Query 032251
Match_columns 144
No_of_seqs 120 out of 1021
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 11:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02865 galactokinase 100.0 1.3E-35 2.7E-40 249.3 17.0 144 1-144 280-423 (423)
2 COG0153 GalK Galactokinase [Ca 100.0 2E-35 4.3E-40 242.9 16.3 137 1-144 251-389 (390)
3 PTZ00290 galactokinase; Provis 100.0 1.1E-32 2.4E-37 233.7 16.6 131 7-144 319-456 (468)
4 PRK05101 galactokinase; Provis 100.0 8.3E-32 1.8E-36 223.9 17.1 136 2-144 246-382 (382)
5 PRK05322 galactokinase; Provis 100.0 2.1E-30 4.6E-35 215.8 17.0 136 2-144 251-387 (387)
6 PRK00555 galactokinase; Provis 100.0 6.7E-30 1.4E-34 211.3 17.2 133 4-144 230-362 (363)
7 PLN02521 galactokinase 100.0 2.9E-30 6.3E-35 220.7 14.7 128 15-143 359-493 (497)
8 TIGR00131 gal_kin galactokinas 100.0 4.5E-30 9.8E-35 213.4 15.4 130 8-144 257-386 (386)
9 PRK03817 galactokinase; Provis 100.0 4.5E-27 9.8E-32 193.1 16.8 127 10-144 224-350 (351)
10 KOG0631 Galactokinase [Carbohy 99.9 2.5E-21 5.4E-26 162.6 11.1 127 15-143 353-486 (489)
11 COG1577 ERG12 Mevalonate kinas 99.7 6.9E-17 1.5E-21 131.1 12.4 83 30-117 212-294 (307)
12 PF08544 GHMP_kinases_C: GHMP 99.7 5.1E-17 1.1E-21 107.5 8.5 82 34-116 1-84 (85)
13 PTZ00298 mevalonate kinase; Pr 99.7 3.8E-16 8.2E-21 127.6 15.1 87 30-118 226-313 (328)
14 PRK03926 mevalonate kinase; Pr 99.7 3E-15 6.5E-20 120.4 15.3 96 32-143 202-298 (302)
15 TIGR00549 mevalon_kin mevalona 99.7 7E-16 1.5E-20 122.2 11.0 68 29-98 206-273 (273)
16 PLN02677 mevalonate kinase 99.7 2.7E-15 5.8E-20 125.4 14.0 100 31-143 272-381 (387)
17 TIGR01220 Pmev_kin_Gr_pos phos 99.6 1.6E-14 3.4E-19 119.5 13.2 80 31-112 258-343 (358)
18 PRK13412 fkp bifunctional fuco 99.6 2.4E-14 5.3E-19 130.0 14.0 81 31-113 868-950 (974)
19 COG2605 Predicted kinase relat 99.6 2.4E-14 5.2E-19 114.7 12.2 84 30-114 229-313 (333)
20 PLN02451 homoserine kinase 99.3 3E-11 6.6E-16 100.5 13.9 106 25-143 255-364 (370)
21 KOG1511 Mevalonate kinase MVK/ 99.3 2.1E-11 4.6E-16 99.8 12.5 110 19-143 262-379 (397)
22 PRK01212 homoserine kinase; Pr 99.3 1.5E-11 3.3E-16 99.0 11.1 107 23-144 193-301 (301)
23 COG0083 ThrB Homoserine kinase 99.3 2.5E-11 5.5E-16 98.2 11.3 109 21-144 187-297 (299)
24 PTZ00299 homoserine kinase; Pr 99.3 1.6E-11 3.6E-16 101.0 9.4 119 8-143 188-321 (336)
25 TIGR00191 thrB homoserine kina 99.1 1.2E-09 2.7E-14 88.2 11.0 106 23-143 193-301 (302)
26 PRK03188 4-diphosphocytidyl-2- 99.0 3.7E-09 8E-14 85.3 9.9 97 29-144 196-295 (300)
27 PRK02534 4-diphosphocytidyl-2- 98.9 1.2E-08 2.7E-13 82.8 8.7 101 27-143 207-310 (312)
28 PRK00128 ipk 4-diphosphocytidy 98.8 7.4E-09 1.6E-13 82.8 6.7 77 31-114 194-272 (286)
29 TIGR00144 beta_RFAP_syn beta-R 98.8 1.7E-07 3.6E-12 76.9 12.6 103 25-143 214-323 (324)
30 TIGR01920 Shik_kin_archae shik 98.6 2.3E-07 5E-12 73.8 8.7 73 29-113 181-253 (261)
31 PRK14613 4-diphosphocytidyl-2- 98.6 2.5E-07 5.4E-12 75.0 7.9 80 31-117 208-289 (297)
32 PRK01123 shikimate kinase; Pro 98.5 1.2E-06 2.7E-11 70.2 10.4 86 33-143 195-281 (282)
33 COG1907 Predicted archaeal sug 98.5 6.7E-06 1.4E-10 66.4 13.3 122 5-143 183-310 (312)
34 PRK14616 4-diphosphocytidyl-2- 98.4 7.7E-07 1.7E-11 71.5 7.2 82 29-117 193-276 (287)
35 TIGR01219 Pmev_kin_ERG8 phosph 98.3 2.7E-05 5.8E-10 66.7 14.0 74 42-117 353-431 (454)
36 KOG1537 Homoserine kinase [Ami 98.3 6E-06 1.3E-10 66.1 8.7 101 22-136 239-344 (355)
37 PRK14612 4-diphosphocytidyl-2- 98.2 1.5E-06 3.2E-11 69.6 4.3 75 30-114 189-264 (276)
38 TIGR00154 ispE 4-diphosphocyti 98.2 5.3E-06 1.1E-10 67.1 7.3 76 34-115 199-275 (293)
39 PRK14614 4-diphosphocytidyl-2- 98.1 3.4E-06 7.4E-11 67.6 4.5 46 65-113 222-268 (280)
40 PRK14615 4-diphosphocytidyl-2- 98.1 1.4E-05 3.1E-10 64.7 7.6 47 64-113 239-286 (296)
41 PRK14609 4-diphosphocytidyl-2- 97.7 2.9E-05 6.4E-10 62.1 2.7 46 54-102 208-253 (269)
42 PRK14608 4-diphosphocytidyl-2- 97.6 9.7E-05 2.1E-09 59.6 5.5 46 65-113 230-277 (290)
43 PRK14610 4-diphosphocytidyl-2- 97.3 0.00048 1E-08 55.4 5.6 57 54-113 211-269 (283)
44 PRK14611 4-diphosphocytidyl-2- 97.2 0.0009 1.9E-08 53.5 5.9 80 15-101 174-254 (275)
45 TIGR01240 mevDPdecarb diphosph 96.1 0.16 3.4E-06 41.6 11.8 83 30-115 212-304 (305)
46 PRK00343 ipk 4-diphosphocytidy 96.0 0.013 2.9E-07 46.8 5.3 45 65-114 217-262 (271)
47 COG1685 Archaeal shikimate kin 95.5 0.37 8.1E-06 38.9 11.2 78 38-142 196-274 (278)
48 COG1947 IspE 4-diphosphocytidy 94.7 0.056 1.2E-06 44.0 4.7 46 65-113 225-271 (289)
49 PRK00650 4-diphosphocytidyl-2- 94.5 0.093 2E-06 42.6 5.6 49 65-116 206-259 (288)
50 KOG4644 L-fucose kinase [Carbo 94.0 0.87 1.9E-05 40.3 10.7 92 17-110 819-917 (948)
51 PLN02407 diphosphomevalonate d 92.9 0.85 1.8E-05 38.0 8.5 86 29-116 235-332 (343)
52 COG3407 MVD1 Mevalonate pyroph 90.8 5.1 0.00011 33.3 10.8 82 32-115 218-308 (329)
53 PRK05905 hypothetical protein; 89.6 0.39 8.4E-06 38.4 3.3 31 65-99 223-253 (258)
54 PF03460 NIR_SIR_ferr: Nitrite 82.1 3.7 8E-05 25.5 4.4 47 64-113 22-68 (69)
55 COG4542 PduX Protein involved 65.0 75 0.0016 25.9 11.2 79 33-117 201-283 (293)
56 KOG2833 Mevalonate pyrophospha 63.0 92 0.002 26.2 10.3 95 17-117 224-331 (395)
57 COG4710 Predicted DNA-binding 62.8 14 0.00031 24.1 3.5 63 11-73 10-76 (80)
58 PF06698 DUF1192: Protein of u 58.2 30 0.00066 21.5 4.4 21 15-35 24-44 (59)
59 COG0024 Map Methionine aminope 53.9 37 0.0008 27.2 5.3 39 61-99 34-72 (255)
60 PRK11199 tyrA bifunctional cho 51.5 1E+02 0.0022 25.6 7.9 45 32-76 325-369 (374)
61 COG3064 TolA Membrane protein 47.1 21 0.00044 29.8 2.9 23 84-106 38-62 (387)
62 PRK04181 4-diphosphocytidyl-2- 43.3 22 0.00047 28.3 2.5 26 65-100 230-255 (257)
63 PF12687 DUF3801: Protein of u 42.5 82 0.0018 24.2 5.5 67 44-113 22-89 (204)
64 PF03118 RNA_pol_A_CTD: Bacter 42.2 26 0.00056 21.9 2.3 44 32-75 21-64 (66)
65 PRK07758 hypothetical protein; 42.1 33 0.00071 23.4 2.9 48 32-80 44-91 (95)
66 COG2221 DsrA Dissimilatory sul 41.0 56 0.0012 27.1 4.6 46 64-112 43-88 (317)
67 PRK00411 cdc6 cell division co 40.8 2E+02 0.0043 23.5 11.2 69 44-114 316-387 (394)
68 PHA01735 hypothetical protein 40.8 25 0.00054 22.7 2.0 42 3-44 7-48 (76)
69 PF03991 Prion_octapep: Copper 40.1 14 0.00031 13.9 0.5 6 87-92 2-7 (8)
70 PF15136 UPF0449: Uncharacteri 37.9 1E+02 0.0022 21.1 4.8 38 15-52 53-92 (97)
71 PF06153 DUF970: Protein of un 37.1 61 0.0013 22.6 3.7 51 67-118 12-67 (109)
72 COG3890 ERG8 Phosphomevalonate 33.9 2.7E+02 0.0059 23.0 10.0 32 70-102 276-307 (337)
73 TIGR02928 orc1/cdc6 family rep 33.6 2.5E+02 0.0055 22.6 7.7 48 45-94 309-359 (365)
74 PF02153 PDH: Prephenate dehyd 33.6 1.8E+02 0.0038 22.8 6.3 20 33-52 239-258 (258)
75 PRK13798 putative OHCU decarbo 32.0 2.1E+02 0.0046 21.2 7.1 106 9-133 10-119 (166)
76 TIGR01743 purR_Bsub pur operon 30.8 2.9E+02 0.0062 22.3 8.1 50 67-118 41-92 (268)
77 PF06757 Ins_allergen_rp: Inse 29.7 1.9E+02 0.004 21.4 5.6 48 6-53 107-155 (179)
78 PF07023 DUF1315: Protein of u 29.6 52 0.0011 22.4 2.3 20 7-26 2-21 (93)
79 PF07022 Phage_CI_repr: Bacter 28.3 38 0.00083 20.9 1.4 49 31-81 3-53 (66)
80 COG3139 Uncharacterized protei 27.0 74 0.0016 21.2 2.6 21 6-26 3-23 (90)
81 PF08060 NOSIC: NOSIC (NUC001) 26.8 92 0.002 18.5 2.8 30 44-73 10-39 (53)
82 PRK10548 flagellar biosynthesi 26.5 2.3E+02 0.005 19.9 5.3 52 12-63 55-108 (121)
83 PRK09636 RNA polymerase sigma 26.2 3.3E+02 0.0071 21.5 6.8 11 7-17 110-120 (293)
84 PF08250 Sperm_act_pep: Sperm- 26.1 33 0.00072 13.8 0.5 7 85-91 3-9 (10)
85 PRK05182 DNA-directed RNA poly 25.7 77 0.0017 26.0 3.1 57 23-80 249-305 (310)
86 PF15573 Imm27: Immunity prote 25.4 1.3E+02 0.0028 24.0 4.1 41 15-55 17-60 (259)
87 PRK07417 arogenate dehydrogena 25.4 3.3E+02 0.0072 21.3 7.0 24 32-55 249-272 (279)
88 PRK05377 fructose-1,6-bisphosp 25.4 1.7E+02 0.0038 24.0 5.0 42 64-112 120-161 (296)
89 COG1867 TRM1 N2,N2-dimethylgua 25.2 3E+02 0.0066 23.5 6.5 48 59-113 327-375 (380)
90 COG1916 Uncharacterized homolo 25.1 1.9E+02 0.0041 24.6 5.3 63 18-81 48-113 (388)
91 TIGR02049 gshA_ferroox glutama 25.1 85 0.0019 26.8 3.2 31 103-141 237-268 (403)
92 PF08006 DUF1700: Protein of u 24.9 2.8E+02 0.0061 20.3 7.0 52 3-54 7-64 (181)
93 PF06757 Ins_allergen_rp: Inse 24.5 2.9E+02 0.0064 20.3 7.5 99 4-103 6-118 (179)
94 TIGR02027 rpoA DNA-directed RN 24.3 88 0.0019 25.5 3.2 56 24-80 236-291 (297)
95 COG1514 LigT 2'-5' RNA ligase 24.2 1.5E+02 0.0032 22.3 4.2 64 54-117 39-111 (180)
96 KOG1201 Hydroxysteroid 17-beta 23.5 1.7E+02 0.0037 24.1 4.6 30 84-113 41-84 (300)
97 PRK00068 hypothetical protein; 23.4 1.7E+02 0.0037 28.1 5.1 27 32-58 938-964 (970)
98 PHA02599 dsbA double-stranded 23.4 2.4E+02 0.0053 19.0 6.2 62 14-75 12-88 (91)
99 PF11126 Phage_DsbA: Transcrip 23.3 1E+02 0.0023 19.7 2.7 34 42-75 33-66 (69)
100 KOG2581 26S proteasome regulat 22.3 5.4E+02 0.012 22.6 8.2 34 60-96 386-420 (493)
101 smart00345 HTH_GNTR helix_turn 22.0 1.2E+02 0.0025 17.2 2.7 35 54-90 23-57 (60)
102 PF08002 DUF1697: Protein of u 21.5 3.1E+02 0.0067 19.5 7.6 59 67-136 20-78 (137)
103 PRK09213 pur operon repressor; 21.4 4.4E+02 0.0095 21.2 7.8 49 67-117 43-93 (271)
104 TIGR02066 dsrB sulfite reducta 20.7 2.1E+02 0.0045 23.8 4.7 44 66-112 44-87 (341)
105 PF07887 Calmodulin_bind: Calm 20.3 1.7E+02 0.0037 24.1 4.0 62 11-77 158-224 (299)
106 smart00088 PINT motif in prote 20.1 1.6E+02 0.0034 18.6 3.2 42 56-100 29-70 (88)
107 smart00753 PAM PCI/PINT associ 20.1 1.6E+02 0.0034 18.6 3.2 42 56-100 29-70 (88)
No 1
>PLN02865 galactokinase
Probab=100.00 E-value=1.3e-35 Score=249.26 Aligned_cols=144 Identities=73% Similarity=1.189 Sum_probs=137.1
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCC
Q 032251 1 MAKEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 80 (144)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~G 80 (144)
++.+++.+++..|++..++|++|+++|+.||.+++.+|+++|++.||++|++||.|+|++|++||||+|.|++.+++..|
T Consensus 280 ~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~G 359 (423)
T PLN02865 280 VEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPG 359 (423)
T ss_pred CCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcCC
Confidence 35678888888899999999999999999999999999999999999999999999999999999999999999998669
Q ss_pred CceeEeecCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 81 VFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 81 a~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
++|+||||||||||+++|++++.+++++++|.+.|++++|++.++++.++.+|+++|++|++++
T Consensus 360 a~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 360 VYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred CeEEEEeccCCccEEEEEEchhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEecCCCcccC
Confidence 9999999999999999999999999999999999999988888888999999999999999874
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-35 Score=242.89 Aligned_cols=137 Identities=36% Similarity=0.560 Sum_probs=129.0
Q ss_pred CCHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhC
Q 032251 1 MAKEVYEAHKNEL--EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRA 78 (144)
Q Consensus 1 ~~~~~~~~~~~~l--~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~ 78 (144)
++..+|+++.+.+ ++..++|++|++.|++|+.+++.||+++|+.+||++|+.||.|||++|+|||||+|+|++.|+..
