Query 032253
Match_columns 144
No_of_seqs 129 out of 1193
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 11:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 99.9 3.6E-27 7.9E-32 157.4 9.7 92 41-143 2-93 (99)
2 PRK10824 glutaredoxin-4; Provi 99.9 1.1E-26 2.3E-31 158.5 10.7 96 34-143 2-102 (115)
3 KOG1752 Glutaredoxin and relat 99.9 2.4E-26 5.2E-31 154.0 10.7 97 36-143 3-99 (104)
4 PHA03050 glutaredoxin; Provisi 99.9 2.6E-26 5.7E-31 155.4 10.7 96 37-143 3-101 (108)
5 TIGR00365 monothiol glutaredox 99.9 2.2E-25 4.7E-30 148.3 10.5 91 37-141 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.9 1.9E-23 4.1E-28 137.1 9.2 84 41-138 2-90 (90)
7 PTZ00062 glutaredoxin; Provisi 99.9 1.8E-22 3.9E-27 150.3 11.7 97 33-143 99-200 (204)
8 PRK10638 glutaredoxin 3; Provi 99.9 4.9E-22 1.1E-26 128.3 10.1 82 47-142 2-83 (83)
9 TIGR02180 GRX_euk Glutaredoxin 99.9 4.6E-22 9.9E-27 127.6 9.4 82 49-141 1-84 (84)
10 TIGR02181 GRX_bact Glutaredoxi 99.9 4.1E-22 8.8E-27 127.2 9.1 79 49-141 1-79 (79)
11 COG0278 Glutaredoxin-related p 99.9 1.7E-21 3.6E-26 127.7 9.0 97 34-143 2-103 (105)
12 cd03419 GRX_GRXh_1_2_like Glut 99.9 2.6E-21 5.7E-26 123.8 9.3 82 48-140 1-82 (82)
13 cd03031 GRX_GRX_like Glutaredo 99.8 1E-20 2.2E-25 134.3 9.9 82 48-143 1-92 (147)
14 COG0695 GrxC Glutaredoxin and 99.8 2.8E-20 6.1E-25 119.6 9.7 78 48-138 2-80 (80)
15 cd03418 GRX_GRXb_1_3_like Glut 99.8 6E-20 1.3E-24 115.7 9.9 74 48-135 1-75 (75)
16 cd03027 GRX_DEP Glutaredoxin ( 99.8 2.1E-19 4.5E-24 113.2 8.2 67 47-116 1-67 (73)
17 TIGR02190 GlrX-dom Glutaredoxi 99.8 4.6E-19 9.9E-24 113.4 8.7 69 44-116 5-73 (79)
18 cd03029 GRX_hybridPRX5 Glutare 99.8 7.8E-19 1.7E-23 110.2 8.3 65 48-116 2-66 (72)
19 PRK11200 grxA glutaredoxin 1; 99.8 1.3E-18 2.9E-23 112.6 8.8 74 47-134 1-81 (85)
20 TIGR02183 GRXA Glutaredoxin, G 99.8 1.2E-18 2.5E-23 113.4 8.5 75 49-135 2-81 (86)
21 cd02066 GRX_family Glutaredoxi 99.7 2.7E-17 5.8E-22 101.5 9.0 66 48-116 1-66 (72)
22 PRK12759 bifunctional gluaredo 99.7 2.8E-17 6.2E-22 133.9 10.0 82 47-143 2-90 (410)
23 PF00462 Glutaredoxin: Glutare 99.7 1.3E-16 2.8E-21 96.7 7.9 60 49-111 1-60 (60)
24 KOG0911 Glutaredoxin-related p 99.7 1.7E-16 3.7E-21 118.0 9.6 92 38-143 130-226 (227)
25 cd03030 GRX_SH3BGR Glutaredoxi 99.7 8.3E-16 1.8E-20 101.1 9.4 80 49-142 2-91 (92)
26 PRK10329 glutaredoxin-like pro 99.7 1E-15 2.2E-20 98.5 9.0 65 48-116 2-66 (81)
27 TIGR02194 GlrX_NrdH Glutaredox 99.6 7.1E-16 1.5E-20 96.8 7.6 64 49-116 1-65 (72)
