Query 032251
Match_columns 144
No_of_seqs 120 out of 1021
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 1.6E-31 5.4E-36 228.4 14.5 126 16-143 381-517 (520)
2 2a2c_A N-acetylgalactosamine k 99.9 9E-27 3.1E-31 196.9 14.7 125 16-144 347-475 (478)
3 1pie_A Galactokinase; galactos 99.9 1.8E-25 6.2E-30 185.5 18.1 133 4-144 282-416 (419)
4 1wuu_A Galactokinase; galactos 99.9 1.7E-24 5.8E-29 178.5 17.3 131 3-144 267-397 (399)
5 2cz9_A Probable galactokinase; 99.9 3.1E-24 1.1E-28 172.9 17.4 124 12-143 227-350 (350)
6 3gon_A Phosphomevalonate kinas 99.8 3.3E-20 1.1E-24 147.8 11.4 88 24-113 229-318 (335)
7 1kvk_A MK, mevalonate kinase; 99.8 3.9E-20 1.3E-24 152.1 11.3 115 16-143 263-379 (395)
8 3k85_A D-glycero-D-manno-hepto 99.8 3.3E-20 1.1E-24 151.5 6.0 93 18-113 228-321 (357)
9 4hac_A Mevalonate kinase; GHMP 99.7 7.7E-17 2.6E-21 129.7 15.2 97 31-143 223-320 (321)
10 3k17_A LIN0012 protein; protei 99.7 9.8E-17 3.4E-21 131.4 11.8 90 21-113 244-341 (365)
11 2hfs_A Mevalonate kinase, puta 99.7 2.5E-16 8.4E-21 126.1 13.1 103 30-143 229-332 (332)
12 2x7i_A Mevalonate kinase; tran 99.7 3.8E-16 1.3E-20 123.8 11.9 85 29-115 212-297 (308)
13 2pg9_A Phosphomevalonate kinas 99.7 9.1E-16 3.1E-20 124.2 12.9 97 28-139 235-333 (337)
14 2oi2_A Mevalonate kinase; enzy 99.6 1.9E-15 6.7E-20 118.5 13.1 83 31-115 200-283 (292)
15 1kkh_A Mevalonate kinase; mixe 99.6 9E-14 3.1E-18 110.5 14.0 77 34-113 229-305 (317)
16 1h72_C HK, homoserine kinase; 99.5 8.3E-14 2.9E-18 109.6 9.9 102 22-144 193-296 (296)
17 3qt5_A Mevalonate diphosphate 99.4 2.7E-12 9.1E-17 103.9 12.9 106 24-144 214-331 (332)
18 3hul_A HSK, HK, homoserine kin 99.3 6.9E-12 2.4E-16 100.0 11.3 102 24-143 184-288 (298)
19 2gs8_A Mevalonate pyrophosphat 99.3 2.1E-11 7.3E-16 97.1 13.2 99 27-143 209-317 (317)
20 3pyf_A 4-diphosphocytidyl-2-C- 99.1 1.5E-10 5.2E-15 92.5 7.6 97 30-144 202-300 (306)
21 2hke_A Diphosphomevalonate dec 98.8 6.2E-08 2.1E-12 79.4 13.1 89 27-117 221-320 (380)
22 1fi4_A Mevalonate 5-diphosphat 98.7 1E-07 3.4E-12 79.2 11.4 87 28-116 251-348 (416)
23 3f0n_A Mevalonate pyrophosphat 98.7 3.8E-07 1.3E-11 75.9 12.8 94 22-117 240-346 (414)
24 3lto_A Mevalonate diphosphate 98.6 3.1E-07 1E-11 74.2 11.3 89 27-117 212-310 (323)
25 1uek_A 4-(cytidine 5'-diphosph 98.3 1E-06 3.4E-11 68.6 7.0 59 64-140 209-268 (275)
26 2v8p_A 4-diphosphocytidyl-2-C- 97.9 7.6E-07 2.6E-11 69.3 -1.2 70 30-108 188-259 (271)
27 2ww4_A 4-diphosphocytidyl-2C-m 97.2 0.00017 5.9E-09 56.5 3.2 42 65-111 219-261 (283)
28 3m05_A Uncharacterized protein 76.6 6.2 0.00021 26.8 5.5 51 67-118 17-72 (114)
29 2cz4_A Hypothetical protein TT 71.6 15 0.00051 24.8 6.5 52 65-117 34-99 (119)
30 2j9c_A GLNK1, hypothetical nit 68.8 13 0.00046 24.8 5.8 51 66-117 13-85 (119)
31 2eg2_A Nitrogen regulatory pro 68.4 22 0.00075 23.3 7.2 66 66-139 11-98 (112)
32 1vfj_A Nitrogen regulatory pro 66.7 22 0.00076 23.4 6.5 51 66-117 11-83 (116)
33 1o51_A Hypothetical protein TM 64.3 14 0.00047 24.8 5.1 50 65-115 29-98 (114)
34 2ns1_B Nitrogen regulatory pro 62.2 31 0.0011 22.8 8.1 66 66-139 15-102 (116)
35 2o66_A PII protein; regulation 61.1 37 0.0013 23.3 7.3 51 66-117 23-96 (135)
36 3bzq_A Nitrogen regulatory pro 59.9 33 0.0011 22.4 6.6 66 66-139 13-100 (114)
37 2gw8_A PII signal transduction 55.9 40 0.0014 22.1 6.9 66 66-139 13-100 (114)
38 1hwu_A PII protein; herbaspiri 54.0 42 0.0015 21.8 7.3 51 66-117 11-83 (112)
39 3k4g_A DNA-directed RNA polyme 52.3 10 0.00036 24.4 2.6 56 31-87 20-76 (86)
40 3t9z_A GLNK3, nitrogen regulat 49.1 57 0.0019 21.8 6.2 66 66-139 11-98 (118)
41 3ncq_A Nitrogen regulatory pro 46.6 60 0.0021 21.7 6.0 66 66-139 11-98 (119)
42 2a0b_A HPT domain; sensory tra 41.8 71 0.0024 20.8 7.5 72 1-76 12-86 (125)
43 2gff_A LSRG protein; dimeric a 35.7 80 0.0027 19.7 5.5 73 69-141 23-97 (106)
44 1z3e_B DNA-directed RNA polyme 33.6 18 0.00061 22.4 1.5 49 32-81 18-66 (73)
45 3h3m_A Flagellar protein FLIT; 32.5 34 0.0012 23.4 2.9 54 12-65 68-123 (126)
46 3dfe_A Putative PII-like signa 32.0 63 0.0022 21.3 4.1 61 66-136 16-96 (111)
47 1y0h_A Hypothetical protein RV 30.4 95 0.0032 18.9 5.1 42 70-112 28-70 (102)
48 2i9o_A MHB8A peptide; beta-hai 30.0 46 0.0016 17.4 2.4 11 104-114 23-33 (37)
49 1xn7_A Hypothetical protein YH 30.0 60 0.002 20.0 3.5 33 56-90 21-55 (78)
50 3okz_A Putative uncharacterize 25.7 1.6E+02 0.0054 22.9 6.1 79 37-115 197-278 (306)
51 3gfk_B DNA-directed RNA polyme 25.1 16 0.00056 23.0 0.2 49 32-81 25-73 (79)
52 4hyz_A Uncharacterized protein 24.7 75 0.0026 20.8 3.5 47 30-82 19-65 (114)
53 2of5_H Leucine-rich repeat and 24.6 35 0.0012 22.7 1.8 6 35-40 78-83 (118)
54 3ggo_A Prephenate dehydrogenas 23.5 2E+02 0.0067 22.0 6.2 26 33-59 286-311 (314)
55 4dn9_A Antibiotic biosynthesis 23.1 72 0.0025 21.0 3.2 70 71-140 44-115 (122)
56 3a7m_A Flagellar protein FLIT; 22.9 1.1E+02 0.0038 20.5 4.1 42 12-53 55-96 (122)
57 4aff_A Nitrogen regulatory pro 21.9 1.8E+02 0.006 19.1 8.1 68 66-141 11-100 (116)
58 4e17_B Catenin alpha-1; four h 21.6 1.1E+02 0.0038 16.7 3.2 20 20-39 13-32 (40)
59 2r25_A Phosphorelay intermedia 21.5 2.2E+02 0.0077 20.2 6.7 50 2-51 10-64 (167)
60 3mhy_A PII-like protein PZ; PI 21.4 88 0.003 20.4 3.3 20 95-114 4-23 (112)
61 3ce8_A Putative PII-like nitro 21.2 1.9E+02 0.0065 19.4 5.0 66 67-142 34-118 (120)
62 2ypd_A Probable JMJC domain-co 20.8 2.8E+02 0.0094 22.6 6.7 54 90-143 230-305 (392)
63 2o7a_A Lysozyme; protein foldi 20.7 2E+02 0.0068 19.3 6.3 60 12-77 32-97 (124)
64 3p0b_A TT1467 protein; glycosi 20.4 3.9E+02 0.013 22.6 9.0 111 14-134 89-201 (540)
65 3e8o_A Uncharacterized protein 20.3 1.8E+02 0.0062 18.6 6.9 72 70-141 42-115 (119)
66 1tuv_A Protein YGIN; menadione 20.2 1.8E+02 0.0061 18.5 6.0 74 69-143 25-108 (114)
67 1rzw_A Protein AF2095(GR4); be 20.1 1.4E+02 0.0049 20.1 4.2 40 61-101 53-99 (123)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.97 E-value=1.6e-31 Score=228.41 Aligned_cols=126 Identities=30% Similarity=0.529 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeec
Q 032251 16 TLAKRAEHYFTENRRVAKGLEAWKSG-------NSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 88 (144)
Q Consensus 16 ~~~~r~~~~v~e~~r~~~~~~aL~~~-------d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisG 88 (144)
.+++|++|+++|+.||.+++++|+++ |++.||++|++||.+||++|+||||++|.|++.|++ .|++|+||||
T Consensus 381 ~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~-~Ga~GarlTG 459 (520)
T 3v2u_C 381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALA-NGSFGSRLTG 459 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh-CCCCEEEEec
Confidence 37999999999999999999999997 599999999999999999999999999999999998 8999999999
Q ss_pred CCCCceeEEEe---ccccHHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEeecCCCeec
Q 032251 89 AGFRGCCLALV---DADRAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGDCARV 143 (144)
Q Consensus 89 aG~GG~vial~---~~~~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~~Ga~~ 143 (144)
||||||+|+|+ +++.++++++.|.+.|+++. |++.+ -+.++.+|+++|++||++
T Consensus 460 aG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~-~~~~~~~~~~~p~~GA~i 517 (520)
T 3v2u_C 460 AGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTD-EELKDAIIVSKPALGTCL 517 (520)
T ss_dssp SCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCH-HHHHHHEEECCCCCCSEE
T ss_pred CCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCcccc-ccCCCeEEEecCCCceEE
Confidence 99999999999 88899999999999998763 33222 144688999999999987
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.94 E-value=9e-27 Score=196.86 Aligned_cols=125 Identities=30% Similarity=0.490 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCC
Q 032251 16 TLAKRAEHYFTENRRVAKGLEAWKS---GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFR 92 (144)
Q Consensus 16 ~~~~r~~~~v~e~~r~~~~~~aL~~---~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~G 92 (144)
..++|+.|++.|+.|+..++++|.+ +|++.||++|+++|.++|+.|++|||++|+|++.+++ .|++|+||||||||
T Consensus 347 ~~~~ra~h~~~e~~rv~~~~~aL~~~~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~-~Ga~GarltGAG~G 425 (478)
T 2a2c_A 347 KLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWG 425 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-CCCcEEEeccCCCc
Confidence 4678999999999999999999999 9999999999999999999899999999999999998 89999999999999
Q ss_pred ceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcC-CCceEEEeecCCCeecC
Q 032251 93 GCCLALVDADRAEEAASYVRSEYFELQPELASQLN-ADSAVLICKPGDCARVI 144 (144)
Q Consensus 93 G~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~-~~~~~~~~~~~~Ga~~~ 144 (144)
||+++|++++.+++++++|++.|++.++.. ++ ..+.+|+++|++||+++
T Consensus 426 G~viaLv~~~~~~~~~~~l~~~y~~~~~~~---~~~~~~~~~~~~p~~Ga~~~ 475 (478)
T 2a2c_A 426 GCTVSMVPADKLPSFLANVHKAYYQRSDGS---LAPEKQSLFATKPGGGALVL 475 (478)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHC------------CCSEEEECCBCCCEEE
T ss_pred cEEEEEEcHHHHHHHHHHHHHHHHHhcCcc---ccCCCCcEEEEcCCCCeEee
Confidence 999999999889999999999998863110 02 24689999999999863
