RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032251
(144 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 101 bits (252), Expect = 2e-28
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 4 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC 63
E + TL KRA H EN R +A+ +GN FG+L++AS S +YE
Sbjct: 50 EFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEV 109
Query: 64 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELA 123
L L E Q+ GV GAR +GAGF GC +ALV D V Y E
Sbjct: 110 TGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEE------ 163
Query: 124 SQLNADSAVLICKPGDCARVI 144
+ ++ + + G + +
Sbjct: 164 -VVGYPASFYVAQIGSGSTKL 183
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 94.0 bits (233), Expect = 7e-26
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Query: 6 YEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGS 65
EA ++ + +RA H E RR A+ A + G+ + FG+L+ S S +YE
Sbjct: 47 LEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSC 106
Query: 66 EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQ 125
L QL E PGV+G+R +G GF GC + L++A A A +++ Y
Sbjct: 107 PELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY---------- 156
Query: 126 LNADSAVLICKPGDCARVI 144
+ + + D A+V+
Sbjct: 157 -GGTATFYLSQAADGAKVL 174
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 88.2 bits (218), Expect = 1e-23
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 1 MAKEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN 60
+KEV E +L P K + EN RV + +A K G+ + GK+++ + N
Sbjct: 38 SSKEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDALKEGDIEKVGKILTTAHWDLAEN 97
Query: 61 YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQP 120
Y E L + G +GAR +GAGF G +ALVD D+A+ + EY
Sbjct: 98 YRVSCEELDFFVKKA-MELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYLA--- 153
Query: 121 ELASQLNADSAVLICKPGDCA 141
+ + + + KP D
Sbjct: 154 ----KFSWKAKYFVVKPSDGV 170
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 58.4 bits (141), Expect = 2e-12
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 19 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRA 78
+ + F E +V EA K N +DFGKL++ + + + L ++ +I R
Sbjct: 36 ENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNH-ELLKKLNISTPKLDRIVDIGNRF 92
Query: 79 PGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 117
FGA+ +GAG GC + LV+ ++ +E + E
Sbjct: 93 --GFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 129
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 46.9 bits (111), Expect = 5e-08
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 5/114 (4%)
Query: 3 KEVYEAHKNELEPTLAKRAEHYFTENRRVAKGL-EAWKSGNSQDFGKLISASGLSSIYNY 61
+ + P L + E RV + A +L+ + +
Sbjct: 26 RSRLIKFPEIMAPLL-TSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQ-HHLNAL 83
Query: 62 ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 115
G L QL ++ ++ +GAG GC + L+ +
Sbjct: 84 GVGHASLDQLCQVTAAH--GLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 135
>d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia
coli [TaxId: 562]}
Length = 661
Score = 28.4 bits (61), Expect = 0.36
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 71 LNEILQRAPGVFGARFSGAGFRG 93
+ E+L R PGV +G G
Sbjct: 40 MREVLNRIPGVSAPENNGTGSHD 62
>d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA
{Escherichia coli [TaxId: 562]}
Length = 714
Score = 28.1 bits (60), Expect = 0.48
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 71 LNEILQRAPGVFGARFSGAGFRG 93
+++I++ PGV S +G RG
Sbjct: 35 VSKIIRTMPGVNLTGNSTSGQRG 57
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 27.6 bits (60), Expect = 0.52
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 82 FGARFSGAGFRGCCLALVDADRAEEAASY-VRSEYFELQPE 121
F S G + R ++A++ +R Y+++ E
Sbjct: 264 FMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKIANE 304
>d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter
BtuB {Escherichia coli [TaxId: 562]}
Length = 591
Score = 27.2 bits (58), Expect = 0.94
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 71 LNEILQRAPGVFGARFSGAG------FRG 93
+N++L+R PGV + G+G RG
Sbjct: 39 VNDVLRRLPGVDITQNGGSGQLSSIFIRG 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.389
Gapped
Lambda K H
0.267 0.0352 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,171
Number of extensions: 19858
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 11
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.7 bits)