28 TIGR02196 GlrX_YruB Glutaredox 99.6 3.5E-14 7.7E-19 87.9 8.6 66 48-116 1-66 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.5 5.4E-13 1.2E-17 82.4 9.0 66 48-116 1-66 (73)
30 cd02973 TRX_GRX_like Thioredox 99.4 1.1E-12 2.4E-17 80.7 6.9 60 48-112 2-64 (67)
31 TIGR02200 GlrX_actino Glutared 99.4 5E-12 1.1E-16 79.3 8.8 66 48-116 1-68 (77)
32 KOG2824 Glutaredoxin-related p 99.4 1.9E-12 4.2E-17 98.9 7.6 84 46-143 130-223 (281)
33 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 4E-11 8.7E-16 78.4 7.2 73 35-112 2-77 (89)
34 TIGR00411 redox_disulf_1 small 99.2 2.3E-10 4.9E-15 72.5 8.4 64 48-116 2-70 (82)
35 PF04908 SH3BGR: SH3-binding, 99.1 7.5E-10 1.6E-14 73.6 8.5 81 48-142 2-97 (99)
36 TIGR01295 PedC_BrcD bacterioci 99.0 1.7E-09 3.6E-14 74.6 8.6 67 49-116 27-108 (122)
37 PHA02125 thioredoxin-like prot 99.0 2.7E-09 5.9E-14 67.3 8.1 55 49-111 2-56 (75)
38 cd02975 PfPDO_like_N Pyrococcu 99.0 3.1E-09 6.7E-14 72.2 7.9 60 42-106 18-81 (113)
39 cd02954 DIM1 Dim1 family; Dim1 98.9 7E-09 1.5E-13 70.7 8.2 60 48-112 17-82 (114)
40 PF05768 DUF836: Glutaredoxin- 98.9 7.6E-09 1.6E-13 66.3 7.4 55 48-108 1-57 (81)
41 PRK15317 alkyl hydroperoxide r 98.9 1.4E-08 3.1E-13 85.1 9.0 86 19-111 92-180 (517)
42 TIGR00412 redox_disulf_2 small 98.8 1.8E-08 4E-13 63.7 7.4 57 49-114 3-64 (76)
43 TIGR02187 GlrX_arch Glutaredox 98.8 2.3E-08 5E-13 75.0 9.0 82 30-116 118-204 (215)
44 TIGR03140 AhpF alkyl hydropero 98.8 9E-09 1.9E-13 86.3 7.1 87 19-112 93-182 (515)
45 PHA02278 thioredoxin-like prot 98.8 7.3E-08 1.6E-12 64.6 9.8 63 49-112 18-86 (103)
46 TIGR03143 AhpF_homolog putativ 98.8 2.5E-08 5.5E-13 84.3 9.1 90 19-115 452-546 (555)
47 cd02985 TRX_CDSP32 TRX family, 98.8 7.7E-08 1.7E-12 64.1 8.6 64 47-112 17-85 (103)
48 cd03041 GST_N_2GST_N GST_N fam 98.8 8.1E-08 1.8E-12 60.6 8.2 65 49-116 2-68 (77)
49 cd02949 TRX_NTR TRX domain, no 98.7 1.4E-07 2.9E-12 62.0 8.6 59 49-112 17-81 (97)
50 cd00570 GST_N_family Glutathio 98.7 9.9E-08 2.2E-12 57.4 6.7 64 50-116 2-65 (71)
51 KOG0910 Thioredoxin-like prote 98.7 6.5E-08 1.4E-12 68.5 6.4 72 35-111 49-128 (150)
52 cd03040 GST_N_mPGES2 GST_N fam 98.7 2E-07 4.3E-12 58.5 8.0 63 48-116 1-67 (77)
53 cd02962 TMX2 TMX2 family; comp 98.7 1.8E-07 3.8E-12 66.9 8.4 59 49-112 51-122 (152)
54 PF00085 Thioredoxin: Thioredo 98.6 7.7E-07 1.7E-11 58.0 10.5 60 48-112 20-85 (103)
55 cd03037 GST_N_GRX2 GST_N famil 98.6 2.2E-07 4.8E-12 57.5 7.4 62 50-116 2-64 (71)
56 cd02956 ybbN ybbN protein fami 98.6 3.5E-07 7.7E-12 59.5 8.7 60 48-112 15-80 (96)