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.94 E-value=1.8e-25 Score=185.52 Aligned_cols=133 Identities=34% Similarity=0.499 Sum_probs=120.3
Q ss_pred HHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCC-CC
Q 032251 4 EVYEAHKNELE-PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAP-GV 81 (144)
Q Consensus 4 ~~~~~~~~~l~-~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~-Ga 81 (144)
++++++++.|+ +..++|+.|.+.|+.|+..++.+|.++|++.||++|+++|.++++.|++++|++|++++.+++ . |+
T Consensus 282 ~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~-~~Ga 360 (419)
T 1pie_A 282 EEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQK-QAGV 360 (419)
T ss_dssp HHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-STTE
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-cCCC
Confidence 34455555563 557889999999999999999999999999999999999999999899999999999999998 6 99
Q ss_pred ceeEeecCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 82 FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 82 ~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
+|+||||||||||+++|++++.++++.+.|.+.|.+. ++.++.+|+++|++||+++
T Consensus 361 ~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~-------~g~~~~~~~~~~~~Ga~v~ 416 (419)
T 1pie_A 361 LGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV-------VGYPASFYVAQIGSGSTKL 416 (419)
T ss_dssp EEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHH-------HSSCCEEEECCBCCCSBCC
T ss_pred ceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHh-------cCCCCeEEEEcCCCCeeec
Confidence 9999999999999999999988999999999999874 5888999999999999874
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.92 E-value=1.7e-24 Score=178.52 Aligned_cols=131 Identities=31% Similarity=0.507 Sum_probs=118.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCc
Q 032251 3 KEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVF 82 (144)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~ 82 (144)
.+++.++++.+++..++|+.|.+.|+.|+..++.+|.++|++.||++|+++|.++++.+++++|++|++++.+++..|++
T Consensus 267 ~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ 346 (399)
T 1wuu_A 267 LEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVY 346 (399)
T ss_dssp HHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCce
Confidence 34455566778888899999999999999999999999999999999999999999889999999999999999735999
Q ss_pred eeEeecCCCCceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 83 GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 83 GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
|+||||+|||||+++|++++.++++.+.|.+.| +..+.+|+++|++|++++
T Consensus 347 ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~Ga~~~ 397 (399)
T 1wuu_A 347 GSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY-----------GGTATFYLSQAADGAKVL 397 (399)
T ss_dssp EEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC-----------SSCCEEEEECCCCCSEEC
T ss_pred EEeeecCCCccEEEEEEccchHHHHHHHHHHHh-----------CCCCcEEEEcCCCCeeec
Confidence 999999999999999999888899999888765 456899999999999874
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.92 E-value=3.1e-24 Score=172.87 Aligned_cols=124 Identities=31% Similarity=0.453 Sum_probs=116.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCC
Q 032251 12 ELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGF 91 (144)
Q Consensus 12 ~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~ 91 (144)
.+++..++|..|.+.|..|+..++.+|.++|++.||++|+.+|+++++.+++++|++|++++.+++ .|++|+||||+||
T Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~-~Ga~ga~lsGaG~ 305 (350)
T 2cz9_A 227 KLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGARLTGAGF 305 (350)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSCS
T ss_pred hCCHHHHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-cCCCEEEEecCCC
Confidence 478877889999999999999999999999999999999999999999899999999999999998 7999999999999
Q ss_pred CceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeec
Q 032251 92 RGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 143 (144)
Q Consensus 92 GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 143 (144)
|||+++|++++.++++.++|.+.|++. ||..+.+|+++|++||++
T Consensus 306 G~~v~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 306 GGSAIALVDKEDAETIGEEILREYLKR-------FPWKARHFIVEPSDGVGI 350 (350)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHH-------CCSCCEEEEECEECCSBC
T ss_pred ceEEEEEEchhhHHHHHHHHHHHHHHh-------hCCCCcEEEecCCCCCCC
Confidence 999999999888999999999999874 588899999999999974
No 6
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.83 E-value=3.3e-20 Score=147.81 Aligned_cols=88 Identities=20% Similarity=0.129 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhh-ccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccc
Q 032251 24 YFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY-NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 102 (144)
Q Consensus 24 ~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~-~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~ 102 (144)
+..+..++.++..+|.++|++.||++|+++|.+|++ .+++|+|++|+|++.+++ .|+ |+||||||||||+|+|++++
T Consensus 229 ~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~-~g~-~akltGAG~Ggc~ial~~~~ 306 (335)
T 3gon_A 229 LTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQA-VAKSSGAGGGDCGIALSFDA 306 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSE-EEEECTTCSSSEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHh-CCc-EEEEccccchheEEEEECCH
Confidence 445566788899999999999999999999999998 568999999999999998 785 89999999999999999754
Q ss_pred c-HHHHHHHHHH
Q 032251 103 R-AEEAASYVRS 113 (144)
Q Consensus 103 ~-~~~~~~~l~~ 113 (144)
. .+.+.++|++
T Consensus 307 ~~~~~i~~~~~~ 318 (335)
T 3gon_A 307 QSTKTLKNRWAD 318 (335)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3 4444444443
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.82 E-value=3.9e-20 Score=152.11 Aligned_cols=115 Identities=15% Similarity=0.125 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCce
Q 032251 16 TLAKRAEHYFTENRRVAKG-LEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGC 94 (144)
Q Consensus 16 ~~~~r~~~~v~e~~r~~~~-~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~ 94 (144)
..++|+.|++.+..++... +.+|.++|++.||++|+++|.++++ |++++|++|++++.+++ .|+ |+||||||||||
T Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~-~Ga-ga~~sGaG~Gg~ 339 (395)
T 1kvk_A 263 PLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAA-HGL-HSKLTGAGGGGC 339 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHH-TTC-EEEECSSCSSSE
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCC-ceeeccCCCCCE
Confidence 3678889999998887776 6788889999999999999999997 99999999999999998 799 999999999999
Q ss_pred eEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCCeec
Q 032251 95 CLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 143 (144)
Q Consensus 95 vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 143 (144)
+++|++++..+++++.+.+.|.+. + ..+|+++ ++.|+++
T Consensus 340 v~~l~~~~~~~~~~~~~~~~~~~~--------g--~~~~~~~~~~~G~~v 379 (395)
T 1kvk_A 340 GITLLKPGLERAKVEAAKQALTGC--------G--FDCWETSIGAPGVSM 379 (395)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHT--------T--CEEEEEEESCCCSEE
T ss_pred EEEEecCCCCHHHHHHHHHHHHHc--------C--CEEEEEecCCCcEEE
Confidence 999999887788888888888763 4 3478888 7899876
No 8
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=3.3e-20 Score=151.49 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhc-cCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeE
Q 032251 18 AKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCL 96 (144)
Q Consensus 18 ~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~-~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vi 96 (144)
+.|+.|.+.+ ++.+++.+|.++|++.||++|+++|.++++. +++|+|++|+|++.+++ .|++|+||||||+|||++
T Consensus 228 ~~~~~~~i~~--~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~-~Ga~GaklsGaG~gG~vi 304 (357)
T 3k85_A 228 AIEAMHKIKQ--SAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGFIM 304 (357)
T ss_dssp TTHHHHHHHH--HHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTT-SCCSEEEECCCC---CEE
T ss_pred HHHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-cCCeEeEecccCCCCEEE
Confidence 3456777765 7788999999999999999999999999986 99999999999999998 899999999999999999
Q ss_pred EEeccccHHHHHHHHHH
Q 032251 97 ALVDADRAEEAASYVRS 113 (144)
Q Consensus 97 al~~~~~~~~~~~~l~~ 113 (144)
+|++++.++++.++|++
T Consensus 305 al~~~~~~~~~~~~l~~ 321 (357)
T 3k85_A 305 FVVEPTRKEEVVRALNN 321 (357)
T ss_dssp EECCHHHHHHHHHHHHT
T ss_pred EEecHHHHHHHHHHHHH
Confidence 99998878888777764
No 9
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.73 E-value=7.7e-17 Score=129.70 Aligned_cols=97 Identities=26% Similarity=0.343 Sum_probs=82.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHH
Q 032251 31 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASY 110 (144)
Q Consensus 31 ~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~ 110 (144)
+..+..+|.++|++.|+++|+.+|. +++.+++++|++|++++.+++ .|++|+||||+|+|||+++|++++.++++.+.
