RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 032251
         (144 letters)



>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
           GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
          Length = 399

 Score =  139 bits (351), Expect = 9e-41
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 4   EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC 63
           E  EA ++ +     +RA H   E RR A+   A + G+ + FG+L+  S  S   +YE 
Sbjct: 268 EELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEV 327

Query: 64  GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELA 123
               L QL E     PGV+G+R +G GF GC + L++A  A  A  +++  Y        
Sbjct: 328 SCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY-------- 379

Query: 124 SQLNADSAVLICKPGDCARVI 144
                 +   + +  D A+V+
Sbjct: 380 ---GGTATFYLSQAADGAKVL 397


>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
           project protein structural and functional analyses;
           1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
           1s4e_A*
          Length = 350

 Score =  136 bits (345), Expect = 3e-40
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 3   KEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 62
           KEV E   ++L P   K   +   EN RV +  +A K GN ++ GK+++ +      NYE
Sbjct: 218 KEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYE 277

Query: 63  CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPEL 122
              + L    E      G +GAR +GAGF G  +ALVD + AE     +  EY +  P  
Sbjct: 278 VSCKELDFFVERA-LKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFPWK 336

Query: 123 ASQLNADSAVLICKPGDCARV 143
           A          I +P D   +
Sbjct: 337 AR-------HFIVEPSDGVGI 350


>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
           2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
          Length = 419

 Score =  137 bits (348), Expect = 4e-40
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 4   EVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 62
           E ++A+ + + + TL KRA H   EN R     +A+ +GN   FG+L++AS  S   +YE
Sbjct: 282 EEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYE 341

Query: 63  CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPEL 122
                L  L E  Q+  GV GAR +GAGF GC +ALV  D        V   Y E     
Sbjct: 342 VTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEE----- 396

Query: 123 ASQLNADSAVLICKPGDCARVI 144
              +   ++  + + G  +  +
Sbjct: 397 --VVGYPASFYVAQIGSGSTKL 416


>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
           NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
          Length = 478

 Score = 98.8 bits (246), Expect = 2e-25
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 7   EAHKNELEPTLAKRAEHYFTENRRV---AKGLEAWKSGNSQDFGKLISASGLSSIYNYEC 63
              ++ L   L +RA+H ++E  RV    K  E       Q  G+L++ S +S    YEC
Sbjct: 338 PNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMYEC 397

Query: 64  GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELA 123
               L QL +I  R  G  G+R +GAG+ GC +++V AD+     + V   Y++      
Sbjct: 398 SCPELDQLVDIC-RKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSL 456

Query: 124 SQLNADSAVLICKPGDCARVI 144
           +      ++   KPG  A V+
Sbjct: 457 APEKQ--SLFATKPGGGALVL 475


>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
           regulation, transcription; HET: GLA ATP; 2.10A
           {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
          Length = 520

 Score = 86.7 bits (214), Expect = 5e-21
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 7   EAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNS-------QDFGKLISASGLSSIY 59
                     L +RA+H ++E+ RV K L+   S           DFG+L++ S  S   
Sbjct: 372 TFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDK 431

Query: 60  NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA---DRAEEAASYVRSEYF 116
            YEC      Q+  I   A G FG+R +GAG+ GC + LV +      E+    +  +++
Sbjct: 432 LYECSCIETNQICSIA-LANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFY 490

Query: 117 ELQPELASQLNADSAVLICKPGDCARVI 144
            ++    +      A+++ KP     + 
Sbjct: 491 NVRYPDLTDEELKDAIIVSKPALGTCLY 518


>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
           beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
           jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
          Length = 317

 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 19  KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--GLSSIYNYECGSEPLIQLNEILQ 76
           +  +  F E  +V    EA K  N +DFGKL++ +   L         +  L ++ +I  
Sbjct: 216 ENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNHELLKK---LNISTPKLDRIVDIGN 270

Query: 77  RAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 117
                FGA+ +GAG  GC + LV+ ++ +E    +  E   
Sbjct: 271 --RFGFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 309


>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
           thetaiotaomicron, protein structure initiative II(PSI
           II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
          Length = 357

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 2/120 (1%)

Query: 2   AKEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS-GLSSIYN 60
           +  +    K           E      +       A   G+  +F +++           
Sbjct: 210 SAAIINEQKKNTSEGNQTAIEAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMA 269

Query: 61  YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQP 120
               +  + +  ++     G    + SGAG  G  + +V+  R EE    + +    + P
Sbjct: 270 GAITNPMIQEAFDVA-TGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNNLNGFVMP 328


>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
           2.50A {Streptococcus pneumoniae}
          Length = 292