T Consensus 251 ~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~ 330 (390)
T COG0153 251 VTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAA 330 (390)
T ss_pred cCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHc
Confidence 3567788888877 57899999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCceeEeecCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 79 PGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 79 ~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
.|++|+||||||||||+|+|++.+.++++.+.+.+.|++. +|+++.+|+++|++|++++
T Consensus 331 ~G~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~-------~g~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 331 GGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKV-------TGLKAAFYVVEASQGAGVC 389 (390)
T ss_pred CCcccceecCCCCCceEEEEechhhHHHHHHHHHHhHHhh-------cCccccEEEEeccCCcccc
Confidence 8889999999999999999999999999999999999986 6999999999999999864
No 3
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=1.1e-32 Score=233.74 Aligned_cols=131 Identities=21% Similarity=0.308 Sum_probs=121.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCC
Q 032251 7 EAHKNELEPTLAKRAEHYFTENRRVAKGLEAWK-------SGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAP 79 (144)
Q Consensus 7 ~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~-------~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~ 79 (144)
..+++.|++..++|++|+++|+.||.+++++|+ .+|++.||++|++||.+|+++|+|||||+|.|++.+.+..
T Consensus 319 ~~~~~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~ 398 (468)
T PTZ00290 319 ESCKPLMTPGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEK 398 (468)
T ss_pred HHhhhcCCHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Confidence 367788899999999999999999999999995 5669999999999999999999999999999999875547
Q ss_pred CCceeEeecCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 80 GVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 80 Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
|++|+||||||||||+|+|++++..+++++++.+.|.++ ||..+.+|+++|++|++++
T Consensus 399 G~~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~-------~g~~~~~~~~~~~~Ga~~~ 456 (468)
T PTZ00290 399 GVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKFKAR-------FGVENDVYPVVAGDGAFVV 456 (468)
T ss_pred CCcEEEEecCCCceEEEEEechhhHHHHHHHHHHHHHHh-------hCCCCcEEEEecCCCcEEE
Confidence 999999999999999999999999999999999999885 7999999999999999863
No 4
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=8.3e-32 Score=223.88 Aligned_cols=136 Identities=30% Similarity=0.444 Sum_probs=126.4
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCC
Q 032251 2 AKEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV 81 (144)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga 81 (144)
+.+++.+..+.|++..++|+.|++.|+.|+.+++++|+++|++.||++|+++|.+||+.|+|||||+|.|++.+++..|+
T Consensus 246 ~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga 325 (382)
T PRK05101 246 TLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGD 325 (382)
T ss_pred CHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCC
Confidence 45667777788999999999999999999999999999999999999999999999988999999999999999984498
Q ss_pred -ceeEeecCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 82 -FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 82 -~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
+|+||||||||||+|+|++++.++++.+.|.+.|+++ ++..+.+|+++|++|++++
T Consensus 326 ~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 382 (382)
T PRK05101 326 QGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAK-------TGLKETFYVCKASQGAGQC 382 (382)
T ss_pred cceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHh-------hCCCCeEEEEecCCCcccC
Confidence 4789999999999999999999999999999999885 6899999999999999874
No 5
>PRK05322 galactokinase; Provisional
Probab=99.97 E-value=2.1e-30 Score=215.82 Aligned_cols=136 Identities=35% Similarity=0.538 Sum_probs=126.7
Q ss_pred CHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCC
Q 032251 2 AKEVYEAHKNELE-PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 80 (144)
Q Consensus 2 ~~~~~~~~~~~l~-~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~G 80 (144)
+.++++.+.+.++ +..++|+.|++.|+.|+..++.+|+++|++.||++|+++|.+|++.|++|+|++|.|++.+++..|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~G 330 (387)
T PRK05322 251 TEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEG 330 (387)
T ss_pred CHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCC
Confidence 3567777777784 899999999999999999999999999999999999999999999999999999999999974489
Q ss_pred CceeEeecCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 81 VFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 81 a~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
++|+||||||+|||+++|++.+..+++.+.|.+.|+++ +|..+.+|+++|++|++++
T Consensus 331 a~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 331 VLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEK-------IGYAASFYVAEIGDGAREL 387 (387)
T ss_pred ccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCcccC
Confidence 99999999999999999999999999999999999985 7999999999999999874
No 6
>PRK00555 galactokinase; Provisional
Probab=99.97 E-value=6.7e-30 Score=211.29 Aligned_cols=133 Identities=32% Similarity=0.385 Sum_probs=123.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCce
Q 032251 4 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFG 83 (144)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~G 83 (144)
+++......+++..++|+.|+++|+.|+..++.+|.++|++.||++|+++|.++|+.|+||+|++|.|++.+++ .|++|
T Consensus 230 ~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~-~Ga~G 308 (363)
T PRK00555 230 RGLAALGAIADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIADSAVR-AGALG 308 (363)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHh-cCCeE
Confidence 34445555567888999999999999999999999999999999999999999998899999999999999998 89999
Q ss_pred eEeecCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 84 ARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 84 akisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
+||||||||||+++|++++..+++.+.+.+.|+++ ++.+|.+|+++|++|++++
T Consensus 309 aklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 309 ARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTA-------GYPEPAVSRTYAAPGAGEC 362 (363)
T ss_pred EEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHc-------cCCCCcEEEEecCCCcccC
Confidence 99999999999999999988999999999999985 6889999999999999875
No 7
>PLN02521 galactokinase
Probab=99.97 E-value=2.9e-30 Score=220.68 Aligned_cols=128 Identities=26% Similarity=0.435 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecC
Q 032251 15 PTLAKRAEHYFTENRRVAKGLEAWKSG-----NSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 89 (144)
Q Consensus 15 ~~~~~r~~~~v~e~~r~~~~~~aL~~~-----d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGa 89 (144)
+..++|++|+++|+.||.+++++|+++ +++.||++|++||.++++.|+||||++|.|++.+++ .|++|+|||||
T Consensus 359 ~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~-~Ga~GaRltGa 437 (497)
T PLN02521 359 FKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRD-NGALGARLTGA 437 (497)
T ss_pred hHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHh-cCCcEEEECCC
Confidence 478999999999999999999999886 399999999999999999999999999999999998 89999999999
Q ss_pred CCCceeEEEeccccHHHHHHHHHHHhHhhch--hHhhhcCCCceEEEeecCCCeec
Q 032251 90 GFRGCCLALVDADRAEEAASYVRSEYFELQP--ELASQLNADSAVLICKPGDCARV 143 (144)
Q Consensus 90 G~GG~vial~~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~~~~~~~~~Ga~~ 143 (144)
|||||+|+|++++..+++++.+.+.|+++.| +-++.++..+.+|+++|++||++
T Consensus 438 G~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~ 493 (497)
T PLN02521 438 GWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAI 493 (497)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCCCceE
Confidence 9999999999999999999999999998742 23344688999999999999986
No 8
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.97 E-value=4.5e-30 Score=213.40 Aligned_cols=130 Identities=27% Similarity=0.399 Sum_probs=120.1
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEee
Q 032251 8 AHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFS 87 (144)
Q Consensus 8 ~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~Gakis 87 (144)
++++.|++..++|+.|++.|+.||.+++.+|.++|++.||++|+++|.+|+++|++|||++|++++.+...+|++|+|||
T Consensus 257 ~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGaklt 336 (386)
T TIGR00131 257 ARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMT 336 (386)
T ss_pred hhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 44667788889999999999999999999999999999999999999999998999999999999886444899999999
Q ss_pred cCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 88 GAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 88 GaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
|||||||+|+|++++.++++.++|.+.|+++ +|.++.+|++++++|++++
T Consensus 337 GaG~GG~vial~~~~~~~~v~~~~~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 386 (386)
T TIGR00131 337 GAGFGGCTVHLVPNENVDKVRQAVADKYPKK-------TGLELTFYVIVSKPGAGSC 386 (386)
T ss_pred cCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------hCCCCcEEEEEECCCcCCC
Confidence 9999999999999999999999999999764 6999999999999999863
No 9
>PRK03817 galactokinase; Provisional
Probab=99.95 E-value=4.5e-27 Score=193.12 Aligned_cols=127 Identities=34% Similarity=0.485 Sum_probs=119.1
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecC
Q 032251 10 KNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 89 (144)
Q Consensus 10 ~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGa 89 (144)
...+++..++|+.|++.|++|+..++.+|+++|++.||++|+++|.++++.|++|+|++|+|++.+++ .|++|+|||||
T Consensus 224 ~~~l~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~-~GalGaklsGa 302 (351)
T PRK03817 224 LSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYEVSCEELDFFVEFALE-LGAYGARLTGA 302 (351)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-cCCCEEEEecC
Confidence 34677888999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred CCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 90 GFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 90 G~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
|||||+++|++++..+++++.+.+.|... ++..+.+|++.+++|++++
T Consensus 303 G~Gg~vlal~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~G~~~~ 350 (351)
T PRK03817 303 GFGGSAIALVDKGKFESIGEELLEEYKKR-------FGIDPKYFVVESSDGVRKI 350 (351)
T ss_pred CCCeEEEEEEchHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCceeC
Confidence 99999999999988999999999999774 6889999999999999875
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.5e-21 Score=162.56 Aligned_cols=127 Identities=33% Similarity=0.506 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeec
Q 032251 15 PTLAKRAEHYFTENRRVAKGLEAWKSGN------SQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 88 (144)
Q Consensus 15 ~~~~~r~~~~v~e~~r~~~~~~aL~~~d------~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisG 88 (144)
-+.++|++|++.|..|+.++...+.+++ +..||+||++||.|.+..|++||||+|+|+++++. +|.+|+|+||
T Consensus 353 ~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala-~g~~gaRlTG 431 (489)
T KOG0631|consen 353 KKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALA-NGGVGARLTG 431 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHh-cCCccceeec
Confidence 3578899999999999999988887643 66789999999999999999999999999999999 8999999999
Q ss_pred CCCCceeEEEeccccHHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEeecCCCeec
Q 032251 89 AGFRGCCLALVDADRAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGDCARV 143 (144)
Q Consensus 89 aG~GG~vial~~~~~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~~Ga~~ 143 (144)
+|||||.+++++.+..+.+.+++.+.|+++. |.+.+.- .+..++.++|+.|+.+
T Consensus 432 aGwGGc~v~lvp~d~~~~~~~~~~~~~Y~ka~~~~~~~~-~k~~~~~skp~~g~~l 486 (489)
T KOG0631|consen 432 AGWGGCTVALVPADLVDFAVAALKEIYYEKAYPKFAQDE-LKKALIVSKPAAGVLL 486 (489)
T ss_pred cccccceeeeccccchHHHHHhhhhhhhccccchhhhch-hhceEEEecCchhhhh
Confidence 9999999999998999999999887777665 6666553 5666777889988764
No 11
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.72 E-value=6.9e-17 Score=131.07 Aligned_cols=83 Identities=23% Similarity=0.346 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHH
Q 032251 30 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAAS 109 (144)
Q Consensus 30 r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~ 109 (144)
.+.++..+|.++|.+.||++|+.+|..|.. ++||+|++|+|++.+++ .|++|||+||||+|||+|+|++..+. .+
T Consensus 212 ~~~~a~~al~~~d~e~lgelm~~nq~LL~~-LgVs~~~L~~lv~~a~~-~Ga~gaKlTGAGgGGc~IaL~~~~~~---~~ 286 (307)
T COG1577 212 LVQEAEAALQTGDFEELGELMNINQGLLKA-LGVSTPELDELVEAARS-LGALGAKLTGAGGGGCIIALAKNEEI---AE 286 (307)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHh-cCcCcHHHHHHHHHHHh-cCccccccccCCCCceEEEEeccchH---HH
Confidence 356788999999999999999999976654 99999999999999999 99999999999999999999986331 34
Q ss_pred HHHHHhHh
Q 032251 110 YVRSEYFE 117 (144)
Q Consensus 110 ~l~~~y~~ 117 (144)
.+...+.+
T Consensus 287 ~l~~~~~~ 294 (307)
T COG1577 287 TLSNRLEK 294 (307)
T ss_pred HHHHHHHh
Confidence 44444444
No 12
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.71 E-value=5.1e-17 Score=107.47 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=72.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHH-hhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEe-ccccHHHHHHHH
Q 032251 34 GLEAWKSGNSQDFGKLISASGLS-SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYV 111 (144)
Q Consensus 34 ~~~aL~~~d~~~lg~lm~~s~~~-lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~-~~~~~~~~~~~l 111 (144)
++++|.++|++.|+++|+++|.+ ......+.+|+++.+++.+++ .|++|++|||+|+|||+++|+ +++.++++.+.|
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEE-NGALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-TTESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHH-CCCCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 46899999999999999999874 222466779999999999998 899999999999999999999 666799999999
Q ss_pred HHHhH
Q 032251 112 RSEYF 116 (144)
Q Consensus 112 ~~~y~ 116 (144)
++.|+
T Consensus 80 ~~~~~ 84 (85)
T PF08544_consen 80 REHYK 84 (85)
T ss_dssp HHHTH
T ss_pred HHhCC
Confidence 98775
No 13
>PTZ00298 mevalonate kinase; Provisional
Probab=99.71 E-value=3.8e-16 Score=127.58 Aligned_cols=87 Identities=26% Similarity=0.323 Sum_probs=78.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecc-ccHHHHH
Q 032251 30 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAA 108 (144)
Q Consensus 30 r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~~ 108 (144)
.+.++..+|.++|++.++++|+++|..++. +++++|++|++++.+++ .|++|+||||+|+|||+++|++. +.++++.
T Consensus 226 ~~~~~~~al~~~d~~~lg~~m~~~~~~l~~-~~v~~p~l~~l~~~~~~-~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~ 303 (328)
T PTZ00298 226 CVSEAKEALQKGNLFRVGELMNANHDLCQK-LTVSCRELDSIVQTCRT-YGALGAKMSGTGRGGLVVALAASEDQRDAIA 303 (328)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHh-CCCceeEeccCCCCeEEEEEecchhhHHHHH
Confidence 456788899999999999999999988885 88999999999999998 89999999999999999999975 5688899
Q ss_pred HHHHHHhHhh
Q 032251 109 SYVRSEYFEL 118 (144)
Q Consensus 109 ~~l~~~y~~~ 118 (144)
+.+++.|...