57 cd02953 DsbDgamma DsbD gamma f 98.6 2.2E-07 4.7E-12 61.6 7.8 65 41-106 5-78 (104)
58 cd02994 PDI_a_TMX PDIa family, 98.6 2.2E-07 4.9E-12 61.1 7.5 62 43-109 14-82 (101)
59 cd03036 ArsC_like Arsenate Red 98.6 5.6E-08 1.2E-12 65.9 4.6 49 49-100 1-49 (111)
60 cd02989 Phd_like_TxnDC9 Phosdu 98.6 3.4E-07 7.4E-12 62.1 8.3 59 49-112 26-89 (113)
61 cd02948 TRX_NDPK TRX domain, T 98.6 7.1E-07 1.5E-11 59.2 9.5 57 49-111 21-84 (102)
62 cd02951 SoxW SoxW family; SoxW 98.6 4.8E-07 1E-11 61.9 8.9 70 37-106 3-90 (125)
63 PTZ00051 thioredoxin; Provisio 98.6 3.7E-07 8.1E-12 59.6 8.0 70 39-113 10-86 (98)
64 cd02965 HyaE HyaE family; HyaE 98.6 3.2E-07 7E-12 62.2 7.5 65 46-115 28-100 (111)
65 COG2143 Thioredoxin-related pr 98.6 4.2E-07 9E-12 64.8 7.9 103 9-111 3-129 (182)
66 cd02984 TRX_PICOT TRX domain, 98.5 5.7E-07 1.2E-11 58.5 7.6 58 49-111 18-81 (97)
67 cd02963 TRX_DnaJ TRX domain, D 98.5 1.2E-06 2.5E-11 59.1 9.2 60 48-112 27-93 (111)
68 PF13192 Thioredoxin_3: Thiore 98.5 5.6E-08 1.2E-12 61.4 2.4 57 48-111 2-60 (76)
69 PRK10996 thioredoxin 2; Provis 98.5 2.6E-06 5.6E-11 59.8 11.1 58 49-111 56-119 (139)
70 PRK09381 trxA thioredoxin; Pro 98.5 1.9E-06 4.1E-11 57.4 9.5 62 48-114 24-91 (109)
71 cd02950 TxlA TRX-like protein 98.5 2.5E-06 5.5E-11 60.1 10.5 60 49-111 24-90 (142)
72 PTZ00443 Thioredoxin domain-co 98.5 2.1E-06 4.5E-11 65.1 10.6 59 48-111 55-119 (224)
73 PF13098 Thioredoxin_2: Thiore 98.5 6.7E-07 1.5E-11 59.7 7.0 71 46-116 6-104 (112)
74 cd02977 ArsC_family Arsenate R 98.5 1.9E-07 4.2E-12 62.4 4.1 47 49-98 1-47 (105)
75 cd02986 DLP Dim1 family, Dim1- 98.5 1.5E-06 3.2E-11 59.2 8.0 58 49-111 18-81 (114)
76 cd03060 GST_N_Omega_like GST_N 98.4 1.5E-06 3.2E-11 53.8 7.4 60 50-113 2-62 (71)
77 cd02947 TRX_family TRX family; 98.4 2.6E-06 5.6E-11 53.7 8.7 60 48-112 13-77 (93)
78 cd02955 SSP411 TRX domain, SSP 98.4 2.9E-06 6.2E-11 58.7 9.2 72 39-111 7-94 (124)
79 cd02957 Phd_like Phosducin (Ph 98.4 9E-07 1.9E-11 59.8 6.5 62 49-116 28-94 (113)
80 cd03055 GST_N_Omega GST_N fami 98.4 2.2E-06 4.8E-11 55.6 7.7 67 46-116 16-83 (89)
81 PRK01655 spxA transcriptional 98.4 9.6E-07 2.1E-11 61.6 6.2 36 49-86 2-37 (131)
82 cd03003 PDI_a_ERdj5_N PDIa fam 98.4 9.1E-07 2E-11 58.2 5.8 58 49-111 22-85 (101)
83 TIGR01126 pdi_dom protein disu 98.4 1.3E-06 2.8E-11 56.9 6.5 55 47-106 15-75 (102)
84 KOG0907 Thioredoxin [Posttrans 98.4 1.7E-06 3.8E-11 58.2 7.2 59 49-112 25-88 (106)