 Score = 60.5 bits (147), Expect = 5e-12
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 30  RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 89
              +   A    +++  G+++S +    +      S     L E    + G  GA+ SG 
Sbjct: 199 LTQQAEIAISQKDAEGLGQILSQAH-LHLKEIGVSSLEADSLVETA-LSHGALGAKMSGG 256

Query: 90  GFRGCCLALV-DADRAEEAASYVRSEYFE 117
           G  GC +ALV +   A+E A  +  +   
Sbjct: 257 GLGGCIIALVTNLTHAQELAERLEEKGAV 285


>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
           transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
          Length = 332

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 13/143 (9%)

Query: 2   AKEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY 61
           AK V + HK + +    +    Y      V++  EA + G+ Q  G+L++A+        
Sbjct: 202 AKVVNDVHKMKQQ-QPVQFKRLYDNYTHIVSQAREALQKGDLQRLGQLMNANH-DLCRQI 259

Query: 62  ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQP 120
           +     L  + +   R  G  GA+ SG G  G  +AL  + D+ +     ++++  E   
Sbjct: 260 DVSCRELESIVQTC-RTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPE--- 315

Query: 121 ELASQLNADSAVLICKPGDCARV 143
                          +P   + +
Sbjct: 316 ------AKFIWRYTVQPSAASNL 332


>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
           aureus}
          Length = 308

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 6/117 (5%)

Query: 2   AKEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY 61
            + V++ HK   +P      +H     + V +  +  +    +    + +    + +   
Sbjct: 188 RQAVHDVHKLCEDPQYMSHVKH---IGKLVLRASDVIEHHKFEALADIFNECH-ADLKAL 243

Query: 62  ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYVRSEYFE 117
               + + QL +I  +  G    + +GAG  G  L L  D   A+     V      
Sbjct: 244 TVSHDKIEQLMKIG-KENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAGAA 299


>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
           {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
           2r42_A* 2r3v_A
          Length = 395

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 15/113 (13%), Positives = 31/113 (27%), Gaps = 3/113 (2%)

Query: 3   KEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 62
           +         + P L           R + +   A          +L+  +    +    
Sbjct: 251 RSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQ-HHLNALG 309

Query: 63  CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 115
            G   L QL ++         ++ +GAG  GC + L+            +   
Sbjct: 310 VGHASLDQLCQVTAAH--GLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 360


>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
           structural genomics, NEW YORK SGX research center for
           structural genomics; HET: PGE; 2.10A {Listeria innocua}
          Length = 365

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 19  KRAEHYFTE-NRRVAKGLEAWKSGNSQDFGKLISA-----SGLSSIYNYECGSEPLIQLN 72
           K  +H+ T  N  + + ++A+ + + +     I         L +       +  L +L 
Sbjct: 242 KNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELA 301

Query: 73  EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEA 107
           +  +   G    + SG+G   C +A        E 
Sbjct: 302 DSAENMGG--AGKSSGSGGGDCGIAFSKTKELAEK 334


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 45/151 (29%)

Query: 3   KEVYEAHKNELEP-------TLAKRAEHYFTENRRVAKGL--EAWKSGNS----QDFGKL 49
           +++Y+ +   +         TL++         +   +GL    W    S    +D+  L
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--L 231

Query: 50  ISA------SGLSSIYNYE--CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 101
           +S        G+  + +Y             ++L   PG   +   GA   G    LV A
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTA---------KLLGFTPGELRSYLKGA--TGHSQGLVTA 280

Query: 102 DRAEEAASYVRSEYFELQPELASQLNADSAV 132
                A +     +F          +   A+
Sbjct: 281 --VAIAETDSWESFFV---------SVRKAI 300



 Score = 33.1 bits (75), Expect = 0.023
 Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 69/202 (34%)

Query: 1    MAKEVYEAHKNELEPTLAK----RAEHYFTEN---------RRVAKGLEAWKSGNS---- 43
            M  ++Y+  K       A+    RA+++F +                L     G      
Sbjct: 1631 MGMDLYKTSK------AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684

Query: 44   -QDFGKLISASGL----------------SSIYNYECGSEPLIQLNEILQRAPGVF---- 82
             +++  +I  + +                S+ Y +    + L+   +  Q  P +     
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEKGLLSATQFTQ--PALTLMEK 1741

Query: 83   ---------GARFSGAGFRG---------CCLALVDADRAEEAASYV--RSEYFELQPEL 122
                     G   + A F G           LA  D    E     V  R    ++    
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLA--DVMSIESLVEVVFYRGMTMQVAVPR 1799

Query: 123  ASQLNADSAVLICKPGDCARVI 144
                 ++  ++   PG  A   
Sbjct: 1800 DELGRSNYGMIAINPGRVAASF 1821


>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
           HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
           1k47_A* 3gon_A*
          Length = 337