T Consensus 304 ~~l~~~~~~~ 313 (328)
T PTZ00298 304 KAVRARCPEA 313 (328)
T ss_pred HHHHHHhhhc
Confidence 9998887663
No 14
>PRK03926 mevalonate kinase; Provisional
Probab=99.67 E-value=3e-15 Score=120.40 Aligned_cols=96 Identities=25% Similarity=0.392 Sum_probs=81.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHH
Q 032251 32 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYV 111 (144)
Q Consensus 32 ~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l 111 (144)
..+..+|.++|++.|+++|+.+|. +.+.+++++|+++++++.+++ .|++|+||||+|+|||++++++++..+++.+.+
T Consensus 202 ~~~~~al~~~d~~~l~~~~~~~~~-~~~~~~~~~p~l~~l~~~~~~-~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~ 279 (302)
T PRK03926 202 EKGEELILSGDYVSLGELMNINQG-LLDALGVSTKELSELIYAART-AGALGAKITGAGGGGCMVALAAPEKQSEVATAI 279 (302)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHh-CCCceeeeccCCCCCEEEEEeccccHHHHHHHH
Confidence 455688899999999999999995 456689999999999999998 899999999999999999999888888777777
Q ss_pred HHHhHhhchhHhhhcCCCceEEEeec-CCCeec
Q 032251 112 RSEYFELQPELASQLNADSAVLICKP-GDCARV 143 (144)
Q Consensus 112 ~~~y~~~~~~~~~~~~~~~~~~~~~~-~~Ga~~ 143 (144)
.+. + ..++++++ .+|+++
T Consensus 280 ~~~------------~--~~~~~~~~~~~G~~i 298 (302)
T PRK03926 280 KIA------------G--GKPIITKITDEGLRI 298 (302)
T ss_pred Hhc------------C--CeEEEEecCCCeeEE
Confidence 642 1 45688886 568876
No 15
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.66 E-value=7e-16 Score=122.15 Aligned_cols=68 Identities=26% Similarity=0.407 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEE
Q 032251 29 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 98 (144)
Q Consensus 29 ~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial 98 (144)
.++.++..+|.++|++.||++|+++|..+++ +++|+|++|+|++.+++ .|++|+||||||+|||+|+|
T Consensus 206 ~~~~~~~~al~~~d~~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~-~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ELTLEAKAALQDGDVESLGELMNINQGLLKA-LGVSHPKLDQLVETARK-AGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-CCCceeeeccCCCCceEEeC
Confidence 4667889999999999999999999988875 89999999999999998 89999999999999999986
No 16
>PLN02677 mevalonate kinase
Probab=99.65 E-value=2.7e-15 Score=125.36 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=78.5
Q ss_pred HHHHHHHHhC---------CCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecc
Q 032251 31 VAKGLEAWKS---------GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 101 (144)
Q Consensus 31 ~~~~~~aL~~---------~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~ 101 (144)
+.++..+|.+ +|++.|+++|+.+|..|.. ++||+|.+|.+++.+++ .| +|||+||||+|||+|+|+++
T Consensus 272 ~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~-LGVS~~~le~iv~~a~~-~~-~~AKlTGAGgGGC~IaL~~~ 348 (387)
T PLN02677 272 SEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQC-MGVSHSSIETVLRTTLK-YK-LVSKLTGAGGGGCVLTLLPT 348 (387)
T ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-cC-CccccccCCCCCEEEEEccc
Confidence 4578888887 5699999999999988875 99999999999999998 65 89999999999999999986
Q ss_pred ccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCCeec
Q 032251 102 DRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 143 (144)
Q Consensus 102 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 143 (144)
+..++.++.+.+++.+. |+ ..|.++ .+.|+.+
T Consensus 349 ~~~~~~~~~l~~~l~~~--------G~--~~~~~~~g~~Gv~~ 381 (387)
T PLN02677 349 LLSGTVVDKVIAELESS--------GF--QCFTAGIGGNGVQI 381 (387)
T ss_pred ccchhHHHHHHHHHHHC--------CC--eEEEEEeCCCceEE
Confidence 43344445555555553 53 557766 5666654
No 17
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.60 E-value=1.6e-14 Score=119.50 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=68.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhhc-----cCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecccc-H
Q 032251 31 VAKGLEAWKSGNSQDFGKLISASGLSSIYN-----YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-A 104 (144)
Q Consensus 31 ~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~-----~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~ 104 (144)
+.++.++|.++|++.||++|+.+|..|+.. ++||+|++++|++.+++ .|+ |+|+||||+|||+|+|++++. .
T Consensus 258 ~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~-~ga-~aKlsGAGgGg~~ial~~~~~~~ 335 (358)
T TIGR01220 258 VESAITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEA-YGG-AAKPSGAGGGDCGIAILDAEADI 335 (358)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhh-cCc-eecCCCCCCcCEEEEEeCCchhH
Confidence 457899999999999999999999988862 49999999999999998 897 999999999999999997543 4
Q ss_pred HHHHHHHH
Q 032251 105 EEAASYVR 112 (144)
Q Consensus 105 ~~~~~~l~ 112 (144)
+++..+|+
T Consensus 336 ~~~~~~~~ 343 (358)
T TIGR01220 336 THVRQRWE 343 (358)
T ss_pred HHHHHHHH
Confidence 44444444
No 18
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.59 E-value=2.4e-14 Score=129.95 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=70.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhhc-cCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEec-cccHHHHH
Q 032251 31 VAKGLEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD-ADRAEEAA 108 (144)
Q Consensus 31 ~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~-~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~-~~~~~~~~ 108 (144)
+.++..+|.++|++.||++|+.+|..++.. .+||+|++|+|++.+++ |++|+|+||||+|||+|++++ ++..+++.
T Consensus 868 a~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~--gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~ 945 (974)
T PRK13412 868 ALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD--YTLGYKLPGAGGGGYLYMVAKDPGAAERIR 945 (974)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc--CCcEEEecccCcccEEEEEECChhhHHHHH
Confidence 467899999999999999999999877752 39999999999999964 799999999999999999995 55577777
Q ss_pred HHHHH
Q 032251 109 SYVRS 113 (144)
Q Consensus 109 ~~l~~ 113 (144)
+.+++
T Consensus 946 ~~L~~ 950 (974)
T PRK13412 946 KILTE 950 (974)
T ss_pred HHHHh
Confidence 77765
No 19
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.59 E-value=2.4e-14 Score=114.69 Aligned_cols=84 Identities=19% Similarity=0.312 Sum_probs=77.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhh-ccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHH
Q 032251 30 RVAKGLEAWKSGNSQDFGKLISASGLSSIY-NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 108 (144)
Q Consensus 30 r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~-~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~ 108 (144)
.+.++.++|-++|+..||++|+++|+..+. .-++|+|.+|+|.+.|++ +||+|+|++|||.||+++.+++|.+.+.++
T Consensus 229 ~A~~~~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~-~GA~~gKl~GaG~gGFllf~~~p~k~~~l~ 307 (333)
T COG2605 229 LAYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALK-NGAYGGKLSGAGGGGFLLFFCDPSKRNELA 307 (333)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHh-cCchhceeeccCCccEEEEEeCccchHHHH
Confidence 345788999999999999999999997775 378999999999999999 999999999999999999999999999999
Q ss_pred HHHHHH
Q 032251 109 SYVRSE 114 (144)
Q Consensus 109 ~~l~~~ 114 (144)
++|..+
T Consensus 308 r~l~~~ 313 (333)
T COG2605 308 RALEKE 313 (333)
T ss_pred HHHHHh
Confidence 998864
No 20
>PLN02451 homoserine kinase
Probab=99.34 E-value=3e-11 Score=100.53 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccc
Q 032251 25 FTENRRVAKGLEAWKSGNSQDFGKLISAS--GLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 102 (144)
Q Consensus 25 v~e~~r~~~~~~aL~~~d~~~lg~lm~~s--~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~ 102 (144)
+.+..++...+.+|.++|++.++++|+.. |+.. ...++|+++++++.+++ .|++|++|||+| +|+++|++.+
T Consensus 255 v~~~~~~~~l~~al~~~d~~~l~~~m~nD~~~e~~---r~~~~P~l~~l~~~~~~-~GA~ga~mSGSG--ptvfal~~~~ 328 (370)
T PLN02451 255 VWNCSQAAALVAAILQGDAVLLGEALSSDKIVEPT---RAPLIPGMEAVKKAALE-AGAYGCTISGAG--PTAVAVIDDE 328 (370)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhHHH---HhhhCccHHHHHHHHHH-CCCeEEEEEccc--hheEEEEcCH
Confidence 33456666778999999999999999854 3333 34459999999999998 899999999999 8999999754
Q ss_pred -cHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecC-CCeec
Q 032251 103 -RAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 143 (144)
Q Consensus 103 -~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~-~Ga~~ 143 (144)
.++++.+++++.|.+. .+..+.++++++. .|+++
T Consensus 329 ~~a~~i~~~l~~~~~~~-------~~~~~~~~~~~~d~~Ga~v 364 (370)
T PLN02451 329 EKGEEVGERMVEAFRKA-------GNLKATASVKKLDRVGARL 364 (370)
T ss_pred HHHHHHHHHHHHHHHHh-------cCCCceEEEeccCCCCeEE
Confidence 6888999999888663 2477899999966 49876
No 21
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.34 E-value=2.1e-11 Score=99.82 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC----CH--H-HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCC
Q 032251 19 KRAEHYFTENRRVAKGLEAWKSG----NS--Q-DFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGF 91 (144)
Q Consensus 19 ~r~~~~v~e~~r~~~~~~aL~~~----d~--~-~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~ 91 (144)
+-+...+.+.. .++...|.++ +. + .|.++|..||..|. .+|||+|.+|.++..+.+ .| +.+|+||||+
T Consensus 262 ~~i~~aid~is--~ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~-alGVsH~~le~v~~~t~k-~g-i~sKLTGAGg 336 (397)
T KOG1511|consen 262 KAIFDAIDEIS--LEAVWILQRENDEFSSPKEQKLEELIRINQDLLD-ALGVSHPSLELVCTTTRK-LG-IHSKLTGAGG 336 (397)
T ss_pred HHHHHHHHHHH--HHHHHHHhcccccCCCcHHHHHHHHHHHhHHHHH-HhCCCcHHHHHHHHHHHH-hC-cceecccCCC
Confidence 44444444433 4566666631 22 2 59999999997664 599999999999999998 88 7789999999
Q ss_pred CceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCCeec
Q 032251 92 RGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 143 (144)
Q Consensus 92 GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 143 (144)
|||+|+|++++...+.++.+++....+ | ..+|.+. -+.|+++
T Consensus 337 GGc~itlL~~~~~qe~i~~~ke~L~s~--------g--f~v~~t~lGG~G~~v 379 (397)
T KOG1511|consen 337 GGCVITLLKPGTEQEQIDKWKEELESH--------G--FEVFETELGGPGVSV 379 (397)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHhc--------C--cceeeccCCCCceEE
Confidence 999999999998777788888776653 3 4567766 5566665
No 22
>PRK01212 homoserine kinase; Provisional
Probab=99.33 E-value=1.5e-11 Score=98.96 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCC-CChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecc
Q 032251 23 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 101 (144)
Q Consensus 23 ~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~v-s~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~ 101 (144)
+.+.+..++..+..+|.++|++.+++.|+ +.+++.+.. .+|+++++++.+++ .|++|++|||+| +|+++|+++
T Consensus 193 ~~~~~~~~~~~l~~al~~~d~~~~~~~~~---~~~~~~~~~~~~p~~~~i~~~~~~-~Ga~g~~~SGsG--ptv~~l~~~ 266 (301)
T PRK01212 193 DAVFNSSRAALLVAALYTGDYELAGRAMK---DVLHEPYRAKLIPGFAEVRQAALE-AGALGAGISGAG--PTVFALCDK 266 (301)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHhc---hhheHHhHHhhCCCHHHHHHHHHH-CCCeEEEEEchh--hheeEEecc
Confidence 44556677778889999999999999984 233333422 37999999999998 899999999998 999999987
Q ss_pred ccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCC-CeecC
Q 032251 102 DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD-CARVI 144 (144)
Q Consensus 102 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~-Ga~~~ 144 (144)
+..+++.+.+.+.| .. +..+.+++++++. |+++.
T Consensus 267 ~~~~~~~~~l~~~~-~~--------~~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 267 EDAEKVADALQKAF-LQ--------GIEGFVHVLRLDTAGARVL 301 (301)
T ss_pred ccHHHHHHHHHHhh-cc--------CCCeEEEEeccCCCceEeC
Confidence 65678888888766 21 6678999999665 88763
No 23
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.31 E-value=2.5e-11 Score=98.20 Aligned_cols=109 Identities=25% Similarity=0.282 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCC-ChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEe
Q 032251 21 AEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 99 (144)
Q Consensus 21 ~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs-~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~ 99 (144)
..+.+.+..++.-++.+|.++|.+.+..+|. +-++++|+.+ .|.++++.+.+++ .|+||+-+||+| +++++++
T Consensus 187 ~~daV~n~s~~a~lv~al~~~~~~l~~~~~~---D~ihepyR~~L~P~~~~v~~~a~~-~gA~g~~lSGAG--PTi~al~ 260 (299)
T COG0083 187 RKDAVFNLSRAALLVAALLEGDPELLRAMMK---DVIHEPYRAKLVPGYAEVREAALE-AGALGATLSGAG--PTVFALA 260 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHhc---cccchhhhhhhCccHHHHHHHHhh-CCceEEEEecCC--CeEEEEe
Confidence 4789999999999999999999777777777 4566677777 8999999999998 999999999999 9999999
Q ss_pred ccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCCeecC
Q 032251 100 DADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARVI 144 (144)
Q Consensus 100 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~~ 144 (144)
++...+.+.+.+++.|.+ +....++++. +++|++++
T Consensus 261 ~~~~~e~~~~~~~~~~~~---------~~~~~~~~~~~~~~G~~~v 297 (299)
T COG0083 261 DESDAEKAAALLEELYEQ---------GIKGRVHILALDSDGARVV 297 (299)
T ss_pred ccchhhHHHHHHHHHHHh---------CCcceEEEEeecCCcceEe
Confidence 887445555555555544 5667777766 88897653
No 24
>PTZ00299 homoserine kinase; Provisional
Probab=99.29 E-value=1.6e-11 Score=100.98 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=95.6
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCC-C-ChHHHHHHHHHHhCCCCceeE
Q 032251 8 AHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-G-SEPLIQLNEILQRAPGVFGAR 85 (144)
Q Consensus 8 ~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~v-s-~peld~l~~~a~~~~Ga~Gak 85 (144)
.++..||+++- ..+.+.+..|+...+.+|.++|++.+.. |. +.+++.|+. . .|+++++.+.+++ .|++|+.