T Consensus 223 ~~~~~~al~~~d~~~lg~~~~~~~~-~~~~~~v~~p~l~~l~~~a~~-~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~ 300 (321)
T 4hac_A 223 SRIGEQLVLSGDYASIGRLMNVNQG-LLDALGVNILELSQLIYSARA-AGAFGAKITGAGGGGCMVALTAPEKCNQVAEA 300 (321)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-HHHHHTCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEECSTTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHHHHH-CCCCEEEECccCCCCEEEEEcCHHHHHHHHHH
Confidence 4567899999999999999999986 555699999999999999998 89999999999999999999977778887777
Q ss_pred HHHHhHhhchhHhhhcCCCceEEEee-cCCCeec
Q 032251 111 VRSEYFELQPELASQLNADSAVLICK-PGDCARV 143 (144)
Q Consensus 111 l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 143 (144)
|++. + ..+|+++ ..+|++|
T Consensus 301 l~~~------------g--~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 301 VAGA------------G--GKVTITKPTEQGLKV 320 (321)
T ss_dssp HHHT------------T--CEEEEECBCSCSSEE
T ss_pred HHhC------------C--CeEEEEEECCCceec
Confidence 7642 3 4678887 5578876
No 10
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.70 E-value=9.8e-17 Score=131.41 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=77.6
Q ss_pred HHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCC------CChHHHHHHHHHHhCCCCceeEeecCCCCc
Q 032251 21 AEHYFTENR-RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC------GSEPLIQLNEILQRAPGVFGARFSGAGFRG 93 (144)
Q Consensus 21 ~~~~v~e~~-r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~v------s~peld~l~~~a~~~~Ga~GakisGaG~GG 93 (144)
..+++.+.. ++.+++.+|.++|++.||++|+++|.+|++ +++ ++|++|+|++.+++ .|++ +|||||||||
T Consensus 244 ~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~-l~v~~~~~is~p~ld~l~~~a~~-~Ga~-ak~sGAGgGg 320 (365)
T 3k17_A 244 YQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQE-LGTKAGVNIETSLLKELADSAEN-MGGA-GKSSGSGGGD 320 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHTCCCSCHHHHHHHHHHHH-TTSE-EEECTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-hhhhcCCcccCHHHHHHHHHHHh-cCCE-EEecCCCCCC
Confidence 567888854 568899999999999999999999999997 877 99999999999998 8998 9999999999
Q ss_pred eeEEEeccc-cHHHHHHHHHH
Q 032251 94 CCLALVDAD-RAEEAASYVRS 113 (144)
Q Consensus 94 ~vial~~~~-~~~~~~~~l~~ 113 (144)
|+|+|++++ .++++.+++++
T Consensus 321 ~vial~~~~~~~~~l~~~l~~ 341 (365)
T 3k17_A 321 CGIAFSKTKELAEKLVNEWEK 341 (365)
T ss_dssp EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHH
Confidence 999999864 35555555544
No 11
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.69 E-value=2.5e-16 Score=126.11 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHH
Q 032251 30 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAA 108 (144)
Q Consensus 30 r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~ 108 (144)
++.++..+|.++|++.|+++|+.+|..++. +++++|+++++++.+++ .|++|+||||+|+|||+++|++++. ++++.
T Consensus 229 ~~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~ 306 (332)
T 2hfs_A 229 IVSQAREALQKGDLQRLGQLMNANHDLCRQ-IDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAASSDQRDAIV 306 (332)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHH-TTCSEEEEESSCSSSEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCCceEEeccCCCCcEEEEEecCcccHHHHH
Confidence 456788999999999999999999987775 89999999999999998 8999999999999999999998764 67888
Q ss_pred HHHHHHhHhhchhHhhhcCCCceEEEeecCCCeec
Q 032251 109 SYVRSEYFELQPELASQLNADSAVLICKPGDCARV 143 (144)
Q Consensus 109 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 143 (144)
+.+.+.|.+. ++ ...+.+.|++||++
T Consensus 307 ~~l~~~~~~~--------~~-~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 307 KGLKAKCPEA--------KF-IWRYTVQPSAASNL 332 (332)
T ss_dssp HHHHHHCTTC--------CE-EEEEEECCSCC---
T ss_pred HHHHHHHhcC--------Cc-eEEEEeccCCCCCC
Confidence 8888877652 21 22355679999874
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.67 E-value=3.8e-16 Score=123.79 Aligned_cols=85 Identities=15% Similarity=0.204 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecc-ccHHHH
Q 032251 29 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEA 107 (144)
Q Consensus 29 ~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~ 107 (144)
.++.+++.+|.++|++.|+++|+++|..+++ +++++|+++++++.+++ .|++|+||||+|+|||+++|+++ +.++++
T Consensus 212 ~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~ 289 (308)
T 2x7i_A 212 KLVLRASDVIEHHKFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKDLPTAKNI 289 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHH-TTCSEEEESBTTTCSSEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH-CCCcEEEeeccCCCcEEEEEeCChhHHHHH
Confidence 4677888999999999999999999999998 89999999999999998 89999999999999999999987 567777
Q ss_pred HHHHHHHh
Q 032251 108 ASYVRSEY 115 (144)
Q Consensus 108 ~~~l~~~y 115 (144)
.+.+++.|
T Consensus 290 ~~~l~~~~ 297 (308)
T 2x7i_A 290 VKAVEKAG 297 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 77776643
No 13
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.66 E-value=9.1e-16 Score=124.22 Aligned_cols=97 Identities=21% Similarity=0.140 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhcc-CCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccc-cHH
Q 032251 28 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY-ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAE 105 (144)
Q Consensus 28 ~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~-~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~ 105 (144)
..++.+++.+|.++|++.||++|+.+|.++++.. ++++|++|+|++.+++ .|++ +||||||||||+++|++++ .++
T Consensus 235 ~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~-~Ga~-ak~sGaGgGg~vial~~~~~~~~ 312 (337)
T 2pg9_A 235 KETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQAV-AKSSGAGGGDCGIALSFDAQSTK 312 (337)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSEE-EEECTTCSSSEEEEEECSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHH-CCCE-EEEeCCCCccEEEEEECCHHHHH
Confidence 4566789999999999999999999999999633 3999999999999998 7999 9999999999999999764 355
Q ss_pred HHHHHHHHHhHhhchhHhhhcCCCceEEEeecCC
Q 032251 106 EAASYVRSEYFELQPELASQLNADSAVLICKPGD 139 (144)
Q Consensus 106 ~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 139 (144)
++.++|++ . |..+ .|+.+.++
T Consensus 313 ~~~~~l~~----~--------g~~~-~~~~~~~~ 333 (337)
T 2pg9_A 313 TLKNRWAD----L--------GIEL-LYQERIGH 333 (337)
T ss_dssp HHHHHHHH----T--------TCEE-EEEEEC--
T ss_pred HHHHHHHH----C--------CCEE-EEEeeccc
Confidence 55554443 2 6555 46665544
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.65 E-value=1.9e-15 Score=118.47 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=74.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecc-ccHHHHHH
Q 032251 31 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAAS 109 (144)
Q Consensus 31 ~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~~~ 109 (144)
+..+..+|.++|++.|+++|+++|..+++ +++++|+++++++.+++ .|++|+||||+|+|||+++|+++ +.++++.+
T Consensus 200 ~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~ 277 (292)
T 2oi2_A 200 TQQAEIAISQKDAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALS-HGALGAKMSGGGLGGCIIALVTNLTHAQELAE 277 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHT-TTCSEEEEESSSSSSEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHh-CCCceeeeccCCCCcEEEEEecCchHHHHHHH
Confidence 45778999999999999999999999987 79999999999999998 89999999999999999999986 56777777
Q ss_pred HHHHHh
Q 032251 110 YVRSEY 115 (144)
Q Consensus 110 ~l~~~y 115 (144)
.+++.+
T Consensus 278 ~l~~~~ 283 (292)
T 2oi2_A 278 RLEEKG 283 (292)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 777654
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.55 E-value=9e-14 Score=110.50 Aligned_cols=77 Identities=31% Similarity=0.443 Sum_probs=67.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccccHHHHHHHHHH
Q 032251 34 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 113 (144)
Q Consensus 34 ~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~ 113 (144)
...++..+|++.|+++|+++|..+++ +++++|+++++++.+++ .| +|+||||+|+|||+++|++++.++++.+++++
T Consensus 229 ~~~a~~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~-~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~~ 305 (317)
T 1kkh_A 229 IDEALKIKNKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNR-FG-FGAKLTGAGGGGCVIILVNEEKEKELLKELNK 305 (317)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHH-HS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHh-cC-ceeEEeecCCCCEEEEEechhhHHHHHHHHHh
Confidence 45778889999999999999988775 89999999999999998 79 99999999999999999988777776666553
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.50 E-value=8.3e-14 Score=109.59 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHH--HHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEe
Q 032251 22 EHYFTENRRVAKGLEAWKSGNSQDFGKLI--SASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 99 (144)
Q Consensus 22 ~~~v~e~~r~~~~~~aL~~~d~~~lg~lm--~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~ 99 (144)
.+.+.+..++..++.+|.++|++.||++| +..|+.++. +++|+++++++.+++ . ++|++|||+| +|+++|+
T Consensus 193 ~~~~~~~~~~~~~~~al~~~d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~-~-a~ga~~sGsG--~~v~~l~ 265 (296)
T 1h72_C 193 KDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKD-K-VYGITISGSG--PSIIAFP 265 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTT-T-EEEEEECTTS--SCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHh-h-cceEEEecCC--hheEEEe
Confidence 47788888888899999999999999999 666666664 679999999999998 6 8999999999 6999999
Q ss_pred ccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeecC
Q 032251 100 DADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 144 (144)
Q Consensus 100 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 144 (144)
+++.++++.+.+++.|.. +++++++.|++++
T Consensus 266 ~~~~~~~~~~~l~~~~~~--------------~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 266 KEEFIDEVENILRDYYEN--------------TIRTEVGKGVEVV 296 (296)
T ss_dssp CGGGHHHHHHHHHHHCSC--------------EEEECBCCCCEEC
T ss_pred cHHHHHHHHHHHHHhccC--------------ceeccCCCCeEeC
Confidence 777788888888875532 1267789999875
No 17
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.41 E-value=2.7e-12 Score=103.90 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=84.6
Q ss_pred HHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCC-------CChHHHHHHHHHH---hCCCCceeEeecCCCC
Q 032251 24 YFTENR-RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-------GSEPLIQLNEILQ---RAPGVFGARFSGAGFR 92 (144)
Q Consensus 24 ~v~e~~-r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~v-------s~peld~l~~~a~---~~~Ga~GakisGaG~G 92 (144)
.+.+.. ++..++.+|.++|++.|+++|.+++..|++.|.- -+|+++++++.+. + .|++|+.+||+|
T Consensus 214 ~v~~~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~-~Ga~~a~~SGaG-- 290 (332)
T 3qt5_A 214 WLDHVDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRK-ANLPCYFTMDAG-- 290 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS--
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHh-CCCcEEEEeCCC--
Confidence 344444 7888999999999999999998666566654433 2689999988885 6 899999999888
Q ss_pred ceeEEEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEe-ecCCCeecC
Q 032251 93 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLIC-KPGDCARVI 144 (144)
Q Consensus 93 G~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~-~~~~Ga~~~ 144 (144)
||+++|++++.++++.+.|++.|. ...++++ +|+.|++++
T Consensus 291 Ptv~~l~~~~~a~~v~~~l~~~~~------------~~~~~v~~~~g~G~~~~ 331 (332)
T 3qt5_A 291 PNVKVLVEKKNKQAVMEQFLKVFD------------ESKIIASDIISSGVEII 331 (332)
T ss_dssp SCEEEEEEHHHHHHHHHHHHTTSC------------GGGEEEEEBCSSCCEEC
T ss_pred CcEEEEECHHHHHHHHHHHHHhCC------------CceEEEeccccCCcEec
Confidence 999999988778888887776543 2578888 899999874
No 18
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.35 E-value=6.9e-12 Score=99.96 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecc
Q 032251 24 YFTENRRVAKGLEAWKSGNSQDFGKLISA--SGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 101 (144)
Q Consensus 24 ~v~e~~r~~~~~~aL~~~d~~~lg~lm~~--s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~ 101 (144)
.+.+..++..++.+|.++|++.|+++|+. .|+..+... +|+++++++.+++ .|++|++|||+| +|+++|+++
T Consensus 184 ~~~~~~~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~~~---~p~l~~l~~~~~~-~Ga~ga~~SGsG--ptv~al~~~ 257 (298)
T 3hul_A 184 AVQASSIANVMIAAILRNDMTLAGEMMERDLWHEKYRSQL---VPHLAQIRDVAKN-QGAYAACLSGAG--PTVLVFAPR 257 (298)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHTCCCC-----CTT---GGGHHHHHHHHHT-TTCCEEEECTTS--SCEEEEECG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHHhh---CchHHHHHHHHHH-CCCEEEEEeccc--hheEEEECH
Confidence 45556677788999999999999999973 244555332 8999999999998 899999999999 899999987
Q ss_pred ccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEee-cCCCeec
Q 032251 102 DRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 143 (144)
Q Consensus 102 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~ 143 (144)
+.++++.+.+++. +....+++++ ...|++|
T Consensus 258 ~~a~~v~~~l~~~------------~~~~~~~~~~~~~~Ga~v 288 (298)
T 3hul_A 258 NLANKLQTSLQTL------------EIDADVLLLDVEGSGAEV 288 (298)
T ss_dssp GGHHHHHHHHHTT------------CCSSEEEEEEBCCCCCEE
T ss_pred HHHHHHHHHHHhc------------CCCcEEEEcccCCCceEE
Confidence 6677766655532 4557788888 5578876
No 19
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.33 E-value=2.1e-11 Score=97.15 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChH-------HHHHHH---HHHhCCCCceeEeecCCCCceeE
Q 032251 27 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEP-------LIQLNE---ILQRAPGVFGARFSGAGFRGCCL 96 (144)
Q Consensus 27 e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~pe-------ld~l~~---~a~~~~Ga~GakisGaG~GG~vi 96 (144)
...++..++.+|.++|++.||++|+++|+.|++.+..++|+ +.++.+ .++. .|++++.+||+| ||++
T Consensus 209 ~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~-~G~~~~~~SGaG--ptv~ 285 (317)
T 2gs8_A 209 SAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFACYFTMDAG--PNVK 285 (317)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS--SCEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHh-cCCcEEEEecCC--CeEE
Confidence 46778889999999999999999999999999877666555 445554 4455 799999999999 9999
Q ss_pred EEeccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCCeec
Q 032251 97 ALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 143 (144)
Q Consensus 97 al~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 143 (144)
+|++++..+++.+.+.+ ...+|++++++|++|
T Consensus 286 ~l~~~~~~~~v~~~l~~---------------~~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 286 VLCLEKDLAQLAERLGK---------------NYRIIVSKTKDLPDV 317 (317)
T ss_dssp EEEEGGGHHHHHHHHHT---------------TSEEEEEEBCCCCCC
T ss_pred EEEcHHHHHHHHHHHhc---------------CCeEEEEecCCCCCC
Confidence 99988777776666654 268999999999975
No 20
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.11 E-value=1.5e-10 Score=92.54 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHH
Q 032251 30 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAA 108 (144)
Q Consensus 30 r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~ 108 (144)
++..+..+|.++|++.|++.|....+..+. ..+|+++++++.+++ .|++|++|||+| +|+++|++.+. ++++.
