHHHHHHHH
Q 032250 83 PVVVYSKTWCSYSSEVKLLFK 103 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~ 103 (144)
-|+.|..+|||+|.+.-..|+
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~ 46 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLT 46 (126)
T ss_pred EEEEEECCCCccHHHHHHHHH
Confidence 477788899999997755554
No 202
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=95.22 E-value=0.11 Score=37.69 Aligned_cols=47 Identities=21% Similarity=0.499 Sum_probs=29.2
Q ss_pred cCCC-EEEEEeC-CChhHHHHHHHHH-------hcCCCcEEEEecCCCCCcHHHHHHHHH
Q 032250 80 SENP-VVVYSKT-WCSYSSEVKLLFK-------RLGVEPLVIELDEMGPQGPQLQKLLER 130 (144)
Q Consensus 80 ~~~~-VvvYsks-~CPyC~rAK~lL~-------e~gv~y~~vdld~~~~d~~eiqe~L~~ 130 (144)
+.++ |+.|+.+ |||+|.+....|+ ..|+.+..+..+.+ ...++++++
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~----~~~~~~~~~ 82 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD----PPVREFLKK 82 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS----HHHHHHHHH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC----HHHHHHHHh
Confidence 3444 6677778 9999997654443 34566666666653 336666555
No 203
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=95.05 E-value=0.038 Score=41.56 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=28.5
Q ss_pred HHHHHHhhhcCCC--EEEEEeCCChhHHHHHHH-HHhc------CCCcEEEEecC
Q 032250 71 LEESVKKTVSENP--VVVYSKTWCSYSSEVKLL-FKRL------GVEPLVIELDE 116 (144)
Q Consensus 71 ~~~~v~~~i~~~~--VvvYsks~CPyC~rAK~l-L~e~------gv~y~~vdld~ 116 (144)
.++.++.+-.+++ +++|..+|||+|++.++. +... .-.|..+.++.
T Consensus 12 ~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~ 66 (130)
T cd02960 12 YEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVH 66 (130)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEe
Confidence 4455555555554 557888999999988754 3322 22466555554
No 204
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.048 Score=43.72 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=51.0
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
++.+|+...-|.|+++...++++|++|+.+.++.. .+++..+++.++....+||++.-||
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~--~ge~~~pefl~~nP~~kVP~l~d~~ 61 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLV--KGEQKSPEFLKLNPLGKVPALEDGG 61 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecc--ccccCCHHHHhcCcCCCCCeEecCC
Confidence 46799999999999999999999999999988775 4666777777888899999987553
No 205
>PTZ00056 glutathione peroxidase; Provisional
Probab=94.80 E-value=0.085 Score=41.62 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=31.6
Q ss_pred CEEEEEeCCChhHHHHHHHHH----h---cCCCcEEEEecC----CCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFK----R---LGVEPLVIELDE----MGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~----e---~gv~y~~vdld~----~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
-++.|+.+|||+|.+-...|+ + .|+.+--+.+++ ..++.+++++.+++. | .++|.+
T Consensus 42 vlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~-~-~~fpvl 108 (199)
T PTZ00056 42 LMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKN-K-IKYNFF 108 (199)
T ss_pred EEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHc-C-CCceee
Confidence 366788899999986433333 2 355555555432 101345666666554 3 356754
No 206
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=94.71 E-value=0.15 Score=34.45 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=37.4
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHH--HHHHHHHh----cCCCeeeEEEECC
Q 032250 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQ--LQKLLERL----TGQHTVPNVFIGK 144 (144)
Q Consensus 86 vYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~e--iqe~L~~~----~G~~TVP~VFI~G 144 (144)
+|....-+.|.+++-+|++.|++|+.+.++-.. ++. -.+.+... ....+||.+..||
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~--~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g 65 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGD--APDYDRSQWLNEKFKLGLDFPNLPYYIDGD 65 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCC--ccccchHhhhccchhcCCcCCCCCEEEECC
Confidence 344445578889999999999999998887531 111 11222111 1557999998876
No 207
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=94.70 E-value=0.021 Score=45.92 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=35.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC----cEEE--EecCC--CCC------cHHHHHHHHHhcCCCe--eeEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVE----PLVI--ELDEM--GPQ------GPQLQKLLERLTGQHT--VPNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~----y~~v--dld~~--~~d------~~eiqe~L~~~~G~~T--VP~VFI~G 144 (144)
|.+|+..+|..|--|-++|.++.-+ .--+ |..+. +.| ..+.|+...+..|..+ .||++|||
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECC
Confidence 6799999999999999999876432 1111 21111 001 1346677777666555 59999998
No 208
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.54 E-value=0.072 Score=43.62 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=23.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHh---cC-CCcEEEEe
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKR---LG-VEPLVIEL 114 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e---~g-v~y~~vdl 114 (144)
.|++|+-+.||||+++..-+++ .| +.+.++.+
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 4889999999999998666543 23 66666643
No 209
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.091 Score=47.48 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=45.2
Q ss_pred HHHHhhhcCCC--EEEEEeCCChhHHH-------HHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 73 ESVKKTVSENP--VVVYSKTWCSYSSE-------VKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 73 ~~v~~~i~~~~--VvvYsks~CPyC~r-------AK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+.+.+.|..+. +|-|..+||.+|++ |-..|.+.|-+.....||-. .+ ..++..++.+.+|++.|
T Consensus 33 dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat----~~--~~~~~~y~v~gyPTlki 105 (493)
T KOG0190|consen 33 DNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT----EE--SDLASKYEVRGYPTLKI 105 (493)
T ss_pred ccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc----hh--hhhHhhhcCCCCCeEEE
Confidence 56677888776 45788999999994 45666676666666677653 12 34556668899999766
No 210
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.37 E-value=0.14 Score=39.52 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=30.4
Q ss_pred EEEEeCCChhHHHHHHHHH-------hcCCCcEEEEecC----CCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 85 VVYSKTWCSYSSEVKLLFK-------RLGVEPLVIELDE----MGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~-------e~gv~y~~vdld~----~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
++|..+|||+|.+-...|+ +.|+.+--+.+++ ...+.+++++.+++..| -++|.+
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~ 111 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLF 111 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCc
Confidence 4578999999997443333 3455555555432 11133556666554334 356765
No 211
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.33 E-value=0.047 Score=42.35 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHh--cCCCcEEEEe
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKR--LGVEPLVIEL 114 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e--~gv~y~~vdl 114 (144)
...|++|+.+.||||+++...+++ .++.+.++.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 346889999999999999998874 3555555544
No 212
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.16 Score=40.15 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=42.4
Q ss_pred HHHHHHhhhcCCC--EEEEEeCCChhHHHHHHHHHhc---------CCCcEEEEecCCCC------Cc--HHHHHHHHHh
Q 032250 71 LEESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKRL---------GVEPLVIELDEMGP------QG--PQLQKLLERL 131 (144)
Q Consensus 71 ~~~~v~~~i~~~~--VvvYsks~CPyC~rAK~lL~e~---------gv~y~~vdld~~~~------d~--~eiqe~L~~~ 131 (144)
+.+..+.+...++ ++||..++|+||.+.|+-+... .+.+..+++...++ +. ..-.++|++.
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 3444555554444 8899999999999887665421 12222233322111 11 0113578888
Q ss_pred cCCCeeeEEEE
Q 032250 132 TGQHTVPNVFI 142 (144)
Q Consensus 132 ~G~~TVP~VFI 142 (144)
.+.++.|+++.
T Consensus 111 f~vrstPtfvF 121 (182)
T COG2143 111 FAVRSTPTFVF 121 (182)
T ss_pred hccccCceEEE
Confidence 89999999874
No 213
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.24 E-value=0.072 Score=45.27 Aligned_cols=49 Identities=12% Similarity=0.320 Sum_probs=31.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhc---------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRL---------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~---------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
++.|..+||++|++....+++. ++.+-.+|++.. +. .. .+...+|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-----~~----~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-----DV----PP-FEVEGFPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-----cc----CC-CCccccCEEEE
Confidence 6678899999999887777643 233344444432 12 12 46788998876
No 214
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=94.06 E-value=0.12 Score=38.33 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=29.5
Q ss_pred CEEEEEeCCChhHHHHHHHHHh-------cCCCcEEEEecC----CCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDE----MGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e-------~gv~y~~vdld~----~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
-|+.|+.+||| |.+.-..|++ .|+.+--+.+++ ..++.+++++.+++..| -++|.+
T Consensus 25 vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~ 91 (152)
T cd00340 25 LLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMF 91 (152)
T ss_pred EEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceee
Confidence 35568889999 9976545543 233333333332 10123456666654233 356754
No 215
>PTZ00057 glutathione s-transferase; Provisional
Probab=94.01 E-value=0.15 Score=39.52 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=44.0
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHH---HHHHHH-HhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQ---LQKLLE-RLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~e---iqe~L~-~~~G~~TVP~VFI~G 144 (144)
++++|..+..+.|.+++-+|++.|++|+.+.+++. .++ .++... .......||.+.+||
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~---~~~~~~~~~~~~~~~nP~g~vP~L~~~~ 66 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGEN---GDAFIEFKNFKKEKDTPFEQVPILEMDN 66 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEecccc---chHHHHHHhccccCCCCCCCCCEEEECC
Confidence 47899988899999999999999999999977542 111 111111 346778999999876
No 216
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.092 Score=44.14 Aligned_cols=51 Identities=22% Similarity=0.496 Sum_probs=35.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCC-----cEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVE-----PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~-----y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
-+|=|+.+||+.|++.--+|..+.=+ |-.||||+- |. .+.-.|....|+..
T Consensus 24 v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c-------~~-taa~~gV~amPTFi 79 (288)
T KOG0908|consen 24 VVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDEC-------RG-TAATNGVNAMPTFI 79 (288)
T ss_pred EEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHh-------hc-hhhhcCcccCceEE
Confidence 47789999999999999999876433 455566652 22 23345888888754
No 217
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=93.95 E-value=0.18 Score=35.16 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=25.6
Q ss_pred CCEEEEEeC-CChhHHHHHHHHH-------hcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKT-WCSYSSEVKLLFK-------RLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks-~CPyC~rAK~lL~-------e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
.-|+.|... |||+|.+.-.-|+ +.|+.+-.+..|.. ++.++.+++.
T Consensus 27 ~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~----~~~~~~~~~~ 80 (124)
T PF00578_consen 27 PVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP----EEIKQFLEEY 80 (124)
T ss_dssp EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH----HHHHHHHHHH
T ss_pred cEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc----cchhhhhhhh
Confidence 345666666 9999986544443 33454555555442 4555555443
No 218
>PLN02412 probable glutathione peroxidase
Probab=93.88 E-value=0.24 Score=37.71 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=30.3
Q ss_pred EEEEEeCCChhHHHHHHHHH-------hcCCCcEEEEecCC---C-CCcHHHHHHHHHhcCCCeeeEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFK-------RLGVEPLVIELDEM---G-PQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~-------e~gv~y~~vdld~~---~-~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
|+.|+.+|||+|.+-...|+ +.|+.+--+..|.. + .+.+++++.+.+..| -++|.+.
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~-~~fpvl~ 100 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFK-AEFPIFD 100 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccC-CCCceEe
Confidence 45577899999996332333 33555545544321 0 123455555444434 4677764
No 219
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.65 E-value=0.23 Score=35.64 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=27.4
Q ss_pred CEEEEE-eCCChhHHHHHHHHHh-------cCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 83 PVVVYS-KTWCSYSSEVKLLFKR-------LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 83 ~VvvYs-ks~CPyC~rAK~lL~e-------~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
.|++|. .+|||+|.+-..-|.+ .|+.+-.+..|.. ++.++ ..+..+ -++|.+
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~----~~~~~-~~~~~~-~~~p~~ 85 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP----EKLEA-FDKGKF-LPFPVY 85 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH----HHHHH-HHHhcC-CCCeEE
Confidence 345554 6899999975544443 4555444444432 33333 333333 357754
No 220
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=93.62 E-value=0.21 Score=40.93 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCEEEEEeCCChhHHHHHHHHH-------hcCCCcEEEEecCC----CCCcHHHHHHHHHhcCCCeeeE
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFK-------RLGVEPLVIELDEM----GPQGPQLQKLLERLTGQHTVPN 139 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~-------e~gv~y~~vdld~~----~~d~~eiqe~L~~~~G~~TVP~ 139 (144)
.-|+.|+.+|||+|.+-...|. +.|+.+--+.+++. ..+.+++++.+.+..| .++|.
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g-~~fPv 168 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFK-AEFPI 168 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCcc
Confidence 3477889999999986433333 34555555555421 1134556655533223 34554
No 221
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=93.40 E-value=0.25 Score=44.98 Aligned_cols=22 Identities=9% Similarity=0.307 Sum_probs=17.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~ 105 (144)
|+.|+.+|||+|++....|+++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 6778889999999987776643
No 222
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=93.25 E-value=0.16 Score=41.48 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=39.1
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 91 WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 91 ~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.||+|+++-..|..+|++|.+.-||-.+ -.+++..+.+...+|.|-.||
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~-----kp~~f~~~sp~~~~P~l~~d~ 68 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSR-----KPEWFLDISPGGKPPVLKFDE 68 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCC-----CcHHHHhhCCCCCCCeEEeCC
Confidence 4999999999999999998877777641 234566778888999998875
No 223
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.20 E-value=0.29 Score=47.71 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=17.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~ 105 (144)
-|+-|+.+|||.|++....|+++
T Consensus 423 vll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 423 VILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEEECCcChhHHhHhHHHHHH
Confidence 36678889999999876666543
No 224
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.95 E-value=0.14 Score=38.27 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=28.5
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEec
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld 115 (144)
..+++|+||.|+-|+-+..+|+++.=+|+++-|+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 3588999999999999999999887777766543
No 225
>PRK10542 glutathionine S-transferase; Provisional
Probab=92.93 E-value=0.2 Score=38.06 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=38.9
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcH-HHHHHHHHhcCCCeeeEEEEC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGP-QLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~-eiqe~L~~~~G~~TVP~VFI~ 143 (144)
.+|+.. .+.+.+++-+|+++|++|+.+.++-. .++ ...+.+.++.....||++.++
T Consensus 2 ~l~~~~-~s~~~~~~~~L~~~gi~~e~~~v~~~--~~~~~~~~~~~~~nP~g~vPvL~~~ 58 (201)
T PRK10542 2 KLFYKP-GACSLASHITLRESGLDFTLVSVDLA--KKRLENGDDYLAINPKGQVPALLLD 58 (201)
T ss_pred ceeecc-cHHHHHHHHHHHHcCCCceEEEeecc--cccccCChHHHHhCcCCCCCeEEeC
Confidence 356544 23477888899999999999888753 111 122456677788899999874
No 226
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=92.92 E-value=0.24 Score=45.50 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=45.3
Q ss_pred HHHhhhcCCC----EEEEEeCCChhHHHHHHHHH--------hcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 74 SVKKTVSENP----VVVYSKTWCSYSSEVKLLFK--------RLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 74 ~v~~~i~~~~----VvvYsks~CPyC~rAK~lL~--------e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
++++...+++ ++=|+.+||--|+.-++..= -.++-.-..|+.. +.+++++.|+++ |.-.+|.++
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~---~~p~~~~lLk~~-~~~G~P~~~ 539 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA---NDPAITALLKRL-GVFGVPTYL 539 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC---CCHHHHHHHHHc-CCCCCCEEE
Confidence 5666665554 45689999999998765542 2344445556665 357888989887 888999876
Q ss_pred E
Q 032250 142 I 142 (144)
Q Consensus 142 I 142 (144)
+
T Consensus 540 f 540 (569)
T COG4232 540 F 540 (569)
T ss_pred E
Confidence 5
No 227
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=92.81 E-value=0.58 Score=33.46 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=27.7
Q ss_pred CCEEEEEeCCChh-HHHHHHHHH-------hcC---CCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKTWCSY-SSEVKLLFK-------RLG---VEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks~CPy-C~rAK~lL~-------e~g---v~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
.-|+.|..+||++ |.+....|+ +.+ +.+-.+.+|...++.+.+++.+++.
T Consensus 24 ~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~ 84 (142)
T cd02968 24 PVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAF 84 (142)
T ss_pred EEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 3577788899998 985443343 222 5555555554211234455555544
No 228
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=92.63 E-value=0.45 Score=33.86 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=28.0
Q ss_pred cCCCEEEEE--eCCChhHHHHHHHHH-------hcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 80 SENPVVVYS--KTWCSYSSEVKLLFK-------RLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 80 ~~~~VvvYs--ks~CPyC~rAK~lL~-------e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
..++++|+. ..|||+|.....-|. +.++.+-.+..|. .++.++..++. +...+|.+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~----~~~~~~~~~~~-~~~~~~~l 85 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS----PFSHKAWAEKE-GGLNFPLL 85 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHhcc-cCCCceEE
Confidence 344455544 469999997543333 2345444444443 23444444433 23455543
No 229
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=92.57 E-value=0.36 Score=38.21 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=29.0
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHH---hcCCCc------EEEEecCC
Q 032250 80 SENPVVVYSKTWCSYSSEVKLLFK---RLGVEP------LVIELDEM 117 (144)
Q Consensus 80 ~~~~VvvYsks~CPyC~rAK~lL~---e~gv~y------~~vdld~~ 117 (144)
..-.++-|..+||+.|+.-..+++ +.|+++ ..+++|+.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 344688999999999998776665 457777 78887763
No 230
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=92.56 E-value=0.52 Score=35.40 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCEEEEEeCCChhHHHHHHHHHh-------cCCCcEEEEecC
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDE 116 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e-------~gv~y~~vdld~ 116 (144)
..|+.|..+|||.|.+...-|.+ .++.+-.+.+|.