T Consensus 188 ~aR~vLP~~v~--~~dav~n~~~~~~lv~al~~~d~~ll~~-~~---D~lhep~R~~~liP~~~~v~~~~~~-~Ga~g~~ 260 (336)
T PTZ00299 188 VTRNLIPTSVS--LEDAVFNISRTSILVLALSTGDLRMLKS-CS---DKLHEQQRSDALFPHFRPCVKAARE-AGAHYAF 260 (336)
T ss_pred HHHhhCcccCc--HHHHHHhhhHHHHHHHHHHhCCHHHHHh-ch---hcccCcccccccCccHHHHHHHHHH-CCCeEEE
Confidence 44555554431 2378888898888999999999999865 42 456667775 5 8999999999998 8999999
Q ss_pred eecCCCCceeEEEecc------------ccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCC-Ceec
Q 032251 86 FSGAGFRGCCLALVDA------------DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD-CARV 143 (144)
Q Consensus 86 isGaG~GG~vial~~~------------~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~-Ga~~ 143 (144)
|||+| +++++|++. ...+++.++|.+.|.+ .|..+++++++++. |+++
T Consensus 261 lSGSG--PTv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~G~~~ 321 (336)
T PTZ00299 261 LSGAG--PSVCALVGGRHGDPLTQPREERKAESVAEAMIKAAEA--------VGVAGRVIITQPSDQGVHL 321 (336)
T ss_pred EEchh--hhheEEeccccccccccccchhHHHHHHHHHHHHHHH--------cCCceEEEEccCCCCCcEE
Confidence 99999 999999972 2367899999988876 38899999999766 9876
No 25
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.09 E-value=1.2e-09 Score=88.24 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCC-CChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecc
Q 032251 23 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 101 (144)
Q Consensus 23 ~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~v-s~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~ 101 (144)
+.+.+..++.....+|.+++++ +++.+.+.+ +++.|.. .+|+++++++.+++ .|++|++|||+| ||+++|+++
T Consensus 193 ~~v~~~~~~~~l~~al~~~~~~-l~~~~~~d~--l~e~~~~~l~p~l~~i~~~~~~-~Ga~g~~lSGsG--ptv~al~~~ 266 (302)
T TIGR00191 193 DLVFNLSHLAGLVHAIYQKKPD-LGAIMMKDR--IHQPYRESLIPNLFKIKQAALE-KGAYGITISGSG--PTILAMADE 266 (302)
T ss_pred HHHHHHHHHHHHHHHHHcCCHH-HHHHHcccc--cchhhHhhhCCCHHHHHHHHHH-CCCeEEEEEchh--hhheEEecc
Confidence 4455566666677889888765 566554432 3333333 28999999999998 899999999999 999999987
Q ss_pred ccHHH-HHHHHHHHhHhhchhHhhhcCCCceEEEeecCC-Ceec
Q 032251 102 DRAEE-AASYVRSEYFELQPELASQLNADSAVLICKPGD-CARV 143 (144)
Q Consensus 102 ~~~~~-~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~-Ga~~ 143 (144)
+...+ +.+.++.. .. .+.++.++++++.. |+++
T Consensus 267 ~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 267 EFAEQKEQDLLEVL-HK--------QGIEGTVHVLDFDNDGARV 301 (302)
T ss_pred hhhHHHHHHHHHHH-Hh--------cCCCeEEEEcccCCCCeEe
Confidence 66444 33444433 32 26678999999655 9876
No 26
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.98 E-value=3.7e-09 Score=85.28 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCC-ChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccc-cHHH
Q 032251 29 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEE 106 (144)
Q Consensus 29 ~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs-~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~~ 106 (144)
.++..+..++.++|++.+++.|.. .+ +.+.++ +|+++++++.+++ .|++|++|||+| +++++|++++ .+++
T Consensus 196 ~~~~~~~~al~~~d~~~l~~~~~n---~l-e~~~~~~~p~l~~l~~~~~~-~Galga~lSGsG--~tv~~l~~~~~~~~~ 268 (300)
T PRK03188 196 GEPDPLLAALRAGDPAQLAPLLGN---DL-QAAALSLRPSLRRTLRAGEE-AGALAGIVSGSG--PTCAFLCADADSAVD 268 (300)
T ss_pred ccHHHHHHHHHcCCHHHHHHHhhC---cC-HHHHHHhCchHHHHHHHHHH-CCCCEEEEEccc--cceEEEeCCHHHHHH
Confidence 346678899999999999999863 23 335555 9999999999998 899999999999 8899999763 3555
Q ss_pred HHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCCeecC
Q 032251 107 AASYVRSEYFELQPELASQLNADSAVLICK-PGDCARVI 144 (144)
Q Consensus 107 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~~ 144 (144)
+.+.+++ .|....+++++ ...|++|+
T Consensus 269 ~~~~l~~------------~g~~~~~~~~~~~~~~~~~~ 295 (300)
T PRK03188 269 VAAALSG------------AGVCRTVRVATGPVPGARVV 295 (300)
T ss_pred HHHHHHh------------cCcceeEEEeeccccceEec
Confidence 6555554 15456777755 67788764
No 27
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.86 E-value=1.2e-08 Score=82.76 Aligned_cols=101 Identities=22% Similarity=0.334 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHH-hCCCCceeEeecCCCCceeEEEeccc-cH
Q 032251 27 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQ-RAPGVFGARFSGAGFRGCCLALVDAD-RA 104 (144)
Q Consensus 27 e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~-~~~Ga~GakisGaG~GG~vial~~~~-~~ 104 (144)
+..+......+|.++|++.++..| |+.++....-..|++.++++.++ + .|++|+.|||+| +|+++|++.+ .+
T Consensus 207 ~~~~~~~l~~al~~~d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~-~Ga~~~~lSGsG--ptv~~l~~~~~~a 280 (312)
T PRK02534 207 QALRSGPLLQAISAKDPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSL-PGCLGTMMSGSG--PTCFALFESQEQA 280 (312)
T ss_pred cccchhHHHHhhhccCHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhc-cCCCeeEEECcC--cceEEEeCCHHHH
Confidence 344445578899999999998876 45666544445889999988887 7 899999999999 9999999764 57
Q ss_pred HHHHHHHHHHhHhhchhHhhhcCCCceEEEeec-CCCeec
Q 032251 105 EEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 143 (144)
Q Consensus 105 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~-~~Ga~~ 143 (144)
+++.+++++.|.. ....++++++ ..|+++
T Consensus 281 ~~~~~~l~~~~~~----------~~~~v~i~~~~n~G~~v 310 (312)
T PRK02534 281 EQALEQVREAFAD----------PGLDAWVCQFISHGIQL 310 (312)
T ss_pred HHHHHHHHHHhcc----------CceEEEEEEecCCCcee
Confidence 7787787765433 2247888874 448865
No 28
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.84 E-value=7.4e-09 Score=82.84 Aligned_cols=77 Identities=22% Similarity=0.239 Sum_probs=63.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCC-ChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccc-cHHHHH
Q 032251 31 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAA 108 (144)
Q Consensus 31 ~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs-~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~~~~ 108 (144)
+..+..+|.++|++.++.+|. +.+ +.++++ +|+++++++.+++ .|++|++|||+| ||+++|++.+ .++++.
T Consensus 194 ~~~~~~~l~~~d~~~~~~~~~---n~l-~~~~~~~~p~l~~l~~~~~~-~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~ 266 (286)
T PRK00128 194 TEKLIEAIEEGDYQGICANMG---NVL-ENVTLKKYPEIAKIKERMLK-FGADGALMSGSG--PTVFGLFDDESRAQRIY 266 (286)
T ss_pred hHHHHHHHhcCCHHHHHHhcc---CcH-HHHHHhhChHHHHHHHHHHh-cCCCeeEEcccC--ccEEEEeCCHHHHHHHH
Confidence 456788999999999999986 344 557776 8999999999998 899999999999 9999999764 466777
Q ss_pred HHHHHH
Q 032251 109 SYVRSE 114 (144)
Q Consensus 109 ~~l~~~ 114 (144)
+.+++.
T Consensus 267 ~~l~~~ 272 (286)
T PRK00128 267 NGLKGF 272 (286)
T ss_pred HHhHhh
Confidence 777653
No 29
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=98.77 E-value=1.7e-07 Score=76.92 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=78.3
Q ss_pred HHHHHHHH--HHHHHHhCCCHHHHHHHHHHHHH----HhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEE
Q 032251 25 FTENRRVA--KGLEAWKSGNSQDFGKLISASGL----SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 98 (144)
Q Consensus 25 v~e~~r~~--~~~~aL~~~d~~~lg~lm~~s~~----~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial 98 (144)
+.+..++. ..+.+|.++|++.|++.|++-+. .+++.|+ .|.+..+++.+.+ ++|+-|||+| ++|++|
T Consensus 214 v~~~~~~~l~~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r--~~li~~~~~~l~~---a~g~~iSGsG--PTv~al 286 (324)
T TIGR00144 214 VERICHLILMKMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQ--DPLIKRIIDSMIS---APGAGMSSFG--PTVYAV 286 (324)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcchhhhcccc--CHHHHHHHHHHHh---ccCceecCCC--CeEEEE
Confidence 35555653 35899999999999999986442 2333344 7778887777765 4899999998 999999
Q ss_pred eccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecC-CCeec
Q 032251 99 VDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 143 (144)
Q Consensus 99 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~-~Ga~~ 143 (144)
++.+ .+++.+++.+.|.+ .+..+.++++++. .|+++
T Consensus 287 ~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~n~Ga~v 323 (324)
T TIGR00144 287 TDEK-PGNIAGAVADIFGP--------YGVYGRIIVTKARNRGAFI 323 (324)
T ss_pred ecCc-hHHHHHHHHHHhhh--------CCCceEEEEEccCCCCCEe
Confidence 9754 77788888887655 3788999999976 59986
No 30
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=98.61 E-value=2.3e-07 Score=73.83 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHH
Q 032251 29 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 108 (144)
Q Consensus 29 ~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~ 108 (144)
..+.++..+++.+|+. ++|+.+|..+...++++++ +++.+++ .|++|++|||+| |||++|+++. +++.
T Consensus 181 ~~~~~~~~~~~~~~l~---~am~~n~~l~~~~lg~~~~----~i~~a~~-~Galga~lSGaG--~sv~aL~~~~--~~v~ 248 (261)
T TIGR01920 181 PVVEEAFNLALRGEYL---KAMVLNGVAYATALGYPLE----PASKALE-AGAAAAGLSGKG--PSYFALTEDP--EEAA 248 (261)
T ss_pred hHHHHHHHHHhhCCHH---HHHhhChHHhHHhhCCChH----HHHHHHH-cCCcEEeecCCC--CeEEEEeCCH--HHHH
Confidence 3445667788889886 8889888644345777664 5577887 899999999986 9999998754 5666
Q ss_pred HHHHH
Q 032251 109 SYVRS 113 (144)
Q Consensus 109 ~~l~~ 113 (144)
++|++
T Consensus 249 ~~~~~ 253 (261)
T TIGR01920 249 EALME 253 (261)
T ss_pred HHHHh
Confidence 66665
No 31
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.57 E-value=2.5e-07 Score=74.96 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCCHHHHHHHH-HHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecc-ccHHHHH
Q 032251 31 VAKGLEAWKSGNSQDFGKLI-SASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAA 108 (144)
Q Consensus 31 ~~~~~~aL~~~d~~~lg~lm-~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~~ 108 (144)
....+.+|.++|++.+...| |.- +..+..+ +|+++++.+.+++ .|++|++|||+| +||+++++. +.++++.
T Consensus 208 ~~~~~~al~~~~~~~l~~~l~ndl-e~~~~~l---~P~~~~i~~~~~~-~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~ 280 (297)
T PRK14613 208 SEDLISSLKVGDWVSLQGRLENDF-EPVAFQL---HPELGVLKDKFLE-FGSSYCSLTGSG--SSMYGLVQGLEIQEELL 280 (297)
T ss_pred HHHHHHHHHcCCHHHHHHHhcccc-hHHHHHh---CcHHHHHHHHHHH-cCCCEEEEEccc--cceEEEeCCHHHHHHHH
Confidence 44577888999999886654 543 2333223 8999999999998 899999999997 999999976 4578888
Q ss_pred HHHHHHhHh
Q 032251 109 SYVRSEYFE 117 (144)
Q Consensus 109 ~~l~~~y~~ 117 (144)
+.+++.|..
T Consensus 281 ~~l~~~~~~ 289 (297)
T PRK14613 281 PRLRQEFSN 289 (297)
T ss_pred HHHHHhhcc
Confidence 888776654
No 32
>PRK01123 shikimate kinase; Provisional
Probab=98.51 E-value=1.2e-06 Score=70.21 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=60.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHHH
Q 032251 33 KGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 112 (144)
Q Consensus 33 ~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~ 112 (144)
.+..+++++|+. .+|+.++...+..+++++ +++..+++ .|++|+++||+| |||++|++++..+++.++|+
T Consensus 195 ~~~~~~~~~~l~---~~~~~~~l~~~~~l~~~~----~~i~~a~~-~Ga~ga~lSGaG--ptv~al~~~~~~~~v~~~l~ 264 (282)
T PRK01123 195 MAFELALDGEYF---KAMTLNGLLYSSALGFPT----EPALEALE-AGAVGVGLSGTG--PSYVAIVDEEDPEEVKEAWE 264 (282)
T ss_pred HHHHHHhhccHH---HHHHhCCchhhhhhCCCh----HHHHHHHH-CCCeEEEEecCC--CeEEEEeCCCCHHHHHHHHH
Confidence 444555677774 677766544444565553 33555777 899999999976 99999998878888877777
Q ss_pred HHhHhhchhHhhhcCCCceEEEee-cCCCeec
Q 032251 113 SEYFELQPELASQLNADSAVLICK-PGDCARV 143 (144)
Q Consensus 113 ~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 143 (144)
+. .++++++ ...|+++
T Consensus 265 ~~---------------~~~~~~~~~~~G~~v 281 (282)
T PRK01123 265 KY---------------GKVIVTKINNEGARI 281 (282)
T ss_pred hC---------------CEEEEeeecCCCcee
Confidence 62 3567777 4577765
No 33
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=98.46 E-value=6.7e-06 Score=66.39 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=93.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---hhc--cCCCChHHHHHHHHHHhCC
Q 032251 5 VYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS---IYN--YECGSEPLIQLNEILQRAP 79 (144)
Q Consensus 5 ~~~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~l---r~~--~~vs~peld~l~~~a~~~~ 79 (144)
++......++.+...++.|++- ..++.++..+|++.||+.|++-|... -+. -..-|+.+..+++.+.+ +
T Consensus 183 ~if~~~~p~p~~~~~~ls~~vL-----m~mmPavvE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~-~ 256 (312)
T COG1907 183 DIFKKYCPVPLEEVGELSHRVL-----MKMMPAVVERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVE-A 256 (312)
T ss_pred HHHHhcCCCCHHHHHHHHHHHH-----HHHhHHHHhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHH-h
Confidence 3444445677777777776664 56888999999999999999888755 222 33347889999999998 6
Q ss_pred CCceeEeecCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeec-CCCeec
Q 032251 80 GVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 143 (144)
Q Consensus 80 Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~-~~Ga~~ 143 (144)
+||+-+|- ||+++.++++.....+++..+.+.+.+. +....+++++| ..||.+
T Consensus 257 -a~~agqSS--wGPtvY~i~d~~~~~~~~~~~~~~~~~~--------g~~gev~vT~~rN~Ga~i 310 (312)
T COG1907 257 -AYGAGQSS--WGPTVYGIVDSREAGSVVRKLIDILLEE--------GIGGEVFVTKARNRGAEI 310 (312)
T ss_pred -cccccccc--cCCEEEEeccccccchHHHHHHHHHHhc--------CCceEEEEeccCCCCcee
Confidence 78887764 6699999999888887777777776663 88899999995 556654
No 34
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.42 E-value=7.7e-07 Score=71.54 Aligned_cols=82 Identities=20% Similarity=0.283 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecc-ccHHH
Q 032251 29 RRVAKGLEAWKS-GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEE 106 (144)
Q Consensus 29 ~r~~~~~~aL~~-~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~ 106 (144)
.++...+.++.+ +|++.++.++|+- +..+..+ .|+++++.+.+++ .|++|+.|||+| +|+++|+++ +.+++
T Consensus 193 ~~~~~l~~~l~~~~~~~l~~~~~nD~-e~~~~~l---~p~l~~v~~~~~~-~Galg~~lSGSG--ptv~al~~~~~~a~~ 265 (287)
T PRK14616 193 PDLKTLVRRLCLDGDTSVLPAFENDF-ESAVFDH---YPAVRKVKDDLLE-AGSFFASLSGSG--SAVFGLFENEADAEA 265 (287)
T ss_pred chHHHHHHHHhcCCHHHHHHHhcCcc-HHHHHHh---ChHHHHHHHHHHh-CCCCeEEEeccc--ccceEEeCCHHHHHH
Confidence 344445555554 5777777666533 2333333 7999999999998 899999999999 999999976 46888
Q ss_pred HHHHHHHHhHh
Q 032251 107 AASYVRSEYFE 117 (144)
Q Consensus 107 ~~~~l~~~y~~ 117 (144)
+.+.+++.|..
T Consensus 266 i~~~l~~~~~~ 276 (287)
T PRK14616 266 AAEMMRARYRT 276 (287)
T ss_pred HHHHhHHhCcc
Confidence 88888887765
No 35
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=98.30 E-value=2.7e-05 Score=66.71 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHhhhc---c--CCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHHHHHhH
Q 032251 42 NSQDFGKLISASGLSSIYN---Y--ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 116 (144)
Q Consensus 42 d~~~lg~lm~~s~~~lr~~---~--~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~ 116 (144)
|+..+.+.|.++-..||+. - .|-+|++-+|++.+.+..|++|++.+|||+|-|+++|+..+. ++++.+.+.|.
T Consensus 353 ~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~ 430 (454)
T TIGR01219 353 ELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWS 430 (454)
T ss_pred cHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHh
Confidence 7888888888888777642 2 344788999999999989999999999999999999986543 24556666665
Q ss_pred h
Q 032251 117 E 117 (144)
Q Consensus 117 ~ 117 (144)
.