85 cd03006 PDI_a_EFP1_N PDIa fami 98.4 1.8E-06 3.9E-11 58.7 7.2 57 49-109 33-95 (113)
86 TIGR01068 thioredoxin thioredo 98.4 8.1E-06 1.8E-10 52.8 10.1 61 47-112 16-82 (101)
87 cd03059 GST_N_SspA GST_N famil 98.4 2.4E-06 5.3E-11 52.7 7.2 63 50-116 2-64 (73)
88 cd03051 GST_N_GTT2_like GST_N 98.4 1.3E-06 2.9E-11 53.8 5.9 62 50-112 2-64 (74)
89 cd02996 PDI_a_ERp44 PDIa famil 98.4 2.8E-06 6.1E-11 56.6 7.5 56 49-109 22-89 (108)
90 cd02999 PDI_a_ERp44_like PDIa 98.4 1.7E-06 3.8E-11 57.3 6.4 54 48-106 21-78 (100)
91 cd02959 ERp19 Endoplasmic reti 98.3 1.7E-06 3.7E-11 59.1 6.5 74 35-112 7-91 (117)
92 cd03045 GST_N_Delta_Epsilon GS 98.3 2.7E-06 5.9E-11 52.7 6.7 63 50-113 2-64 (74)
93 cd03004 PDI_a_ERdj5_C PDIa fam 98.3 5.1E-06 1.1E-10 54.8 8.4 56 48-108 22-83 (104)
94 PRK15412 thiol:disulfide inter 98.3 3.3E-05 7.1E-10 56.6 13.3 61 49-109 72-154 (185)
95 COG3118 Thioredoxin domain-con 98.3 1.4E-06 3E-11 68.0 6.3 62 49-115 47-114 (304)
96 COG4545 Glutaredoxin-related p 98.3 4E-06 8.7E-11 52.6 6.6 64 48-113 3-78 (85)
97 PLN00410 U5 snRNP protein, DIM 98.3 7.1E-06 1.5E-10 58.0 8.6 56 49-109 27-89 (142)
98 cd03035 ArsC_Yffb Arsenate Red 98.3 6.3E-06 1.4E-10 55.4 7.8 34 49-84 1-34 (105)
99 TIGR02187 GlrX_arch Glutaredox 98.3 4.5E-06 9.8E-11 62.6 7.8 66 43-111 17-90 (215)
100 TIGR01617 arsC_related transcr 98.3 2.8E-06 6.1E-11 57.9 6.0 37 49-87 1-37 (117)
101 cd03000 PDI_a_TMX3 PDIa family 98.3 2.3E-06 5E-11 56.7 5.3 53 49-106 19-78 (104)
102 cd03032 ArsC_Spx Arsenate Redu 98.2 2.5E-06 5.5E-11 58.0 5.5 45 49-96 2-46 (115)
103 PF13417 GST_N_3: Glutathione 98.2 4.8E-06 1E-10 52.1 6.1 62 51-116 1-62 (75)
104 PTZ00102 disulphide isomerase; 98.2 1.8E-05 4E-10 65.2 11.3 59 48-111 52-119 (477)
105 cd02952 TRP14_like Human TRX-r 98.2 6.4E-06 1.4E-10 56.6 7.0 59 48-106 24-96 (119)
106 cd03002 PDI_a_MPD1_like PDI fa 98.2 3.9E-06 8.5E-11 55.6 5.8 56 48-106 21-80 (109)
107 PF14595 Thioredoxin_9: Thiore 98.2 6.2E-07 1.4E-11 62.4 1.9 79 33-116 29-116 (129)
108 PRK12559 transcriptional regul 98.2 2.7E-06 5.9E-11 59.3 4.9 34 49-84 2-35 (131)
109 cd02987 Phd_like_Phd Phosducin 98.2 4.7E-06 1E-10 60.8 6.3 60 49-114 87-151 (175)
110 cd02997 PDI_a_PDIR PDIa family 98.2 1.1E-05 2.3E-10 52.9 7.5 61 48-111 20-88 (104)
111 cd02961 PDI_a_family Protein D 98.2 9.5E-06 2.1E-10 52.1 7.1 55 47-106 17-77 (101)
112 cd03005 PDI_a_ERp46 PDIa famil 98.2 1.3E-05 2.8E-10 52.4 7.6 59 48-111 19-86 (102)
113 PRK10877 protein disulfide iso 98.2 2.4E-05 5.1E-10 59.6 9.8 71 46-116 108-219 (232)