T Consensus 27 ~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 27 ALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 34777888999999864444432 234455555554
No 231
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.17 Score=40.73 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=41.2
Q ss_pred CEEEEE--eCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYS--KTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYs--ks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+-++|+ ++.|. .|+|-.|.=+|++|+++-++-.. ++++.-..+++.....+||++.|||
T Consensus 5 KpiLYSYWrSSCs--wRVRiALaLK~iDYey~PvnLlk-~~~q~~~ef~~iNPm~kVP~L~i~g 65 (217)
T KOG0868|consen 5 KPILYSYWRSSCS--WRVRIALALKGIDYEYKPVNLLK-EEDQSDSEFKEINPMEKVPTLVIDG 65 (217)
T ss_pred cchhhhhhcccch--HHHHHHHHHcCCCcceeehhhhc-chhhhhhHHhhcCchhhCCeEEECC
Confidence 344544 45665 47777888888888888776542 2233445677888889999999998
No 232
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=92.16 E-value=0.79 Score=32.66 Aligned_cols=52 Identities=29% Similarity=0.330 Sum_probs=26.3
Q ss_pred CCCEEEEE--eCCChhHHHHHHHH-------HhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeee
Q 032250 81 ENPVVVYS--KTWCSYSSEVKLLF-------KRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP 138 (144)
Q Consensus 81 ~~~VvvYs--ks~CPyC~rAK~lL-------~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP 138 (144)
.+.++|+. ..|||.|.+...-| ++.|+. ++-|..+ +.+++++.+++. + ..+|
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~--vv~is~d--~~~~~~~~~~~~-~-~~~~ 83 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAV--VIGVSPD--SVESHAKFAEKY-G-LPFP 83 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCE--EEEEcCC--CHHHHHHHHHHh-C-CCce
Confidence 34444444 47899998643333 334554 4444432 234566555543 3 2455
No 233
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.92 E-value=0.14 Score=33.23 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=15.2
Q ss_pred EeCCChhHHHHHHHHHhc
Q 032250 88 SKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 88 sks~CPyC~rAK~lL~e~ 105 (144)
+.+|||+|++....|.+.
T Consensus 40 ~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 40 WAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EcCcCHHHHhhchhHHHH
Confidence 599999999998777754
No 234
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.75 E-value=0.45 Score=42.85 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=40.3
Q ss_pred HHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 71 ~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~-----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+++.++++-+.-.+++|..+.|++|.+++++|++. ++.++++|..++ +.+.+.+|..-+|.+.|
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~--------~~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE--------PESETLPKITKLPTVAL 425 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc--------hhhHhhcCCCcCCEEEE
Confidence 34444443333346678888999999999999975 344555554432 12234456777898876
No 235
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=91.60 E-value=0.62 Score=34.46 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=13.8
Q ss_pred EEEEEeCCChhHHHHHH
Q 032250 84 VVVYSKTWCSYSSEVKL 100 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~ 100 (144)
|+.|..+|||+|.+.-.
T Consensus 26 vv~~~as~C~~c~~~~~ 42 (153)
T TIGR02540 26 LVVNVASECGFTDQNYR 42 (153)
T ss_pred EEEEeCCCCCchhhhHH
Confidence 67889999999986543
No 236
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=0.69 Score=39.60 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=38.6
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 80 SENPVVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 80 ~~~~VvvYsks~CPyC~rAK~lL~e~----gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+..-++.|..+||++|++....+++. .-......+|.. + -..+.+..+...+|++.+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~-----~-~~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCD-----E-HKDLCEKYGIQGFPTLKV 107 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCch-----h-hHHHHHhcCCccCcEEEE
Confidence 45569999999999999887666543 223344455542 1 234566678999999876
No 237
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=91.14 E-value=0.82 Score=33.01 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=13.1
Q ss_pred EEEEE-eCCChhHHHHHHHHH
Q 032250 84 VVVYS-KTWCSYSSEVKLLFK 103 (144)
Q Consensus 84 VvvYs-ks~CPyC~rAK~lL~ 103 (144)
|++|. .+|||.|.+...-|+
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~ 52 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALR 52 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHH
Confidence 44454 689999996644443
No 238
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=91.13 E-value=1 Score=33.01 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=27.7
Q ss_pred cCCCEEEEEe--CCChhHHHHH-------HHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 80 SENPVVVYSK--TWCSYSSEVK-------LLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 80 ~~~~VvvYsk--s~CPyC~rAK-------~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
+.+.++|+.. .|||.|.... +-+++.|+.+-.+.+|. .+++++++++. | .++|.+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~----~~~~~~~~~~~-~-~~~~~l 92 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK----PEKLSRFAEKE-L-LNFTLL 92 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHh-C-CCCeEE
Confidence 4455555554 3799997532 23334455444444332 35566555544 3 245543
No 239
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=90.64 E-value=0.61 Score=34.82 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=37.8
Q ss_pred CCCEEEEEeCCCh------hH--------HHHHHHHHhcCCCcEEEEecCCCCC----cHHHHHHHHHhcCCCeeeEEEE
Q 032250 81 ENPVVVYSKTWCS------YS--------SEVKLLFKRLGVEPLVIELDEMGPQ----GPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 81 ~~~VvvYsks~CP------yC--------~rAK~lL~e~gv~y~~vdld~~~~d----~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+++|.||--.-|. .- ..+.++|++.|++++.+++.++ ++ .+.+.+.|.+. |...+|.++|
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~-P~aF~~n~~V~~~L~~~-G~e~LPitlV 78 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQN-PQAFVENPEVNQLLQTE-GAEALPITLV 78 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT--TTHHHHSHHHHHHHHHH--GGG-SEEEE
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccC-HHHHHhCHHHHHHHHHc-CcccCCEEEE
Confidence 3567777766542 21 1456788999999999999986 32 23344555544 8899999999
Q ss_pred CC
Q 032250 143 GK 144 (144)
Q Consensus 143 ~G 144 (144)
||
T Consensus 79 dG 80 (123)
T PF06953_consen 79 DG 80 (123)
T ss_dssp TT
T ss_pred CC
Confidence 97
No 240
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.22 E-value=0.66 Score=35.79 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=33.4
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCC
Q 032250 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (144)
Q Consensus 80 ~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~ 117 (144)
...++++|-.+.|+=|+.=-+.|+.+|++.+.++.|+.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~ 61 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF 61 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH
Confidence 34579999999999999999999999999998888864
No 241
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.93 E-value=0.28 Score=35.07 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=19.4
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHh
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKR 104 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e 104 (144)
...|++|.-.+||+|.+....+++
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 346889999999999988766654
No 242
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=89.85 E-value=1.3 Score=33.48 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=21.7
Q ss_pred CCCEEEEE--eCCChhHHHHHHHHH-------hcCCCcEEEEecC
Q 032250 81 ENPVVVYS--KTWCSYSSEVKLLFK-------RLGVEPLVIELDE 116 (144)
Q Consensus 81 ~~~VvvYs--ks~CPyC~rAK~lL~-------e~gv~y~~vdld~ 116 (144)
.+.++||. ..|||.|......|. +.|+.+..+.+|.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 34555555 589999997554443 3455555555544
No 243
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=0.87 Score=40.53 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=51.8
Q ss_pred cchHHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhc---CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 67 YGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL---GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 67 ~~~~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~---gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
...++.+.++.+-......-|..-.|..|..+.+.|.-. +-...-.-+| +.-+|++.+.. +...||+||.|
T Consensus 103 ~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~Id-----Ga~Fq~Evear-~IMaVPtvfln 176 (520)
T COG3634 103 EDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAID-----GALFQDEVEAR-NIMAVPTVFLN 176 (520)
T ss_pred hhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEec-----chhhHhHHHhc-cceecceEEEc
Confidence 345677888888888888888888888888777766654 3334444444 35677777655 78899999998
Q ss_pred C
Q 032250 144 K 144 (144)
Q Consensus 144 G 144 (144)
|
T Consensus 177 G 177 (520)
T COG3634 177 G 177 (520)
T ss_pred c
Confidence 7
No 244
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=89.23 E-value=0.58 Score=38.99 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=41.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEE------EecCC--------CCCcHHHHHHHHHhcCCCee--eEEEECC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVI------ELDEM--------GPQGPQLQKLLERLTGQHTV--PNVFIGK 144 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~v------dld~~--------~~d~~eiqe~L~~~~G~~TV--P~VFI~G 144 (144)
|.+|+..+|..|--|-+.|.++.-+..++ |..+. ..+.-+.|..+.+..|.++| ||+||+|
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnG 121 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNG 121 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeec
Confidence 77999999999999999998875443222 11110 01234567777777777665 9999987
No 245
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=89.01 E-value=1.1 Score=34.92 Aligned_cols=55 Identities=16% Similarity=0.441 Sum_probs=26.4
Q ss_pred EEEEeCCChhHHHHH-HHHHh------cCCCcEEEEecCCCCCcHHHHHHH----HHhcCCCeeeEEE
Q 032250 85 VVYSKTWCSYSSEVK-LLFKR------LGVEPLVIELDEMGPQGPQLQKLL----ERLTGQHTVPNVF 141 (144)
Q Consensus 85 vvYsks~CPyC~rAK-~lL~e------~gv~y~~vdld~~~~d~~eiqe~L----~~~~G~~TVP~VF 141 (144)
+-.+.+||.+|+... +.|+. ++-.|.-|.+|.+ ..+.+...+ ..++|....|..+
T Consensus 42 l~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDre--e~Pdid~~y~~~~~~~~~~gGwPl~v 107 (163)
T PF03190_consen 42 LSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDRE--ERPDIDKIYMNAVQAMSGSGGWPLTV 107 (163)
T ss_dssp EEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETT--T-HHHHHHHHHHHHHHHS---SSEEE
T ss_pred EEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccc--cCccHHHHHHHHHHHhcCCCCCCceE
Confidence 345669999999553 34433 2335666667764 345554433 2345666677544
No 246
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=88.68 E-value=1.2 Score=30.23 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=31.8
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 90 s~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
+..+.|.++..+|++.|++|+.+++... .. ....-.||.+.+||
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~----~~-------~~P~GkVP~L~~dg 58 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANA----EF-------MSPSGKVPFIRVGN 58 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCc----cc-------cCCCCcccEEEECC
Confidence 4578899999999999999999865321 01 11235799887776
No 247
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=88.61 E-value=1.6 Score=31.31 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=32.5
Q ss_pred EEEEeCC-ChhHH------HHHHHHHh--------cCCCcEEEEecCCCCCcHHHHHHHHHhc-CCCeeeEEEECC
Q 032250 85 VVYSKTW-CSYSS------EVKLLFKR--------LGVEPLVIELDEMGPQGPQLQKLLERLT-GQHTVPNVFIGK 144 (144)
Q Consensus 85 vvYsks~-CPyC~------rAK~lL~e--------~gv~y~~vdld~~~~d~~eiqe~L~~~~-G~~TVP~VFI~G 144 (144)
+||+.+. |+.|. ....||+. ..+.++++|+... ++.++.++...++- .--=.|.|+|+|
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p-~~~~~~~~~a~~I~ede~fYPlV~i~~ 75 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENP-PENDHDQQFAERILEDELFYPLVVIND 75 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT-----HHHHHHHHHHHTTSS-SSEEEETT
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCC-CccHHHHHHHHHHHhcccccceEEECC
Confidence 4777764 88886 44566653 2345788888775 23344455555543 334579999986
No 248
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=88.56 E-value=2.2 Score=30.75 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=14.2
Q ss_pred CCCEE-EEEeCC-ChhHHHHHHHHH
Q 032250 81 ENPVV-VYSKTW-CSYSSEVKLLFK 103 (144)
Q Consensus 81 ~~~Vv-vYsks~-CPyC~rAK~lL~ 103 (144)
.++++ .|...| ||+|.+....|+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~ 50 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFN 50 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHH
Confidence 34444 445556 799997665554
No 249
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=87.09 E-value=3.9 Score=29.77 Aligned_cols=59 Identities=19% Similarity=0.405 Sum_probs=37.8
Q ss_pred cCCCEEEEEeCC-ChhHHHHHHHHHhc------CCCcEEEEecCCCCCcHHHHHHHHHhcCC-CeeeEEEE
Q 032250 80 SENPVVVYSKTW-CSYSSEVKLLFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQ-HTVPNVFI 142 (144)
Q Consensus 80 ~~~~VvvYsks~-CPyC~rAK~lL~e~------gv~y~~vdld~~~~d~~eiqe~L~~~~G~-~TVP~VFI 142 (144)
...+++||=-+. ||=..+|.+-|++. ++++.++||-+. ..+.+++++.+|. ..-||+++
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~----R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEY----RPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGG----HHHHHHHHHHHT----SSEEEE
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeC----chhHHHHHHHhCCCcCCCcEEE
Confidence 355677777665 99999998877632 278888888775 4677888877664 66899886
No 250
>PRK13599 putative peroxiredoxin; Provisional
Probab=86.54 E-value=1.3 Score=35.38 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=20.5
Q ss_pred EEEEeCCChhHHHH-------HHHHHhcCCCcEEEEecC
Q 032250 85 VVYSKTWCSYSSEV-------KLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 85 vvYsks~CPyC~rA-------K~lL~e~gv~y~~vdld~ 116 (144)
+.|.++|||.|..- ..-|+++|+.+--+.+|.
T Consensus 34 ~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35667899999963 333445566666666665
No 251
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=86.38 E-value=1.4 Score=34.53 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=22.6
Q ss_pred CCEEE--EEeCCChhHHHHH-------HHHHhcCCCcEEEEecC
Q 032250 82 NPVVV--YSKTWCSYSSEVK-------LLFKRLGVEPLVIELDE 116 (144)
Q Consensus 82 ~~Vvv--Ysks~CPyC~rAK-------~lL~e~gv~y~~vdld~ 116 (144)
+.+++ |..+|||.|..-. .-|++.|+.+-.+.+|.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34444 6778999999643 33445677666666665
No 252
>PRK13190 putative peroxiredoxin; Provisional
Probab=86.02 E-value=1.8 Score=34.09 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCEEE--EEeCCChhHHHHHHHHH-------hcCCCcEEEEecC
Q 032250 82 NPVVV--YSKTWCSYSSEVKLLFK-------RLGVEPLVIELDE 116 (144)
Q Consensus 82 ~~Vvv--Ysks~CPyC~rAK~lL~-------e~gv~y~~vdld~ 116 (144)
+.+++ |..+|||.|..-..-|+ ++|+.+-.+.+|.
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34544 67899999996543333 4566655555554
No 253
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=85.86 E-value=3.2 Score=32.07 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=22.1
Q ss_pred CCCEEEEE--eCCChhHHHHHHH-------HHhcCCCcEEEEecC
Q 032250 81 ENPVVVYS--KTWCSYSSEVKLL-------FKRLGVEPLVIELDE 116 (144)
Q Consensus 81 ~~~VvvYs--ks~CPyC~rAK~l-------L~e~gv~y~~vdld~ 116 (144)
.+.++||. ..|||.|.+--.. |++.|+.+-.+..|.