T Consensus 431 ~ 431 (454)
T TIGR01219 431 S 431 (454)
T ss_pred h
Confidence 4
No 36
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=98.27 E-value=6e-06 Score=66.11 Aligned_cols=101 Identities=23% Similarity=0.218 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhhhccCCC-ChHHHHHHHHHHhC--CCCceeEeecCCCCceeE
Q 032251 22 EHYFTENRRVAKGLEAWKSG-NSQ-DFGKLISASGLSSIYNYECG-SEPLIQLNEILQRA--PGVFGARFSGAGFRGCCL 96 (144)
Q Consensus 22 ~~~v~e~~r~~~~~~aL~~~-d~~-~lg~lm~~s~~~lr~~~~vs-~peld~l~~~a~~~--~Ga~GakisGaG~GG~vi 96 (144)
.|.+.|.+|......||-.+ |-. ....+|. +-.++.|+.+ +|.+..+...+... +|.+|..+|||| ++++
T Consensus 239 ~d~V~NlqrlA~LttAl~~~p~n~~L~y~~m~---DkvhqPyRa~LIPGl~~il~~~~p~t~pGl~GiclSGAG--PT~l 313 (355)
T KOG1537|consen 239 VDHVWNLQRLAALTTALLEGPDNVMLGYALMS---DKVHQPYRAPLIPGLEAILKAALPATYPGLFGICLSGAG--PTAL 313 (355)
T ss_pred eeeeecHHHHHHHHHHHhcCCCchhhhhhhhh---ccccCccccccCccHHHHHHhhCcccCCceeeEEecCCC--CeeE
Confidence 35667788888888888776 444 4444555 3455677777 89999999999871 499999999999 9999
Q ss_pred EEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee
Q 032251 97 ALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK 136 (144)
Q Consensus 97 al~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~ 136 (144)
++.. ++-+++.++|-++|... |.++.+-.++
T Consensus 314 Alat-enf~eI~~~mv~~F~K~--------G~kcs~~~l~ 344 (355)
T KOG1537|consen 314 ALAT-ENFQEIGEKMVEAFWKV--------GHKCSVASLK 344 (355)
T ss_pred EEec-CcHHHHHHHHHHHHHhh--------CceeeeEeec
Confidence 9996 78899999999888874 9999999888
No 37
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.21 E-value=1.5e-06 Score=69.56 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHH
Q 032251 30 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAA 108 (144)
Q Consensus 30 r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~ 108 (144)
++.....+|.++|...+... +.......+|+++++++.+++ .|++|++|||+| +|+++|++.+. ++++.
T Consensus 189 ~~~~l~~~l~~~d~~~~~n~-------l~~~~~~~~p~l~~i~~~l~~-~Ga~~~~lSGsG--ptvfal~~~~~~a~~~~ 258 (276)
T PRK14612 189 DVEAILAALARGEEPPYWNS-------LEGPVFARHPELQEVLAALRA-AGLRGVLMSGSG--STCFGLAEDAAQAQRAA 258 (276)
T ss_pred cHHHHHHHHHhcccccccCC-------cHHHHHHhChHHHHHHHHHHh-CCCCEEEEcCcc--hhhEEEeCCHHHHHHHH
Confidence 45566777777774322211 222122358999999999998 899999999999 99999997544 67777
Q ss_pred HHHHHH
Q 032251 109 SYVRSE 114 (144)
Q Consensus 109 ~~l~~~ 114 (144)
+.+++.
T Consensus 259 ~~l~~~ 264 (276)
T PRK14612 259 AALRAR 264 (276)
T ss_pred HHhHhh
Confidence 777654
No 38
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=98.20 E-value=5.3e-06 Score=67.06 Aligned_cols=76 Identities=20% Similarity=0.082 Sum_probs=52.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHHHHHH
Q 032251 34 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVR 112 (144)
Q Consensus 34 ~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~ 112 (144)
...++..++++.+... .|+.+....-.++|+++++++.+++ .|++|++|||+| +|+++|++.+. +.++.+.+.
T Consensus 199 l~~~~~~~~~~~~~~~---~~ndle~~~~~~~p~l~~i~~~l~~-~Ga~~a~mSGSG--~tvf~l~~~~~~a~~~~~~~~ 272 (293)
T TIGR00154 199 WLKKISLECLQLLDSN---GLNDLEKVALKRHTEVAQALNWLLE-YGLAPERLSGSG--ACVFALFDMESEAEQVLEQAP 272 (293)
T ss_pred HHHHHhhccHHHHhhh---hcCccHHHHHhcCHHHHHHHHHHHh-CCCCeEEEeccc--cceEEEeCCHHHHHHHHHHhH
Confidence 3445555565544332 2344443222358999999999998 899999999997 99999997654 666666665
Q ss_pred HHh
Q 032251 113 SEY 115 (144)
Q Consensus 113 ~~y 115 (144)
+.+
T Consensus 273 ~~~ 275 (293)
T TIGR00154 273 EWL 275 (293)
T ss_pred HHh
Confidence 443
No 39
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.11 E-value=3.4e-06 Score=67.65 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHHHHHHH
Q 032251 65 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 113 (144)
Q Consensus 65 ~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~~ 113 (144)
.|+++++++.+++ .|++|++|||+| ||++++++++. ++++.+.+++
T Consensus 222 ~p~l~~i~~~~~~-~Galga~lSGSG--~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 222 FPVIGEIKEELLA-AGARGSLMSGSG--STVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred ChHHHHHHHHHHh-CCCCEEEEeccc--cceEEEeCCHHHHHHHHHHhhh
Confidence 7999999999998 899999999998 99999998765 5666666655
No 40
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.08 E-value=1.4e-05 Score=64.69 Aligned_cols=47 Identities=30% Similarity=0.411 Sum_probs=40.1
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccc-cHHHHHHHHHH
Q 032251 64 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 113 (144)
Q Consensus 64 s~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~~~~~~l~~ 113 (144)
..|+++++.+.+++ .|++|++|||+| +|+++|++.+ .++++.+.+++
T Consensus 239 l~P~l~~~~~~~~~-~GAlga~mSGSG--ptvfaL~~~~~~a~~i~~~l~~ 286 (296)
T PRK14615 239 AHPELRRLKETLLR-HGAAAALMSGSG--SSVFGLFRRRAQAEAAFEMLKG 286 (296)
T ss_pred hChHHHHHHHHHHh-cCCCEEEEeccC--cceEEEeCCHHHHHHHHHHHhh
Confidence 48999999999998 899999999999 9999998754 46666666665
No 41
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.66 E-value=2.9e-05 Score=62.07 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=38.8
Q ss_pred HHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccc
Q 032251 54 GLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 102 (144)
Q Consensus 54 ~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~ 102 (144)
|+.++......+|+++++.+.+++ .|++|++|||+| +|++++.+.+
T Consensus 208 ~Ndle~~~~~~~p~l~~i~~~l~~-~ga~~~~mSGSG--~tvf~l~~~~ 253 (269)
T PRK14609 208 VNDFEDSVFPKYPEIAEIKEKLYR-SGALYAAMSGSG--SSVFGIFKKP 253 (269)
T ss_pred CCChHHHHHHcChHHHHHHHHHHh-CCCCeEEEeCcc--ceeEEEECCh
Confidence 445665566668999999999998 899999999998 9999999653
No 42
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.65 E-value=9.7e-05 Score=59.63 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHhCC-CCceeEeecCCCCceeEEEeccc-cHHHHHHHHHH
Q 032251 65 SEPLIQLNEILQRAP-GVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 113 (144)
Q Consensus 65 ~peld~l~~~a~~~~-Ga~GakisGaG~GG~vial~~~~-~~~~~~~~l~~ 113 (144)
+|+++++.+.+++ . |++|++|||+| +|+++|++++ .++++.+.+++
T Consensus 230 ~p~l~~i~~~~~~-~~Ga~~~~lSGSG--stvf~l~~~~~~a~~~~~~l~~ 277 (290)
T PRK14608 230 APVIGEVLAALRA-QPGALLARMSGSG--ATCFALFADEAAAEAAAAAIAA 277 (290)
T ss_pred CcHHHHHHHHHHh-cCCCCeeEEeccc--cCeEEEeCCHHHHHHHHHHhHh
Confidence 8999999999998 8 99999999999 9999999764 36677766665
No 43
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.32 E-value=0.00048 Score=55.44 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=42.6
Q ss_pred HHHhhhccCCC-ChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecc-ccHHHHHHHHHH
Q 032251 54 GLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 113 (144)
Q Consensus 54 ~~~lr~~~~vs-~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~~~~l~~ 113 (144)
++.+. .+..+ +|+++++.+..++..|++++.|||+| +|+++++++ +.++++.+.+.+
T Consensus 211 ~Ndle-~~~~~l~P~l~~~~~~l~~~~ga~~a~mSGSG--sTvf~l~~~~~~a~~~~~~l~~ 269 (283)
T PRK14610 211 RNDLL-ETAISLVPEIEEILFVLESLEGCILSRMSGSG--ATCFALFEEEEAAEAAARYLKM 269 (283)
T ss_pred cCchH-HHHHHhChHHHHHHHHHHhcCCCceEEEeCcc--cceeEEeCCHHHHHHHHHHhhh
Confidence 34443 34445 89999999988753589999999999 999999866 446666666654
No 44
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.19 E-value=0.0009 Score=53.51 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=57.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCc
Q 032251 15 PTLAKRAEHY-FTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRG 93 (144)
Q Consensus 15 ~~~~~r~~~~-v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG 93 (144)
.+++.++..- +.+..+...+..++.++|++.++..+. +.+.+.+.-..|++.++.+.... .| +|+.|||+| +
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---n~l~~~~~~~~P~l~~~~~~l~~-~~-~~~~~SGSG--~ 246 (275)
T PRK14611 174 GRVYSKVTKQILTNKEDLNIIISLLREGEEKKIEEVIE---NTLGEIALELYPEIKEVYRFLEY-LG-YKPFVSGSG--S 246 (275)
T ss_pred HHHHHhcchhhccCcchHHHHHHHHHcCCHHHHHHhcC---CcccHHHHHHCHHHHHHHHHHHh-CC-CCEEEeCcc--c
Confidence 4455444322 333455666788999999998877654 45666664458999999887665 45 699999999 9
Q ss_pred eeEEEecc
Q 032251 94 CCLALVDA 101 (144)
Q Consensus 94 ~vial~~~ 101 (144)
+++++++.
T Consensus 247 tvf~l~~~ 254 (275)
T PRK14611 247 SVYVFGKP 254 (275)
T ss_pred cceeEeCC
Confidence 99999954
No 45
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=96.10 E-value=0.16 Score=41.57 Aligned_cols=83 Identities=17% Similarity=0.095 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCC-------hHH---HHHHHHHHhCCCCceeEeecCCCCceeEEEe
Q 032251 30 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGS-------EPL---IQLNEILQRAPGVFGARFSGAGFRGCCLALV 99 (144)
Q Consensus 30 r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~-------pel---d~l~~~a~~~~Ga~GakisGaG~GG~vial~ 99 (144)
++..++.+|.++|++.||++...+-..|+...--+. |+. =.+++..++ .|.-.+-..=|| +.+..|+
T Consensus 212 ~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~-~g~~~~~T~DAG--pNv~vl~ 288 (305)
T TIGR01240 212 DFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ-GGTICYFTMDAG--PNVKVLY 288 (305)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHh-CCCcEEEEEcCC--CCEEEEE
Confidence 577889999999999999998887777774322222 222 245555565 576666777777 9999999
Q ss_pred ccccHHHHHHHHHHHh
Q 032251 100 DADRAEEAASYVRSEY 115 (144)
Q Consensus 100 ~~~~~~~~~~~l~~~y 115 (144)
++++.+++.+.+.+.|
T Consensus 289 ~~~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 289 LAENLSKLFEFIYKLF 304 (305)
T ss_pred ccccHHHHHHHHHHhc
Confidence 9999999988887654
No 46
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.04 E-value=0.013 Score=46.82 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHHHHHHHH
Q 032251 65 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRSE 114 (144)
Q Consensus 65 ~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~~~ 114 (144)
.|+++++.+.+.+ .|+ +.|||+| +|++++++++. ++++.+.+++.
T Consensus 217 ~P~~~~~~~~l~~-~ga--~~mSGSG--~tvF~l~~~~~~a~~~~~~l~~~ 262 (271)
T PRK00343 217 YPEVAQALSWLLE-YAP--SRMTGTG--ACVFAEFDTEAEAEQVLAQLPEW 262 (271)
T ss_pred ChHHHHHHHHHHh-CCC--eEEeccc--cceEEEcCCHHHHHHHHHHhhhh
Confidence 7899999998887 788 8899999 99999997644 56666666544
No 47
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.46 E-value=0.37 Score=38.86 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=52.0
Q ss_pred HhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHHHHHhHh
Q 032251 38 WKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 38 L~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~ 117 (144)
-.+|+| .+.|.-|....-.-++.+. +++..+++ .|+.++-+||-| +++++|+++. +++.+.|.+
T Consensus 196 A~~G~~---~~Am~lNG~~y~~aLG~~~----e~~~~ale-~GA~~aglSGtG--Pa~~Al~~~~--~~v~ea~~~---- 259 (278)
T COG1685 196 ALKGEY---FKAMVLNGILYCSALGYDL----EPALKALE-AGAAAAGLSGTG--PAYFALTEDP--EEVAEAWSK---- 259 (278)
T ss_pred HhcccH---HHHHHHhHHHHHHHhCCCh----HHHHHHHh-cccceeccCCCC--CceEEEecCc--HHHHHHHHh----
Confidence 356888 5566665544433344332 45677887 899999999999 9999999776 555555554
Q ss_pred hchhHhhhcCCCceEEEee-cCCCee
Q 032251 118 LQPELASQLNADSAVLICK-PGDCAR 142 (144)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~-~~~Ga~ 142 (144)
+ -++++++ .+.+++
T Consensus 260 --------~---G~V~~t~~~~~~~~ 274 (278)
T COG1685 260 --------I---GDVIETRNVGERAR 274 (278)
T ss_pred --------C---CeEEEEecCCCCce
Confidence 2 4677777 444454
No 48
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=94.69 E-value=0.056 Score=43.96 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHHHHHHH
Q 032251 65 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 113 (144)
Q Consensus 65 ~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~~ 113 (144)
.|++........+ .|+.+++|||+| .|++++.+.+. ++++.+.+.+
T Consensus 225 ~p~v~~~~~~l~~-~ga~~~~mSGSG--stvF~l~~~~~~a~~~~~~l~~ 271 (289)
T COG1947 225 YPEVKEALSELLE-YGALPARMSGSG--STVFALFDTEKEAQRVAEQLPK 271 (289)
T ss_pred ChHHHHHHHHHhh-cccccceEecCC--CcEEEEeCChHHHHHHHHHhhc
Confidence 5788776666665 688999999999 99999998775 5555555444
No 49
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=94.52 E-value=0.093 Score=42.64 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHhCCCC-ce--eEeecCCCCceeEEEecccc-HHHHH-HHHHHHhH
Q 032251 65 SEPLIQLNEILQRAPGV-FG--ARFSGAGFRGCCLALVDADR-AEEAA-SYVRSEYF 116 (144)
Q Consensus 65 ~peld~l~~~a~~~~Ga-~G--akisGaG~GG~vial~~~~~-~~~~~-~~l~~~y~ 116 (144)
.|++.++.+...+ .|+ +| ++|||+| .|++++.+.+. .+++. ..+++.|.
T Consensus 206 ~p~i~~~~~~l~~-~~~~~~~~~~MSGSG--st~F~l~~~~~~~~~~~~~~~~~~~~ 259 (288)
T PRK00650 206 RLDLKEKKHWLES-LWAELPVHVGLTGSG--ATLFVRYPEILEKDPSYAAQIQRAIT 259 (288)
T ss_pred ChHHHHHHHHHHh-ccccCCCeEEEeCcc--cCEEEEeCCHHHHHHHHHHHhHhhhh
Confidence 6899999998887 544 34 7899999 99999997643 55554 55655543
No 50
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=94.04 E-value=0.87 Score=40.27 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHhCCCHHHHHHHHHHHHHHhhhc-cCCCChHHHHHHHHHHhCCCCcee--EeecC
Q 032251 17 LAKRAEHYFTENRRVA----KGLEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGA--RFSGA 89 (144)
Q Consensus 17 ~~~r~~~~v~e~~r~~----~~~~aL~~~d~~~lg~lm~~s~~~lr~~-~~vs~peld~l~~~a~~~~Ga~Ga--kisGa 89 (144)
.+.|+....++..... +..+.+++|.++.+|+++...|....-- -++..+...+|.+.... -..|- -..||
T Consensus 819 ~far~~a~~Q~ah~l~~~tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLap--h~hgesgw~AGA 896 (948)
T KOG4644|consen 819 FFARCKATKQKAHKLAEATDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAP--HKHGESGWAAGA 896 (948)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcc--ccccccchhccC
Confidence 4567777777665544 4556678899999999999887654421 22333455567666543 23333 48899
Q ss_pred CCCceeEEEeccccHHHHHHH
Q 032251 90 GFRGCCLALVDADRAEEAASY 110 (144)
Q Consensus 90 G~GG~vial~~~~~~~~~~~~ 110 (144)
|+||++..+.++....+-+++
T Consensus 897 GGGGFiYLl~kEpqqkeaiEa 917 (948)
T KOG4644|consen 897 GGGGFIYLLIKEPQQKEAIEA 917 (948)
T ss_pred CCCcEEEEEecCCCCHHHHHH
Confidence 999999999977665544433
No 51
>PLN02407 diphosphomevalonate decarboxylase
Probab=92.86 E-value=0.85 Score=38.04 Aligned_cols=86 Identities=19% Similarity=0.091 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCC-------ChHH---HHHHHHHHhCCCC-ceeEeecCCCCceeEE
Q 032251 29 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-------SEPL---IQLNEILQRAPGV-FGARFSGAGFRGCCLA 97 (144)
Q Consensus 29 ~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs-------~pel---d~l~~~a~~~~Ga-~GakisGaG~GG~via 97 (144)
.++.++.+|++++|++.||++.-.+-..|+...--+ +|+. =.+|+..++..|. -.+-..=|| +.+..