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 31  VAKGLEAWKSGNSQDFGKLIS-ASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 89
           V   +EA + G S+   + +  AS L    + +  +  L QL E  Q    V  A+ SGA
Sbjct: 238 VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV--AKSSGA 295

Query: 90  GFRGCCLALVDADRAEEA 107
           G   C +AL    ++ + 
Sbjct: 296 GGGDCGIALSFDAQSTKT 313


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.36
 Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 5/33 (15%)

Query: 44 QDFGKLISASGLSSIYNYECGSEPLIQLNEILQ 76
          Q   KL      +S+  Y   S P + +   ++
Sbjct: 20 QALKKL-----QASLKLYADDSAPALAIKATME 47


>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299,
          PSI-2, structure initiative; HET: MSE GOL; 2.23A
          {Sinorhizobium meliloti}
          Length = 304

 Score = 26.2 bits (58), Expect = 5.0
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 1  MAKEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAW 38
          + +E YE    +L+  L K         +RV    E  
Sbjct: 57 LDREEYEETLTKLQIELVKVQFWMQATGKRVMAVFEGR 94


>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
           TOH structural genomics, PSI-2, protein structure
           initiative; 1.70A {Bordetella pertussis}
          Length = 313

 Score = 25.7 bits (57), Expect = 5.7
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 6   YEAHKNELEPTLAKRAEHYFTENR 29
              H  EL+    +RA     E R
Sbjct: 215 SLPHTRELDDEALRRARAVVVEWR 238


>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
           initiative, MI center for structural genomics, MCSG;
           HET: MES; 2.25A {Pseudomonas aeruginosa}
          Length = 266

 Score = 25.7 bits (57), Expect = 5.7
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 84  ARFSGAGFRGCCLALVDADRAEEAAS 109
              +  G  G   A+ D D   + A 
Sbjct: 181 MATNRHGLAGSFAAVRDTDLRAQLAR 206


>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase,
           glycosidase, disease mutat glycoprotein, hydrolase,
           lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN
           GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
          Length = 613

 Score = 25.9 bits (57), Expect = 6.8
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 82  FGARFSGAGFRGCCLALVDADRA-EEAASYVRSEYFELQPE 121
           F    S     G    +    R  + AA  +R  Y+++  E
Sbjct: 572 FMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKIANE 612


>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein,
           ashka family, ATPase; 2.20A {Carboxydothermus
           hydrogenoformans}
          Length = 631

 Score = 25.6 bits (55), Expect = 7.3
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 79  PGVFGARFSGAG---FRGCCLALVDADRAEEAASYVRS-EYFEL 118
           P +   +FS  G    +G   AL+      E     R   Y EL
Sbjct: 560 PDIDINKFSYVGNSSLKGARKALLSRKACAEVKEIARKMTYLEL 603


>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
           HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
           3l0p_A*
          Length = 223

 Score = 25.3 bits (56), Expect = 8.0
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 14  EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSI 58
           E  + KR + Y+            +K+  +++    I   G  SI
Sbjct: 167 EGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSI 211


>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog;
           structural genomics, joint center for structural
           genomics, JCSG; 1.78A {Thermotoga maritima} SCOP:
           c.51.4.1
          Length = 208

 Score = 25.2 bits (56), Expect = 9.1
 Identities = 7/16 (43%), Positives = 7/16 (43%)

Query: 73  EILQRAPGVFGARFSG 88
             L   PGV  ARF  
Sbjct: 86  YSLGGFPGVMSARFME 101


>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase,
          cobalamin, colicin, TRAN protein; HET: MPG; 1.95A
          {Escherichia coli} SCOP: f.4.3.3 PDB: 1nqg_A* 1nqh_A*
          1ujw_A* 1nqe_A* 2ysu_A 3m8b_A* 3m8d_A* 3rgm_A* 3rgn_A*
          2gsk_A* 1nqf_A*
          Length = 594

 Score = 25.5 bits (56), Expect = 9.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 71 LNEILQRAPGVFGARFSGAG 90
          +N++L+R PGV   +  G+G
Sbjct: 42 VNDVLRRLPGVDITQNGGSG 61


>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
           genomics, NYSGXRC, PSI, protein structure initiative;
           2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
          Length = 319

 Score = 25.0 bits (55), Expect = 9.7
 Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 3/39 (7%)

Query: 99  VDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP 137
               +A       R  Y +    LA+  +   AV +   
Sbjct: 39  PTRAKALPICESWRIPYADSLSSLAASCD---AVFVHSS 74


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,143,912
Number of extensions: 115678
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 39
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)