T Consensus 202 ~~~~~~~al~~~d~~~l~~~l~n~le~~~~---~~~P~l~~i~~~~~~-~Ga~ga~mSGsG--ptvfal~~~~~~a~~~~ 275 (306)
T 3pyf_A 202 EPGPVLAALAAGDPDQLAPLLGNEMQAAAV---SLDPALARALRAGVE-AGALAGIVSGSG--PTCAFLCTSASSAIDVG 275 (306)
T ss_dssp CHHHHHHHHHHTCHHHHGGGCEETTHHHHH---HHCTHHHHHHHHHHH-TTCSEEEECTTS--SEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHhccchHHHHH---HhChHHHHHHHHHHh-cCCCEEEEcCcc--hhheEEeCCHHHHHHHH
Confidence 456788999999999999988422222221 238999999999998 899999999999 99999997643 55555
Q ss_pred HHHHHHhHhhchhHhhhcCCCceEEEee-cCCCeecC
Q 032251 109 SYVRSEYFELQPELASQLNADSAVLICK-PGDCARVI 144 (144)
Q Consensus 109 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~~~Ga~~~ 144 (144)
+.+.+ . |....+++++ +..|+++.
T Consensus 276 ~~l~~----~--------g~~~~v~~~~~~~~Ga~v~ 300 (306)
T 3pyf_A 276 AQLSG----A--------GVCRTVRVATGPVPGARVV 300 (306)
T ss_dssp HHHHH----T--------TSSSEEEEEEECCBCSEEC
T ss_pred HHHHh----c--------CCcceEEEeecCCCCCEEe
Confidence 55543 2 5667888877 78898873
No 21
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=98.82 E-value=6.2e-08 Score=79.42 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhh------ccCC-CChHHHHHHHHHHhC--C-C-CceeEeecCCCCcee
Q 032251 27 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY------NYEC-GSEPLIQLNEILQRA--P-G-VFGARFSGAGFRGCC 95 (144)
Q Consensus 27 e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~------~~~v-s~peld~l~~~a~~~--~-G-a~GakisGaG~GG~v 95 (144)
...++..++.+|.++|++.|+++|.++++.+++ ++.. -.|+..++++.+.+. . | ++++.+||+| +++
T Consensus 221 ~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv 298 (380)
T 2hke_A 221 VPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--ANC 298 (380)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--CcE
Confidence 466778899999999999999999876666663 2322 377778888776541 3 8 7889999888 999
Q ss_pred EEEeccccHHHHHHHHHHHhHh
Q 032251 96 LALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 96 ial~~~~~~~~~~~~l~~~y~~ 117 (144)
++|++++.++++.+.+++.|..
T Consensus 299 ~~l~~~~~~~~v~~~l~~~~~~ 320 (380)
T 2hke_A 299 FLFVLKEDLPEAVAMLMEHFPT 320 (380)
T ss_dssp EEEEEGGGHHHHHHHHHHHSCC
T ss_pred EEEECHHHHHHHHHHHHHhccc
Confidence 9999887788899999887754
No 22
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=98.73 E-value=1e-07 Score=79.17 Aligned_cols=87 Identities=11% Similarity=-0.018 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCC-------ChHHHHHHHHHHhC---CC-CceeEeecCCCCceeE
Q 032251 28 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-------SEPLIQLNEILQRA---PG-VFGARFSGAGFRGCCL 96 (144)
Q Consensus 28 ~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs-------~peld~l~~~a~~~---~G-a~GakisGaG~GG~vi 96 (144)
..++..++.+|.++|++.||++|.++|..+++.+..+ +|...++++.+.+. .| ++++-+||+| ++++
T Consensus 251 ~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~ 328 (416)
T 1fi4_A 251 PKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAV 328 (416)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEE
Confidence 5677889999999999999999998888887644433 44667777665431 27 6888999999 9999
Q ss_pred EEeccccHHHHHHHHHHHhH
Q 032251 97 ALVDADRAEEAASYVRSEYF 116 (144)
Q Consensus 97 al~~~~~~~~~~~~l~~~y~ 116 (144)
+|++++..+++.+.+++.|.
T Consensus 329 al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 329 LYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp EEEEGGGHHHHHHHHHHHHT
T ss_pred EEECHHHHHHHHHHHHHhcc
Confidence 99988888889999998886
No 23
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=98.65 E-value=3.8e-07 Score=75.90 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=73.2
Q ss_pred HHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCC-------CChHHHHHHHHHHhC----CCCceeEeec
Q 032251 22 EHYFT--ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-------GSEPLIQLNEILQRA----PGVFGARFSG 88 (144)
Q Consensus 22 ~~~v~--e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~v-------s~peld~l~~~a~~~----~Ga~GakisG 88 (144)
.+.+. ...++..++.+|.++|++.||+++..+...|+..|.- =+|+...+++.+.+. .|++++.++|
T Consensus 240 ~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsd 319 (414)
T 3f0n_A 240 KFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFD 319 (414)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 44555 3678889999999999999999877654455542221 267777777777663 2889999999
Q ss_pred CCCCceeEEEeccccHHHHHHHHHHHhHh
Q 032251 89 AGFRGCCLALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 89 aG~GG~vial~~~~~~~~~~~~l~~~y~~ 117 (144)
|| +++++|+++++.+++.+.|.+.|..
T Consensus 320 AG--Pnv~vl~~~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 320 AG--PNAVIFTLEDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp SS--SCEEEEEEHHHHHHHHHHHHHHSCC
T ss_pred CC--CCEEEEEecccHHHHHHHHHHhcCC
Confidence 99 9999999999999999999877665
No 24
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=98.63 E-value=3.1e-07 Score=74.23 Aligned_cols=89 Identities=10% Similarity=0.049 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhh------ccCCC-ChHHHHHHHHHHh---CCCCceeEeecCCCCceeE
Q 032251 27 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY------NYECG-SEPLIQLNEILQR---APGVFGARFSGAGFRGCCL 96 (144)
Q Consensus 27 e~~r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~------~~~vs-~peld~l~~~a~~---~~Ga~GakisGaG~GG~vi 96 (144)
...++..++.+|.++|++.|++++......|++ ++..- +|+..++++.+.+ ..|++|+.++||| ++++
T Consensus 212 ~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~ 289 (323)
T 3lto_A 212 AEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVH 289 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEE
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeE
Confidence 457788899999999999999998766555664 22222 6777666666654 2689999999999 9999
Q ss_pred EEeccccHHHHHHHHHHHhHh
Q 032251 97 ALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 97 al~~~~~~~~~~~~l~~~y~~ 117 (144)
+|+++++.+++.+.+.+.|..
T Consensus 290 ~l~~~~~~~~v~~~l~~~~~~ 310 (323)
T 3lto_A 290 LLYRSDQTDLARQFKSDHLVG 310 (323)
T ss_dssp EEECGGGHHHHHHHHHHHTTT
T ss_pred EEEecccHHHHHHHHHHHhHh
Confidence 999999999999999876543
No 25
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=98.33 E-value=1e-06 Score=68.62 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEeccc-cHHHHHHHHHHHhHhhchhHhhhcCCCceEEEeecCCC
Q 032251 64 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDC 140 (144)
Q Consensus 64 s~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~G 140 (144)
++|+++++++.+++ .|++|++|||+| ||+++|++.+ .++++.+.+. + . . .+|++++++|
T Consensus 209 ~~p~l~~l~~~~~~-~Ga~ga~~SGsG--~~v~~l~~~~~~~~~~~~~l~----~--------~--~-~~~~~~~~~g 268 (275)
T 1uek_A 209 LFPELKEVRGRMRA-LGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALR----A--------W--G-RAWAGTLGGG 268 (275)
T ss_dssp HCTHHHHHHHHHHH-TTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHT----T--------T--S-EEEEEEECCC
T ss_pred hChHHHHHHHHHHh-CCCCEEEEeccc--cCeEEEeCCHHHHHHHHHHhh----h--------c--c-EEEEEEecCC
Confidence 37999999999998 899999999999 8999999764 3444444333 2 1 2 6788887766
No 26
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=97.93 E-value=7.6e-07 Score=69.32 Aligned_cols=70 Identities=13% Similarity=-0.059 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeE-eecCCCCceeEEEecccc-HHHH
Q 032251 30 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGAR-FSGAGFRGCCLALVDADR-AEEA 107 (144)
Q Consensus 30 r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~Gak-isGaG~GG~vial~~~~~-~~~~ 107 (144)
++..+ .+|.++|++.|+++|. +.+...-...+|+++++++.+++ .|+ ++ |||+| ||+++|++++. ++++
T Consensus 188 ~~~~~-~al~~~d~~~~~~~~~---n~l~~~~~~~~p~l~~~~~~~~~-~Ga--a~~mSGsG--~~v~~l~~~~~~a~~~ 258 (271)
T 2v8p_A 188 TPEYA-EEKIQRIISGEVEEIE---NVLGDIARELYPEINEVYRFVEY-LGF--KPFVSGSG--STVYFFGGASEELKKA 258 (271)
T ss_dssp CHHHH-HHHHHHHHTTCGGGCC---BHHHHHHHHHCHHHHHHHHHHHH-TTC--CCEECTTS--SCEEESSCCCHHHHHH
T ss_pred chhHH-HHhhcCCHHHHHHHHh---CChhhHhHHhChHHHHHHHHHHh-CCC--ccCccccC--cCeEEEeCCHHHHHHH
Confidence 33344 8888999999998873 12322222348999999999998 798 89 99999 89999997653 4444
Q ss_pred H
Q 032251 108 A 108 (144)
Q Consensus 108 ~ 108 (144)
.