114 PRK00293 dipZ thiol:disulfide 98.2 2.7E-05 5.9E-10 66.4 11.0 73 36-110 463-547 (571)
115 PRK03147 thiol-disulfide oxido 98.1 5.8E-05 1.3E-09 54.0 11.2 65 47-111 63-152 (173)
116 PRK13344 spxA transcriptional 98.1 5.6E-06 1.2E-10 57.9 5.3 34 49-84 2-35 (132)
117 cd01659 TRX_superfamily Thiore 98.1 1.3E-05 2.8E-10 46.2 6.0 58 49-108 1-61 (69)
118 cd03056 GST_N_4 GST_N family, 98.1 1.7E-05 3.7E-10 48.7 6.8 65 50-115 2-66 (73)
119 PTZ00062 glutaredoxin; Provisi 98.1 8.2E-06 1.8E-10 61.0 6.1 56 48-116 20-80 (204)
120 cd03001 PDI_a_P5 PDIa family, 98.1 8.5E-06 1.8E-10 53.3 5.5 53 49-106 22-78 (103)
121 TIGR02738 TrbB type-F conjugat 98.0 2.7E-05 5.8E-10 55.7 7.0 63 44-106 49-124 (153)
122 COG3634 AhpF Alkyl hydroperoxi 98.0 2.1E-05 4.6E-10 63.2 6.8 86 24-112 95-181 (520)
123 cd02993 PDI_a_APS_reductase PD 98.0 3.6E-05 7.8E-10 51.5 6.9 57 47-106 23-84 (109)
124 cd03052 GST_N_GDAP1 GST_N fami 98.0 3.6E-05 7.8E-10 48.0 6.3 67 49-116 1-67 (73)
125 cd02998 PDI_a_ERp38 PDIa famil 98.0 5E-05 1.1E-09 49.5 7.3 54 48-106 21-81 (105)
126 PF13899 Thioredoxin_7: Thiore 97.9 3.6E-05 7.7E-10 49.0 6.1 67 34-106 4-79 (82)
127 cd03020 DsbA_DsbC_DsbG DsbA fa 97.9 6E-05 1.3E-09 55.6 8.1 71 46-116 78-189 (197)
128 cd03033 ArsC_15kD Arsenate Red 97.9 2E-05 4.3E-10 53.6 4.9 34 48-83 1-34 (113)
129 cd03009 TryX_like_TryX_NRX Try 97.9 9.4E-05 2E-09 50.7 8.1 64 48-111 21-113 (131)
130 cd02988 Phd_like_VIAF Phosduci 97.9 4.1E-05 9E-10 56.7 6.6 58 49-114 106-168 (192)
131 cd03065 PDI_b_Calsequestrin_N 97.9 0.00016 3.5E-09 49.7 8.5 57 49-112 31-101 (120)
132 cd02992 PDI_a_QSOX PDIa family 97.8 7.4E-05 1.6E-09 50.6 6.6 56 48-106 22-84 (114)
133 PRK13728 conjugal transfer pro 97.8 6.6E-05 1.4E-09 55.1 6.5 60 48-110 72-149 (181)
134 cd03053 GST_N_Phi GST_N family 97.8 0.00021 4.6E-09 44.3 7.2 67 49-116 2-68 (76)
135 TIGR00385 dsbE periplasmic pro 97.7 0.00017 3.7E-09 52.1 7.4 63 49-111 67-151 (173)
136 TIGR02740 TraF-like TraF-like 97.7 9.6E-05 2.1E-09 57.5 6.4 66 41-106 162-235 (271)
137 cd02964 TryX_like_family Trypa 97.7 0.00027 5.8E-09 48.7 8.1 64 49-112 21-114 (132)
138 cd03008 TryX_like_RdCVF Trypar 97.7 0.00031 6.6E-09 49.9 8.2 64 48-111 28-126 (146)
139 cd03061 GST_N_CLIC GST_N famil 97.7 0.00019 4.1E-09 47.0 6.6 58 55-116 20-77 (91)
140 cd03054 GST_N_Metaxin GST_N fa 97.7 0.00016 3.6E-09 44.5 6.0 51 55-116 14-64 (72)
141 cd02995 PDI_a_PDI_a'_C PDIa fa 97.7 0.00021 4.4E-09 46.6 6.7 53 48-106 21-79 (104)