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 44566655 6899999974333 344566655555554
No 254
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=85.82 E-value=0.36 Score=43.72 Aligned_cols=26 Identities=15% Similarity=0.508 Sum_probs=22.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCc
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEP 109 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y 109 (144)
.+-|..+||++|++...++++++-.|
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHh
Confidence 66788899999999999999886554
No 255
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=85.58 E-value=0.69 Score=40.27 Aligned_cols=70 Identities=14% Similarity=0.366 Sum_probs=42.3
Q ss_pred hHHHHHHHhhhcCC-CEEEEEeCCChhHHHHHHHHHhcCCCcEEE----EecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 69 SRLEESVKKTVSEN-PVVVYSKTWCSYSSEVKLLFKRLGVEPLVI----ELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 69 ~~~~~~v~~~i~~~-~VvvYsks~CPyC~rAK~lL~e~gv~y~~v----dld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
+++.+++++.-++. =.|=|..+||.+|++...++++.|.+.+.+ .+.+. |.-.. .+++...|.+..|+|-
T Consensus 31 eDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKl--DaT~f-~aiAnefgiqGYPTIk 105 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKL--DATRF-PAIANEFGIQGYPTIK 105 (468)
T ss_pred hhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccc--ccccc-hhhHhhhccCCCceEE
Confidence 34445555544333 266788899999999999999887654322 22222 11112 2334445788888874
No 256
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=85.20 E-value=2.8 Score=32.88 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCEEEEEeCCChhHHHHH---HHHHh---cCCCcEEEEecC----CCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 82 NPVVVYSKTWCSYSSEVK---LLFKR---LGVEPLVIELDE----MGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK---~lL~e---~gv~y~~vdld~----~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
.-+++|..+||++|.... ++.++ .|+.+--+.+++ ...+.+++++.+.+..| .++|.+
T Consensus 27 vvLVvf~AS~C~~~~q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 27 VLLIVNVASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG-VTFPMF 94 (183)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC-CCceeE
Confidence 347788999999997432 22222 344444444442 11133456655543334 467754
No 257
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=85.02 E-value=1.8 Score=35.81 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=40.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCC--cEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVE--PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~--y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.|-||.-.+|--|-..-+.|+++|.- .+++|-..- . -.+++ .+.-+||-||+||
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p----~--f~~~~--~~V~SvP~Vf~DG 67 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELP----P--FLAFE--KGVISVPSVFIDG 67 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCC----h--HHHhh--cceeecceEEEcC
Confidence 58899999999999999999999984 555555542 1 11222 3678999999997
No 258
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=84.08 E-value=1 Score=33.29 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=19.0
Q ss_pred CCCEEEEEeCCChhHHHHHHHHH
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFK 103 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~ 103 (144)
...|+.|.-..||||.++...+.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~ 38 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILE 38 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHH
Confidence 45689999999999998876665
No 259
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.15 E-value=2.9 Score=35.80 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=33.6
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhc------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
...++.|..+||++|++....+++. +..+++..+|.. ....+....+.+.+|++.+
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~------~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT------VHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc------hHHHHhhhhcccCCceEEE
Confidence 3458888999999999885555433 234455555542 1223344446667776643
No 260
>PRK15000 peroxidase; Provisional
Probab=81.03 E-value=4.9 Score=31.65 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=22.2
Q ss_pred cCCCEEEEEeC--CChhHHHHHHHH-------HhcCCCcEEEEecC
Q 032250 80 SENPVVVYSKT--WCSYSSEVKLLF-------KRLGVEPLVIELDE 116 (144)
Q Consensus 80 ~~~~VvvYsks--~CPyC~rAK~lL-------~e~gv~y~~vdld~ 116 (144)
..+.+++|..+ |||.|..-..-| +++|+.+--+.+|.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 44567776665 799999743333 34555555555553
No 261
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=80.99 E-value=4.3 Score=26.88 Aligned_cols=26 Identities=15% Similarity=0.005 Sum_probs=22.1
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEec
Q 032250 90 TWCSYSSEVKLLFKRLGVEPLVIELD 115 (144)
Q Consensus 90 s~CPyC~rAK~lL~e~gv~y~~vdld 115 (144)
+.+|+|.++..+|+-.|++|+++...
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~ 39 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN 39 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC
Confidence 45899999999999999999877443
No 262
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=80.97 E-value=7.7 Score=29.31 Aligned_cols=46 Identities=7% Similarity=-0.028 Sum_probs=23.8
Q ss_pred CEEEEEeCC-ChhHHHHHHHHHhcC---CCcEEEEecCCCCCcHHHHHHHHH
Q 032250 83 PVVVYSKTW-CSYSSEVKLLFKRLG---VEPLVIELDEMGPQGPQLQKLLER 130 (144)
Q Consensus 83 ~VvvYsks~-CPyC~rAK~lL~e~g---v~y~~vdld~~~~d~~eiqe~L~~ 130 (144)
-|+.|..+| ||.|.+-..-|+++- -.+.++=|..+ +....++++++
T Consensus 47 vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D--~~~~~~~f~~~ 96 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISAD--LPFAQKRFCGA 96 (167)
T ss_pred EEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCC--CHHHHHHHHHh
Confidence 355566667 999997654444321 13455555432 22344444443
No 263
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=80.11 E-value=14 Score=24.34 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=43.9
Q ss_pred HHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 73 ~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+..++.-...+|.+.+-+....=.+.++.+++.+.+...+..+.. .+..+.+..+...+|+++|
T Consensus 25 ~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~i~~iP~~~l 88 (95)
T PF13905_consen 25 ELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDD------NNSELLKKYGINGIPTLVL 88 (95)
T ss_dssp HHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTH------HHHHHHHHTT-TSSSEEEE
T ss_pred HHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcc------hHHHHHHHCCCCcCCEEEE
Confidence 333333334566666666667778889999999888887777653 2456677779999999987
No 264
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=80.04 E-value=2 Score=31.13 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=23.9
Q ss_pred CCCEEEEEeCCChhHHHHHHHH----Hhc----CCCcEEEEecC
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLF----KRL----GVEPLVIELDE 116 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL----~e~----gv~y~~vdld~ 116 (144)
...|++|.-..||+|.+.-..+ +++ .+.+..+.+-.
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 3458999999999999874443 444 45566666643
No 265
>PRK13189 peroxiredoxin; Provisional
Probab=79.82 E-value=4.1 Score=32.65 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=22.0
Q ss_pred CCCEEE--EEeCCChhHHHHH-------HHHHhcCCCcEEEEecC
Q 032250 81 ENPVVV--YSKTWCSYSSEVK-------LLFKRLGVEPLVIELDE 116 (144)
Q Consensus 81 ~~~Vvv--Ysks~CPyC~rAK-------~lL~e~gv~y~~vdld~ 116 (144)
.+.+++ |..+|||.|..-. .-|++.|+..-.+.+|.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 333544 5678999999532 33445566666666665
No 266
>PRK13191 putative peroxiredoxin; Provisional
Probab=79.53 E-value=4.1 Score=32.55 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=21.3
Q ss_pred EEEeCCChhHHHHHH-------HHHhcCCCcEEEEecCC
Q 032250 86 VYSKTWCSYSSEVKL-------LFKRLGVEPLVIELDEM 117 (144)
Q Consensus 86 vYsks~CPyC~rAK~-------lL~e~gv~y~~vdld~~ 117 (144)
.|..+|||.|..-.. -|+++|+++--+.+|..
T Consensus 40 f~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 457789999997443 34455776666666653
No 267
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=78.54 E-value=9.8 Score=31.65 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=25.1
Q ss_pred HhhhcCCCEEEEE--eCCChhHHHH-------HHHHHhcCCCcEEEEecC
Q 032250 76 KKTVSENPVVVYS--KTWCSYSSEV-------KLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 76 ~~~i~~~~VvvYs--ks~CPyC~rA-------K~lL~e~gv~y~~vdld~ 116 (144)
.+....+.+++|. .+|||.|..- ..-+++.|+++--+-+|.
T Consensus 93 sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3333455666664 5899999973 333445666666666654
No 268
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=76.73 E-value=10 Score=29.66 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=20.6
Q ss_pred CCCEEEEE--eCCChhHHHHHHH-------HHhcCCCcEEEEecC
Q 032250 81 ENPVVVYS--KTWCSYSSEVKLL-------FKRLGVEPLVIELDE 116 (144)
Q Consensus 81 ~~~VvvYs--ks~CPyC~rAK~l-------L~e~gv~y~~vdld~ 116 (144)
.+.+++|. ..|||.|.+--.- |++.|+.+--+..|.
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~ 75 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 75 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 33455554 6899999974333 334455555555444
No 269
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.14 E-value=10 Score=27.48 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=37.9
Q ss_pred cCCCEEEEEeCC-ChhHH------HHHHHHHhc--------CCCcEEEEecCCCCCcHHHHHHHHHhc-CCCeeeEEEEC
Q 032250 80 SENPVVVYSKTW-CSYSS------EVKLLFKRL--------GVEPLVIELDEMGPQGPQLQKLLERLT-GQHTVPNVFIG 143 (144)
Q Consensus 80 ~~~~VvvYsks~-CPyC~------rAK~lL~e~--------gv~y~~vdld~~~~d~~eiqe~L~~~~-G~~TVP~VFI~ 143 (144)
+..++++|+.+. |-.|. ..-.||+.. ...|+++|+... ++.+..++...++- .-.-.|.|.|+
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~-~~e~~~~~~aekI~~dey~YPlivve 81 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNP-PLEDHDLQFAEKIEQDEYFYPLIVVE 81 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCC-ccHHHHHHHHHHHhcccccceEEEEc
Confidence 345788999865 77776 445666632 234677777532 34444444444432 34557999887
Q ss_pred C
Q 032250 144 K 144 (144)
Q Consensus 144 G 144 (144)
|
T Consensus 82 d 82 (106)
T COG4837 82 D 82 (106)
T ss_pred c
Confidence 5
No 270
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=74.91 E-value=6.8 Score=33.20 Aligned_cols=39 Identities=8% Similarity=0.231 Sum_probs=30.3
Q ss_pred hhcCCCEEEEEeC-------CChhHHHHHHHHHhcCCCcEEEEecC
Q 032250 78 TVSENPVVVYSKT-------WCSYSSEVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 78 ~i~~~~VvvYsks-------~CPyC~rAK~lL~e~gv~y~~vdld~ 116 (144)
..+...|.+|.-+ -.|||.++..+|+..+++|+.++-..
T Consensus 40 d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~ 85 (281)
T KOG4244|consen 40 DYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL 85 (281)
T ss_pred ccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc
Confidence 3444556677654 26899999999999999999987664
No 271
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=74.13 E-value=14 Score=29.93 Aligned_cols=47 Identities=6% Similarity=0.062 Sum_probs=35.4
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHH
Q 032250 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKL 127 (144)
Q Consensus 80 ~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~ 127 (144)
....+.+|.|+.|+.|......+..-+-++.+.-|+... |...++..
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~-dD~~Ir~W 154 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQG-DDERIRQW 154 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCC-CHHHHHHH
Confidence 455799999999999998777777778888888888542 44556654
No 272
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=73.09 E-value=3.4 Score=35.90 Aligned_cols=59 Identities=15% Similarity=0.362 Sum_probs=37.5
Q ss_pred HHHhhhcCCCE--EEEEeCCChhHHHHHHHHHhcCCC-----------cEEEEecCCCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 74 SVKKTVSENPV--VVYSKTWCSYSSEVKLLFKRLGVE-----------PLVIELDEMGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 74 ~v~~~i~~~~V--vvYsks~CPyC~rAK~lL~e~gv~-----------y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
-++.++..+.+ +-|..+||+|+++.+.++++.... .-.||+|. ++.++..+....+|++
T Consensus 5 N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~--------e~~ia~ky~I~KyPTl 76 (375)
T KOG0912|consen 5 NIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK--------EDDIADKYHINKYPTL 76 (375)
T ss_pred cHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch--------hhHHhhhhccccCcee
Confidence 34556666654 468899999999999999865322 12334443 3455565566666664
No 273
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=71.02 E-value=24 Score=30.20 Aligned_cols=57 Identities=7% Similarity=0.036 Sum_probs=36.5
Q ss_pred HHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 72 ~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
.+.+++. .++++|.+.+..-+-.+++..|++.|+++.++++.. ++..+.+.+.+...
T Consensus 15 ~~~l~~~--~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~-~p~~~~v~~~~~~~ 71 (374)
T cd08183 15 PALAAEL--GRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAG-EPSVELVDAAVAEA 71 (374)
T ss_pred HHHHHHc--CCcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCC-CcCHHHHHHHHHHH
Confidence 3444443 256666665554467778888999999998887655 35555565555443
No 274
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=67.67 E-value=2.2 Score=36.35 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=50.9
Q ss_pred hhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 78 TVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 78 ~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
.......++|-.++.-..++++-++.++|++|+..+|+-- .++....++.++.....||++.
T Consensus 21 ~~~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~--~geh~epwFmrlNp~gevPVl~ 82 (325)
T KOG4420|consen 21 HWPRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLP--QGEHKEPWFMRLNPGGEVPVLI 82 (325)
T ss_pred CCchhcceeeecCcccccceeeeehhhcccccceeeccCc--cccccCchheecCCCCCCceEe
Confidence 3333348999999999999999999999999999999874 6677777788887777888654
No 275
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=67.08 E-value=11 Score=26.60 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=23.8
Q ss_pred HHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhc
Q 032250 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 70 ~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~ 105 (144)
++++.+.++-+.-.+++|..+. ++|..++++|++.
T Consensus 9 qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~ 43 (94)
T cd02974 9 QLKAYLERLENPVELVASLDDS-EKSAELLELLEEI 43 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHH
Confidence 3444454444444566677766 9999999999876
No 276
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=66.61 E-value=8.1 Score=26.95 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=24.7
Q ss_pred EEEeCCChhHHHHHHHHHhcCC--CcEEEEecC
Q 032250 86 VYSKTWCSYSSEVKLLFKRLGV--EPLVIELDE 116 (144)
Q Consensus 86 vYsks~CPyC~rAK~lL~e~gv--~y~~vdld~ 116 (144)
||.-..||+|.+..++++.+.. .++.+++..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~ 33 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQS 33 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3556789999999999998864 578888843
No 277
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.94 E-value=21 Score=28.79 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=43.8
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
...++.-+..+.|.-+|.+|.-.|++|+.+-+... +. . ..++....-.++|.+-|||
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~--~~--w-~~~K~~~pfgqlP~l~vDg 59 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITME--DA--W-EELKDKMPFGQLPVLEVDG 59 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccc--cc--h-hhhcccCCCCCCCEEeECC
Confidence 34566668899999999999999999999999885 22 1 2233445677899999987
No 278
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=65.60 E-value=22 Score=29.61 Aligned_cols=63 Identities=22% Similarity=0.198 Sum_probs=43.8
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHhcCC-CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 80 SENPVVVYSKTWCSYSSEVKLLFKRLGV-EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 80 ~~~~VvvYsks~CPyC~rAK~lL~e~gv-~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.-+.|.+|+..+|+-.--+|.+|.+.+- ....|+|+.. +-..+.+.+..+.+...-=.||+|+
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~--~L~~l~~l~~~l~~~~~kFIlf~DD 114 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE--DLGDLPELLDLLRDRPYKFILFCDD 114 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH--HhccHHHHHHHHhcCCCCEEEEecC
Confidence 4567999999999999999999987644 3778888774 3344555555554444334566664
No 279
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=65.45 E-value=6.2 Score=29.46 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=25.3
Q ss_pred CEEEEEeCCChhHHHHHHHHH----hc-CCCcEEEEecC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFK----RL-GVEPLVIELDE 116 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~----e~-gv~y~~vdld~ 116 (144)
+|++|.-..||||-.+...|+ +. +++++..-+.-
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 488999999999997765554 55 77777776653
No 280
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=64.68 E-value=13 Score=27.41 Aligned_cols=47 Identities=11% Similarity=0.361 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHHhc-----CCCcEEEEecCCCCCcHHHHHHHHHhcC--CCeeeEEEECC
Q 032250 91 WCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTG--QHTVPNVFIGK 144 (144)
Q Consensus 91 ~CPyC~rAK~lL~e~-----gv~y~~vdld~~~~d~~eiqe~L~~~~G--~~TVP~VFI~G 144 (144)
.||+|..+.-+|... .++.+.|+.-.- +.++.+..| ..+.|+++.++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP-------R~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP-------RQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc-------hHHHHHHhChhccCCCEEEeCC
Confidence 499999999999854 445555555542 233333333 46789988753
No 281
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=64.37 E-value=36 Score=29.04 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=31.8
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~~ 131 (144)
.+++|.+.+. -++..+++..|++.|+++.+++ +..+ +..+.+.+..+..
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~-p~~~~v~~~~~~~ 79 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEAD-PPEAVVEAAVEAA 79 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCC-cCHHHHHHHHHHH
Confidence 4555555443 5678899999999999887665 4433 4445565555444
No 282
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=63.91 E-value=38 Score=28.81 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=32.2
Q ss_pred CCEEEEEeC---CChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKT---WCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks---~CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~~ 131 (144)
++++|.+.+ ..++..++++.|++.|+++.+++ +..+ +..+.+.+.+...
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~-p~~~~v~~~~~~~ 77 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPN-PTEAAVEAGLAAY 77 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCC-CCHHHHHHHHHHH
Confidence 355554432 36788999999999999887775 4443 4555566665544
No 283
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=63.90 E-value=38 Score=24.40 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=34.9
Q ss_pred HHHHHhhhcCCC-EEEEEe-C----CChhHHHH------HHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeE
Q 032250 72 EESVKKTVSENP-VVVYSK-T----WCSYSSEV------KLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPN 139 (144)
Q Consensus 72 ~~~v~~~i~~~~-VvvYsk-s----~CPyC~rA------K~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~ 139 (144)
++.++..-++.| ++||-- + ||.+|+.+ .+++++ .|-.+-.|-..+++ ..++...+.+++|.
T Consensus 7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~eg----~~la~~l~~~~~P~ 79 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAKPEG----YRVSQALRERTYPF 79 (116)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCChHH----HHHHHHhCCCCCCE
Confidence 344455555554 445544 3 68999743 555554 35444444331222 22455567889998
Q ss_pred EEE
Q 032250 140 VFI 142 (144)
Q Consensus 140 VFI 142 (144)
+.+
T Consensus 80 ~~~ 82 (116)
T cd02991 80 LAM 82 (116)
T ss_pred EEE
Confidence 865
No 284
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=63.37 E-value=28 Score=25.99 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=22.3
Q ss_pred cCCCEEEEEe--CCChhHHHH--------HHHHHhcCCC-cEEEEecC
Q 032250 80 SENPVVVYSK--TWCSYSSEV--------KLLFKRLGVE-PLVIELDE 116 (144)
Q Consensus 80 ~~~~VvvYsk--s~CPyC~rA--------K~lL~e~gv~-y~~vdld~ 116 (144)
..++++||.- .|||.|..- ..-|+++|+. .-.+-.|.
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 3446665555 579999975 3444556663 55555554
No 285
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=62.42 E-value=25 Score=27.36 Aligned_cols=47 Identities=4% Similarity=0.020 Sum_probs=34.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
|++=+++.=|+++++...|++.|++|+..=+.-+. ..+++.+.+++.