T Consensus 259 ~ 259 (271)
T 2v8p_A 259 A 259 (271)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=97.22 E-value=0.00017 Score=56.45 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHHHHH
Q 032251 65 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYV 111 (144)
Q Consensus 65 ~peld~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l 111 (144)
+|+++++++.+++ .| |++|||+| +|+++|++++. ++++.+.+
T Consensus 219 ~p~l~~i~~~~~~-~G--~a~~SGsG--~tvf~l~~~~~~a~~~~~~l 261 (283)
T 2ww4_A 219 FREVDAVLSWLLE-YA--PSRLTGTG--ACVFAEFDTESEARQVLEQA 261 (283)
T ss_dssp CHHHHHHHHHHHT-TS--CEEECTTS--SCEEEEESSHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHH-cC--CceECCcc--cceEEEeCCHHHHHHHHHHh
Confidence 8999999999998 78 89999998 99999997543 44444433
No 28
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=76.56 E-value=6.2 Score=26.78 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCceeEeecCCCCc-----eeEEEeccccHHHHHHHHHHHhHhh
Q 032251 67 PLIQLNEILQRAPGVFGARFSGAGFRG-----CCLALVDADRAEEAASYVRSEYFEL 118 (144)
Q Consensus 67 eld~l~~~a~~~~Ga~GakisGaG~GG-----~vial~~~~~~~~~~~~l~~~y~~~ 118 (144)
.+|.+.++..+ .|..|.+++-.|++| .+...++++.++++++.+.+..+.+
T Consensus 17 kld~V~~AL~~-~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 17 DANYLSDQFID-QNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp HHHHHHHHHHH-TTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHH-CCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 57888888887 899888877654333 3555567888999999999887665
No 29
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=71.58 E-value=15 Score=24.80 Aligned_cols=52 Identities=27% Similarity=0.271 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHhCCCCceeEee---cCCCC-c----------eeEEEeccccHHHHHHHHHHHhHh
Q 032251 65 SEPLIQLNEILQRAPGVFGARFS---GAGFR-G----------CCLALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 65 ~peld~l~~~a~~~~Ga~Gakis---GaG~G-G----------~vial~~~~~~~~~~~~l~~~y~~ 117 (144)
.+.+|.+.+++.+ .|+-|..++ |-|.. | -+..+++++.++++++++.+....
T Consensus 34 ~~k~e~V~~aL~~-~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t 99 (119)
T 2cz4_A 34 SLLEKRLVEEVKR-LGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP 99 (119)
T ss_dssp GGGHHHHHHHHHH-TTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh-CCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 4568899999998 788776544 33321 1 466777888899999999965443
No 30
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=68.85 E-value=13 Score=24.77 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhCCCCceeEe---ecCCC-Cce------------------eEEEeccccHHHHHHHHHHHhHh
Q 032251 66 EPLIQLNEILQRAPGVFGARF---SGAGF-RGC------------------CLALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gaki---sGaG~-GG~------------------vial~~~~~~~~~~~~l~~~y~~ 117 (144)
..++.+.+++.+ .|+-|..+ .|-|- +|. +..+++++.++++++++.+....
T Consensus 13 ~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 13 EKLEIVKKALSD-AGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp GGHHHHHHHHHH-TTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-CCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 457888888888 78877643 34442 121 67788888999999999987654
No 31
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=68.42 E-value=22 Score=23.28 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhCCCCceeEe---ecCCC--Cc-----------------eeEEEeccccHHHHHHHHHHHhHhhchhHh
Q 032251 66 EPLIQLNEILQRAPGVFGARF---SGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFELQPELA 123 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gaki---sGaG~--GG-----------------~vial~~~~~~~~~~~~l~~~y~~~~~~~~ 123 (144)
..++.+.++..+ .|+-|..+ .|-|- |. -+..+++++.++++++++.+....-+
T Consensus 11 ~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg~---- 85 (112)
T 2eg2_A 11 FKLDEVKDALVE-IGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQTGR---- 85 (112)
T ss_dssp GGHHHHHHHHHH-TTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCCSS----
T ss_pred HHHHHHHHHHHH-CCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcCCC----
Confidence 457888888888 78866643 34342 11 47777888899999999998765421
Q ss_pred hhcCCCceEEEeecCC
Q 032251 124 SQLNADSAVLICKPGD 139 (144)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (144)
.| +..+|++...+
T Consensus 86 --~G-dGkiFV~pVe~ 98 (112)
T 2eg2_A 86 --VG-DGKIFIIPVED 98 (112)
T ss_dssp --TT-CCEEEEEECSC
T ss_pred --CC-CEEEEEEEhHh
Confidence 12 35677655443
No 32
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=66.74 E-value=22 Score=23.43 Aligned_cols=51 Identities=16% Similarity=0.035 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhCCCCceeEe---ecCCCC--c-----------------eeEEEeccccHHHHHHHHHHHhHh
Q 032251 66 EPLIQLNEILQRAPGVFGARF---SGAGFR--G-----------------CCLALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gaki---sGaG~G--G-----------------~vial~~~~~~~~~~~~l~~~y~~ 117 (144)
..+|.+.+++.+ .|+-|..+ .|-|.- . -+..+++++.++.+++++.+....
T Consensus 11 ~~~~~V~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 83 (116)
T 1vfj_A 11 EKLNEVLKALFQ-AEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART 83 (116)
T ss_dssp GGHHHHHHHHHH-TTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh-CCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 457888888888 78866643 344421 1 588888999999999999987654
No 33
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=64.34 E-value=14 Score=24.84 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHhCCCCceeEe----ecCCCCc---------------eeEEEe-ccccHHHHHHHHHHHh
Q 032251 65 SEPLIQLNEILQRAPGVFGARF----SGAGFRG---------------CCLALV-DADRAEEAASYVRSEY 115 (144)
Q Consensus 65 ~peld~l~~~a~~~~Ga~Gaki----sGaG~GG---------------~vial~-~~~~~~~~~~~l~~~y 115 (144)
-|-.++|++.+++ .|+-|+.+ .|-|..| -+|-++ ++++.+.+.+.+.+.+
T Consensus 29 ~pL~~~Iv~~~~~-~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v 98 (114)
T 1o51_A 29 KPLFEYLVKRAYE-LGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNID 98 (114)
T ss_dssp EEHHHHHHHHHHH-TTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTCC
T ss_pred eEHHHHHHHHHHH-CCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh
Confidence 3678899999999 89988876 4445444 234444 5556777777776543
No 34
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=62.18 E-value=31 Score=22.76 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhCCCCcee---EeecCCCCc-------------------eeEEEeccccHHHHHHHHHHHhHhhchhHh
Q 032251 66 EPLIQLNEILQRAPGVFGA---RFSGAGFRG-------------------CCLALVDADRAEEAASYVRSEYFELQPELA 123 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Ga---kisGaG~GG-------------------~vial~~~~~~~~~~~~l~~~y~~~~~~~~ 123 (144)
..++.+.++..+ .|+-|. ...|-|--+ -+..+++++.++++++++.+....-+
T Consensus 15 ~~~~~v~~AL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~---- 89 (116)
T 2ns1_B 15 FKLEDVREALSS-IGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGK---- 89 (116)
T ss_dssp GGHHHHHHHHHH-TTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSS----
T ss_pred HHHHHHHHHHHH-CCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcCCC----
Confidence 457888888887 788665 344555321 45566788889999999998776521
Q ss_pred hhcCCCceEEEeecCC
Q 032251 124 SQLNADSAVLICKPGD 139 (144)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (144)
.| +..+|++...+
T Consensus 90 --~G-dGkiFV~pVe~ 102 (116)
T 2ns1_B 90 --IG-DGKIFVAELQR 102 (116)
T ss_dssp --TT-CCEEEEEEESC
T ss_pred --CC-CEEEEEEEhHH
Confidence 12 56677665443
No 35
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=61.08 E-value=37 Score=23.30 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhCCCCceeEe---ecCCCC-c-------------------eeEEEeccccHHHHHHHHHHHhHh
Q 032251 66 EPLIQLNEILQRAPGVFGARF---SGAGFR-G-------------------CCLALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gaki---sGaG~G-G-------------------~vial~~~~~~~~~~~~l~~~y~~ 117 (144)
..++.+.+++.+ .|+.|..+ .|-|.- | -+..+++++.++++++.+.+....