T Consensus 235 ~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAG--PNv~v 312 (343)
T PLN02407 235 KRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAG--PNAVL 312 (343)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCC--CCEEE
Confidence 455688899999999999999988777777432222 2222 2445555542354 345667788 99999
Q ss_pred EeccccHHH-HHHHHHHHhH
Q 032251 98 LVDADRAEE-AASYVRSEYF 116 (144)
Q Consensus 98 l~~~~~~~~-~~~~l~~~y~ 116 (144)
|+.+++.++ |++++.+.|.
T Consensus 313 l~~~~~~~~~v~~~~~~~~~ 332 (343)
T PLN02407 313 IALNRKVAAQLLQRLLYYFP 332 (343)
T ss_pred EEChhhhHHHHHHHHHHhcC
Confidence 998888886 8877776553
No 52
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=90.80 E-value=5.1 Score=33.31 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=55.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCC-------ChHHHHHHHHHHhC--CCCceeEeecCCCCceeEEEeccc
Q 032251 32 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-------SEPLIQLNEILQRA--PGVFGARFSGAGFRGCCLALVDAD 102 (144)
Q Consensus 32 ~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs-------~peld~l~~~a~~~--~Ga~GakisGaG~GG~vial~~~~ 102 (144)
+.+..+++.+|++.|+++...+-..|+..+--+ +++.-.+++..++. .|-..+-.+=|| +.|..++..+
T Consensus 218 ~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~~~~fT~DaG--PnV~v~~~~~ 295 (329)
T COG3407 218 EEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGNAVYFTMDAG--PNVKVITLEE 295 (329)
T ss_pred HHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhcCCceEEEEcCC--CceEEEEecc
Confidence 467888899999999999888777777432222 23333444444331 132334555566 9999999999
Q ss_pred cHHHHHHHHHHHh
Q 032251 103 RAEEAASYVRSEY 115 (144)
Q Consensus 103 ~~~~~~~~l~~~y 115 (144)
..+.+.+.+.+.+
T Consensus 296 ~l~~~~~~~~~~~ 308 (329)
T COG3407 296 NLIDLLEILKTLE 308 (329)
T ss_pred cHHHHHHHHhhcc
Confidence 9999888877654
No 53
>PRK05905 hypothetical protein; Provisional
Probab=89.60 E-value=0.39 Score=38.43 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEe
Q 032251 65 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 99 (144)
Q Consensus 65 ~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~ 99 (144)
+|++.++.+..++ .|+ .+.|||+| .|++++-
T Consensus 223 ~P~i~~~~~~l~~-~g~-~a~MSGSG--stvF~l~ 253 (258)
T PRK05905 223 YPNLLYKYNELLN-DGF-YTILSGAG--SSFIVIK 253 (258)
T ss_pred ChHHHHHHHHHHh-CCC-CEEEeCcc--hhheEEe
Confidence 7999999999887 686 88999999 9999874
No 54
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=82.10 E-value=3.7 Score=25.48 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHHHH
Q 032251 64 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 113 (144)
Q Consensus 64 s~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~ 113 (144)
+...+..|.+.+++ .|.--.|+|... +.++--++++.++.+.+.+.+
T Consensus 22 ~~~~l~~la~ia~~-yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 22 SAEQLRALAEIAEK-YGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EHHHHHHHHHHHHH-HSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-hCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 45578889999998 676667999888 888888999999999888875
No 55
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.03 E-value=75 Score=25.86 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=56.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccc----cHHHHH
Q 032251 33 KGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD----RAEEAA 108 (144)
Q Consensus 33 ~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~----~~~~~~ 108 (144)
.+..|+..+|...+|++=..|-..-. -..+-|.+++|.+.+.+ .+++|--..-+| +|+.|.=+. +..++.
T Consensus 201 ~v~~A~~~~~~~~lG~AAT~SAv~~Q--~~LPK~~~~~lL~l~e~-~~~~Gv~VAHSG---tmlGli~D~~~~~d~~k~~ 274 (293)
T COG4542 201 LVEKALKVGDPKLLGEAATLSAVKNQ--DRLPKPGLNELLRLVEE-TCAIGVIVAHSG---TMLGLIYDRKYALDPRKLR 274 (293)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHhhc--cccCchhHHHHHHHHHH-hcccceEEeccC---ceEEeeeccccccchHHHH
Confidence 45578899999999999886653222 45567889999999998 788998888874 888877332 234444
Q ss_pred HHHHHHhHh
Q 032251 109 SYVRSEYFE 117 (144)
Q Consensus 109 ~~l~~~y~~ 117 (144)
-.+++.|..
T Consensus 275 ~~l~r~~~~ 283 (293)
T COG4542 275 VVLARNYKT 283 (293)
T ss_pred HHHHHhhhc
Confidence 455565544
No 56
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=63.05 E-value=92 Score=26.21 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHhhhc-cCCCChHH-------HHHHHHHHh---CCCC-ce
Q 032251 17 LAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLIS-ASGLSSIYN-YECGSEPL-------IQLNEILQR---APGV-FG 83 (144)
Q Consensus 17 ~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~-~s~~~lr~~-~~vs~pel-------d~l~~~a~~---~~Ga-~G 83 (144)
...|+.++|- +|..++.+++.+.||+.|+++.- +|. .++.. +.- .|-+ -.+++...+ ..|- .-
T Consensus 224 ~qhRi~~vVP--~Ri~~m~eaI~~rDF~~FA~lTm~DSN-qFHAvclDT-~PPI~YmNd~S~~iI~~vh~~N~~~G~t~v 299 (395)
T KOG2833|consen 224 LQHRIESVVP--QRIQQMREAIRERDFESFAKLTMKDSN-QFHAVCLDT-FPPIFYLNDTSWRIISLVHEFNASAGGTRV 299 (395)
T ss_pred HHHHHHhhhH--HHHHHHHHHHHhcCHHHHHHHHHhcch-hhhhhhhcc-CCCeEEeccchHHHHHHHHHHHhccCCeeE
Confidence 4566666665 57788999999999999999643 333 34321 111 1111 123333332 2233 34
Q ss_pred eEeecCCCCceeEEEeccccHHHHHHHHHHHhHh
Q 032251 84 ARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 84 akisGaG~GG~vial~~~~~~~~~~~~l~~~y~~ 117 (144)
|-.--||=..|++++ ++.+.++.+.+-+.|..
T Consensus 300 AYTFDAGPNAvl~~l--~e~~~~~l~~~~~~f~~ 331 (395)
T KOG2833|consen 300 AYTFDAGPNAVLIVL--EENVSQLLAAVLKVFPP 331 (395)
T ss_pred EEEecCCCceEEEEh--hhhHHHHHHHHHHhcCC
Confidence 455567855555554 56777877777776654
No 57
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=62.83 E-value=14 Score=24.07 Aligned_cols=63 Identities=17% Similarity=0.108 Sum_probs=38.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHH--HHHHHhCC--CHHHHHHHHHHHHHHhhhccCCCChHHHHHHH
Q 032251 11 NELEPTLAKRAEHYFTENRRVAK--GLEAWKSG--NSQDFGKLISASGLSSIYNYECGSEPLIQLNE 73 (144)
Q Consensus 11 ~~l~~~~~~r~~~~v~e~~r~~~--~~~aL~~~--d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~ 73 (144)
-.||++...|+.....+..|+.. ...++..+ +++.|.-..+.--...+.++++-+.++++++.
T Consensus 10 iRlp~E~~eRL~~Ls~~tgrtkayyvrEaIE~~ieemED~ylA~~aler~k~G~~q~~Sa~~~~~~~ 76 (80)
T COG4710 10 IRLPLELKERLDNLSKNTGRTKAYYVREAIEAYIEEMEDFYLAVNALERLKDGDYQKASAKIDKIVK 76 (80)
T ss_pred eeCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 36888888898888888888754 23455442 45555444443333333456666667666653
No 58
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=58.22 E-value=30 Score=21.49 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032251 15 PTLAKRAEHYFTENRRVAKGL 35 (144)
Q Consensus 15 ~~~~~r~~~~v~e~~r~~~~~ 35 (144)
+++-.|+-..-.|..|+...+
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554433
No 59
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=53.93 E-value=37 Score=27.20 Aligned_cols=39 Identities=21% Similarity=0.113 Sum_probs=33.2
Q ss_pred cCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEe
Q 032251 61 YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 99 (144)
Q Consensus 61 ~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~ 99 (144)
-|+|+.|+|.+++.-....|++-+....-||.+.+..-+
T Consensus 34 pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSv 72 (255)
T COG0024 34 PGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISV 72 (255)
T ss_pred CCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeeh
Confidence 899999999999888776899999999999777766654
No 60
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=51.45 E-value=1e+02 Score=25.65 Aligned_cols=45 Identities=16% Similarity=-0.058 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHH
Q 032251 32 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQ 76 (144)
Q Consensus 32 ~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~ 76 (144)
.++..+|.++|.+.|-++|.++...+-+...-.-.+.|.+++...
T Consensus 325 ~~l~~~l~~~d~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 369 (374)
T PRK11199 325 GEALELLEQGDKQAFIDSFRKVEHWFGDYAEQFLKESRSLLQQAN 369 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 356677889999999999998876655322222345566666554
No 61
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=47.08 E-value=21 Score=29.81 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=16.2
Q ss_pred eEeecCCCCceeE--EEeccccHHH
Q 032251 84 ARFSGAGFRGCCL--ALVDADRAEE 106 (144)
Q Consensus 84 akisGaG~GG~vi--al~~~~~~~~ 106 (144)
.-++|+|.||+|| ++|++..+-.
T Consensus 38 ~e~~~gG~gg~vi~AVmVDpgav~q 62 (387)
T COG3064 38 IEASGGGGGGSVIDAVMVDPGAVVQ 62 (387)
T ss_pred ccccCCCCCcceeeeeEeCcHHHHH
Confidence 3567888889998 6677765443
No 62
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=43.26 E-value=22 Score=28.29 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEec
Q 032251 65 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 100 (144)
Q Consensus 65 ~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~ 100 (144)
+|++.++.+ .++.|||+| .|++++-+
T Consensus 230 ~P~i~~~~~--------~~~~mSGSG--stvF~l~~ 255 (257)
T PRK04181 230 YPALKDYLG--------EDWFFSGSG--SSFFRVKR 255 (257)
T ss_pred CHHHHHHhc--------CCcEEeCcC--cceEEEee
Confidence 566665532 346799999 99999753
No 63
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=42.53 E-value=82 Score=24.22 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCC-ceeEeecCCCCceeEEEeccccHHHHHHHHHH
Q 032251 44 QDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV-FGARFSGAGFRGCCLALVDADRAEEAASYVRS 113 (144)
Q Consensus 44 ~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga-~GakisGaG~GG~vial~~~~~~~~~~~~l~~ 113 (144)
..+..||.+.. .|. .+.|+...+..+.+.|.. .|+ |...=-=.+..|.+.++.+..+++.+-.++.+
T Consensus 22 ~slk~L~k~g~-~l~-~i~i~~~~lk~F~k~AkK-yGV~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~ 89 (204)
T PF12687_consen 22 QSLKKLLKQGK-GLK-NIEITDEDLKEFKKEAKK-YGVDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKE 89 (204)
T ss_pred eeHHHHHhcCC-Cce-EEecCHhhHHHHHHHHHH-cCCceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHH
Confidence 35666777533 565 488888899999999999 899 55543122222578888888888888777765
No 64
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=42.20 E-value=26 Score=21.95 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 032251 32 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 75 (144)
Q Consensus 32 ~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a 75 (144)
..+..+|.+..+..++.++..+...+..--+++-..++++.+..
T Consensus 21 ~Ra~n~L~~~~I~tv~dL~~~s~~~L~~i~n~G~ksl~EI~~~L 64 (66)
T PF03118_consen 21 VRAYNCLKRAGIHTVGDLVKYSEEDLLKIKNFGKKSLEEIKEKL 64 (66)
T ss_dssp HHHHHHHHCTT--BHHHHHCS-HHHHHTSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCHHHHHhCCHHHHHhCCCCCHhHHHHHHHHH
Confidence 46778899999999999999888888766666656667766544
No 65
>PRK07758 hypothetical protein; Provisional
Probab=42.10 E-value=33 Score=23.45 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCC
Q 032251 32 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 80 (144)
Q Consensus 32 ~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~G 80 (144)
..+..+|....+..++++...+...|...-++.--.+++|.+...+ .|
T Consensus 44 vRA~N~Lk~AGI~TL~dLv~~te~ELl~iknlGkKSL~EIkekL~E-~G 91 (95)
T PRK07758 44 APARRALEHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKALEE-SG 91 (95)
T ss_pred HHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH-cC
Confidence 3567888899999999999988888777666666678888887776 55
No 66
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=41.00 E-value=56 Score=27.08 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHHH
Q 032251 64 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 112 (144)
Q Consensus 64 s~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~ 112 (144)
|.+.+-.+++.|.+ .|.=..++|+-+ |-.|-..+.++++++.+.|+
T Consensus 43 ~~e~Lr~i~diAek-yG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~ 88 (317)
T COG2221 43 SAETLRKIADIAEK-YGDGLIHITSRQ--GLEIPGISPEDADDVVEELR 88 (317)
T ss_pred CHHHHHHHHHHHHH-hCCCeEEEEecC--ceEeccCCHHHHHHHHHHHH
Confidence 34445556666665 454344666555 55555555556666555555
No 67
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=40.84 E-value=2e+02 Score=23.49 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCC---hHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHHHHH
Q 032251 44 QDFGKLISASGLSSIYNYECGS---EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 114 (144)
Q Consensus 44 ~~lg~lm~~s~~~lr~~~~vs~---peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~ 114 (144)
-.++++........ +.++++. .++-.+.+.... .|.+..+.+|.|..|-.--+.-.-..+.+.+++...
T Consensus 316 ~~~~~i~~~y~~l~-~~~~~~~~~~~~~~~~l~~L~~-~glI~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK00411 316 VTTGEVYEEYKELC-EELGYEPRTHTRFYEYINKLDM-LGIINTRYSGKGGRGRTRLISLSYDPEDVLERLLED 387 (394)
T ss_pred ccHHHHHHHHHHHH-HHcCCCcCcHHHHHHHHHHHHh-cCCeEEEEecCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 35666666544333 3356643 556666666666 898888888777544443332233455666666543
No 68
>PHA01735 hypothetical protein
Probab=40.75 E-value=25 Score=22.70 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=29.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 032251 3 KEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQ 44 (144)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~ 44 (144)
.+.|++--..+.++..+|++.--...+-...+++-|+++|+.