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHR-tp~~~~~~~~~a 49 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHR-TPELMLEYAKEA 49 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECccc-CHHHHHHHHHHH
Confidence 44556677899999999999999998887776653 345555655544
No 286
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=61.44 E-value=31 Score=25.57 Aligned_cols=50 Identities=12% Similarity=-0.053 Sum_probs=36.8
Q ss_pred cchHHHHHHHhhh-cCCCEEEEEeCCChhHH------------HHHHHHHhcCCCcEEEEecC
Q 032250 67 YGSRLEESVKKTV-SENPVVVYSKTWCSYSS------------EVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 67 ~~~~~~~~v~~~i-~~~~VvvYsks~CPyC~------------rAK~lL~e~gv~y~~vdld~ 116 (144)
...++.+.++++. ....|++.|......+. ..+++|++.+++|..+.+.+
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 3345566666653 45567777777766666 78999999999998888876
No 287
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=60.72 E-value=12 Score=25.74 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=29.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~ 117 (144)
|++++.++|+--.-++.+.+..++++..++..+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccc
Confidence 6799999999999999999999988877776543
No 288
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=59.78 E-value=47 Score=28.35 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=32.2
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~~ 131 (144)
.+++|.+... .++..+++..|++.|+++.+++ +.. +++.+.+.+.....
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~-~p~~~~v~~~~~~~ 76 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVS-EPTDESVEEGVKLA 76 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCC-CcCHHHHHHHHHHH
Confidence 3555555432 6688899999999999887775 443 34555566555444
No 289
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=59.60 E-value=45 Score=28.08 Aligned_cols=58 Identities=9% Similarity=0.170 Sum_probs=35.1
Q ss_pred HHHHHHhhhcCCCEEEEEeCCC--hhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 71 LEESVKKTVSENPVVVYSKTWC--SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 71 ~~~~v~~~i~~~~VvvYsks~C--PyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
+.+.+++. . ++++|.+.... ++..+++..|++.|+++.+.++..+ +..+.+.+..+..
T Consensus 14 l~~~~~~~-~-~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~-p~~~~v~~~~~~~ 73 (351)
T cd08170 14 LGEYLARL-G-KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGE-CTRAEIERLAEIA 73 (351)
T ss_pred HHHHHHHh-C-CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCc-CCHHHHHHHHHHH
Confidence 33444444 2 45555553322 7788889999999998875566654 4445555554443
No 290
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=59.10 E-value=38 Score=25.45 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=33.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeee-EEEEC
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP-NVFIG 143 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP-~VFI~ 143 (144)
+.+++-+....=..+++++++.+++|..+..|.. + + +.+..|...+| +++||
T Consensus 93 ~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~---~-~----~~~~~~v~~~P~~~~id 145 (173)
T TIGR00385 93 LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPN---G-K----LGLDLGVYGAPETFLVD 145 (173)
T ss_pred CEEEEEECCCChHHHHHHHHHcCCCCceEEECCC---C-c----hHHhcCCeeCCeEEEEc
Confidence 4455554444445667899999999887777763 1 2 23445778899 56664
No 291
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=58.60 E-value=49 Score=28.25 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=32.5
Q ss_pred CCEEEEEeC----CChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKT----WCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks----~CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
++++|.+.. ..++..+++..|++.|+++.+++ +..+ +.-+.+++....
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~-p~~~~v~~~~~~ 78 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPN-PTTTTVMEGAAL 78 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCC-CCHHHHHHHHHH
Confidence 456655543 57889999999999999987663 5543 444555555443
No 292
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=58.60 E-value=7.6 Score=32.31 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=14.9
Q ss_pred CEEEEEeCCChhHHHHHHHH
Q 032250 83 PVVVYSKTWCSYSSEVKLLF 102 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL 102 (144)
.|+..++.|||||...+-.|
T Consensus 61 ~v~~igw~gCP~~A~~sW~L 80 (249)
T PF06053_consen 61 EVIFIGWEGCPYCAAESWAL 80 (249)
T ss_pred EEEEEecccCccchhhHHHH
Confidence 35566778999999887544
No 293
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=58.35 E-value=15 Score=32.73 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=23.1
Q ss_pred HHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhc
Q 032250 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 70 ~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~ 105 (144)
++++.+.++-+.-.+++|.. .|++|.+.+++|++.
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 9 QLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEI 43 (515)
T ss_pred HHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHH
Confidence 34444544333334555655 799999999999876
No 294
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=57.69 E-value=52 Score=28.22 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=31.5
Q ss_pred CCEEEEEeC----CChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKT----WCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks----~CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
.+++|.+.+ .++...+++..|++.|+++.+++ +..+ ++.+.+++....
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~-p~~~~v~~~~~~ 79 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPN-PTVDQVDEAAKL 79 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCC-CCHHHHHHHHHH
Confidence 356555543 37888999999999999887775 4433 344555555444
No 295
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=56.89 E-value=31 Score=25.59 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=27.2
Q ss_pred CChhHH-----------HHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 91 WCSYSS-----------EVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 91 ~CPyC~-----------rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.|+-|. +.+..|+.+|++..+.++.-. + .++ ++. .-..|.|.|||
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~--~-~~~----~~~--~~~S~~I~inG 69 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELD--E-EEF----ARQ--PLESPTIRING 69 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECC--h-HHH----hhc--ccCCCeeeECC
Confidence 788887 446667788987555544332 0 122 221 15778888886
No 296
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=54.91 E-value=38 Score=26.21 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=21.5
Q ss_pred CCEEEEEe--CCChhHHHHH-------HHHHhcCCCcEEEEecCC
Q 032250 82 NPVVVYSK--TWCSYSSEVK-------LLFKRLGVEPLVIELDEM 117 (144)
Q Consensus 82 ~~VvvYsk--s~CPyC~rAK-------~lL~e~gv~y~~vdld~~ 117 (144)
+.+++|.. .||+.|.... +-|++.|+++-.+.+|..
T Consensus 37 k~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 37 KWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred CEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 34555555 5788888543 333455777777776653
No 297
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.76 E-value=21 Score=29.38 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=28.1
Q ss_pred CEEEEEeCCChhHHHHH----HHHHhcCC----CcEE--EEecCC-CCCcHHHHHHHHHhcC
Q 032250 83 PVVVYSKTWCSYSSEVK----LLFKRLGV----EPLV--IELDEM-GPQGPQLQKLLERLTG 133 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK----~lL~e~gv----~y~~--vdld~~-~~d~~eiqe~L~~~~G 133 (144)
+|.+|+-.-||+|---+ +.+.+.+- ++.+ ++++.. .+.+...++.|++.+|
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g 68 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYG 68 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhC
Confidence 57788888899997544 44455552 2211 122221 1123346677777666
No 298
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=54.71 E-value=64 Score=27.31 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=28.3
Q ss_pred ChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHHh
Q 032250 92 CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 92 CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~~ 131 (144)
.++..+++..|++.|+++.+++ +..+ ++.+.+++.+.+.
T Consensus 37 ~~~~~~v~~~L~~~~~~~~~~~~~~~~-p~~~~v~~~~~~~ 76 (370)
T cd08551 37 TGVLDKVIDSLKEAGIEVVIFDGVEPN-PTLSNVDAAVAAY 76 (370)
T ss_pred CccHHHHHHHHHHcCCeEEEECCCCCC-CCHHHHHHHHHHH
Confidence 5889999999999999887665 5443 4556666666554
No 299
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=53.99 E-value=20 Score=25.47 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.2
Q ss_pred CEEEEEeCCChhHHHH
Q 032250 83 PVVVYSKTWCSYSSEV 98 (144)
Q Consensus 83 ~VvvYsks~CPyC~rA 98 (144)
+|.||..+-||+|++-
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5889999999999973
No 300
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.76 E-value=24 Score=25.82 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCcEEEEecCCCCCcHHHH-----HHHHHhcCCCeeeEEEEC
Q 032250 97 EVKLLFKRLGVEPLVIELDEMGPQGPQLQ-----KLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 97 rAK~lL~e~gv~y~~vdld~~~~d~~eiq-----e~L~~~~G~~TVP~VFI~ 143 (144)
++..+|+..++.++.+|+...+ +....+ +..+-..|...-||||-+
T Consensus 23 evv~~Ld~~ki~fk~~di~~~e-~~~~~~~~~~~~e~r~~~GnplPPqifn~ 73 (108)
T KOG4023|consen 23 EVVRFLDANKIGFKEIDITAYE-EVRQWMDNNVPDEKRPLNGNPLPPQIFNG 73 (108)
T ss_pred hhhhhhhcccCCcceeeccchh-hhHHHHHhcCChhhcCCCCCCCCcccccC
Confidence 5567889899999999987652 222111 222234678888999865
No 301
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=53.23 E-value=74 Score=26.98 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=29.5
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
++++|.+.....+-.+++..|++.|+++.+++ +..+ ++-+.+++....
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-p~~~~v~~~~~~ 72 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPN-PDLEDLAAGIRL 72 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCC-cCHHHHHHHHHH
Confidence 45666665544455678889999898776664 4443 444455554433
No 302
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=53.14 E-value=17 Score=32.25 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=23.7
Q ss_pred HHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhc
Q 032250 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 70 ~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~ 105 (144)
++++.++++-+.-.+++|.. .|++|.+++++|++.
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 9 QLKQYLELLERPIELVASLD-DSEKSAELKELLEEI 43 (517)
T ss_pred HHHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHH
Confidence 34444444444444556665 799999999999976
No 303
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.11 E-value=55 Score=25.66 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEe
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIEL 114 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~-----gv~y~~vdl 114 (144)
...|++|.--.||||++...-+.+. ++.+..+++
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~ 123 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREF 123 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEe
Confidence 5578899999999997666555542 334555554
No 304
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=52.84 E-value=67 Score=27.11 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=27.9
Q ss_pred CCEEEEEeC--CChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKT--WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks--~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~ 130 (144)
.+++|.+.. +-.+..+++..|++.|+++..++.-..++..+.+.+....
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~ 73 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKN 73 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHH
Confidence 455555432 3345667888898889987766532222444445554443
No 305
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=52.76 E-value=36 Score=25.81 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=28.8
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecC
Q 032250 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 80 ~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~ 116 (144)
++.+|++|...+|..+.++-..|...|.+- +..++-
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~-V~~l~G 150 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSN-VYWYPD 150 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcc-eEEecC
Confidence 567899999999999999999999999752 334443
No 306
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.11 E-value=9.9 Score=28.49 Aligned_cols=21 Identities=10% Similarity=0.349 Sum_probs=17.2
Q ss_pred CEEEEEeCCChhHHHHHHHHH
Q 032250 83 PVVVYSKTWCSYSSEVKLLFK 103 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~ 103 (144)
+|.+|.-..||||-.+...|+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 478999999999997766655
No 307
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.07 E-value=75 Score=21.76 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=41.8
Q ss_pred HHHHhhhcCCCEEEEEeCCChh--HHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHH
Q 032250 73 ESVKKTVSENPVVVYSKTWCSY--SSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (144)
Q Consensus 73 ~~v~~~i~~~~VvvYsks~CPy--C~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~ 130 (144)
..+.+.+.+.++||+..+.+.+ +..+|+..++.++++....-.. ...+.++|.+
T Consensus 40 ~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~----~~~l~~~l~~ 95 (97)
T PF10087_consen 40 SRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRG----VSSLERALER 95 (97)
T ss_pred hHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCC----HHHHHHHHHh
Confidence 4688899999999999888766 5689999999999988775333 2466666654
No 308
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=50.52 E-value=71 Score=25.75 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=42.0
Q ss_pred hHHHHHHHhhhcCCCEEEEEeC-----CChhHHHHHHHHHhc------CCCcEEEEecCCCCCcHHHHHHHHHhcCCCee
Q 032250 69 SRLEESVKKTVSENPVVVYSKT-----WCSYSSEVKLLFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTV 137 (144)
Q Consensus 69 ~~~~~~v~~~i~~~~VvvYsks-----~CPyC~rAK~lL~e~------gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TV 137 (144)
+.-++.++++-..-.|.+|... .=++=.+++.+|+++ ++.++++|.+.. ....++.. +..|...+
T Consensus 14 ~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~---~~~~~~~~-~~~Gi~~~ 89 (271)
T PF09822_consen 14 DQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN---PSEAEEKA-KEYGIQPV 89 (271)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC---hHHHHHHH-HhcCCCcc
Confidence 3445666665555578888877 567778899999977 577888887653 23344433 33455443
Q ss_pred e
Q 032250 138 P 138 (144)
Q Consensus 138 P 138 (144)
+
T Consensus 90 ~ 90 (271)
T PF09822_consen 90 Q 90 (271)
T ss_pred c
Confidence 3
No 309
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=49.19 E-value=72 Score=27.26 Aligned_cols=49 Identities=8% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCEEEEEeCCC---hhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKTWC---SYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks~C---PyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~~ 131 (144)
++++|.+.... ++-.+++..|++.|+++.+++ +..+ +..+.+.+.....
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~-p~~~~v~~~~~~~ 81 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPN-PTITNVKDGLAVF 81 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCC-CCHHHHHHHHHHH
Confidence 45665554443 678889999999999887764 5443 4445555555443
No 310
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=49.13 E-value=13 Score=29.32 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=18.0
Q ss_pred CEEEEEeCCChhHHHHHHHHHhc
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~ 105 (144)
++++|..+.||||+++-..++..
T Consensus 121 ~~~~f~~~~~~~~~~a~~~~~~~ 143 (244)
T COG1651 121 REFPFLDPACPYCRRAAQAARCA 143 (244)
T ss_pred EEeecCCCCcHHHHHHHHHHHHh
Confidence 46788889999999887666643
No 311
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=48.95 E-value=76 Score=27.29 Aligned_cols=60 Identities=25% Similarity=0.243 Sum_probs=41.2
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCC-CCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG-PQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~-~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
..+.++|..+.+.||. .+...-+|+....|.+|++. -|.+++++.+.+......+|.++|
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vv 199 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVV 199 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeee
Confidence 3578899999999997 67788889988888888742 144677777776554556775544
No 312
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=48.92 E-value=87 Score=26.81 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=31.5
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~~ 131 (144)
++++|.+... .++..+++..|++.|+++.+++ +..+ +..+.+++.+...
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~-p~~~~v~~~~~~~ 81 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPN-PRDEEVMAGAELY 81 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCC-CCHHHHHHHHHHH
Confidence 4555555433 4678899999999999887765 5443 4445566655443
No 313
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.22 E-value=66 Score=27.84 Aligned_cols=60 Identities=7% Similarity=0.084 Sum_probs=38.8
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcC---CCeeeEEEEC
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTG---QHTVPNVFIG 143 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G---~~TVP~VFI~ 143 (144)
..+++|+-++|+--.-|+.+.+..+.++..++.... ...++++.+.+... ...--.||||
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--~~~~ir~ii~~~~~~~~~g~~~vL~ID 99 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--GVKDLREVIEEARQRRSAGRRTILFID 99 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--cHHHHHHHHHHHHHhhhcCCceEEEEe
Confidence 368899999999999999998888887777665432 23344544443311 1123456765
No 314
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=47.62 E-value=86 Score=26.85 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=31.0
Q ss_pred CCEEEEEeC----CChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKT----WCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks----~CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
++++|.+.+ .+++..+++..|++.|+++.+++ +..+ +.-+.+++.+..
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~-p~~~~v~~~~~~ 81 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPN-PRLETVREGIEL 81 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCC-CCHHHHHHHHHH
Confidence 456655543 36788999999999999877664 4443 344455555444
No 315
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=47.61 E-value=2.1e+02 Score=25.69 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=43.7
Q ss_pred cCCcchHHHHHHHhhhcC---CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHH
Q 032250 64 ASSYGSRLEESVKKTVSE---NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLL 128 (144)
Q Consensus 64 ~~~~~~~~~~~v~~~i~~---~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L 128 (144)
.+-+|..+.+++-..++. +++.+.+.++ =|.-+.|...|++.|++|+++|=-+.+|......+++
T Consensus 50 ~~rfG~gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~al 120 (465)
T KOG3857|consen 50 TSRFGKGVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAAL 120 (465)
T ss_pred hhhhcchhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHH
Confidence 355777777776666642 3566666654 6788999999999999999998444333333444444
No 316
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=47.19 E-value=41 Score=24.06 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=45.3
Q ss_pred cchHHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHH
Q 032250 67 YGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLE 129 (144)
Q Consensus 67 ~~~~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~ 129 (144)
..++..+.+.+.+......+|-.-.=..=.++.+.|+..|-+.-.-++++. +.+++++++.