T Consensus 23 ~k~~~V~~AL~~-~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~t 96 (135)
T 2o66_A 23 WRIQQVSSALLK-IGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGART 96 (135)
T ss_dssp GGHHHHHHHHHH-TTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-CCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 357888888888 89877654 455532 2 367778888999999999988765
No 36
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=59.86 E-value=33 Score=22.40 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhCCCCceeEe---ecCCC-Cc------------------eeEEEeccccHHHHHHHHHHHhHhhchhHh
Q 032251 66 EPLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFELQPELA 123 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gaki---sGaG~-GG------------------~vial~~~~~~~~~~~~l~~~y~~~~~~~~ 123 (144)
..++.+.++..+ .|+-|..+ .|-|- .| -+..+++++.++++++++.+....-.|
T Consensus 13 ~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~--- 88 (114)
T 3bzq_A 13 FTLDDVKTSLED-AGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGKI--- 88 (114)
T ss_dssp GGHHHHHHHHHH-TTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHH-CCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcCCCC---
Confidence 457888888887 78866543 34442 12 377777888899999999987755311
Q ss_pred hhcCCCceEEEeecCC
Q 032251 124 SQLNADSAVLICKPGD 139 (144)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (144)
| +..+|++...+
T Consensus 89 ---G-dGkiFV~pVe~ 100 (114)
T 3bzq_A 89 ---G-DGKVWVSPVDT 100 (114)
T ss_dssp ---T-CCEEEEEEESC
T ss_pred ---C-CEEEEEEEhHH
Confidence 2 35667655433
No 37
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=55.88 E-value=40 Score=22.07 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhCCCCceeEe---ecCCC--Cc-----------------eeEEEeccccHHHHHHHHHHHhHhhchhHh
Q 032251 66 EPLIQLNEILQRAPGVFGARF---SGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFELQPELA 123 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gaki---sGaG~--GG-----------------~vial~~~~~~~~~~~~l~~~y~~~~~~~~ 123 (144)
..++.+.+++.+ .|+.|..+ .|-|- |. -+..+++++.++++++++.+....-+
T Consensus 13 ~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~tg~---- 87 (114)
T 2gw8_A 13 FKLDDVREALTE-IGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARSGK---- 87 (114)
T ss_dssp GGHHHHHHHHHH-TTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCCSS----
T ss_pred HHHHHHHHHHHH-CCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCCCC----
Confidence 457888888888 78876644 34342 11 45566678889999999998765421
Q ss_pred hhcCCCceEEEeecCC
Q 032251 124 SQLNADSAVLICKPGD 139 (144)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (144)
.| +..+|++...+
T Consensus 88 --~G-dGkiFV~pVe~ 100 (114)
T 2gw8_A 88 --IG-DGKIFVLPVEE 100 (114)
T ss_dssp --TT-CCEEEEEEESC
T ss_pred --CC-CEEEEEEEhHH
Confidence 12 35667655443
No 38
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=53.98 E-value=42 Score=21.79 Aligned_cols=51 Identities=25% Similarity=0.243 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhCCCCceeEe---ecCCC-Cc------------------eeEEEeccccHHHHHHHHHHHhHh
Q 032251 66 EPLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFE 117 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gaki---sGaG~-GG------------------~vial~~~~~~~~~~~~l~~~y~~ 117 (144)
..++.+.++..+ .|+-|..+ .|-|- +| -+..+++++.++++++++.+....
T Consensus 11 ~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 1hwu_A 11 FKLDEVRESLAE-VGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAART 83 (112)
T ss_dssp GGHHHHHHHHHH-TTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 457888888888 78877654 34442 12 455666888899999999987655
No 39
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=52.32 E-value=10 Score=24.37 Aligned_cols=56 Identities=14% Similarity=0.365 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCC-ceeEee
Q 032251 31 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV-FGARFS 87 (144)
Q Consensus 31 ~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga-~Gakis 87 (144)
...+..+|++.++.+++.++..+...|..--++.-..+++|.+...+ .|- +|-.+.
T Consensus 20 SvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~-~GL~~gm~l~ 76 (86)
T 3k4g_A 20 TVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLAS-RGLSLGMRLE 76 (86)
T ss_dssp CHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHT-TTCCSSCCEE
T ss_pred CHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHH-cCCCcCCCcc
Confidence 34677889999999999999988887776555555678899888887 674 444443
No 40
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=49.09 E-value=57 Score=21.79 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhCCCCceeEe---ecCCCC-c------------------eeEEEeccccHHHHHHHHHHHhHhhchhHh
Q 032251 66 EPLIQLNEILQRAPGVFGARF---SGAGFR-G------------------CCLALVDADRAEEAASYVRSEYFELQPELA 123 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gaki---sGaG~G-G------------------~vial~~~~~~~~~~~~l~~~y~~~~~~~~ 123 (144)
..+|.+.++..+ .|+.|..+ .|-|.- | -+..+++++.++++++.+.+.-+.-.
T Consensus 11 ~kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~TG~---- 85 (118)
T 3t9z_A 11 EKLECVKKALEE-RGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSARTGK---- 85 (118)
T ss_dssp GGHHHHHHHHHH-TTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHCCSS----
T ss_pred HHHHHHHHHHHH-CCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhcCCC----
Confidence 357888888888 89877644 455531 2 25667788889999999998754321
Q ss_pred hhcCCCceEEEeecCC
Q 032251 124 SQLNADSAVLICKPGD 139 (144)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (144)
.| +-.+|++...+
T Consensus 86 --~G-DGkIFV~~Ve~ 98 (118)
T 3t9z_A 86 --FG-DGRIFVIPVEK 98 (118)
T ss_dssp --TT-CCEEEEEECCE
T ss_pred --CC-CeEEEEEEhHH
Confidence 12 44666655443
No 41
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=46.61 E-value=60 Score=21.68 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhCCCCceeE---eecCCC--Cc-----------------eeEEEeccccHHHHHHHHHHHhHhhchhHh
Q 032251 66 EPLIQLNEILQRAPGVFGAR---FSGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFELQPELA 123 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gak---isGaG~--GG-----------------~vial~~~~~~~~~~~~l~~~y~~~~~~~~ 123 (144)
..+|.+.++..+ .|+.|.. ..|-|. |. -+...|+++.++++++.+.+.-+.-.
T Consensus 11 ~kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~TG~---- 85 (119)
T 3ncq_A 11 EKFPEVKAALEE-RGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFTGS---- 85 (119)
T ss_dssp TTHHHHHHHHHH-TTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSS----
T ss_pred HHHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCC----
Confidence 457888888887 8887754 445553 21 25667788899999999998654421
Q ss_pred hhcCCCceEEEeecCC
Q 032251 124 SQLNADSAVLICKPGD 139 (144)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (144)
.| +-.+|++...+
T Consensus 86 --~G-DGkIFV~~Ve~ 98 (119)
T 3ncq_A 86 --PG-DGKIFIIPVED 98 (119)
T ss_dssp --TT-CCEEEEEECSE
T ss_pred --CC-CCEEEEEEhHh
Confidence 12 45566655443
No 42
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=41.84 E-value=71 Score=20.84 Aligned_cols=72 Identities=13% Similarity=0.016 Sum_probs=41.9
Q ss_pred CCHHHHHHHhccCCHHHHHHHHH-HHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHhhh-ccCCCChHHHHHHHHHH
Q 032251 1 MAKEVYEAHKNELEPTLAKRAEH-YFTENRR-VAKGLEAWKSGNSQDFGKLISASGLSSIY-NYECGSEPLIQLNEILQ 76 (144)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~-~v~e~~r-~~~~~~aL~~~d~~~lg~lm~~s~~~lr~-~~~vs~peld~l~~~a~ 76 (144)
++.+.|...+..++++.+..+.. ++.+... +.....++..+|++.+.++ .| .++. .-.+.-..+-.+.....
T Consensus 12 lD~~~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~d~~~~~~~---aH-~LKGsa~~lG~~~l~~~~~~lE 86 (125)
T 2a0b_A 12 LDIPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEE---GH-KIKGAAGSVGLRHLQQLGQQIQ 86 (125)
T ss_dssp SCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH---HH-HHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCHHHHHHH---HH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 35567777778888887766654 4444443 4456678889999875543 44 3332 12233444545554444
No 43
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=35.74 E-value=80 Score=19.68 Aligned_cols=73 Identities=8% Similarity=-0.121 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCCceeEeecCCCCceeEEEeccc-cHHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEeecCCCe
Q 032251 69 IQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGDCA 141 (144)
Q Consensus 69 d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~~Ga 141 (144)
..+++.++..+|+++..+.=.--.+..+.+.... +.+.+...++..+...+ ..+..-+--.+.+.+..+-.|.
T Consensus 23 ~~~~~~~r~epG~l~~~~~~~~~~p~~~~~~E~w~d~~a~~~h~~s~~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 97 (106)
T 2gff_A 23 RANHLGSIREAGNLRFDVLRDEHIPTRFYIYEAYTDEAAVAIHKTTPHYLQCVEQLAPLMTGPRKKTVFIGLMPG 97 (106)
T ss_dssp HHHHHHHHTSTTEEEEEEEEESSCTTEEEEEEEESSHHHHHHHTTSHHHHHHHHHHGGGBSSCCEEEEEEEEECC
T ss_pred HHHHHHHhCCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHhcCCcEEEEEeecCCC
Confidence 3455555666999888766443334556666554 35555555443222222 2222223334666666655443
No 44
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=33.65 E-value=18 Score=22.39 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCC
Q 032251 32 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV 81 (144)
Q Consensus 32 ~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga 81 (144)
..+..+|++.++.+++.++..+...|..--++.-..+++|.+...+ .|.
T Consensus 18 ~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~-~gl 66 (73)
T 1z3e_B 18 VRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE-LGL 66 (73)
T ss_dssp HHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHH-hCC
Confidence 4567788889999999999988887776555555668888888876 553
No 45
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=32.53 E-value=34 Score=23.39 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=21.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHhhhccCCCC
Q 032251 12 ELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--GLSSIYNYECGS 65 (144)
Q Consensus 12 ~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s--~~~lr~~~~vs~ 65 (144)
.|++..+.|...++...-.-...+..|....++.|+++|.++ +..+...|+-..
T Consensus 68 ~l~~~~r~~k~~lL~~IL~nDaeIR~Ll~prl~eL~~li~~~~rq~~l~~aYg~~~ 123 (126)
T 3h3m_A 68 PLDEAARGMKFDLLVRILENDAAVRDLALPQLARLSDLLGRMKRQQSLLATYSGKA 123 (126)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHhccc
Confidence 455555555555554444444455555566667777777653 223334454433
No 46
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=32.04 E-value=63 Score=21.33 Aligned_cols=61 Identities=25% Similarity=0.412 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhCCCCceeE---eecCC----C-Cc-----------eeEEEe-ccccHHHHHHHHHHHhHhhchhHhhh
Q 032251 66 EPLIQLNEILQRAPGVFGAR---FSGAG----F-RG-----------CCLALV-DADRAEEAASYVRSEYFELQPELASQ 125 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gak---isGaG----~-GG-----------~vial~-~~~~~~~~~~~l~~~y~~~~~~~~~~ 125 (144)
..+|.+.++..+ .|+-|-. ..|-| . |+ -+..++ +++.++.+++++.+.+.+
T Consensus 16 ~kl~~V~~aL~~-~Gv~G~TV~~v~G~G~q~~~~~~~~~~~~~~~kvkieivv~~de~vd~vv~~I~~~~~t-------- 86 (111)
T 3dfe_A 16 VLLKKVAKIIEE-AGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLTENREMAEKIADQVAIKFFT-------- 86 (111)
T ss_dssp GGHHHHHHHHHH-HTCSCCEEEEEBC------------------CEEEEEEEESSHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHH-CCCCcEEEEecEeecCCCCCcCceEEEeccCCceEEEEEECCHHHHHHHHHHHHHHhhC--------
Confidence 457788887777 6776643 34444 1 12 125566 578899999999777665
Q ss_pred cCCCceEEEee
Q 032251 126 LNADSAVLICK 136 (144)
Q Consensus 126 ~~~~~~~~~~~ 136 (144)
+..-.+|++.
