RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 032251
(144 letters)
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 243 bits (621), Expect = 2e-80
Identities = 105/143 (73%), Positives = 120/143 (83%)
Query: 2 AKEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY 61
EVYEAHK +LE LA+RAEHYF+EN RV KG+EAW SGN ++FGKLISASGLSSI NY
Sbjct: 281 EPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIENY 340
Query: 62 ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPE 121
ECG EPLIQL EIL +APGV+GARFSGAGFRGCC+A VDA+ AEEAAS+VR EY + QPE
Sbjct: 341 ECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPE 400
Query: 122 LASQLNADSAVLICKPGDCARVI 144
LAS +N D VLIC+ GDCARV+
Sbjct: 401 LASNINGDKPVLICEAGDCARVL 423
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 100 bits (251), Expect = 6e-26
Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 4 EVYEAHKNELE--PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY 61
E + A + E+E P +A+RA H TEN+RV + +A +SG+ +FG+L++ S S +Y
Sbjct: 254 EEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDY 313
Query: 62 ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPE 121
E L L EI A G +GAR +GAGF GC +ALV D E A V EY ++
Sbjct: 314 EVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKVTGL 373
Query: 122 LASQLNADSAVLICKPGDCARVI 144
A A + + A V
Sbjct: 374 KA-------AFYVVEASQGAGVC 389
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 85.7 bits (213), Expect = 1e-20
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 4 EVYEAHKNELE-PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 62
E ++ + ++ TL KRA H TEN+R K ++A K+G+ + FG+L++AS +S +YE
Sbjct: 253 EEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYE 312
Query: 63 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 117
L L E + GV GAR +GAGF GC +A+V D+ E V Y E
Sbjct: 313 VTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEE 367
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 84.1 bits (208), Expect = 5e-20
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 6 YEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGS 65
Y A ++ P + +RA+H +EN RV K ++A K + + FG L++ S S +YEC
Sbjct: 255 YIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDYECTC 314
Query: 66 EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQ 125
+ +L G G+R +GAGF GC + LV + ++ V +Y + +
Sbjct: 315 PEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKK-----TG 369
Query: 126 LNADSAVLICKPG 138
L V++ KPG
Sbjct: 370 LELTFYVIVSKPG 382
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 80.4 bits (199), Expect = 9e-19
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 3 KEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 62
KEV E ++L P L KRA + EN RV K +A K G+ + G+L++ S NYE
Sbjct: 217 KEVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYE 276
Query: 63 CGSEPLIQLNEILQRAP--GVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 115
E +L+ ++ A G +GAR +GAGF G +ALVD + E + EY
Sbjct: 277 VSCE---ELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEY 328
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 68.4 bits (168), Expect = 2e-14
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 4 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC 63
E + A EL+P +AKRA H TEN R + A +G+ + G+L++ S S ++E
Sbjct: 248 EQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEI 307
Query: 64 GSEPLIQLNEILQRAPGVF-GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPEL 122
+ L EI++ G G R +G GF GC +ALV + E V +Y
Sbjct: 308 TVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEA----- 362
Query: 123 ASQLNADSAVLICKPGDCARVI 144
+ L V CK A
Sbjct: 363 KTGLKETFYV--CKASQGAGQC 382
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 66.8 bits (163), Expect = 6e-14
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 14 EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNE 73
+P A+RA H TEN+RV A + G+L++AS S ++E +E + + +
Sbjct: 240 DPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIAD 299
Query: 74 ILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 114
RA G GAR +G GF GC +ALV ADRAE+ A VR
Sbjct: 300 SAVRA-GALGARMTGGGFGGCVIALVPADRAEDVADTVRRA 339
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 54.3 bits (131), Expect = 2e-09
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 17 LAKRAEHYFTENRRVAKGLEAWKSGNS-----QDFGKLISASGLSSIYNYECGSEPLIQL 71
L +RA H ++E +RV + S S + G L++ S S YEC L +L
Sbjct: 361 LHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEEL 420
Query: 72 NEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 116
++ R G GAR +GAG+ GC +ALV + ++ +++