T Consensus 40 I~d~~~~ev~~~L~~GssAl~~lv~~~~~d~v~~~l~~~gg~v~~t~ls~~--~e~~L~~al~ 100 (102)
T PF06897_consen 40 IDDEFIKEVGEALKPGSSALFLLVDEATEDKVDAALRKFGGKVLRTSLSEE--DEDELQEALD 100 (102)
T ss_pred CCHHHHHHHHhhcCCCceEEEEEeccCCHHHHHHHHHhcCCEEEeccCCHH--HHHHHHHHHh
Confidence 456677888889998887777776667778999999999976666677764 3455555554
No 317
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=46.90 E-value=13 Score=27.70 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCcEEEE--ecCCCCCcHHHHHHH--HHhcCCCeeeEEEECC
Q 032250 97 EVKLLFKRLGVEPLVIE--LDEMGPQGPQLQKLL--ERLTGQHTVPNVFIGK 144 (144)
Q Consensus 97 rAK~lL~e~gv~y~~vd--ld~~~~d~~eiqe~L--~~~~G~~TVP~VFI~G 144 (144)
..+.++++.|++.+.++ ++.. +-..++++.. .+..|...+|+++|||
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~~~~-~~~~~l~~~~~~a~~~gi~gvPtfvv~g 175 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAADDP-AVKAALRANTEEAIARGVFGVPTFVVDG 175 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCH-HHHHHHHHHHHHHHHcCCCcCCeEEECC
Confidence 35678888888654322 2211 0012222222 2235899999999987
No 318
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=46.83 E-value=8.1 Score=35.94 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=41.9
Q ss_pred HHHHhhhc---CCCEEEEEeCCChhHHHHHHHHHhcCC---------CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 73 ESVKKTVS---ENPVVVYSKTWCSYSSEVKLLFKRLGV---------EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 73 ~~v~~~i~---~~~VvvYsks~CPyC~rAK~lL~e~gv---------~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
+.++..+- +..+|=|..+||+.|++-.-.+++... ....||+-+. .-..+.+-.+.+.+|++
T Consensus 47 ~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~------~N~~lCRef~V~~~Ptl 120 (606)
T KOG1731|consen 47 DTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE------ENVKLCREFSVSGYPTL 120 (606)
T ss_pred hhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch------hhhhhHhhcCCCCCcee
Confidence 44444443 235777778999999988777665432 2345555442 34556787899999998
Q ss_pred EE
Q 032250 141 FI 142 (144)
Q Consensus 141 FI 142 (144)
..
T Consensus 121 ry 122 (606)
T KOG1731|consen 121 RY 122 (606)
T ss_pred ee
Confidence 74
No 319
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=46.70 E-value=1.3e+02 Score=24.29 Aligned_cols=74 Identities=12% Similarity=0.263 Sum_probs=49.6
Q ss_pred cCCcchHHHHHHHhhhcCC--CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEE
Q 032250 64 ASSYGSRLEESVKKTVSEN--PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (144)
Q Consensus 64 ~~~~~~~~~~~v~~~i~~~--~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VF 141 (144)
..++-.++...+++...++ .++++....-+.+.++.+.|.+++++=-++- ... .+.++++...+ . .+|.|+
T Consensus 12 ~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~-s~~-~~~~~l~~~~~----~-~iPvV~ 84 (279)
T PF00532_consen 12 SNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILA-SSE-NDDEELRRLIK----S-GIPVVL 84 (279)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEE-SSS-CTCHHHHHHHH----T-TSEEEE
T ss_pred CCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEe-ccc-CChHHHHHHHH----c-CCCEEE
Confidence 4456677777777777654 5778888888999888888999998865555 222 23345543332 2 678888
Q ss_pred ECC
Q 032250 142 IGK 144 (144)
Q Consensus 142 I~G 144 (144)
+|.
T Consensus 85 ~~~ 87 (279)
T PF00532_consen 85 IDR 87 (279)
T ss_dssp ESS
T ss_pred EEe
Confidence 763
No 320
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=46.65 E-value=1e+02 Score=26.36 Aligned_cols=48 Identities=10% Similarity=0.200 Sum_probs=30.9
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
++++|.+... .++..+++..|++.|+++.+++ +..+ +..+.+.+....
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~-p~~~~v~~~~~~ 82 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPN-PTIEVVKEGVEV 82 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCC-cCHHHHHHHHHH
Confidence 4555554432 5788899999999999888774 4443 344455544433
No 321
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=46.50 E-value=8.2 Score=32.16 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=31.6
Q ss_pred HHHhhhcCCCEEEEEeCCChhHHHHHHHHHh-------cCCCcEEEEecCC
Q 032250 74 SVKKTVSENPVVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDEM 117 (144)
Q Consensus 74 ~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e-------~gv~y~~vdld~~ 117 (144)
--.++....-.+.|..+|||.|...+..|.. ++|..-++|+...
T Consensus 33 nw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n 83 (248)
T KOG0913|consen 33 NWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN 83 (248)
T ss_pred chhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec
Confidence 3344455555788999999999999988874 3556667776653
No 322
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=46.13 E-value=1e+02 Score=26.77 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=31.5
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHH
Q 032250 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLE 129 (144)
Q Consensus 82 ~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~ 129 (144)
++++|++... .++..+++..|++.|+++.+++ +..+ +..+.+++..+
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~-P~~~~v~~~~~ 100 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGE-PCITDVCAAVA 100 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCC-cCHHHHHHHHH
Confidence 4666666543 6778999999999999988774 4432 44455555543
No 323
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=45.30 E-value=1.4e+02 Score=26.22 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=44.5
Q ss_pred cchHHHHHHHhhhcC---CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 67 YGSRLEESVKKTVSE---NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 67 ~~~~~~~~v~~~i~~---~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
+|....+.+.+.+.. +++.|.+.+. .++=.++.+.|++.|++|.+++=-+.+|....+.+..+.+
T Consensus 12 fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~ 82 (377)
T COG1454 12 FGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVA 82 (377)
T ss_pred ecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHH
Confidence 344445666666664 6788888765 8899999999999999998886333335555566555443
No 324
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=45.26 E-value=96 Score=26.55 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=30.1
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
++++|.+... .++..+++..|++.|+++.+++ +..+ +.-+.+++....
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~-p~~~~v~~~~~~ 81 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPN-PTITVVKAGVAA 81 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCC-cCHHHHHHHHHH
Confidence 3555555443 4577889999999999887774 4432 344555555443
No 325
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=44.22 E-value=15 Score=28.69 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=16.4
Q ss_pred CCCEEEEEeCCChhHHHHHH
Q 032250 81 ENPVVVYSKTWCSYSSEVKL 100 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~ 100 (144)
...|+-|..-.||+|.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 34599999999999998654
No 326
>PRK04195 replication factor C large subunit; Provisional
Probab=44.19 E-value=1.6e+02 Score=26.15 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=29.3
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecC
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~ 116 (144)
...+++|+-++|+--.-|+.+.++.|.++.+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 456999999999999999999999987665555443
No 327
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=43.60 E-value=24 Score=25.41 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=11.4
Q ss_pred hcCCCeeeEEEECC
Q 032250 131 LTGQHTVPNVFIGK 144 (144)
Q Consensus 131 ~~G~~TVP~VFI~G 144 (144)
..|...+|++||||
T Consensus 131 ~~~i~~tPt~~inG 144 (162)
T PF13462_consen 131 QLGITGTPTFFING 144 (162)
T ss_dssp HHT-SSSSEEEETT
T ss_pred HcCCccccEEEECC
Confidence 45889999999998
No 328
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=43.47 E-value=1.1e+02 Score=26.08 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=33.9
Q ss_pred HHHHhhhcCCCEEEE-Ee---CCChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 73 ESVKKTVSENPVVVY-SK---TWCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 73 ~~v~~~i~~~~VvvY-sk---s~CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
+.+.+... ++++|. +. ...++-.+++..|++.|+++.+++ +..+ +.-+.+++....
T Consensus 16 ~~l~~~~~-~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~-p~~~~v~~~~~~ 76 (375)
T cd08179 16 EYLKTLKG-KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPD-PSVETVLKGAEA 76 (375)
T ss_pred HHHHHhcC-CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCC-cCHHHHHHHHHH
Confidence 34444433 444444 43 237888899999999999887765 4443 455555555544
No 329
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=43.20 E-value=1.2e+02 Score=25.90 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=29.8
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
++++|.+... .+...+++..|++.|+++.+++ +..+ +..+.+++....
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~-p~~~~v~~~~~~ 78 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPD-PTIENVEAGLAL 78 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCC-cCHHHHHHHHHH
Confidence 4666665543 3456788889999999877664 4433 444445555444
No 330
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=43.05 E-value=76 Score=20.70 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=28.1
Q ss_pred HHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCC
Q 032250 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (144)
Q Consensus 70 ~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~ 108 (144)
++.+.+..+-.+.+|++|.. .+..+.++-..|++.|.+
T Consensus 45 ~~~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 45 SLDDWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 44555555556778999987 777788888899999875
No 331
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=41.84 E-value=1.3e+02 Score=25.69 Aligned_cols=63 Identities=24% Similarity=0.245 Sum_probs=47.6
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHhcCCC-cEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVE-PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 80 ~~~~VvvYsks~CPyC~rAK~lL~e~gv~-y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
.-+.|.+++..+-+-+--+|.++.+.+-+ ...|||+++ |-..+...+.++.+...-=.||+|+
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~--dl~~Lp~l~~~Lr~~~~kFIlFcDD 147 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE--DLATLPDLVELLRARPEKFILFCDD 147 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH--HHhhHHHHHHHHhcCCceEEEEecC
Confidence 35679999999999999999999987554 468888875 5566777777776655555667664
No 332
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=41.13 E-value=1.5e+02 Score=24.48 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=27.6
Q ss_pred CCEEEEEeCCC--hhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKTWC--SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks~C--PyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
++++|.+.... ++-.+++..|++. +++.+++.-..+++-+.+++.....
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~ 74 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERA 74 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHH
Confidence 34555554333 5666788888877 7776665332224445555554443
No 333
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=40.93 E-value=68 Score=27.69 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=33.2
Q ss_pred HHHHhhhcCC---CEEEEEeCCChhHH----HHHHHHHhcCCCcEEEEecCC
Q 032250 73 ESVKKTVSEN---PVVVYSKTWCSYSS----EVKLLFKRLGVEPLVIELDEM 117 (144)
Q Consensus 73 ~~v~~~i~~~---~VvvYsks~CPyC~----rAK~lL~e~gv~y~~vdld~~ 117 (144)
+.+.+++++. .|+.+....|..=. .+|+.|++.|+++-.+|++.+
T Consensus 311 ~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~~ 362 (380)
T TIGR02263 311 KYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAEN 362 (380)
T ss_pred HHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecCc
Confidence 4555555443 47788877786644 668889999999999998874
No 334
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=40.81 E-value=1.1e+02 Score=24.71 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=36.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
.+++|+-++|+--.-++.+..+.+.++........ .....+.+.+... ..-..+|||
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~-~~~~~l~~~l~~~---~~~~vl~iD 88 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL-EKPGDLAAILTNL---EEGDVLFID 88 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchh-cCchhHHHHHHhc---ccCCEEEEe
Confidence 48999999999999999999999887766654322 1122343444333 223466665
No 335
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=40.67 E-value=90 Score=23.20 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=39.8
Q ss_pred chHHHHHHHhhhcCCCE-EEEEe---CC-ChhHHHHHHHHHhcCCCc-EEEEecCCCCCcHHHHHHHHHh
Q 032250 68 GSRLEESVKKTVSENPV-VVYSK---TW-CSYSSEVKLLFKRLGVEP-LVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 68 ~~~~~~~v~~~i~~~~V-vvYsk---s~-CPyC~rAK~lL~e~gv~y-~~vdld~~~~d~~eiqe~L~~~ 131 (144)
...+.++++..-....+ -|++. .| +-||..++.+-++++++. ..+|+.-.++|-+.+++.++++
T Consensus 59 P~~v~~Fl~~~~n~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~vp~l~k~El~gt~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 59 PKQVIRFLNDEHNRKLLRGVIASGNRNFGDAFALAGDVISAKCQVPLLYRFELSGTNEDVENVRKGVEEF 128 (134)
T ss_pred cHHHHHHHhccccCCcEEEEEEecCchHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 35566777664444432 23332 22 679999999999999874 5667765433445556666665
No 336
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=40.56 E-value=26 Score=26.11 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=20.7
Q ss_pred EEEEEeCCChhHHHHHHHHH----hcCCCcEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFK----RLGVEPLVI 112 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~----e~gv~y~~v 112 (144)
|.+|+-.-||||--++..|+ +.+++++..
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~ 33 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYR 33 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEe
Confidence 45889999999998776666 445554443
No 337
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=40.20 E-value=2e+02 Score=24.21 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=28.9
Q ss_pred CCEEEEEeCCC--hhHHHHHHHHHhcCCCcEEEEecCCC--CCcHHHHHHHHHh
Q 032250 82 NPVVVYSKTWC--SYSSEVKLLFKRLGVEPLVIELDEMG--PQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks~C--PyC~rAK~lL~e~gv~y~~vdld~~~--~d~~eiqe~L~~~ 131 (144)
++++|.+.+.- .+-.+++..|++.|+++..++....+ ++-+.+.+.+.+.
T Consensus 24 ~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~ 77 (348)
T cd08175 24 KKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKEL 77 (348)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHh
Confidence 45666654321 13467889999999988766644332 3344454544443
No 338
>PRK08118 topology modulation protein; Reviewed
Probab=39.87 E-value=1.1e+02 Score=23.03 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=28.0
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcCCCcEEEE
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE 113 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vd 113 (144)
.+|+|.+-++|+-..-|+.+-+..|+++...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 57999999999999999999999998865554
No 339
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=39.71 E-value=1.7e+02 Score=25.42 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=30.5
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
.+++|.+... .+...++...|++.|+++.+++ +..+ +.-+.+.+..+.
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~-p~~~~v~~~~~~ 75 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVE-PTDESFKDAIAF 75 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCC-cCHHHHHHHHHH
Confidence 4566555443 4567888899999999988764 4443 444555555443
No 340
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=39.19 E-value=1.6e+02 Score=24.91 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=30.4
Q ss_pred CCEEEEEeC----CChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKT----WCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks----~CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
++++|.+.+ ..+...+++..|++.|+++.+++ +..+ +..+.+.+....
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~-p~~~~v~~~~~~ 78 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEEN-PSLETIMEAVEI 78 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCC-cCHHHHHHHHHH
Confidence 455555433 25677889999999999887764 5543 444555555443
No 341
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=38.94 E-value=58 Score=27.54 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=35.8
Q ss_pred HHHHHHHhhhcCCCEEEEEeCC--ChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHHh
Q 032250 70 RLEESVKKTVSENPVVVYSKTW--CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 70 ~~~~~v~~~i~~~~VvvYsks~--CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~~ 131 (144)
++.+.+++. . +.++|..+.+ .+...+++..|++.|+++..++ +..+ ++.+.+++.....
T Consensus 13 ~l~~~l~~~-g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~-p~~~~v~~~~~~~ 74 (366)
T PF00465_consen 13 ELGEELKRL-G-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPN-PTLEDVDEAAEQA 74 (366)
T ss_dssp GHHHHHHCT-T-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS--BHHHHHHHHHHH
T ss_pred HHHHHHHhc-C-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCC-CcHHHHHHHHHHH
Confidence 334445544 2 3344444422 5567888889999999987777 6554 5566666665443
No 342
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=38.85 E-value=57 Score=25.08 Aligned_cols=43 Identities=9% Similarity=0.073 Sum_probs=29.4
Q ss_pred eCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhc
Q 032250 89 KTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT 132 (144)
Q Consensus 89 ks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~ 132 (144)
++.=+++++++..|++.|++|+..-+.-+. ..+++.+.++++.
T Consensus 10 ~SD~~~~~~a~~~L~~~gi~~~~~V~saHR-~p~~l~~~~~~~~ 52 (150)
T PF00731_consen 10 TSDLPIAEEAAKTLEEFGIPYEVRVASAHR-TPERLLEFVKEYE 52 (150)
T ss_dssp GGGHHHHHHHHHHHHHTT-EEEEEE--TTT-SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeccC-CHHHHHHHHHHhc
Confidence 356789999999999999999876666542 4455666666653
No 343
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=38.72 E-value=1.6e+02 Score=24.80 Aligned_cols=37 Identities=11% Similarity=-0.042 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHH
Q 032250 93 SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (144)
Q Consensus 93 PyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~ 130 (144)
.+-.+++..|++.|+.+.+...+.. +..+.+.+....