142 cd03058 GST_N_Tau GST_N family 97.7 0.00034 7.3E-09 43.3 7.3 63 50-116 2-65 (74)
143 cd03010 TlpA_like_DsbE TlpA-li 97.7 0.00039 8.5E-09 47.3 8.1 65 47-111 27-114 (127)
144 PF13905 Thioredoxin_8: Thiore 97.6 0.00088 1.9E-08 43.2 8.4 59 48-106 4-88 (95)
145 KOG3029 Glutathione S-transfer 97.6 0.00017 3.7E-09 56.1 5.7 58 47-110 89-146 (370)
146 PF13728 TraF: F plasmid trans 97.6 0.00024 5.2E-09 53.5 6.4 69 36-106 111-189 (215)
147 TIGR01130 ER_PDI_fam protein d 97.6 0.00082 1.8E-08 54.9 10.1 57 49-110 22-87 (462)
148 TIGR00014 arsC arsenate reduct 97.5 0.00012 2.7E-09 49.7 4.2 34 49-84 1-34 (114)
149 PRK10026 arsenate reductase; P 97.5 0.00018 3.9E-09 50.8 4.9 36 47-84 2-37 (141)
150 PLN02309 5'-adenylylsulfate re 97.5 0.00073 1.6E-08 56.2 9.2 56 48-106 368-428 (457)
151 TIGR00424 APS_reduc 5'-adenyly 97.5 0.00052 1.1E-08 57.2 8.2 55 49-106 375-434 (463)
152 PRK10853 putative reductase; P 97.5 7.7E-05 1.7E-09 51.1 2.5 34 49-84 2-35 (118)
153 KOG0908 Thioredoxin-like prote 97.5 0.00022 4.8E-09 54.6 5.2 65 47-116 23-95 (288)
154 cd03034 ArsC_ArsC Arsenate Red 97.5 0.00024 5.2E-09 48.1 4.8 34 49-84 1-34 (112)
155 cd03042 GST_N_Zeta GST_N famil 97.5 0.00058 1.2E-08 41.8 6.1 64 50-114 2-65 (73)
156 cd03049 GST_N_3 GST_N family, 97.5 0.00059 1.3E-08 42.0 6.1 62 50-115 2-66 (73)
157 KOG4023 Uncharacterized conser 97.5 0.00027 5.9E-09 46.6 4.6 82 48-142 3-97 (108)
158 COG1393 ArsC Arsenate reductas 97.4 0.00022 4.8E-09 48.8 4.1 28 48-75 2-29 (117)
159 PF13409 GST_N_2: Glutathione 97.4 0.00025 5.3E-09 43.8 3.7 61 56-116 1-62 (70)
160 TIGR01616 nitro_assoc nitrogen 97.4 0.00039 8.5E-09 48.2 5.0 32 48-81 2-33 (126)
161 cd03076 GST_N_Pi GST_N family, 97.4 0.0016 3.5E-08 40.3 7.4 64 49-116 2-65 (73)
162 PRK11657 dsbG disulfide isomer 97.4 0.00079 1.7E-08 51.8 7.0 23 47-69 119-141 (251)
163 PRK14018 trifunctional thiored 97.3 0.0023 5E-08 54.1 10.0 22 49-70 60-81 (521)
164 cd02958 UAS UAS family; UAS is 97.3 0.00037 8E-09 46.9 4.3 75 34-111 4-91 (114)
165 cd03050 GST_N_Theta GST_N fami 97.3 0.0016 3.5E-08 40.4 6.9 62 50-112 2-63 (76)
166 cd02966 TlpA_like_family TlpA- 97.3 0.0014 3.1E-08 42.5 7.0 62 45-106 19-103 (116)
167 cd02982 PDI_b'_family Protein 97.3 0.00077 1.7E-08 44.0 5.7 55 47-106 14-74 (103)
168 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0019 4.2E-08 44.7 8.0 25 46-70 6-30 (154)
169 TIGR02182 GRXB Glutaredoxin, G 97.3 0.00097 2.1E-08 49.6 6.6 61 51-116 2-63 (209)
170 cd03038 GST_N_etherase_LigE GS 97.3 0.00077 1.7E-08 42.8 5.0 61 54-116 13-74 (84)