Sbjct: 421 VKVC-RDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFY 464
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 37.5 bits (87), Expect = 2e-04
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 35 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEP--LIQLNEILQRAPGVFGARFSGAGFR 92
LEA + G+ + G+L++ + LS G L +L E L+ G GA+ SG+G
Sbjct: 2 LEALREGDLELLGELLNENALSLEPLLYLGILSPELDELLEELREL-GALGAKLSGSGGG 60
Query: 93 GCCLALV-DADRAEEAASYVRSEY 115
AL D + AEE A +R Y
Sbjct: 61 PTVFALFKDEEDAEEVAEALREAY 84
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 34.3 bits (79), Expect = 0.011
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 77 RAPGVFGARFSGAGFRGCCLALVDADRAEEAA 108
R G GA+ +GAG GC +AL ++ E A
Sbjct: 245 RTAGALGAKITGAGGGGCMVALAAPEKQSEVA 276
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 32.1 bits (73), Expect = 0.077
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 65 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 115
+ L ++E++ GV G R G GF GC + L+ + + ++VR ++
Sbjct: 384 TPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKF 434
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 31.9 bits (73), Expect = 0.078
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 22 EHYFTENRRVAKGLE-AWKSGNSQDFGKLIS-ASGLSS---IYNYECGSEPLIQLNEILQ 76
+ + + E A ++G+ ++ G+L++ GL + E L +L E +
Sbjct: 203 DPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLKALGVSTPE-----LDELVEAAR 257
Query: 77 RAPGVFGARFSGAGFRGCCLALV-DADRAEE 106
G GA+ +GAG GC +AL + + AE
Sbjct: 258 SL-GALGAKLTGAGGGGCIIALAKNEEIAET 287
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 29.1 bits (65), Expect = 0.72
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 2 AKEVYEAHK-NELEPTLAKR-AEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS-GLSSI 58
K V + K E +PT R E+Y N V++ EA + GN G+L++A+ L
Sbjct: 199 TKVVGDVRKLKENQPTWFNRLLENY---NACVSEAKEALQKGNLFRVGELMNANHDLCQK 255
Query: 59 YNYECGSEPLIQLNEILQ--RAPGVFGARFSGAGFRGCCLALVDADRAEEAA 108
C +L+ I+Q R G GA+ SG G G +AL A + A
Sbjct: 256 LTVSCR-----ELDSIVQTCRTYGALGAKMSGTGRGGLVVALA-ASEDQRDA 301
>gnl|CDD|227132 COG4795, PulJ, Type II secretory pathway, component PulJ
[Intracellular trafficking and secretion].
Length = 194
Score = 28.9 bits (65), Expect = 0.81
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 49 LISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRG 93
L++ L S SE +Q LQRA + AGFR
Sbjct: 26 LLAFRFLDSAQRSNQASEARLQREAELQRAMALLERDLRRAGFRR 70
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 28.9 bits (65), Expect = 1.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 83 GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSA 131
++ SGAG+ G L D R + + + + Q A+ LN+D++
Sbjct: 44 ASQQSGAGYIGTGTTLADVRR-------IYNSFLDTQLRTATSLNSDAS 85
>gnl|CDD|236221 PRK08291, PRK08291, ectoine utilization protein EutC; Validated.
Length = 330
Score = 27.2 bits (61), Expect = 2.9
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 9 HKNELEPTLAKRAEHYF 25
HKNE+ P + A+ Y
Sbjct: 232 HKNEIAPAVFAAADLYV 248
>gnl|CDD|237823 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
Provisional.
Length = 191
Score = 27.0 bits (60), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 49 LISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 88
L+ A + Y Y+C ++ E L APGV+ AR++G
Sbjct: 50 LLKAEYVYKKYGYDCFADDTGLEVEALNGAPGVYSARYAG 89
>gnl|CDD|216430 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
dehydrogenase, a/b hammerhead domain.
Length = 111
Score = 26.4 bits (59), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 91 FRGCCLALVDAD---RAEEAASYVRSEYFELQ 119
F G +A V AD A +AA V+ EY EL
Sbjct: 80 FVGQPIAAVVADDEETARDAAELVKVEYEELP 111
>gnl|CDD|237765 PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 290
Score = 26.7 bits (60), Expect = 5.0
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 73 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 108
L+ PG AR SG+G C AL + A EAA
Sbjct: 238 AALRAQPGALLARMSGSG--ATCFALFADEAAAEAA 271
>gnl|CDD|235049 PRK02534, PRK02534, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 312
Score = 26.0 bits (58), Expect = 8.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 70 QLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYVR 112
+L E+L PG G SG+G C AL ++AE+A VR
Sbjct: 247 KLLELLSSLPGCLGTMMSGSG--PTCFALFESQEQAEQALEQVR 288
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.389
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,144,312
Number of extensions: 619476
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 37
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)