T Consensus 87 -~~~G~ifVsd 96 (111)
T 3dfe_A 87 -DYAGIIYICE 96 (111)
T ss_dssp -TSCEEEEEEE
T ss_pred -CCCEEEEEEE
Confidence 3345666654
No 47
>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11
Probab=30.44 E-value=95 Score=18.93 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCceeEeecCCCCceeEEEeccc-cHHHHHHHHH
Q 032251 70 QLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVR 112 (144)
Q Consensus 70 ~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~~~~~~l~ 112 (144)
.+++..+..+|+++..+.=. -.+..+.++... +.+.+..+++
T Consensus 28 ~~~~~~~~epG~l~~~~~~~-~~~~~~~~~e~w~~~~a~~~h~~ 70 (102)
T 1y0h_A 28 AMITPTRAEDGCRSYDLYES-ADGGELVLFERYRSRIALDEHRG 70 (102)
T ss_dssp HHHHHHHHSTTEEEEEEEEE-TTSSCEEEEEEESSHHHHHHHHT
T ss_pred HHHHHHhcCCCcEEEEEEEe-CCCCEEEEEEEECCHHHHHHHhc
Confidence 44555555699988877655 445566666554 3566665554
No 48
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=30.03 E-value=46 Score=17.37 Aligned_cols=11 Identities=27% Similarity=0.220 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 032251 104 AEEAASYVRSE 114 (144)
Q Consensus 104 ~~~~~~~l~~~ 114 (144)
++.+++.+.++
T Consensus 23 aeayakriaea 33 (37)
T 2i9o_A 23 AEAYAKRIAEA 33 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 49
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=30.02 E-value=60 Score=20.01 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=21.3
Q ss_pred HhhhccCCCChHHHHHHHHHHhCCCCceeEe--ecCC
Q 032251 56 SSIYNYECGSEPLIQLNEILQRAPGVFGARF--SGAG 90 (144)
Q Consensus 56 ~lr~~~~vs~peld~l~~~a~~~~Ga~Gaki--sGaG 90 (144)
.|.+.++||.+.+....+...+ .|- =-|. .|++
T Consensus 21 eLa~~l~VS~~TIRrdL~~Le~-~G~-l~R~~~~Gga 55 (78)
T 1xn7_A 21 QISQTLNTPQPMINAMLQQLES-MGK-AVRIQEEPDG 55 (78)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH-HTS-EEEECCCCCC
T ss_pred HHHHHHCcCHHHHHHHHHHHHH-CCC-EEEecCcCCC
Confidence 4455688888877777777766 563 3455 4544
No 50
>3okz_A Putative uncharacterized protein GBS0355; structural genomics, PSI-biology; 2.70A {Streptococcus agalactiae}
Probab=25.73 E-value=1.6e+02 Score=22.93 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=50.3
Q ss_pred HHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCC---CceeEEEeccccHHHHHHHHHH
Q 032251 37 AWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGF---RGCCLALVDADRAEEAASYVRS 113 (144)
Q Consensus 37 aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~---GG~vial~~~~~~~~~~~~l~~ 113 (144)
++..+.+..+.++++.-...+..++..+..++..|...+....++--..+.|-|. +|.-.-+++++...++...|.+
T Consensus 197 ~~s~~~l~~~~~ll~~~~~~v~Tdl~~~~~~~~~l~~~~~~~~~i~~~~l~G~~~~i~~g~sY~~~d~~~~~~i~~~l~~ 276 (306)
T 3okz_A 197 ILALNSISSYKKILSAVSNNMQTNIEISSKTIPNLLAYKDSLEHIKSYQLKGEDATLSDGGSYQILTKKHLLAVQNRIKK 276 (306)
T ss_dssp HHHHCCHHHHHHHHHHTGGGEEESSCCCTTCHHHHHTTTTGGGCEEEEEECCEEEECSSSBEEEECCHHHHHHHHHHHHH
T ss_pred HhCCcchhhHHHHHHHHHhheEeCCCcChHHHHHHHHHHHhcCCCceEEccCCceeecCCeEEEEcCHHHHHHHHHHHHH
Confidence 3344678888888887666666666665445666666554433444456666552 4445566777778888888876
Q ss_pred Hh
Q 032251 114 EY 115 (144)
Q Consensus 114 ~y 115 (144)
..
T Consensus 277 ~l 278 (306)
T 3okz_A 277 EL 278 (306)
T ss_dssp HT
T ss_pred Hc
Confidence 54
No 51
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=25.09 E-value=16 Score=23.02 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCC
Q 032251 32 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV 81 (144)
Q Consensus 32 ~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga 81 (144)
..+..+|++..+.+++.++..+...|..--++.-..+++|.+...+ .|.
T Consensus 25 ~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e-~Gl 73 (79)
T 3gfk_B 25 VRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE-LGL 73 (79)
T ss_dssp HHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHH-cCC
Confidence 4677888999999999999988777765444445567888888776 663
No 52
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=24.71 E-value=75 Score=20.81 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCc
Q 032251 30 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVF 82 (144)
Q Consensus 30 r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~ 82 (144)
++.+.+..|.++|++.+-..++ ..++..+ |-+.+. +.+...+..|.+
T Consensus 19 ~A~~~I~~l~~~dy~~i~~~~~---~~lk~~L--t~e~l~-~~~~~~~~~G~f 65 (114)
T 4hyz_A 19 QAMEDIEIAQSKDYESWKSRFT---KDLQSSL--TEESYD-SYLKILEKQGEF 65 (114)
T ss_dssp HHHHHHHHHHTTCHHHHHTTBC---HHHHTTC--CHHHHH-HHHHHHHTTCSE
T ss_pred HHHHHHHHHHhCCHHHHHHHhC---HHHHhhC--CHHHHH-HHHHHHHhcCCc
Confidence 4457888899999999998888 4677644 445677 767655557774
No 53
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=24.60 E-value=35 Score=22.68 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.2
Q ss_pred HHHHhC
Q 032251 35 LEAWKS 40 (144)
Q Consensus 35 ~~aL~~ 40 (144)
+.+|.+
T Consensus 78 ~~aL~~ 83 (118)
T 2of5_H 78 VQALEQ 83 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 54
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=23.49 E-value=2e+02 Score=21.96 Aligned_cols=26 Identities=4% Similarity=-0.091 Sum_probs=19.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhh
Q 032251 33 KGLEAWKSGNSQDFGKLISASGLSSIY 59 (144)
Q Consensus 33 ~~~~aL~~~d~~~lg~lm~~s~~~lr~ 59 (144)
++.++|.++|.+.|-+.|.+.. ..|+
T Consensus 286 ~l~~~l~~~d~~~l~~~~~~a~-~~r~ 311 (314)
T 3ggo_A 286 HLKELIVREAEEELVEYLKEVK-IKRM 311 (314)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-HHHH
Confidence 5566778899999999988776 3443
No 55
>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}
Probab=23.14 E-value=72 Score=21.01 Aligned_cols=70 Identities=10% Similarity=-0.073 Sum_probs=39.5
Q ss_pred HHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEeecCCC
Q 032251 71 LNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGDC 140 (144)
Q Consensus 71 l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~~G 140 (144)
+++.++.++|++...+.=.--.+..+.+..... .+.+...++..+...+ ..+.+-.--.|.++.+.|-.|
T Consensus 44 l~~~~r~EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH~~s~~f~~~~~~~~~ll~~~p~i~~~~~v~G 115 (122)
T 4dn9_A 44 LVEGASSMPGCLSYVVAQDPKDPDAIWITEVWDSPESHKASLSLPSVQDAIACGRPLIAALDEHHETVPVGG 115 (122)
T ss_dssp HHHHTTTCTTEEEEEEEEETTEEEEEEEEEEESCHHHHHHGGGSHHHHHHHHHHGGGEEEEEEEEEEEEEEE
T ss_pred HHHHHhCCCCCEEEEEEecCCCCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHHhcCCCeeEEEEeccc
Confidence 344555569998887765444467777776654 6666666553333332 223333334566776665444
No 56
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=22.93 E-value=1.1e+02 Score=20.53 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032251 12 ELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS 53 (144)
Q Consensus 12 ~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~lg~lm~~s 53 (144)
.+++....+...++...-.-...+..|....++.|+++|.++
T Consensus 55 ~l~~~~~~~~~~lL~~IL~nDaeIr~Ll~~rl~~L~~li~~~ 96 (122)
T 3a7m_A 55 GITRSIQDMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIGQS 96 (122)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666555555556666667777777777743
No 57
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=21.89 E-value=1.8e+02 Score=19.13 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhCCCCceeE---eecCCCC-c------------------eeEEEeccccHHHHHHHHHHHhHhhchhHh
Q 032251 66 EPLIQLNEILQRAPGVFGAR---FSGAGFR-G------------------CCLALVDADRAEEAASYVRSEYFELQPELA 123 (144)
Q Consensus 66 peld~l~~~a~~~~Ga~Gak---isGaG~G-G------------------~vial~~~~~~~~~~~~l~~~y~~~~~~~~ 123 (144)
..+|.+.++..+ .|+.|.. ..|-|.- | -+...++++.++.+++.+.+.-+.-+
T Consensus 11 ~kl~~vk~AL~~-~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I~~~a~Tg~---- 85 (116)
T 4aff_A 11 FKLDEVKIALVN-AGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGE---- 85 (116)
T ss_dssp GGHHHHHHHHHH-TTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSS----
T ss_pred HHHHHHHHHHHH-CCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCC----
Confidence 357888888887 7887754 4455532 3 25566788889999999988754421
Q ss_pred hhcCCCceEEEeecCCCe
Q 032251 124 SQLNADSAVLICKPGDCA 141 (144)
Q Consensus 124 ~~~~~~~~~~~~~~~~Ga 141 (144)
.| +-.+|++...+-.
T Consensus 86 --~G-DGkIFV~~Ve~~v 100 (116)
T 4aff_A 86 --NG-DGKIFVSPVDQTI 100 (116)
T ss_dssp --TT-CEEEEEEECSCCB
T ss_pred --CC-CeEEEEEEhHHeE
Confidence 12 4567766554433
No 58
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=21.60 E-value=1.1e+02 Score=16.70 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032251 20 RAEHYFTENRRVAKGLEAWK 39 (144)
Q Consensus 20 r~~~~v~e~~r~~~~~~aL~ 39 (144)
|=.++|.|+..+.++.+-|.
T Consensus 13 rkerIv~eCnavrqALQdLl 32 (40)
T 4e17_B 13 RRERIVAECNAVRQALQDLL 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44678999999988876553
No 59
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=21.51 E-value=2.2e+02 Score=20.19 Aligned_cols=50 Identities=6% Similarity=0.027 Sum_probs=31.1
Q ss_pred CHHHHHHHhccCCH--HHH-HHHHHHHHHHHH-HHHHHHHHh-CCCHHHHHHHHH
Q 032251 2 AKEVYEAHKNELEP--TLA-KRAEHYFTENRR-VAKGLEAWK-SGNSQDFGKLIS 51 (144)
Q Consensus 2 ~~~~~~~~~~~l~~--~~~-~r~~~~v~e~~r-~~~~~~aL~-~~d~~~lg~lm~ 51 (144)
+.+.|...+...++ +.. .-+..++.+..+ +..+..||. .+|++.+..+..