T Consensus 36 ~~~~~v~~~l~~~~i~~~~~~~~~~-p~~~~v~~~~~~ 72 (349)
T cd08550 36 KSRPRFEAALAKSIIVVDVIVFGGE-CSTEEVVKALCG 72 (349)
T ss_pred HHHHHHHHHHHhcCCeeEEEEcCCC-CCHHHHHHHHHH
Confidence 3456777888888876555444432 333444444433
No 344
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=38.44 E-value=1.1e+02 Score=26.04 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=31.6
Q ss_pred eCCChhHHHHHHHHHhcC-----CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 89 KTWCSYSSEVKLLFKRLG-----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 89 ks~CPyC~rAK~lL~e~g-----v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
--+|+.|.+++.+|+.+. +.|.-+||.. +.+++...++. ...+|.|-|
T Consensus 82 ELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~-----~~L~~a~~~L~-~~~~p~l~v 134 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALERQKKSVDYYALDVSR-----SELQRTLAELP-LGNFSHVRC 134 (319)
T ss_pred EECCCchHHHHHHHHHHHhcCCCceEEEEECCH-----HHHHHHHHhhh-hccCCCeEE
Confidence 457999999999998663 3455555554 56777777663 234565544
No 345
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=38.39 E-value=1e+02 Score=21.87 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=27.7
Q ss_pred hcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecC
Q 032250 79 VSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 79 i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~ 116 (144)
-...+|++|.......+.++-.+|+.+|.+ ...++-
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~G 119 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLEG 119 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeCC
Confidence 355689999976677788888999999984 566664
No 346
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.31 E-value=15 Score=31.38 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=10.4
Q ss_pred EEEEEeCCChhHHHH
Q 032250 84 VVVYSKTWCSYSSEV 98 (144)
Q Consensus 84 VvvYsks~CPyC~rA 98 (144)
+++=-|+.||||++-
T Consensus 265 civGKkqtCPYCKek 279 (328)
T KOG1734|consen 265 CIVGKKQTCPYCKEK 279 (328)
T ss_pred eeecCCCCCchHHHH
Confidence 344445789999964
No 347
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=37.08 E-value=24 Score=26.61 Aligned_cols=20 Identities=15% Similarity=0.296 Sum_probs=15.6
Q ss_pred EEEEEeCCChhHHHHHHHHH
Q 032250 84 VVVYSKTWCSYSSEVKLLFK 103 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~ 103 (144)
|.+|+-.-||||--+...|+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 45899999999996665554
No 348
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=36.91 E-value=43 Score=24.29 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=29.5
Q ss_pred HHHHHHhhhcCCCEEEEEeCCChhHHHH-HHHHHhcCCCcEEEEecC
Q 032250 71 LEESVKKTVSENPVVVYSKTWCSYSSEV-KLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 71 ~~~~v~~~i~~~~VvvYsks~CPyC~rA-K~lL~e~gv~y~~vdld~ 116 (144)
+.+.+.++..+- -+|. |--|.+| +++|.+.|++.+.+.|..
T Consensus 5 ~~Q~I~~I~~~f--~~~q---C~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 5 VRQQIGKIASRF--KIFQ---CVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred HHHHHHHhhccc--Ccee---hHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 334444444333 3554 9999976 699999999999999987
No 349
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=36.88 E-value=1.6e+02 Score=22.82 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=35.2
Q ss_pred HHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCC------------cEEEEecCCCCCcHHHHHHHHHhcCCCee
Q 032250 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVE------------PLVIELDEMGPQGPQLQKLLERLTGQHTV 137 (144)
Q Consensus 70 ~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~------------y~~vdld~~~~d~~eiqe~L~~~~G~~TV 137 (144)
++.+.++++-. ..+.|-..+.+..=..|+++|+.+++. |...++-.. .....+ +.+.+.+|..--
T Consensus 49 dv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf-~~i~~~tgI~y~ 125 (169)
T PF12689_consen 49 DVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-SKTTHF-RRIHRKTGIPYE 125 (169)
T ss_dssp THHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS--HHHHH-HHHHHHH---GG
T ss_pred CHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC-chHHHH-HHHHHhcCCChh
Confidence 44555555544 444444444444449999999998887 445566553 112223 334445565555
Q ss_pred eEEEECC
Q 032250 138 PNVFIGK 144 (144)
Q Consensus 138 P~VFI~G 144 (144)
=++|+|+
T Consensus 126 eMlFFDD 132 (169)
T PF12689_consen 126 EMLFFDD 132 (169)
T ss_dssp GEEEEES
T ss_pred HEEEecC
Confidence 5666653
No 350
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=36.82 E-value=1.6e+02 Score=25.41 Aligned_cols=48 Identities=6% Similarity=0.131 Sum_probs=30.4
Q ss_pred CCEEEEEeC---CChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKT---WCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks---~CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~ 130 (144)
++++|.+.. ..+.-.+++..|++.|+.+.+++ +..+ +.-+.+++....
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~n-p~~~~v~~~~~~ 83 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPN-PTTENVAAGLKL 83 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCC-cCHHHHHHHHHH
Confidence 355555433 36788899999999999876664 4432 444555555433
No 351
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=36.58 E-value=55 Score=24.58 Aligned_cols=43 Identities=9% Similarity=0.206 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHH----hcC---CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 92 CSYSSEVKLLFK----RLG---VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 92 CPyC~rAK~lL~----e~g---v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
+|-+..+--+|+ +.+ +.+-.+|+|+. ..+.+.+|..++|++++
T Consensus 48 ~~E~~D~avvleELa~e~~~~~v~~akVDiD~~--------~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 48 TPEVSDNPVMIGELLREFPDYTWQVAIADLEQS--------EAIGDRFGVFRFPATLV 97 (132)
T ss_pred CCccccHHHHHHHHHHHhcCCceEEEEEECCCC--------HHHHHHcCCccCCEEEE
Confidence 666665555554 333 33555555552 34566679999999875
No 352
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=36.50 E-value=34 Score=21.68 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=17.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecC
Q 032250 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 85 vvYsks~CPyC~rAK~lL~e~gv~y~~vdld~ 116 (144)
.+|+...=--+..++.+|++.||++...+-..
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 45565555567788999999999887765544
No 353
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=36.09 E-value=57 Score=23.09 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=28.6
Q ss_pred CCCEEEEEe-CCChhHHHHHHHHHhcCCCcEEEEecCC
Q 032250 81 ENPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (144)
Q Consensus 81 ~~~VvvYsk-s~CPyC~rAK~lL~e~gv~y~~vdld~~ 117 (144)
..+|+|.+. +....|.+|.+.|++.|++...+++...
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i 46 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTI 46 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEE
Confidence 345666655 5688999999999999999888886433
No 354
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=35.85 E-value=1.9e+02 Score=24.53 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=28.3
Q ss_pred CCEEEEEeCCC--hhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHH
Q 032250 82 NPVVVYSKTWC--SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (144)
Q Consensus 82 ~~VvvYsks~C--PyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~ 130 (144)
.+++|.+.... .+..++...|++.|+++.+.++..+ +..+.+.+....
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~e-p~~~~v~~~~~~ 79 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGE-CSDNEIDRLVAI 79 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CCHHHHHHHHHH
Confidence 45655554322 2556778888888888755566543 444555554433
No 355
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=35.05 E-value=87 Score=22.66 Aligned_cols=31 Identities=13% Similarity=0.331 Sum_probs=24.6
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhcCCCcEEE
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVI 112 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~v 112 (144)
..+|++.-+-.|+|-.+++. .++.|...-++
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII 64 (118)
T cd02127 34 NGNIALIERGGCSFLTKAIN-AQKAGALAVII 64 (118)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEE
Confidence 46788888989999999886 67778775555
No 356
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=34.76 E-value=78 Score=26.10 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=39.5
Q ss_pred HHHHHhhhcCC-CEEEEE------eCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHH
Q 032250 72 EESVKKTVSEN-PVVVYS------KTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (144)
Q Consensus 72 ~~~v~~~i~~~-~VvvYs------ks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~ 130 (144)
..++.+-+..+ +=+.|- .++-+|-.++++.|+++|..+..+++-+. +.++++..|.+
T Consensus 21 ~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~--~~~~Ie~~l~~ 84 (224)
T COG3340 21 LPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP--PLAAIENKLMK 84 (224)
T ss_pred hHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC--CHHHHHHhhhh
Confidence 35666655543 333332 25688999999999999999999998874 45566655544
No 357
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=34.74 E-value=1.3e+02 Score=19.63 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecC
Q 032250 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 71 ~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~ 116 (144)
+.+.+...-.+.+|++|... ...+..+-..|++.|. ++..++-
T Consensus 41 ~~~~~~~~~~~~~vvl~c~~-g~~a~~~a~~L~~~G~--~v~~l~G 83 (90)
T cd01524 41 LRDRLNELPKDKEIIVYCAV-GLRGYIAARILTQNGF--KVKNLDG 83 (90)
T ss_pred HHHHHHhcCCCCcEEEEcCC-ChhHHHHHHHHHHCCC--CEEEecC
Confidence 44445444445688888654 3456666678889988 4555543
No 358
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=34.48 E-value=2.2e+02 Score=24.39 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE
Q 032250 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE 113 (144)
Q Consensus 82 ~~VvvYsks~---CPyC~rAK~lL~e~gv~y~~vd 113 (144)
.+++|.+... .++-.+++..|++.|+++.+++
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~ 57 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFD 57 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEEC
Confidence 4566555443 5777889999999999887765
No 359
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=34.23 E-value=1e+02 Score=23.43 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=31.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeE-EEEC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPN-VFIG 143 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~-VFI~ 143 (144)
.+.+++-..--.=..+++++++++++|..+-.|.. + ++ .+..|...+|+ ++||
T Consensus 97 ~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~---~-~~----~~~~gv~~~P~t~vid 150 (185)
T PRK15412 97 GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGD---G-ML----GLDLGVYGAPETFLID 150 (185)
T ss_pred CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCC---c-cH----HHhcCCCcCCeEEEEC
Confidence 34444443322225678899999999876555653 1 22 33457888995 5554
No 360
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.93 E-value=38 Score=23.16 Aligned_cols=21 Identities=5% Similarity=0.188 Sum_probs=18.2
Q ss_pred ChhHHHHHHHHHhcCCCcEEE
Q 032250 92 CSYSSEVKLLFKRLGVEPLVI 112 (144)
Q Consensus 92 CPyC~rAK~lL~e~gv~y~~v 112 (144)
=+||+++.++|+++|+.|+-+
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeee
Confidence 579999999999999988644
No 361
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=33.38 E-value=46 Score=25.93 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCcEEEEe--cCCCCCcHHHH--HHHHHhcCCCeeeEEEECC
Q 032250 96 SEVKLLFKRLGVEPLVIEL--DEMGPQGPQLQ--KLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 96 ~rAK~lL~e~gv~y~~vdl--d~~~~d~~eiq--e~L~~~~G~~TVP~VFI~G 144 (144)
...++++++.|++-+.++- +.. .....++ ..+.+..|...+|+++|||
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~-~~~~~v~~~~~~a~~~gI~gtPtfiInG 175 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSF-VVKSLVAQQEKAAADLQLRGVPAMFVNG 175 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCh-HHHHHHHHHHHHHHHcCCCCCCEEEECC
Confidence 3566778888886443321 111 0011111 2233446899999999997
No 362
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=32.98 E-value=1.4e+02 Score=25.67 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=33.9
Q ss_pred HHHHhhhcCC---CEEEEEeCCChhHH----HHHHHHHhcCCCcEEEEecCC
Q 032250 73 ESVKKTVSEN---PVVVYSKTWCSYSS----EVKLLFKRLGVEPLVIELDEM 117 (144)
Q Consensus 73 ~~v~~~i~~~---~VvvYsks~CPyC~----rAK~lL~e~gv~y~~vdld~~ 117 (144)
+.+.+++++. .|+.++...|..-. .+|+.|++.|+++-.+|.|-.
T Consensus 303 ~~i~~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~ 354 (377)
T TIGR03190 303 DHVLGLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDIT 354 (377)
T ss_pred HHHHHHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCC
Confidence 4455555443 48888888887655 578889999999999999876
No 363
>PF07014 Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro: IPR009743 This entry represents the C terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance [].
Probab=32.40 E-value=74 Score=26.53 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=29.4
Q ss_pred CCChhHHHHHHHHH--------hcCCC-cEEEEecCCCCCcHHHHHHHHHhc
Q 032250 90 TWCSYSSEVKLLFK--------RLGVE-PLVIELDEMGPQGPQLQKLLERLT 132 (144)
Q Consensus 90 s~CPyC~rAK~lL~--------e~gv~-y~~vdld~~~~d~~eiqe~L~~~~ 132 (144)
+.++||-|-|.+.+ .+.++ .-.||+|.. .|+.+||+..+++
T Consensus 128 ~~~afCfRS~~Lvevtk~ckdLrhkVP~il~VEvDP~--GGPriqEAaMkLy 177 (261)
T PF07014_consen 128 ETAAFCFRSKELVEVTKMCKDLRHKVPEILGVEVDPK--GGPRIQEAAMKLY 177 (261)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHhCChheEeeeCCC--CCchHHHHHHHHH
Confidence 57999999887775 22343 567778876 5889998876654
No 364
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=32.38 E-value=3e+02 Score=23.03 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=26.9
Q ss_pred CCEEEEEeCCC--hhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKTWC--SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks~C--PyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
.++++.+.... ++..+++..|++.| .+..+ +..+ ++.+.+++.+.+.
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~-~~~~-~~~~~v~~~~~~~ 74 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVV-IVED-ATYEEVEKVESSA 74 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEE-EeCC-CCHHHHHHHHHHh
Confidence 45655554332 56778888888888 76555 3332 3445555544443
No 365
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=32.08 E-value=1.9e+02 Score=20.68 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=37.7
Q ss_pred HHHHHHHhhhcC---CCEEEEEeCCCh----hHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCe
Q 032250 70 RLEESVKKTVSE---NPVVVYSKTWCS----YSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHT 136 (144)
Q Consensus 70 ~~~~~v~~~i~~---~~VvvYsks~CP----yC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~T 136 (144)
++.+.++.+-.. .++.++.-..-| |=+..++..++.|+.++.+.+.+. ...+++.+.+.++..-..
T Consensus 15 ~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~el~~~i~~lN~D~~ 87 (117)
T PF00763_consen 15 ELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPED-ISEEELLELIEKLNEDPS 87 (117)
T ss_dssp HHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TT-SSHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCC-cCHHHHHHHHHHHhCCCC
Confidence 344455554444 344444444334 455667888899999999999765 355667777777644333
No 366
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=31.90 E-value=84 Score=22.16 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=31.1
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~ 117 (144)
+|++++.++|+-..-++.+.+..+.++..+.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~ 35 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSD 35 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccc
Confidence 48999999999999999999999999999998874
No 367
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=31.76 E-value=1.3e+02 Score=21.41 Aligned_cols=31 Identities=13% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhcCCCcEEE
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVI 112 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~v 112 (144)
+.+|++..+..|++..+++. .++.|...-++
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~-A~~aGA~avIi 73 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKV-AAARGAVAVIV 73 (122)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEE
Confidence 66899999999999988875 66667765544
No 368
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=31.65 E-value=43 Score=22.90 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=24.6
Q ss_pred HHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCc
Q 032250 74 SVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEP 109 (144)
Q Consensus 74 ~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y 109 (144)
.+++.... ++..|..|+..+-..+.+++++.|.+|
T Consensus 88 ~l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 88 ILEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 33443334 777888888888889999999998876
No 369
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=31.05 E-value=1.8e+02 Score=20.84 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhc
Q 032250 96 SEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT 132 (144)
Q Consensus 96 ~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~ 132 (144)
..+.++|++.|.+.....+-.+ |.+++++.+.+..
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~D--d~~~I~~~l~~~~ 55 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVPD--DKEAIKEALREAL 55 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeCC--CHHHHHHHHHHHH
Confidence 3456677778876555554432 4566777766543
No 370
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=30.90 E-value=38 Score=32.92 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=36.0
Q ss_pred HHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCC
Q 032250 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134 (144)
Q Consensus 73 ~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~ 134 (144)
+.|...-.+....|+.+.|||.=.++- +|.+|-+|.. ...|+++.|.++.|.