T Consensus 7 ee~fs~LH~~lt~El~~RiksgeATtaDL~AA~d~Lk~NdIt 48 (76)
T PHA01735 7 EEQFDELHQLLTNELLSRIKSGEATTADLRAACDWLKSNDIT 48 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHCCCc
Confidence 455555556777888888877666666677777778777754
No 69
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=40.12 E-value=14 Score=13.89 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=3.6
Q ss_pred ecCCCC
Q 032251 87 SGAGFR 92 (144)
Q Consensus 87 sGaG~G 92 (144)
.|+|||
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 366666
No 70
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=37.92 E-value=1e+02 Score=21.14 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 032251 15 PTLAKRAEHYFTENRRVAKGLEAWKSG--NSQDFGKLISA 52 (144)
Q Consensus 15 ~~~~~r~~~~v~e~~r~~~~~~aL~~~--d~~~lg~lm~~ 52 (144)
+..|..+++++.-++|..++...|++. ++...|+-|.+
T Consensus 53 e~~Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~ 92 (97)
T PF15136_consen 53 EQQYQQSRTYVAMNERLQQARDQLKKKCEELRQAGEELER 92 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999888763 67777776654
No 71
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=37.13 E-value=61 Score=22.63 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCceeEeecCC----CCceeEEE-eccccHHHHHHHHHHHhHhh
Q 032251 67 PLIQLNEILQRAPGVFGARFSGAG----FRGCCLAL-VDADRAEEAASYVRSEYFEL 118 (144)
Q Consensus 67 eld~l~~~a~~~~Ga~GakisGaG----~GG~vial-~~~~~~~~~~~~l~~~y~~~ 118 (144)
..+.+.+...+ +|....|++-.| .|-+.+-+ +++++.+++++.+++.+.++
T Consensus 12 Da~~l~~~L~~-~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~R 67 (109)
T PF06153_consen 12 DADDLSDALNE-NGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKKR 67 (109)
T ss_dssp HHHHHHHHHHH-TT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--E
T ss_pred hHHHHHHHHHH-CCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcCc
Confidence 35678888887 898888998877 23444444 46678999999999988875
No 72
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=33.91 E-value=2.7e+02 Score=23.03 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCceeEeecCCCCceeEEEeccc
Q 032251 70 QLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 102 (144)
Q Consensus 70 ~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~ 102 (144)
.|-+.... .|+++.=+-|+|+|-.++++.++.
T Consensus 276 ~Ld~i~~l-~gvl~~lipgaGggdaif~l~~~~ 307 (337)
T COG3890 276 ALDSIFDL-LGVLCDLIPGAGGGDAIFLLYRPN 307 (337)
T ss_pred hhhhHHhc-cCceEeecccCCCCceEEEEeccc
Confidence 45555555 899999999999999999998654
No 73
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=33.64 E-value=2.5e+02 Score=22.56 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhccC---CCChHHHHHHHHHHhCCCCceeEeecCCCCce
Q 032251 45 DFGKLISASGLSSIYNYE---CGSEPLIQLNEILQRAPGVFGARFSGAGFRGC 94 (144)
Q Consensus 45 ~lg~lm~~s~~~lr~~~~---vs~peld~l~~~a~~~~Ga~GakisGaG~GG~ 94 (144)
.++++........ +.++ ++..++-.+++.... .|..-.+.+|.|..|-
T Consensus 309 ~~~~~~~~y~~~~-~~~~~~~~~~~~~~~~l~~l~~-~gli~~~~~~~g~~g~ 359 (365)
T TIGR02928 309 RTGEVYEVYKEVC-EDIGVDPLTQRRISDLLNELDM-LGLVEAEERNKGRGGR 359 (365)
T ss_pred cHHHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHh-cCCeEEEEEcCCCCCc
Confidence 4555555333222 2344 333455566666666 7998999888887663
No 74
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=33.61 E-value=1.8e+02 Score=22.78 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=14.4
Q ss_pred HHHHHHhCCCHHHHHHHHHH
Q 032251 33 KGLEAWKSGNSQDFGKLISA 52 (144)
Q Consensus 33 ~~~~aL~~~d~~~lg~lm~~ 52 (144)
+..++|.++|.+.|.++|.|
T Consensus 239 ~l~~~l~~~d~~~l~~~l~~ 258 (258)
T PF02153_consen 239 ELREALEAGDEEELEELLEQ 258 (258)
T ss_dssp HHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHhcC
Confidence 45566678888888887764
No 75
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=31.99 E-value=2.1e+02 Score=21.19 Aligned_cols=106 Identities=12% Similarity=0.000 Sum_probs=49.5
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeE
Q 032251 9 HKNELEPTLAKRAEHYFTENRRVAKGLEAWKS---GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGAR 85 (144)
Q Consensus 9 ~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~---~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~Gak 85 (144)
..+.|+++.+..+..-+.|..+-. ..++.. .+++.|-..|.+....+ +. +...++... .--+|.|
T Consensus 10 ~~N~l~~~~f~~~l~~~~e~~~Wa--~~~~~~RPf~s~~~L~~a~~~~~~~~------~~---~~~~~~l~~-HP~lg~~ 77 (166)
T PRK13798 10 EFNALPERQAVHALFECCHSTAWA--RRLAAARPFADHDALLAAADEALAGL------SE---ADIDEALAG-HPRIGER 77 (166)
T ss_pred HHhCCCHHHHHHHHHHHhcChHHH--HHHHHcCCCCCHHHHHHHHHHHHHcC------CH---HHHHHHHHh-CCcccCc
Confidence 346788777666666666665542 333333 35555555555433221 11 233344444 3347776
Q ss_pred eecCCCCceeEEEec-cccHHHHHHHHHHHhHhhchhHhhhcCCCceEE
Q 032251 86 FSGAGFRGCCLALVD-ADRAEEAASYVRSEYFELQPELASQLNADSAVL 133 (144)
Q Consensus 86 isGaG~GG~vial~~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~ 133 (144)
..+.+-.+==-++.. .+..-.-...+.+.|++ |||+...++
T Consensus 78 ~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~~-------kFGfpFii~ 119 (166)
T PRK13798 78 PASKASAREQAGVADADEAVMAALAAGNRAYEE-------KFGFVFLIC 119 (166)
T ss_pred cccccCHHHhcccccCCHHHHHHHHHHHHHHHH-------hCCCeEEEe
Confidence 644430000001111 11233334456667776 578655444
No 76
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=30.78 E-value=2.9e+02 Score=22.28 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCCcee--EeecCCCCceeEEEeccccHHHHHHHHHHHhHhh
Q 032251 67 PLIQLNEILQRAPGVFGA--RFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 118 (144)
Q Consensus 67 eld~l~~~a~~~~Ga~Ga--kisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~ 118 (144)
.+.-+.+...+ .| +|- .+.||.+|=-.+-...++.+.++.+.+.+.+.+.
T Consensus 41 d~~i~~~~~~~-~~-~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~~ 92 (268)
T TIGR01743 41 DIVIIKETFEK-FG-IGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSEP 92 (268)
T ss_pred hHHHHHHHHHh-cC-CceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHC
Confidence 45455555554 66 665 5677776655555556666888888888877763
No 77
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=29.72 E-value=1.9e+02 Score=21.43 Aligned_cols=48 Identities=21% Similarity=0.087 Sum_probs=32.1
Q ss_pred HHHHhccCCHH-HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032251 6 YEAHKNELEPT-LAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS 53 (144)
Q Consensus 6 ~~~~~~~l~~~-~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s 53 (144)
+.+.+..||-+ .......-+.++.-..++++.|++.+|..+-+.+..+
T Consensus 107 ~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~~~~~ 155 (179)
T PF06757_consen 107 VDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNALWAS 155 (179)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHHHHcC
Confidence 45666778844 4444456666677777888888888887776655543
No 78
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=29.60 E-value=52 Score=22.39 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=15.9
Q ss_pred HHHhccCCHHHHHHHHHHHH
Q 032251 7 EAHKNELEPTLAKRAEHYFT 26 (144)
Q Consensus 7 ~~~~~~l~~~~~~r~~~~v~ 26 (144)
+..++.|+|++|.|++..|.
T Consensus 2 ~~li~~mtPevY~rL~~AVE 21 (93)
T PF07023_consen 2 EQLIDSMTPEVYERLKQAVE 21 (93)
T ss_pred hHHHHhCCHHHHHHHHHHHH
Confidence 45678899999999887765
No 79
>PF07022 Phage_CI_repr: Bacteriophage CI repressor helix-turn-helix domain; InterPro: IPR010744 This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2FJR_B.
Probab=28.29 E-value=38 Score=20.88 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhh-hc-cCCCChHHHHHHHHHHhCCCC
Q 032251 31 VAKGLEAWKSGNSQDFGKLISASGLSSI-YN-YECGSEPLIQLNEILQRAPGV 81 (144)
Q Consensus 31 ~~~~~~aL~~~d~~~lg~lm~~s~~~lr-~~-~~vs~peld~l~~~a~~~~Ga 81 (144)
+...+.++-..+-..|++.+.-++..+. .- -+-+.| .+.+++.++. .|+
T Consensus 3 i~rl~~~~g~~~~~~lA~~lgis~st~s~~~~~r~~~P-~~~l~~ia~~-~gv 53 (66)
T PF07022_consen 3 IERLKEALGVKSDKELAERLGISKSTLSNNWKKRGSIP-AEWLIKIALE-TGV 53 (66)
T ss_dssp HHHHHHHHT-SSCHHHHCCTT--HHHHH-HHHHSSS---HHHHHHHHHH-H--
T ss_pred HHHHHHHhCCCCHHHHHHHhCcCHHHhhHHHHhCCCCC-HHHHHHHHHH-HCc
Confidence 4455566666666788888887776666 22 334567 8999999987 565
No 80
>COG3139 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.03 E-value=74 Score=21.24 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.9
Q ss_pred HHHHhccCCHHHHHHHHHHHH
Q 032251 6 YEAHKNELEPTLAKRAEHYFT 26 (144)
Q Consensus 6 ~~~~~~~l~~~~~~r~~~~v~ 26 (144)
+...++.|+|++|.|+...|+
T Consensus 3 ~~q~In~mtPEiYQrL~~AvE 23 (90)
T COG3139 3 LDQIINSMTPEIYQRLSTAVE 23 (90)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 677889999999999988775
No 81
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=26.82 E-value=92 Score=18.52 Aligned_cols=30 Identities=20% Similarity=0.043 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCChHHHHHHH
Q 032251 44 QDFGKLISASGLSSIYNYECGSEPLIQLNE 73 (144)
Q Consensus 44 ~~lg~lm~~s~~~lr~~~~vs~peld~l~~ 73 (144)
+.+-+-++.-|.-+|+.|+.--||++.++.
T Consensus 10 ~~id~ei~~~~~~lre~Y~~~FPEL~~lv~ 39 (53)
T PF08060_consen 10 DDIDKEINLLHMRLREWYSWHFPELESLVP 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHccchhHHHHcC
Confidence 445566666777888889888999997654
No 82
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=26.48 E-value=2.3e+02 Score=19.94 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhhhccCC
Q 032251 12 ELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGL--SSIYNYEC 63 (144)
Q Consensus 12 ~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~--~lr~~~~v 63 (144)
.+++....+...++...-.-...+..|....++.|.++|.++.. ++...|+-
T Consensus 55 ~l~~~~q~~~~~lL~~IL~nda~Ir~Llq~rl~eL~~li~~~~rq~~l~~aYg~ 108 (121)
T PRK10548 55 DISTVMQEQLRPMLRQILDNEAELKQLLQQRMDELSSLIGQSTRQKSVNSAYGQ 108 (121)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 45666666666555555544556666677778888888875533 34344543
No 83
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=26.19 E-value=3.3e+02 Score=21.50 Aligned_cols=11 Identities=18% Similarity=0.090 Sum_probs=5.3
Q ss_pred HHHhccCCHHH
Q 032251 7 EAHKNELEPTL 17 (144)
Q Consensus 7 ~~~~~~l~~~~ 17 (144)
...+..|++..
T Consensus 110 ~~~l~~L~~~~ 120 (293)
T PRK09636 110 MLALERLSPLE 120 (293)
T ss_pred HHHHHhCCHHH
Confidence 34445555553
No 84
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=26.12 E-value=33 Score=13.81 Aligned_cols=7 Identities=29% Similarity=0.762 Sum_probs=3.6
Q ss_pred EeecCCC
Q 032251 85 RFSGAGF 91 (144)
Q Consensus 85 kisGaG~ 91 (144)
.++|+|-
T Consensus 3 ~l~GgGV 9 (10)
T PF08250_consen 3 SLGGGGV 9 (10)
T ss_pred ccccCcC
Confidence 4555553
No 85
>PRK05182 DNA-directed RNA polymerase subunit alpha; Provisional
Probab=25.67 E-value=77 Score=25.99 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCC
Q 032251 23 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 80 (144)
Q Consensus 23 ~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~G 80 (144)
..+.+......+..+|++.++.+++.|+..+...|..--+..-..++++.+...+ .|
T Consensus 249 ~~I~~L~LS~R~~n~Lk~~~I~ti~dL~~~~~~~l~~~~n~G~ksl~ei~~~L~~-~g 305 (310)
T PRK05182 249 RPIEELELSVRSYNCLKRAGINTIGDLVQRTEEELLKTRNLGKKSLEEIKEKLAE-LG 305 (310)
T ss_pred ccHHHhccchHHHHHHHHcCCcCHHHHHhCCHHHHhcCCCCChhhHHHHHHHHHH-cC
Confidence 4467777777889999999999999999988888776555555667888887776 45
No 86
>PF15573 Imm27: Immunity protein 27
Probab=25.44 E-value=1.3e+02 Score=23.99 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHHHHH
Q 032251 15 PTLAKRAEHYFTENRRVAKGLEAWKSGNSQ---DFGKLISASGL 55 (144)
Q Consensus 15 ~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~---~lg~lm~~s~~ 55 (144)
++...-+.....|.+...-.+..++.||+. .|-++||+..+
T Consensus 17 ~~lK~~ll~~~tE~E~~lli~El~K~GDFsvK~LLiqLMN~TkD 60 (259)
T PF15573_consen 17 SELKENLLSVQTEKECLLLIIELLKKGDFSVKNLLIQLMNQTKD 60 (259)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhCCchhhHHHHHHHhcchh
Confidence 456666778889999999999999999976 78889998766
No 87
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=25.43 E-value=3.3e+02 Score=21.32 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 032251 32 AKGLEAWKSGNSQDFGKLISASGL 55 (144)
Q Consensus 32 ~~~~~aL~~~d~~~lg~lm~~s~~ 55 (144)
.+..++|+++|.+.|-+++.+...
T Consensus 249 ~~~~~~l~~~d~~~l~~~~~~~~~ 272 (279)
T PRK07417 249 DQLEELIEQENWSALEQKLEQTQE 272 (279)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777888999999999987664
No 88
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.42 E-value=1.7e+02 Score=23.96 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHHH
Q 032251 64 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 112 (144)
Q Consensus 64 s~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~ 112 (144)
.+|.+|.|.+.+.+ .|+.|+|+ -|||-+..+.....++..+.
T Consensus 120 ~~~GLD~Ll~R~~~-y~~~GaKw------RsViki~~~~~I~~na~qla 161 (296)
T PRK05377 120 PIPNLDDLLDRAVE-KGIFGTKM------RSVIKEANEQGIAAVVAQQF 161 (296)
T ss_pred cCCCHHHHHHHHHH-hCCCccce------eeeecCCCHHHHHHHHHHHH
Confidence 47899999999998 89999887 57888865444555444443
No 89
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.21 E-value=3e+02 Score=23.45 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=35.5
Q ss_pred hccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHHHHHHH
Q 032251 59 YNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 113 (144)
Q Consensus 59 ~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~~ 113 (144)
..+++|.|.++.+++..++ .|--++|.+=+|.| ++.+. -+.+.+.|++
T Consensus 327 s~l~~s~p~~~~vv~~L~~-~G~~asrTHf~p~g------iKTda~~~ev~~vl~~ 375 (380)
T COG1867 327 SKLGLSAPPLEEVVEALRS-AGYEASRTHFSPTG------IKTDAPYEEVEKVLKS 375 (380)
T ss_pred HHhCCCCCCHHHHHHHHHh-cCceeeeeccCCcc------cccCCCHHHHHHHHHH
Confidence 3489999999999999998 89777777777666 55554 5666655553
No 90
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=25.09 E-value=1.9e+02 Score=24.64 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHhhhccCCC-ChHHHHHHHHHHhCCCC
Q 032251 18 AKRAEHYFTENRRVAKGLEAWKSGNSQ--DFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGV 81 (144)
Q Consensus 18 ~~r~~~~v~e~~r~~~~~~aL~~~d~~--~lg~lm~~s~~~lr~~~~vs-~peld~l~~~a~~~~Ga 81 (144)
..|......+...=....++|+.|+.- ..+-++...|.-+-+..|+- ..|+-.-++.|++ .|+
T Consensus 48 ~~R~~sLl~~~~~~ldl~~vlk~Gk~~~~l~~~lLa~~Qrklg~~~Gv~PGsEmk~AIe~A~e-~ga 113 (388)
T COG1916 48 EARLLSLLGGSREELDLAQVLKEGKAFFLLAGLLLAYFQRKLGKELGVKPGSEMKAAIEAARE-LGA 113 (388)
T ss_pred HHHHHHHhcCCcccCCHHHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCC
Confidence 345555555544434677889999877 66677777777777778887 5788888888887 453
No 91
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=25.09 E-value=85 Score=26.79 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHhHhhchhHhhhcCCCceEEE-eecCCCe
Q 032251 103 RAEEAASYVRSEYFELQPELASQLNADSAVLI-CKPGDCA 141 (144)
Q Consensus 103 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~-~~~~~Ga 141 (144)
.++.+...+++.|++ +|++.+-|+ +|..+|.