T Consensus 10 D~~~f~qL~el~dd~p~Fv~elV~~F~edse~~l~~L~~AL~~~~D~~~L~~~aH 64 (167)
T 2r25_A 10 NWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGH 64 (167)
T ss_dssp CHHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHhcccCchHHHHHHHHHHHhHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 34556666655553 343 444455555555 456778998 999988886654
No 60
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=21.41 E-value=88 Score=20.42 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=17.9
Q ss_pred eEEEeccccHHHHHHHHHHH
Q 032251 95 CLALVDADRAEEAASYVRSE 114 (144)
Q Consensus 95 vial~~~~~~~~~~~~l~~~ 114 (144)
+.++++++..+.+.++|.+.
T Consensus 4 I~aIIr~~kl~~vk~AL~~~ 23 (112)
T 3mhy_A 4 VMAIIKPFKLDEVREALTSL 23 (112)
T ss_dssp EEEEECGGGHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHC
Confidence 67899999999999999875
No 61
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=21.18 E-value=1.9e+02 Score=19.35 Aligned_cols=66 Identities=9% Similarity=-0.109 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCCCceeE---eecCCC--Cc--------------eeEEEeccccHHHHHHHHHHHhHhhchhHhhhcC
Q 032251 67 PLIQLNEILQRAPGVFGAR---FSGAGF--RG--------------CCLALVDADRAEEAASYVRSEYFELQPELASQLN 127 (144)
Q Consensus 67 eld~l~~~a~~~~Ga~Gak---isGaG~--GG--------------~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 127 (144)
.+|.+.+...+.+|+-|-. ..|-|. |- -+-.+++++.++++++++.+.+.. |
T Consensus 34 kld~V~daL~~~~gi~G~TvseV~G~Grqkg~~S~~E~yrG~epKvkiEivv~d~~ve~vv~aI~~~a~t---------g 104 (120)
T 3ce8_A 34 IKDDIVDTLIELEFLSGFSLGNICGFSREHSHFNIKEQVEGYREFCKFEIMHPAAQQAALLTALALVCKH---------N 104 (120)
T ss_dssp GHHHHHHHHTTCTTCCCCEEEEEEEEECC-----------EEEEEEEEEEEEEGGGHHHHHHHHHHHTTT---------S
T ss_pred HHHHHHHHHHhCCCCCcEEEEeeEEeCCCCCCCCceeEEecCCceEEEEEEECHHHHHHHHHHHHHHcCC---------C
Confidence 5788888888733775543 334442 22 245667888899999999998654 3
Q ss_pred CCceEEEeecCCCee
Q 032251 128 ADSAVLICKPGDCAR 142 (144)
Q Consensus 128 ~~~~~~~~~~~~Ga~ 142 (144)
+..+|++...+-.|
T Consensus 105 -~IKIfV~pVe~~vR 118 (120)
T 3ce8_A 105 -PCRYWIMPIYQNGT 118 (120)
T ss_dssp -CCEEEEEECSCCCC
T ss_pred -CEEEEEEEhHHeEE
Confidence 22777766554443
No 62
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=20.82 E-value=2.8e+02 Score=22.62 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=41.0
Q ss_pred CCCceeEEEeccccHHHHHHHHHHHhHhhc--------h--------------hHhhhcCCCceEEEeecCCCeec
Q 032251 90 GFRGCCLALVDADRAEEAASYVRSEYFELQ--------P--------------ELASQLNADSAVLICKPGDCARV 143 (144)
Q Consensus 90 G~GG~vial~~~~~~~~~~~~l~~~y~~~~--------~--------------~~~~~~~~~~~~~~~~~~~Ga~~ 143 (144)
.-+|+++-+.++++++++.+.|++.+.+.. | .+++.+|..+..++-.+++-+.|
T Consensus 230 ~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~~~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~Geavfi 305 (392)
T 2ypd_A 230 EIPGALWHIYAGKDVDKIREFLQKISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVL 305 (392)
T ss_dssp CCEEEEEEEECGGGHHHHHHHHHHHHHHHC------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEE
T ss_pred CCCCceeeeeCHhhHHHHHHHHHHHHHhhCCCccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEe
Confidence 356899999999999999999998776511 1 45677888887777777775543
No 63
>2o7a_A Lysozyme; protein folding, protein stability, circular permutant, hydrolase; HET: SME; 0.84A {Enterobacteria phage T4}
Probab=20.74 E-value=2e+02 Score=19.29 Aligned_cols=60 Identities=5% Similarity=-0.029 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCCh-HHHHHHHHHHh
Q 032251 12 ELEPTLAKRAEHYFTENRRV-----AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSE-PLIQLNEILQR 77 (144)
Q Consensus 12 ~l~~~~~~r~~~~v~e~~r~-----~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~p-eld~l~~~a~~ 77 (144)
.|++..+.-+..++.+.... ..+..+|..+||.....-|..|-. .++ +| ...++++..+.
T Consensus 32 ~l~~~r~~ALvsfaFNlG~g~l~~Fstllk~lnagD~~~Aa~el~~S~W-a~Q-----tp~Ra~r~~~~m~~ 97 (124)
T 2o7a_A 32 SLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRW-YNQ-----TPNRAKRVITTFRT 97 (124)
T ss_dssp HSCHHHHHHHHHHHHHHCHHHHHTCHHHHHHHHTTCHHHHHHHHTTSHH-HHH-----SHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCchhhcchhHHHHHHHCcCHHHHHHHHHhChh-hhh-----CcHHHHHHHHHHHC
Confidence 45666555566666665422 356788899999988887765421 223 44 34566666664
No 64
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=20.42 E-value=3.9e+02 Score=22.60 Aligned_cols=111 Identities=9% Similarity=0.010 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhCCCCceeEeecCCCC
Q 032251 14 EPTLAKRAEHYFTENR-RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFR 92 (144)
Q Consensus 14 ~~~~~~r~~~~v~e~~-r~~~~~~aL~~~d~~~lg~lm~~s~~~lr~~~~vs~peld~l~~~a~~~~Ga~GakisGaG~G 92 (144)
++.+..|..+.+.... +..+.+.-.+...+..+++...+.....++.++-=.+++-...+...+ .|. .-+++++.-
T Consensus 89 D~~l~~r~~~~l~~~i~~~~~e~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~dii~~fr~L~~-~G~--iEiit~~~t 165 (540)
T 3p0b_A 89 DARIKEGFWAYAKDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAEE-GGQ--VELITSNAT 165 (540)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-HTS--EEEEEECTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-CCC--EEEEcCCch
Confidence 3555666655444432 333334333444467777776665554444332224444444444444 576 566777766
Q ss_pred ceeEEEe-ccccHHHHHHHHHHHhHhhchhHhhhcCCCceEEE
Q 032251 93 GCCLALV-DADRAEEAASYVRSEYFELQPELASQLNADSAVLI 134 (144)
Q Consensus 93 G~vial~-~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 134 (144)
=.++-|. +++....-++.-.+.|++. ||.+|..+-
T Consensus 166 H~~lPLl~~~e~~~~QI~~g~~~~~~~-------FG~~P~G~W 201 (540)
T 3p0b_A 166 HGYSPLLGYDEALWAQIKTGVSTYRRH-------FAKDPTGFW 201 (540)
T ss_dssp CBCGGGCSCHHHHHHHHHHHHHHHHHH-------HSSCCCBEE
T ss_pred hhHHhcCCCHHHHHHHHHHHHHHHHHH-------hCCCCCEEE
Confidence 7777777 3444333333334456654 788887553
No 65
>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}
Probab=20.29 E-value=1.8e+02 Score=18.63 Aligned_cols=72 Identities=7% Similarity=-0.024 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCCceeEeecCCCCceeEEEecccc-HHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEeecCCCe
Q 032251 70 QLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGDCA 141 (144)
Q Consensus 70 ~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~~Ga 141 (144)
.+++..+..+|+++..+.=.--.+..+.+..... .+.+..+++..+...+ ..+..-+--.+.+-+..+.+|.
T Consensus 42 ~~~~~~r~EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH~~s~~~~~~~~~~~~ll~~~~~i~~~~~~~~~ 115 (119)
T 3e8o_A 42 HIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAMHTHLALPGVTQAIDALKHLNVTDLKITAYEAGEAI 115 (119)
T ss_dssp HHHHHHTTSTTEEEEEEEEETTSTTEEEEEEEESSHHHHHHHHTCHHHHHHHHHHHHTTCCCCEEEEEEBCSCE
T ss_pred HHHHHHhcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHHhcCCCEEEEEeccccc
Confidence 4555556679998887765433456666666654 6666666653333332 2222222335666666666654
No 66
>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A
Probab=20.18 E-value=1.8e+02 Score=18.50 Aligned_cols=74 Identities=9% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCCceeEeecC--------CCCceeEEEeccc-cHHHHHHHHHHHhHhhc-hhHhhhcCCCceEEEeecC
Q 032251 69 IQLNEILQRAPGVFGARFSGA--------GFRGCCLALVDAD-RAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPG 138 (144)
Q Consensus 69 d~l~~~a~~~~Ga~GakisGa--------G~GG~vial~~~~-~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~ 138 (144)
..+++..+.++|+++..+.=. --.+..+.+.... +.+.+...++..+...+ ..+..-.. .+.+.+..+-
T Consensus 25 ~~~~~~~r~EpGcl~y~~~~~~~~~~~~~~~~p~~~~~~E~W~d~~al~aH~~s~h~~~~~~~~~~l~~-~~~i~~~~~~ 103 (114)
T 1tuv_A 25 AKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVL-EMNIRILQPG 103 (114)
T ss_dssp HHHHHHHHHSTTEEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHHTSHHHHHHHHHHTTTEE-EEEEEEECCC
T ss_pred HHHHHHHccCCCcEEEEEEecccccccccCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHhcc-CCEEEEEEEc
Confidence 345555566699988877544 2335566666665 36666665553333222 22211111 2455556666
Q ss_pred CCeec
Q 032251 139 DCARV 143 (144)
Q Consensus 139 ~Ga~~ 143 (144)
.+.||
T Consensus 104 ~~~~~ 108 (114)
T 1tuv_A 104 ISGRV 108 (114)
T ss_dssp -----
T ss_pred ccccc
Confidence 66654
No 67
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=20.05 E-value=1.4e+02 Score=20.05 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=30.1
Q ss_pred cCCCC-hHHHHHHHHHHhCCCCceeEeecCCCC------ceeEEEecc
Q 032251 61 YECGS-EPLIQLNEILQRAPGVFGARFSGAGFR------GCCLALVDA 101 (144)
Q Consensus 61 ~~vs~-peld~l~~~a~~~~Ga~GakisGaG~G------G~vial~~~ 101 (144)
+++++ .++.+|.+.|++ .|.-..-+.-||+- -+++++.|.
T Consensus 53 lk~~~e~el~~L~~~a~~-~gl~~~~I~DAG~Tei~pgt~TvlaigP~ 99 (123)
T 1rzw_A 53 LKVKSLEELLGIKHKAES-LGLVTGLVQDAGLTEVPPGTITAVVIGPD 99 (123)
T ss_dssp EECSCHHHHHHHHHHHHH-TTCCEEEECCTTCCSCSTTSCEEEEEEEE
T ss_pred EecCCHHHHHHHHHHHHH-CCCCEEEEECCCCcccCCCCEEEEEeCcC
Confidence 56654 578899999998 78766778888877 568887654
Done!