T Consensus 1046 deV~~~k~~~sL~i~vRRW~Ps~~e~~--------pFQEV~Ld~~--~~~E~Re~LS~ISgI 1097 (1203)
T KOG4598|consen 1046 DEVMIGKPGESLPIMVRRWRPSTVEVN--------PFQEVLLDAN--AEVEFREALSKISGI 1097 (1203)
T ss_pred hhcccCCCCccchhhheeccccceecC--------CceeEEecCc--chHHHHHHHHHhcCC
Confidence 333334445568999999999643321 5888888875 346889998887663
No 371
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.69 E-value=95 Score=27.02 Aligned_cols=51 Identities=18% Similarity=0.467 Sum_probs=32.1
Q ss_pred EEEEEe----CCChhHHHHHHHHHhc------------C--CCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSK----TWCSYSSEVKLLFKRL------------G--VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsk----s~CPyC~rAK~lL~e~------------g--v~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
|++|+. ..|+-|+.+.+-++-. | +=|..||+|+. .+..+++ +..++|++++
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-------p~~Fq~l-~ln~~P~l~~ 132 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-------PQVFQQL-NLNNVPHLVL 132 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-------HHHHHHh-cccCCCeEEE
Confidence 677776 3599999887555411 1 12556677763 3333343 7789999886
No 372
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=30.68 E-value=2.8e+02 Score=22.09 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=39.7
Q ss_pred CCcchHHHHHHHhhhcC-CCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHh
Q 032250 65 SSYGSRLEESVKKTVSE-NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 65 ~~~~~~~~~~v~~~i~~-~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~ 131 (144)
.+...++++++.++-.. -+++|.+- --=.|+..+.+.+|++|-.-=-.. -+..++++++++
T Consensus 45 ~~~tpe~~~W~~e~k~~gi~v~vvSN---n~e~RV~~~~~~l~v~fi~~A~KP---~~~~fr~Al~~m 106 (175)
T COG2179 45 PDATPELRAWLAELKEAGIKVVVVSN---NKESRVARAAEKLGVPFIYRAKKP---FGRAFRRALKEM 106 (175)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEeC---CCHHHHHhhhhhcCCceeecccCc---cHHHHHHHHHHc
Confidence 34556788888887654 35666554 344577777888888776554443 356777777776
No 373
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.67 E-value=93 Score=28.06 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=35.2
Q ss_pred eCCChhHHHHHHHHHhcCC---CcEEEEecCCCCCcHHHHHHHHHh---cCC--CeeeEEE
Q 032250 89 KTWCSYSSEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLERL---TGQ--HTVPNVF 141 (144)
Q Consensus 89 ks~CPyC~rAK~lL~e~gv---~y~~vdld~~~~d~~eiqe~L~~~---~G~--~TVP~VF 141 (144)
+..|||=.+|.-+-+++.. +|.+..|-++ .++.+++|.++ .|| ..-|.|+
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~---p~~w~~wl~~~c~~~~w~~~~spiiw 58 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKH---PDEWEDWLQDLCKKNGWSHKRSPIIW 58 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCC---hHHHHHHHHHHHHhcCCccCCCCeeH
Confidence 4689999999987776643 4889999886 34667777553 343 5567664
No 374
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=29.29 E-value=2.7e+02 Score=21.50 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=36.8
Q ss_pred HHHHHHHhhh-cCCCEEEEEeC---CChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHH
Q 032250 70 RLEESVKKTV-SENPVVVYSKT---WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (144)
Q Consensus 70 ~~~~~v~~~i-~~~~VvvYsks---~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~ 130 (144)
.+...++... ...+|++.... ++.++.+.++.|+++|++...+.+-+. .+.+++.+.+.+
T Consensus 17 ~~~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~-~~~~~~~~~l~~ 80 (210)
T cd03129 17 ILQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT-ANDPDVVARLLE 80 (210)
T ss_pred HHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC-CCCHHHHHHHhh
Confidence 3445555554 34455555443 368999999999999998776665322 233455554443
No 375
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=28.74 E-value=1.7e+02 Score=25.70 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=35.5
Q ss_pred HHHHHhhhcCC---CEEEEEeCCChhHH----HHHHHHH-hcCCCcEEEEecCCCC---CcHHHHH
Q 032250 72 EESVKKTVSEN---PVVVYSKTWCSYSS----EVKLLFK-RLGVEPLVIELDEMGP---QGPQLQK 126 (144)
Q Consensus 72 ~~~v~~~i~~~---~VvvYsks~CPyC~----rAK~lL~-e~gv~y~~vdld~~~~---d~~eiqe 126 (144)
.+.+.+++++. .|+.++...|..=. .+++.+. +.|+++-.+|.|..++ |..+++-
T Consensus 339 ~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D~~d~r~~d~gQ~~T 404 (413)
T TIGR02260 339 VDLLEKYINEYEADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETDLVDPRYFSAANVKN 404 (413)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcCCCCcccCCHHHHHH
Confidence 35566666554 37888888886543 3445554 5899999999988644 3345543
No 376
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=28.70 E-value=1.8e+02 Score=22.47 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCCEEEEE-eCCChhHHHH-HHHHHhcCCC-cEEEEec
Q 032250 81 ENPVVVYS-KTWCSYSSEV-KLLFKRLGVE-PLVIELD 115 (144)
Q Consensus 81 ~~~VvvYs-ks~CPyC~rA-K~lL~e~gv~-y~~vdld 115 (144)
...++||. ++-|.||... +.+.+++|++ .++++.+
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~~ 136 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEPD 136 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEecC
Confidence 44566665 4679999965 5677788997 4555544
No 377
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.39 E-value=1.8e+02 Score=20.64 Aligned_cols=20 Identities=15% Similarity=0.002 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCCeeeEEEEC
Q 032250 124 LQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 124 iqe~L~~~~G~~TVP~VFI~ 143 (144)
..+.+++..+...+|...|+
T Consensus 60 ~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 60 YYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHhhhcCCCEEEeC
Confidence 34556666667788998886
No 378
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.06 E-value=1.7e+02 Score=27.82 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=35.1
Q ss_pred HHHhhhcCC-CEEE-EEeCCChhHHH-HHHHHH------hcCCCcEEEEecCC-CCCcHHH-HHHHHHhcCCCeeeEE
Q 032250 74 SVKKTVSEN-PVVV-YSKTWCSYSSE-VKLLFK------RLGVEPLVIELDEM-GPQGPQL-QKLLERLTGQHTVPNV 140 (144)
Q Consensus 74 ~v~~~i~~~-~Vvv-Ysks~CPyC~r-AK~lL~------e~gv~y~~vdld~~-~~d~~ei-qe~L~~~~G~~TVP~V 140 (144)
.+++.-.++ +|.+ .+.+||.+|+- +++-++ -++-.|.-|.||.+ .||-+++ .++...++|+-.-|--
T Consensus 35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt 112 (667)
T COG1331 35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT 112 (667)
T ss_pred HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence 333343344 4443 45589999993 333333 33445766777653 1233332 3444456777776643
No 379
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=27.66 E-value=1.3e+02 Score=27.45 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=35.1
Q ss_pred chHHHHHHHhhhcCCC----EEEEEeCCChhHHHHHHHHHhcCCCcEE
Q 032250 68 GSRLEESVKKTVSENP----VVVYSKTWCSYSSEVKLLFKRLGVEPLV 111 (144)
Q Consensus 68 ~~~~~~~v~~~i~~~~----VvvYsks~CPyC~rAK~lL~e~gv~y~~ 111 (144)
=++++.|+++...+.. +++.+-++|+-...++-+.+++|+++.+
T Consensus 28 v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 28 VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 3578889988876553 5677888999999999999999987654
No 380
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=27.25 E-value=1.1e+02 Score=22.96 Aligned_cols=59 Identities=24% Similarity=0.412 Sum_probs=34.9
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhc--CCCeeeEEEEC
Q 032250 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT--GQHTVPNVFIG 143 (144)
Q Consensus 80 ~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~--G~~TVP~VFI~ 143 (144)
...+|++..+-.|.|-.+++.. ++.|...-++-=++. . .....+...+ ...++|.++|.
T Consensus 66 ~~g~IvLV~RG~CtF~~Kv~nA-q~aGA~avII~n~~~---~-~~~~m~~~~~~~~~v~IP~v~Is 126 (153)
T cd02123 66 SGSFIVLIRRGNCSFETKVRNA-QRAGYKAAIVYNDES---N-DLISMSGNDQEIKGIDIPSVFVG 126 (153)
T ss_pred CCCeEEEEECCCCCHHHHHHHH-HHCCCCEEEEEECCC---C-cceeccCCCCCCcCCEEEEEEee
Confidence 4668999999999999999974 456766544422221 1 1111111111 13478999884
No 381
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=27.24 E-value=2.1e+02 Score=21.75 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=25.3
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcC--CCcEEEEecC
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLG--VEPLVIELDE 116 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~g--v~y~~vdld~ 116 (144)
...+|+.--.|++|....++|.++. -.+...++-.
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~ 44 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQS 44 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccC
Confidence 3456666688999999999998764 3466666554
No 382
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=27.05 E-value=3.3e+02 Score=21.77 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=27.7
Q ss_pred hHHHHHHHhhhcCC---CEEEEEeCCChhHHHHHHHHHhc
Q 032250 69 SRLEESVKKTVSEN---PVVVYSKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 69 ~~~~~~v~~~i~~~---~VvvYsks~CPyC~rAK~lL~e~ 105 (144)
+++.+.+++.+... .+++|+.++|+--.-++.+.++.
T Consensus 23 ~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 23 EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44556666666543 48999999999988888888765
No 383
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=26.45 E-value=84 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=20.8
Q ss_pred CEEEEEeCCChhHHHHHHHHH----hcCCCcE
Q 032250 83 PVVVYSKTWCSYSSEVKLLFK----RLGVEPL 110 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~----e~gv~y~ 110 (144)
+|-+|+-.-||||--+++.|+ ..+++++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~ 33 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDIT 33 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEE
Confidence 577999999999997776665 4455544
No 384
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=26.42 E-value=96 Score=27.95 Aligned_cols=54 Identities=9% Similarity=0.261 Sum_probs=29.5
Q ss_pred cccccceeEEecc---CCcchHHHHHHHhhhcCC-CEEEEEeCCChhHHHHH----HHHHhcCCCc
Q 032250 52 RRRYGAVSVQAMA---SSYGSRLEESVKKTVSEN-PVVVYSKTWCSYSSEVK----LLFKRLGVEP 109 (144)
Q Consensus 52 ~~~~g~~~~~~~~---~~~~~~~~~~v~~~i~~~-~VvvYsks~CPyC~rAK----~lL~e~gv~y 109 (144)
++.|+.+...... -.+|.++ .+++..++ ..+|.+ ++|+-|+|-- +-+++.|++.
T Consensus 306 ~~fy~t~G~gt~~~~a~~~g~eI---a~~Lk~dgVDAvILt-stCgtCtrcga~m~keiE~~GIPv 367 (431)
T TIGR01917 306 KYFYSTTGNGTAVANSKQFAKEF---SKELLAAGVDAVILT-STUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred CeeEEccCCCccHHHHHHHHHHH---HHHHHHcCCCEEEEc-CCCCcchhHHHHHHHHHHHcCCCE
Confidence 5666666544322 1233333 33333333 455555 7899998643 4567788874
No 385
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=26.37 E-value=2e+02 Score=19.06 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=24.2
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhc---CCCcEEEEecC
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRL---GVEPLVIELDE 116 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~---gv~y~~vdld~ 116 (144)
..+++++.++|+-..-++.+.+.. +.++..++..+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 457778888888888777777766 55555555544
No 386
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=26.26 E-value=1.5e+02 Score=25.10 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=32.2
Q ss_pred CCEEEEEe-CCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcHHHHHHH
Q 032250 82 NPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGP-QGPQLQKLL 128 (144)
Q Consensus 82 ~~VvvYsk-s~CPyC~rAK~lL~e~gv~y~~vdld~~~~-d~~eiqe~L 128 (144)
.++++.+. +....+.+|.+.|++.|++..++|+....| |.+.+.+.+
T Consensus 202 ~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~ 250 (327)
T PRK09212 202 SDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESV 250 (327)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHH
Confidence 35555444 567888899999999999999998766544 333344443
No 387
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.04 E-value=75 Score=26.59 Aligned_cols=57 Identities=11% Similarity=0.310 Sum_probs=38.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC-------cEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 84 VVVYSKTWCSYSSEVKLLFKRLGVE-------PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 84 VvvYsks~CPyC~rAK~lL~e~gv~-------y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
++-|...|.|.|++.-.++.++.++ |-.+|+..- +|..+ +--+..-.+.+++|++.+
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-pd~a~-kfris~s~~srQLPT~il 211 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-PDVAA-KFRISLSPGSRQLPTYIL 211 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-cChHH-heeeccCcccccCCeEEE
Confidence 6778889999999999999887554 567888764 34322 111222346788888754
No 388
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=25.99 E-value=1.7e+02 Score=21.14 Aligned_cols=59 Identities=22% Similarity=0.389 Sum_probs=35.2
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHH-HhcCCCeeeEEEEC
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLE-RLTGQHTVPNVFIG 143 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~-~~~G~~TVP~VFI~ 143 (144)
+.+|++-.+-.|.|-.+++. .++.|...-.+-=+.. +...-..+. ......++|.+||.
T Consensus 39 ~gkIvLV~RG~CsF~~K~~n-Aq~aGA~avII~n~~~---~~~~~~m~~~~~~~~v~IPav~Is 98 (117)
T cd04813 39 DGKVALVLRGGCGFLDKVMW-AQRRGAKAVIVGDDEP---GRGLITMFSNGDTDNVTIPAMFTS 98 (117)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCC---cccceecccCCCCCCcEEEEEEEc
Confidence 56788888889999999986 6666776554422221 111111111 11234589999984
No 389
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=25.99 E-value=1.1e+02 Score=21.73 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=19.3
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEECC
Q 032250 108 EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGK 144 (144)
Q Consensus 108 ~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~G 144 (144)
....+|++++ ...+.++. -.+++|.+||.|
T Consensus 49 tit~~e~~E~-----~~e~~~k~--~~r~~emlFvRG 78 (91)
T KOG3460|consen 49 TITTVEIDED-----TYEEIVKT--TKRTVEMLFVRG 78 (91)
T ss_pred eEEEeeccch-----hHHHHHhh--hhcceeEEEEeC
Confidence 3556666664 23444443 368999999976
No 390
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=25.76 E-value=2e+02 Score=23.57 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEE
Q 032250 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV 140 (144)
Q Consensus 73 ~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~V 140 (144)
..+++.+...+. +|+.----.+..+-+++...|.+|.++|.+...-|.+++.+.+.........|.|
T Consensus 8 n~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lV 74 (256)
T PRK10558 8 NKFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVV 74 (256)
T ss_pred HHHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEE
Confidence 345555554543 2332112334467788999999999999987643555555555433333344444
No 391
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=25.60 E-value=48 Score=30.05 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=33.9
Q ss_pred HHHhhhcCCCEEEE-----EeCCChhHHHHHHHHHhcCCCcEEEEecC
Q 032250 74 SVKKTVSENPVVVY-----SKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 74 ~v~~~i~~~~VvvY-----sks~CPyC~rAK~lL~e~gv~y~~vdld~ 116 (144)
.+..+...|.|||= ++++|-||..++..|+..|.+.+.+++-.
T Consensus 209 iiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~it 256 (583)
T KOG2454|consen 209 IIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVIT 256 (583)
T ss_pred HHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheee
Confidence 44556677877764 45789999999999999999988887643
No 392
>PHA00729 NTP-binding motif containing protein
Probab=25.57 E-value=1.6e+02 Score=24.08 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=21.1
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcC
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLG 106 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~g 106 (144)
.|+|++.++++-.+-|..+.++.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999998888764
No 393
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=25.45 E-value=1.6e+02 Score=21.98 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=18.3
Q ss_pred CCEEEEEe-CCChhHHHHHHHHHhc
Q 032250 82 NPVVVYSK-TWCSYSSEVKLLFKRL 105 (144)
Q Consensus 82 ~~VvvYsk-s~CPyC~rAK~lL~e~ 105 (144)
..|.+|+. +.|+.|..+..-|.+.
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~~ 121 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKKD 121 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHHH
Confidence 67999997 6799999876555543
No 394
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=25.07 E-value=41 Score=22.55 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=29.9
Q ss_pred cccccccccceeeeecccccccceeEEeccCCcchHHHHHHHhhhc
Q 032250 35 NNYYTFSSRTSLSVNGRRRRYGAVSVQAMASSYGSRLEESVKKTVS 80 (144)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~i~ 80 (144)
+||+.+-+-..-+.-|-|+.-|.--+-+-....++++++|+++.+.
T Consensus 2 kNFKkFkKv~~pGa~~lP~IIGGSDLi~h~~~knseleeWl~~e~E 47 (65)
T PF08599_consen 2 KNFKKFKKVAYPGAGGLPHIIGGSDLIAHHAGKNSELEEWLRQEME 47 (65)
T ss_pred cchhhhcccccCCCCCCCeeecchhhhhccccccccHHHHHHHHHH
Confidence 5888888877777655555544433333345677788888887653
No 395
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=24.53 E-value=2.1e+02 Score=18.59 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=25.8
Q ss_pred CChhHHH-HHHHHHhcC-CCcE---------EEEecCCCCCcHHHHHHHHHhcCCCe
Q 032250 91 WCSYSSE-VKLLFKRLG-VEPL---------VIELDEMGPQGPQLQKLLERLTGQHT 136 (144)
Q Consensus 91 ~CPyC~r-AK~lL~e~g-v~y~---------~vdld~~~~d~~eiqe~L~~~~G~~T 136 (144)
.|.+|.. +++.|.+.+ +.-. .+.+|....+.+++.+++.+. |+..
T Consensus 12 tC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~a-Gy~~ 67 (71)
T COG2608 12 TCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDA-GYKV 67 (71)
T ss_pred CcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHc-CCCe
Confidence 5999984 568888775 3322 233333212445677776554 5544
No 396
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=24.43 E-value=4.3e+02 Score=22.70 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=31.0
Q ss_pred CCEEEEEeC---CChhHHHHHHHHHhcCCCcEEEE-ecCCCCCcHHHHHHHHHh
Q 032250 82 NPVVVYSKT---WCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (144)
Q Consensus 82 ~~VvvYsks---~CPyC~rAK~lL~e~gv~y~~vd-ld~~~~d~~eiqe~L~~~ 131 (144)
.+++|.+.+ .-++-.+++..|++.|+++.+++ +..+ +..+.+++.....
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~-p~~~~v~~~~~~~ 74 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPD-PSLETVRKGLELM 74 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCC-cCHHHHHHHHHHH
Confidence 456555533 24678889999999999887664 5543 4445555554443
No 397
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=24.37 E-value=4.1e+02 Score=22.00 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=30.5
Q ss_pred HHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHh----cCCC--cEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKR----LGVE--PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 71 ~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e----~gv~--y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
+.+.++++-.+ .+.+..-+..+. ..++.+|+. .++. |..+..... ++...+++.++++ |...==.||||
T Consensus 36 ~~e~L~~L~~~-Gi~lai~S~n~~-~~a~~~l~~~~~~~~~~~~f~~~~~~~~-pk~~~i~~~~~~l-~i~~~~~vfid 110 (320)
T TIGR01686 36 LQEKIKTLKKQ-GFLLALASKNDE-DDAKKVFERRKDFILQAEDFDARSINWG-PKSESLRKIAKKL-NLGTDSFLFID 110 (320)
T ss_pred HHHHHHHHHhC-CCEEEEEcCCCH-HHHHHHHHhCccccCcHHHeeEEEEecC-chHHHHHHHHHHh-CCCcCcEEEEC
Confidence 44444444333 344444444444 456666666 4443 344433322 3444455555544 22222345554
No 398
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=23.99 E-value=1.1e+02 Score=27.63 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=29.4
Q ss_pred cccccceeEEeccCCcchHHHHHHHhhhcCC-CEEEEEeCCChhHHHHH----HHHHhcCCCc
Q 032250 52 RRRYGAVSVQAMASSYGSRLEESVKKTVSEN-PVVVYSKTWCSYSSEVK----LLFKRLGVEP 109 (144)
Q Consensus 52 ~~~~g~~~~~~~~~~~~~~~~~~v~~~i~~~-~VvvYsks~CPyC~rAK----~lL~e~gv~y 109 (144)
++.|+.+.............++..+++..++ ..+|.+ ++|+-|+|-- +-+++.|++.