171 cd03048 GST_N_Ure2p_like GST_N 97.2 0.0019 4.1E-08 40.6 6.7 64 49-114 2-68 (81)
172 COG3019 Predicted metal-bindin 97.2 0.0081 1.8E-07 42.2 9.8 63 47-116 26-92 (149)
173 cd03011 TlpA_like_ScsD_MtbDsbE 97.2 0.0022 4.8E-08 43.1 6.8 61 46-106 21-99 (123)
174 TIGR02661 MauD methylamine deh 97.2 0.0062 1.3E-07 44.7 9.6 62 49-111 78-160 (189)
175 cd03080 GST_N_Metaxin_like GST 97.1 0.0025 5.5E-08 39.6 6.5 57 49-116 2-65 (75)
176 PRK09481 sspA stringent starva 97.1 0.0026 5.6E-08 47.2 7.6 60 48-111 10-69 (211)
177 PF13462 Thioredoxin_4: Thiore 97.1 0.0088 1.9E-07 41.9 9.9 21 96-116 132-152 (162)
178 KOG4277 Uncharacterized conser 97.1 0.0013 2.8E-08 52.0 5.8 58 49-111 47-112 (468)
179 cd03007 PDI_a_ERp29_N PDIa fam 97.1 0.0047 1E-07 42.2 7.7 61 49-109 22-91 (116)
180 smart00594 UAS UAS domain. 97.1 0.0041 8.9E-08 42.5 7.4 70 34-106 14-92 (122)
181 cd03012 TlpA_like_DipZ_like Tl 97.1 0.0057 1.2E-07 41.6 8.1 24 47-70 25-48 (126)
182 cd03039 GST_N_Sigma_like GST_N 97.0 0.0032 6.9E-08 38.6 6.2 64 50-116 2-65 (72)
183 cd02972 DsbA_family DsbA famil 97.0 0.0027 5.9E-08 40.1 6.0 22 49-70 1-22 (98)
184 PTZ00102 disulphide isomerase; 97.0 0.0009 2E-08 55.2 4.5 53 49-106 379-437 (477)
185 cd03044 GST_N_EF1Bgamma GST_N 97.0 0.0023 5E-08 39.7 5.3 60 50-111 2-62 (75)
186 cd02960 AGR Anterior Gradient 97.0 0.0016 3.5E-08 45.4 4.9 37 31-67 7-45 (130)
187 cd02967 mauD Methylamine utili 96.9 0.0019 4.2E-08 42.8 4.8 24 47-70 23-46 (114)
188 PF06764 DUF1223: Protein of u 96.9 0.003 6.4E-08 47.2 6.1 68 49-116 2-87 (202)
189 PF06110 DUF953: Eukaryotic pr 96.9 0.0035 7.6E-08 43.0 5.7 49 55-106 36-95 (119)
190 PF03960 ArsC: ArsC family; I 96.9 0.0031 6.7E-08 42.3 5.4 31 52-84 1-31 (110)
191 TIGR02739 TraF type-F conjugat 96.9 0.002 4.4E-08 49.8 4.9 70 35-106 140-219 (256)
192 PRK10387 glutaredoxin 2; Provi 96.9 0.0047 1E-07 45.4 6.7 61 50-115 2-63 (210)
193 COG5429 Uncharacterized secret 96.8 0.0046 1E-07 47.0 6.5 68 49-116 45-130 (261)
194 cd03047 GST_N_2 GST_N family, 96.8 0.0084 1.8E-07 36.8 6.7 62 50-112 2-63 (73)
195 PRK13703 conjugal pilus assemb 96.8 0.00095 2.1E-08 51.4 2.8 69 36-106 134-212 (248)
196 COG4232 Thiol:disulfide interc 96.8 0.01 2.2E-07 50.5 8.9 67 39-106 464-540 (569)
197 KOG3425 Uncharacterized conser 96.8 0.0029 6.4E-08 43.3 4.7 72 34-108 13-103 (128)
198 PRK15113 glutathione S-transfe 96.7 0.0085 1.8E-07 44.5 7.3 64 47-111 4-69 (214)