T Consensus 237 ~Vd~~L~kir~KY~e--------YgI~e~PfViVKADaGT 268 (403)
T TIGR02049 237 AVDQVLSKTQKKYEE--------YGIHTQPYVIVKADAGT 268 (403)
T ss_pred HHHHHHHHHHHHHHH--------cCCCCCCeEEEEcCCCC
Confidence 466677777777776 577777665 6677764
No 92
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.88 E-value=2.8e+02 Score=20.30 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=35.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHH-----HHHHHh-CCCHHHHHHHHHHHH
Q 032251 3 KEVYEAHKNELEPTLAKRAEHYFTENRRVAK-----GLEAWK-SGNSQDFGKLISASG 54 (144)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~v~e~~r~~~-----~~~aL~-~~d~~~lg~lm~~s~ 54 (144)
.++|+.++..||++.++.+...++|.-.-.. --+++. =||++++++-+....
T Consensus 7 L~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 7 LNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 3577888889999999999888777654211 112222 378888888666543
No 93
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=24.50 E-value=2.9e+02 Score=20.35 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=58.9
Q ss_pred HHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--Hhh---hccCCCChH-HHHHHHHHH
Q 032251 4 EVYEAHKNELE-PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGL--SSI---YNYECGSEP-LIQLNEILQ 76 (144)
Q Consensus 4 ~~~~~~~~~l~-~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~--~lr---~~~~vs~pe-ld~l~~~a~ 76 (144)
++|.+.++.+| +++..-+.+++.+-..+.++++-+.+.++..+-.-+...-. .+. +..++.... ++.+.+...
T Consensus 6 ~d~~dfl~lIp~~~i~~i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~pE~~~l~~yL~~~gldv~~~i~~i~~~l~ 85 (179)
T PF06757_consen 6 EDFQDFLDLIPMEEIQDIVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEALPEVKALLDYLESAGLDVYYYINQINDLLG 85 (179)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHcCHHHHHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 67888889999 55555566788888889999999998887666655543211 111 235555443 555544432
Q ss_pred hCCCCc---eeEe-ecCCCCcee---EEEecccc
Q 032251 77 RAPGVF---GARF-SGAGFRGCC---LALVDADR 103 (144)
Q Consensus 77 ~~~Ga~---Gaki-sGaG~GG~v---ial~~~~~ 103 (144)
- +..- .... +|+|+.|.+ +++.|.+.
T Consensus 86 ~-~~~~p~~~~~~~~~~g~~g~~~di~~~lP~~~ 118 (179)
T PF06757_consen 86 L-PPLNPTPSLSCSRGGGLNGFVDDILALLPRDK 118 (179)
T ss_pred C-CcCCCCcccccccCCCHHHHHHHHHHHCCHHH
Confidence 1 2111 1111 777777764 45555444
No 94
>TIGR02027 rpoA DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type. This family consists of the bacterial (and chloroplast) DNA-directed RNA polymerase alpha subunit, encoded by the rpoA gene. The RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The amino terminal domain is involved in dimerizing and assembling the other RNA polymerase subunits into a transcriptionally active enzyme. The carboxy-terminal domain contains determinants for interaction with DNA and with transcriptional activator proteins.
Probab=24.26 E-value=88 Score=25.47 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCC
Q 032251 24 YFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 80 (144)
Q Consensus 24 ~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~G 80 (144)
.+.+-....++..+|++.++..++.|+..+...|..--+..-..++++.+...+ .|
T Consensus 236 ~I~~L~LSvR~~n~Lk~~~I~ti~dL~~~~~~~l~~~~n~G~ksl~ei~~~l~~-~g 291 (297)
T TIGR02027 236 KIEELDLSVRSYNCLKRAGIHTLGELVSKSEEELLKIKNFGKKSLTEIKEKLAE-LG 291 (297)
T ss_pred cHHHhCccHHHHhHHHHcCCcCHHHHHhCCHHHHhhCCCCChhhHHHHHHHHHH-cC
Confidence 466666677888999999999999999988877765555555567888887776 45
No 95
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=24.24 E-value=1.5e+02 Score=22.26 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=42.4
Q ss_pred HHHhhhccCCCChHHHHHHHHHHhC-CC-CceeEeecCC-CC----ceeEEEecc--ccHHHHHHHHHHHhHh
Q 032251 54 GLSSIYNYECGSEPLIQLNEILQRA-PG-VFGARFSGAG-FR----GCCLALVDA--DRAEEAASYVRSEYFE 117 (144)
Q Consensus 54 ~~~lr~~~~vs~peld~l~~~a~~~-~G-a~GakisGaG-~G----G~vial~~~--~~~~~~~~~l~~~y~~ 117 (144)
|..|+-.-+++...++.|++.+.+. .+ .+--++.|.| |+ ..++-+-.+ +...++.+.+.+....
T Consensus 39 HiTL~flGev~e~~~~~l~~~l~~i~~~~~f~i~l~g~g~F~~~~~~rvi~~~v~~~~~L~~L~~~l~~~~~~ 111 (180)
T COG1514 39 HITLKFLGEVDEDKADELIEALARIAAPEPFPITLDGAGSFPNPRRPRVIWVGVEETEELRALAEELERALAR 111 (180)
T ss_pred eEEEEccCCcCchHHHHHHHHHHHhhcCCceEEEEeeEcccCCCCCCcEEEEcCCCcHHHHHHHHHHHHHHHh
Confidence 5577776777777788888777653 22 4667899999 77 566665544 3366666666655444
No 96
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.45 E-value=1.7e+02 Score=24.11 Aligned_cols=30 Identities=30% Similarity=0.466 Sum_probs=19.4
Q ss_pred eEeecCCCC------------ceeEEEecccc--HHHHHHHHHH
Q 032251 84 ARFSGAGFR------------GCCLALVDADR--AEEAASYVRS 113 (144)
Q Consensus 84 akisGaG~G------------G~vial~~~~~--~~~~~~~l~~ 113 (144)
.=|||||.| ||.+++++-+. .++.++.+++
T Consensus 41 vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~ 84 (300)
T KOG1201|consen 41 VLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRK 84 (300)
T ss_pred EEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHh
Confidence 478898866 78787776543 4555555443
No 97
>PRK00068 hypothetical protein; Validated
Probab=23.44 E-value=1.7e+02 Score=28.07 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhh
Q 032251 32 AKGLEAWKSGNSQDFGKLISASGLSSI 58 (144)
Q Consensus 32 ~~~~~aL~~~d~~~lg~lm~~s~~~lr 58 (144)
.++.+|+++|||..+|+.+.+=.+.+.
T Consensus 938 ~~a~~Alk~GDw~~yG~a~~~L~~al~ 964 (970)
T PRK00068 938 NKAIEAQKSGDFAEYGEALKELDDALN 964 (970)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999986555444
No 98
>PHA02599 dsbA double-stranded DNA binding protein; Provisional
Probab=23.36 E-value=2.4e+02 Score=18.99 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=40.8
Q ss_pred CHHH-HHHHHHHHHHHHHHHHHHH-------HHhC-------CCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 032251 14 EPTL-AKRAEHYFTENRRVAKGLE-------AWKS-------GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 75 (144)
Q Consensus 14 ~~~~-~~r~~~~v~e~~r~~~~~~-------aL~~-------~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a 75 (144)
.+++ -.|+..+|.|......-+. -+++ -|-..|++++...|..-|+.++--..|+.+|.+..
T Consensus 12 n~~vhg~~l~~lIkEAS~~kt~ie~y~e~iKdIk~rAK~E~GvdGK~Fnkl~klYHkq~R~~fEae~~Ev~elYD~i 88 (91)
T PHA02599 12 NPAVHGERLAQLIKEASDHKTQIEAYGEMIKDIKDRAKTELGVDGKMFNKLFKLYHKQEREQFEAENDEVVELYDTI 88 (91)
T ss_pred CchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 4566667766655432222 2221 26788999999999999988877777777777654
No 99
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=23.27 E-value=1e+02 Score=19.74 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 032251 42 NSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 75 (144)
Q Consensus 42 d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a 75 (144)
+...|.++++-.|..-|+.++--+.++.++.+..
T Consensus 33 ~gk~Fnkl~~lyHk~~Re~fE~e~ee~~elYD~~ 66 (69)
T PF11126_consen 33 DGKMFNKLLKLYHKQEREEFEAENEEVVELYDAV 66 (69)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999988887787877777654
No 100
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.31 E-value=5.4e+02 Score=22.57 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=26.6
Q ss_pred ccCCCChH-HHHHHHHHHhCCCCceeEeecCCCCceeE
Q 032251 60 NYECGSEP-LIQLNEILQRAPGVFGARFSGAGFRGCCL 96 (144)
Q Consensus 60 ~~~vs~pe-ld~l~~~a~~~~Ga~GakisGaG~GG~vi 96 (144)
.+++.+++ .+.||..|.. .|++-|+|--+- |||.
T Consensus 386 kL~l~Seed~EyiVakAIR-DGvIea~Id~~~--g~m~ 420 (493)
T KOG2581|consen 386 KLGLNSEEDAEYIVAKAIR-DGVIEAKIDHED--GFMQ 420 (493)
T ss_pred HhcCCCchhHHHHHHHHHH-hccceeeecccc--Ccee
Confidence 46777766 7889999998 899999995554 6654
No 101
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=21.99 E-value=1.2e+02 Score=17.19 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=24.2
Q ss_pred HHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCC
Q 032251 54 GLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAG 90 (144)
Q Consensus 54 ~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG 90 (144)
...+.+.+++|.+.+...++...+ .|.+- +..|.|
T Consensus 23 ~~~la~~~~vs~~tv~~~l~~L~~-~g~i~-~~~~~g 57 (60)
T smart00345 23 ERELAAQLGVSRTTVREALSRLEA-EGLVQ-RRPGSG 57 (60)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-CCCEE-EecCCe
Confidence 344666799998888888888887 68643 444443
No 102
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=21.50 E-value=3.1e+02 Score=19.48 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee
Q 032251 67 PLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK 136 (144)
Q Consensus 67 eld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~ 136 (144)
.+.+|.+...+ .|.-..+.-=+- |-++.= +....+.+...+++...+. ||++..+++.+
T Consensus 20 ~MaeLr~~l~~-~Gf~~V~Tyi~S--GNvvf~-~~~~~~~l~~~ie~~l~~~-------fG~~v~v~vrs 78 (137)
T PF08002_consen 20 KMAELREALED-LGFTNVRTYIQS--GNVVFE-SDRDPAELAAKIEKALEER-------FGFDVPVIVRS 78 (137)
T ss_dssp -HHHHHHHHHH-CT-EEEEEETTT--TEEEEE-ESS-HHHHHHHHHHHHHHH--------TT---EEEEE
T ss_pred cHHHHHHHHHH-cCCCCceEEEee--CCEEEe-cCCChHHHHHHHHHHHHHh-------cCCCeEEEEee
Confidence 36788888887 786555544443 555554 6677888888888887774 79888888754
No 103
>PRK09213 pur operon repressor; Provisional
Probab=21.36 E-value=4.4e+02 Score=21.22 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCcee--EeecCCCCceeEEEeccccHHHHHHHHHHHhHh
Q 032251 67 PLIQLNEILQRAPGVFGA--RFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 67 eld~l~~~a~~~~Ga~Ga--kisGaG~GG~vial~~~~~~~~~~~~l~~~y~~ 117 (144)
.+.-+.+...+ .| +|- .+.||.+|=-.+-....+++.++.+.|.+...+
T Consensus 43 d~~i~~~~~~~-~~-~g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~ 93 (271)
T PRK09213 43 DLVIIKETFEK-QG-IGTLETVPGAAGGVKYIPSISEEEAREFVEELCERLSE 93 (271)
T ss_pred hHHHHHHHHHh-cC-CceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 45455555554 66 665 567777664444455556677777777766544
No 104
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=20.71 E-value=2.1e+02 Score=23.77 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHHH
Q 032251 66 EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 112 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~ 112 (144)
..+..|.+++.+ .|.--.++|--. +..+.-++.++++.+.+.++
T Consensus 44 eqLr~LAdiaek-yg~g~i~lTtrQ--nI~l~~I~~edl~~i~~~L~ 87 (341)
T TIGR02066 44 DTLRKLCDIADK-YSDGYLRWTIRN--NVEFLVSDESKIQPLIDELE 87 (341)
T ss_pred HHHHHHHHHHHH-hCCCeEEEeccC--CEEEecCCHHHHHHHHHHHH
Confidence 344444444444 332223444322 44444444444444444443
No 105
>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.
Probab=20.33 E-value=1.7e+02 Score=24.10 Aligned_cols=62 Identities=15% Similarity=0.024 Sum_probs=44.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhhhccC--CCChHHHHHHHHHHh
Q 032251 11 NELEPTLAKRAEHYFTENRRVAKGLEAWKSG---NSQDFGKLISASGLSSIYNYE--CGSEPLIQLNEILQR 77 (144)
Q Consensus 11 ~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~---d~~~lg~lm~~s~~~lr~~~~--vs~peld~l~~~a~~ 77 (144)
+.|.++ ..|+.+|=.+..+- ..|.+. ..+.|-++++.....||+.++ +|.-.-+.+++.|+.
T Consensus 158 P~L~De-VwRLe~Igk~G~~h----k~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~t 224 (299)
T PF07887_consen 158 PSLDDE-VWRLEKIGKDGAFH----KRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKT 224 (299)
T ss_pred CCCCCc-hhhhhhccccCHHH----HHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHh
Confidence 345555 48888888776543 334433 577788888877788998777 777777899999986
No 106
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=20.07 E-value=1.6e+02 Score=18.57 Aligned_cols=42 Identities=12% Similarity=-0.037 Sum_probs=31.4
Q ss_pred HhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEec
Q 032251 56 SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 100 (144)
Q Consensus 56 ~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~ 100 (144)
.+.+.++++.++++.++-.+.. .|.+.+||---. |++..-..
T Consensus 29 ~i~~~~~l~~~~vE~~i~~~i~-~~~l~~~ID~~~--~~v~~~~~ 70 (88)
T smart00088 29 DLAKLLGLSVPEVEKLVSKAIR-DGEISAKIDQVN--GIVEFEEV 70 (88)
T ss_pred HHHHHhCcCHHHHHHHHHHHHH-CCCeEEEEcCcC--CEEEECCC
Confidence 3445678888888887777777 789999998666 77777543
No 107
>smart00753 PAM PCI/PINT associated module.
Probab=20.07 E-value=1.6e+02 Score=18.57 Aligned_cols=42 Identities=12% Similarity=-0.037 Sum_probs=31.4
Q ss_pred HhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEec
Q 032251 56 SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 100 (144)
Q Consensus 56 ~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~ 100 (144)
.+.+.++++.++++.++-.+.. .|.+.+||---. |++..-..
T Consensus 29 ~i~~~~~l~~~~vE~~i~~~i~-~~~l~~~ID~~~--~~v~~~~~ 70 (88)
T smart00753 29 DLAKLLGLSVPEVEKLVSKAIR-DGEISAKIDQVN--GIVEFEEV 70 (88)
T ss_pred HHHHHhCcCHHHHHHHHHHHHH-CCCeEEEEcCcC--CEEEECCC
Confidence 3445678888888887777777 789999998666 77777543
Done!