T Consensus 306 ~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILT-stCgtC~r~~a~m~keiE~~GiPv 367 (431)
T TIGR01918 306 EYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILT-STUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred CeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEc-CCCCcchhHHHHHHHHHHHcCCCE
Confidence 5566555433222111122233444444333 455555 7899988653 4566788874
No 399
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=23.83 E-value=3e+02 Score=24.37 Aligned_cols=32 Identities=16% Similarity=0.011 Sum_probs=28.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEe
Q 032250 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (144)
Q Consensus 83 ~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdl 114 (144)
.+++|+-++|+--.-+|.+..+.++++..++.
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~ 121 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 121 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccH
Confidence 59999999999999999999999998877654
No 400
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=23.75 E-value=3.2e+02 Score=20.65 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=29.3
Q ss_pred HHHHHHhhh---cCCCEEEEEeCCChhHHHHHHHHHhc---CCCcEEEEecC
Q 032250 71 LEESVKKTV---SENPVVVYSKTWCSYSSEVKLLFKRL---GVEPLVIELDE 116 (144)
Q Consensus 71 ~~~~v~~~i---~~~~VvvYsks~CPyC~rAK~lL~e~---gv~y~~vdld~ 116 (144)
+.+.+++.+ ....|.+|+.++|+--.-|+.+.++. +.++.+++++.
T Consensus 25 ~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 25 LLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 344444432 33468899999999888887776543 45555666554
No 401
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=23.66 E-value=1.8e+02 Score=19.77 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=26.1
Q ss_pred HHHHHHHhhh--cCCCEEEEEeCCChhHHHHHHHHHhcCCC
Q 032250 70 RLEESVKKTV--SENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (144)
Q Consensus 70 ~~~~~v~~~i--~~~~VvvYsks~CPyC~rAK~lL~e~gv~ 108 (144)
++++.+++.- ...+|++|... +..+.++-..|+..|.+
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~-g~~s~~~~~~l~~~G~~ 104 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGS-GVTACVLLLALELLGYK 104 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCc-HHHHHHHHHHHHHcCCC
Confidence 3444444432 45578888765 67788888889999985
No 402
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=23.22 E-value=2.4e+02 Score=21.62 Aligned_cols=38 Identities=13% Similarity=0.340 Sum_probs=25.7
Q ss_pred chHHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhc
Q 032250 68 GSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL 105 (144)
Q Consensus 68 ~~~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~ 105 (144)
+.++-+.|.....+--|+=|+.+|-|-|.+.-.+|.+-
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i 48 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSI 48 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHH
Confidence 33444444443333346679999999999999888754
No 403
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=23.05 E-value=1.6e+02 Score=21.59 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCCcEEEEecCC
Q 032250 97 EVKLLFKRLGVEPLVIELDEM 117 (144)
Q Consensus 97 rAK~lL~e~gv~y~~vdld~~ 117 (144)
.|+++|+++|++|+.++-+..
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~ 22 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVD 22 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCC
Confidence 478999999999999988753
No 404
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=23.03 E-value=3.1e+02 Score=20.13 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCcEEEEecCC
Q 032250 96 SEVKLLFKRLGVEPLVIELDEM 117 (144)
Q Consensus 96 ~rAK~lL~e~gv~y~~vdld~~ 117 (144)
.+++++|+++|++|+.++.+..
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~ 23 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPV 23 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCc
Confidence 3678899999999999887653
No 405
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=22.94 E-value=1.1e+02 Score=24.83 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=19.6
Q ss_pred EEEeCCChhHHHHHHHHHhcCCC
Q 032250 86 VYSKTWCSYSSEVKLLFKRLGVE 108 (144)
Q Consensus 86 vYsks~CPyC~rAK~lL~e~gv~ 108 (144)
++-...||.++.+|+.|++.|+.
T Consensus 150 i~~t~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 150 ISKTSGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred EeccccCcHHHHHHHHHHHcCCC
Confidence 45556799999999999999985
No 406
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=22.93 E-value=3.8e+02 Score=21.14 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=51.6
Q ss_pred eeeeeccc------ccccceeEEeccCCcchHHHHHHHhhhcCCCEEEEEeCCChhHHHHHHHHHhc--CCCcEEEE---
Q 032250 45 SLSVNGRR------RRYGAVSVQAMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL--GVEPLVIE--- 113 (144)
Q Consensus 45 ~l~~~~~~------~~~g~~~~~~~~~~~~~~~~~~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~--gv~y~~vd--- 113 (144)
++++.|+. |.+.+-.+..-.+..+.+..+.++++.....|+||+-|.-+ -.+.|+.+.+. ++..-+++
T Consensus 5 vIVVEGK~D~~~lk~~~d~~~I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~-GekIRk~i~~~vp~~khafi~~~~ 83 (174)
T TIGR00334 5 IIVVEGKDDQARIKQAFDVDVIETNGSALKDETINLIKKAQKKQGVIILTDPDFP-GEKIRKKIEQHLPGYENCFIPKHL 83 (174)
T ss_pred EEEEecchHHHHHHHhcCceEEEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCc-hHHHHHHHHHHCCCCeEEeeeHHh
Confidence 56666654 33332233323344577888899999999999999976543 56777777764 23222222
Q ss_pred -------ecCCCCCcHHHHHHHHHhc
Q 032250 114 -------LDEMGPQGPQLQKLLERLT 132 (144)
Q Consensus 114 -------ld~~~~d~~eiqe~L~~~~ 132 (144)
+.-.+.+.++++++|....
T Consensus 84 a~~~~~~iGVE~As~e~I~~AL~~~~ 109 (174)
T TIGR00334 84 AKPNKKKIGVEEASVEAIIAALENVH 109 (174)
T ss_pred cCcCCCCcccCCCCHHHHHHHHHHhc
Confidence 1111124567888887653
No 407
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=22.83 E-value=3.7e+02 Score=21.73 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=39.4
Q ss_pred ccccccceeEEeccCCcchHHHHHHHhhhcCC----CEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecC
Q 032250 51 RRRRYGAVSVQAMASSYGSRLEESVKKTVSEN----PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 51 ~~~~~g~~~~~~~~~~~~~~~~~~v~~~i~~~----~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~ 116 (144)
|.++|.+....... ..+++.+.+++.+..+ .+++++-++++--.-++.+.++.+.++.+++..+
T Consensus 11 w~~kyrP~~~~~~~--~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 11 WEQKYRPSTIDECI--LPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred ceeccCCCcHHHhc--CcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 45555555444332 2334455555555433 3445799999999888888888877666666554
No 408
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=22.69 E-value=2.1e+02 Score=17.96 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=22.8
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHhcCCCc
Q 032250 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEP 109 (144)
Q Consensus 80 ~~~~VvvYsks~CPyC~rAK~lL~e~gv~y 109 (144)
...+|++|. ..+..+.++-..|++.|.+-
T Consensus 55 ~~~~iv~~c-~~g~~a~~~~~~l~~~G~~~ 83 (100)
T smart00450 55 KDKPVVVYC-RSGNRSAKAAWLLRELGFKN 83 (100)
T ss_pred CCCeEEEEe-CCCcHHHHHHHHHHHcCCCc
Confidence 455788888 66777888889999998863
No 409
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=22.38 E-value=4e+02 Score=22.02 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=38.0
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCCeeeEEEEC
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~TVP~VFI~ 143 (144)
..+++|+-++|+--.-|+.+.++.+..+....-... .....+...+..+ ..-..+|||
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~-~~~~~l~~~l~~l---~~~~vl~ID 109 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL-EKPGDLAAILTNL---EEGDVLFID 109 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc-cChHHHHHHHHhc---ccCCEEEEe
Confidence 469999999999999999999999987766543322 1122333333332 234567776
No 410
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=21.92 E-value=1.5e+02 Score=26.68 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=33.4
Q ss_pred CCEEEEEe-CCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcHHHHHHH
Q 032250 82 NPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGP-QGPQLQKLL 128 (144)
Q Consensus 82 ~~VvvYsk-s~CPyC~rAK~lL~e~gv~y~~vdld~~~~-d~~eiqe~L 128 (144)
.+|+|.+. ..+..|.+|.+.|++.|++.+++|+....| |.+.+.+.+
T Consensus 341 ~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv 389 (464)
T PRK11892 341 KDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESV 389 (464)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHH
Confidence 35665554 458889999999999999999999866544 333344433
No 411
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=21.89 E-value=2.4e+02 Score=23.88 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=28.8
Q ss_pred CCEEEEEe-CCChhHHHHHHHHHhcCCCcEEEEecCCCC
Q 032250 82 NPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGP 119 (144)
Q Consensus 82 ~~VvvYsk-s~CPyC~rAK~lL~e~gv~y~~vdld~~~~ 119 (144)
.+++|.+. .....|.+|.+.|++.|++.+++|+....|
T Consensus 202 ~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikP 240 (327)
T CHL00144 202 NDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKP 240 (327)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCC
Confidence 34554443 457789999999999999999999866544
No 412
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=21.82 E-value=85 Score=24.98 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcCCC--eeeEEEECC
Q 032250 97 EVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQH--TVPNVFIGK 144 (144)
Q Consensus 97 rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G~~--TVP~VFI~G 144 (144)
.+|++|++.|++.-.-.+-.. .++.+++..++.+.. -=|||..||
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s---~eea~~~~~~l~~~~~VvKaQvl~Gg 52 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATS---PEEAREAAKELGGKPLVVKAQVLAGG 52 (202)
T ss_dssp HHHHHHHCTT----SEEEESS---HHHHHHHHHHHTTSSEEEEE-SSSST
T ss_pred HHHHHHHHcCCCCCCeeecCC---HHHHHHHHHHhCCCcEEEEEeEeecC
Confidence 689999999998654444432 356666666664432 125555443
No 413
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=21.53 E-value=2.3e+02 Score=19.29 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=25.1
Q ss_pred hhcCCCEEEEEeC-CChhHHHHHHHHHhcCCCcEEEEecC
Q 032250 78 TVSENPVVVYSKT-WCSYSSEVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 78 ~i~~~~VvvYsks-~CPyC~rAK~lL~e~gv~y~~vdld~ 116 (144)
+-...+|++|... .|....++-..|++.|.+ ...++.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~--v~~l~G 98 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELGFP--VKEMIG 98 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcCCe--EEEecC
Confidence 3356689999754 365666777788899985 445553
No 414
>PRK06756 flavodoxin; Provisional
Probab=21.49 E-value=3.2e+02 Score=19.66 Aligned_cols=40 Identities=5% Similarity=0.011 Sum_probs=24.8
Q ss_pred hHHHHHHHhh----hcCCCEEEEEe-----CC-ChhHHHHHHHHHhcCCC
Q 032250 69 SRLEESVKKT----VSENPVVVYSK-----TW-CSYSSEVKLLFKRLGVE 108 (144)
Q Consensus 69 ~~~~~~v~~~----i~~~~VvvYsk-----s~-CPyC~rAK~lL~e~gv~ 108 (144)
..+.++++++ .+..++.+|+. .| |..-+...+.|+++|+.
T Consensus 67 ~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~ 116 (148)
T PRK06756 67 DDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAA 116 (148)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCE
Confidence 3456666654 24557888876 22 55555666777888865
No 415
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=20.77 E-value=1.7e+02 Score=21.30 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCcEEEEecC
Q 032250 96 SEVKLLFKRLGVEPLVIELDE 116 (144)
Q Consensus 96 ~rAK~lL~e~gv~y~~vdld~ 116 (144)
.++.++|++++++|++++...
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~ 22 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPE 22 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCC
Confidence 367788888898888888874
No 416
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=20.75 E-value=1.8e+02 Score=25.09 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCCEEEEE-eCCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcHHHHHHH
Q 032250 81 ENPVVVYS-KTWCSYSSEVKLLFKRLGVEPLVIELDEMGP-QGPQLQKLL 128 (144)
Q Consensus 81 ~~~VvvYs-ks~CPyC~rAK~lL~e~gv~y~~vdld~~~~-d~~eiqe~L 128 (144)
..+++|.+ -+....|.+|.+.|++.|++..++++....| |.+.+.+.+
T Consensus 233 G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~ 282 (355)
T PTZ00182 233 GKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSV 282 (355)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHH
Confidence 34555444 4668889999999999999999998866644 323344443
No 417
>PLN02590 probable tyrosine decarboxylase
Probab=20.70 E-value=3.6e+02 Score=24.72 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=39.1
Q ss_pred CCEEEEEeCCChhHHHHHHHHHhcCC---CcEEEEecCC---CCCcHHHHHHHHHhcCCCeeeEEEE
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKRLGV---EPLVIELDEM---GPQGPQLQKLLERLTGQHTVPNVFI 142 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e~gv---~y~~vdld~~---~~d~~eiqe~L~~~~G~~TVP~VFI 142 (144)
.++++|..+.+.||. .+.+.-+|+ ....|.+|.. .-|.+++++++.+-...--.|.++|
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~Vv 292 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFIC 292 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 468999999999985 556666666 3667777742 1256778877766433345676655
No 418
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=20.60 E-value=2.4e+02 Score=19.44 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=34.0
Q ss_pred HHHHHHhhhcCCC-EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCCcHHHHHHHHHhcC
Q 032250 71 LEESVKKTVSENP-VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTG 133 (144)
Q Consensus 71 ~~~~v~~~i~~~~-VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~~~d~~eiqe~L~~~~G 133 (144)
..+.++.+.+.++ +++.+-.....-....+-|+++|++...-++-. .+....++|++..+
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~t---s~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIIT---SGMAAAEYLKEHKG 79 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEE---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEC---hHHHHHHHHHhcCC
Confidence 3577777777665 545554444444666677799999865433322 24566777777433
No 419
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=20.54 E-value=2e+02 Score=25.41 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=34.6
Q ss_pred HHHHHhhhcCC---CEEEEEeCCChhHH----HHHHHHHhcCCCcEEEEecCCC
Q 032250 72 EESVKKTVSEN---PVVVYSKTWCSYSS----EVKLLFKRLGVEPLVIELDEMG 118 (144)
Q Consensus 72 ~~~v~~~i~~~---~VvvYsks~CPyC~----rAK~lL~e~gv~y~~vdld~~~ 118 (144)
.+.+.+++++. .|+.++-..|..=. .+|+.+++.|++|-.+|-|-.+
T Consensus 350 ~~~l~~li~e~~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~d 403 (430)
T TIGR03191 350 SEMMLNIARDWNVDGCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMGD 403 (430)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCCC
Confidence 35555566544 38888888886543 5678889999999999988764
No 420
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=20.53 E-value=3.9e+02 Score=23.02 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=37.2
Q ss_pred HHHhhhcCCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCC
Q 032250 74 SVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (144)
Q Consensus 74 ~v~~~i~~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld~~ 117 (144)
.+..+....+|.+.+-++|+--.-++.+.+++|.++..+.++.+
T Consensus 57 vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~ 100 (327)
T TIGR01650 57 ICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSH 100 (327)
T ss_pred HHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCC
Confidence 33344456789999999999999999999999999999988775
No 421
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=20.27 E-value=1.9e+02 Score=23.89 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.8
Q ss_pred eCCChhHHHHHHHHHhc--CCCcEEEEecC
Q 032250 89 KTWCSYSSEVKLLFKRL--GVEPLVIELDE 116 (144)
Q Consensus 89 ks~CPyC~rAK~lL~e~--gv~y~~vdld~ 116 (144)
--+|+.+..++.+++.. +..|.-+|++.
T Consensus 69 ELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~ 98 (301)
T TIGR03438 69 ELGSGSSRKTRLLLDALRQPARYVPIDISA 98 (301)
T ss_pred ecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence 46799999999999987 57788888876
No 422
>CHL00195 ycf46 Ycf46; Provisional
Probab=20.19 E-value=2.4e+02 Score=25.52 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=31.1
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHhcCCCcEEEEec
Q 032250 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (144)
Q Consensus 81 ~~~VvvYsks~CPyC~rAK~lL~e~gv~y~~vdld 115 (144)
.+.|.+|+-++|+-..-||.+..+.|+++..++..
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~ 293 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVG 293 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhH
Confidence 34699999999999999999999999998888764
No 423
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=20.08 E-value=4e+02 Score=21.97 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=18.4
Q ss_pred CCEEEEEeCCChhHHHHHHHHHh
Q 032250 82 NPVVVYSKTWCSYSSEVKLLFKR 104 (144)
Q Consensus 82 ~~VvvYsks~CPyC~rAK~lL~e 104 (144)
..++||+.++++--.-++.++++
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 45888999999888888877764
Done!