199 PF08534 Redoxin: Redoxin; In 96.6 0.014 3E-07 40.5 7.4 63 48-111 31-128 (146)
200 PLN02919 haloacid dehalogenase 96.6 0.019 4.2E-07 52.5 10.1 64 49-112 424-517 (1057)
201 KOG2501 Thioredoxin, nucleored 96.6 0.011 2.5E-07 42.3 6.8 62 50-111 38-129 (157)
202 KOG0190 Protein disulfide isom 96.5 0.0083 1.8E-07 50.3 6.6 69 37-110 32-111 (493)
203 PTZ00056 glutathione peroxidas 96.5 0.04 8.8E-07 40.9 9.7 23 48-70 42-64 (199)
204 cd03057 GST_N_Beta GST_N famil 96.4 0.016 3.4E-07 35.8 6.1 62 50-113 2-64 (77)
205 TIGR00862 O-ClC intracellular 96.4 0.015 3.3E-07 44.4 7.0 58 55-116 17-74 (236)
206 cd03043 GST_N_1 GST_N family, 96.3 0.018 3.9E-07 35.6 5.7 60 54-115 7-66 (73)
207 PRK10954 periplasmic protein d 96.3 0.018 4E-07 42.8 6.7 22 45-66 37-58 (207)
208 COG5494 Predicted thioredoxin/ 96.2 0.05 1.1E-06 40.9 8.3 66 46-116 10-76 (265)
209 PF07315 DUF1462: Protein of u 96.1 0.073 1.6E-06 34.6 7.8 67 50-116 1-84 (93)
210 PLN02378 glutathione S-transfe 96.1 0.024 5.1E-07 42.2 6.5 53 55-111 18-70 (213)
211 KOG0406 Glutathione S-transfer 96.1 0.036 7.8E-07 42.2 7.4 63 47-113 8-71 (231)
212 PLN02473 glutathione S-transfe 96.1 0.029 6.2E-07 41.4 6.8 65 49-114 3-67 (214)
213 TIGR01130 ER_PDI_fam protein d 96.0 0.013 2.8E-07 47.9 5.2 51 49-106 368-425 (462)
214 cd03046 GST_N_GTT1_like GST_N 96.0 0.034 7.3E-07 34.0 5.9 65 50-116 2-66 (76)
215 PF03190 Thioredox_DsbH: Prote 96.0 0.049 1.1E-06 39.4 7.3 83 29-111 19-116 (163)
216 PLN02817 glutathione dehydroge 95.9 0.032 7E-07 43.3 6.6 53 55-111 71-123 (265)
217 KOG1731 FAD-dependent sulfhydr 95.9 0.015 3.2E-07 49.4 4.9 81 47-130 59-155 (606)
218 cd02969 PRX_like1 Peroxiredoxi 95.9 0.081 1.7E-06 37.8 8.2 71 46-116 26-130 (171)
219 TIGR01626 ytfJ_HI0045 conserve 95.8 0.06 1.3E-06 39.7 7.5 27 45-71 59-85 (184)
220 TIGR01262 maiA maleylacetoacet 95.8 0.016 3.4E-07 42.5 4.5 62 51-112 2-63 (210)
221 KOG0190 Protein disulfide isom 95.7 0.0089 1.9E-07 50.1 2.9 51 49-106 388-444 (493)
222 KOG0191 Thioredoxin/protein di 95.6 0.018 3.9E-07 46.7 4.3 57 45-106 47-107 (383)
223 KOG1422 Intracellular Cl- chan 95.4 0.064 1.4E-06 40.2 6.3 56 56-116 20-76 (221)
224 COG0526 TrxA Thiol-disulfide i 95.3 0.033 7.1E-07 35.3 4.1 53 52-109 39-100 (127)
225 COG2999 GrxB Glutaredoxin 2 [P 95.1 0.053 1.2E-06 39.8 4.8 54 51-112 3-60 (215)
226 COG1651 DsbG Protein-disulfide 95.0 0.11 2.3E-06 39.3 6.8 25 92-116 207-231 (244)
227 PHA03075 glutaredoxin-like pro 95.0 0.049 1.1E-06 37.1 4.2 35 47-81 3-37 (123)
228 cd03077 GST_N_Alpha GST_N fami 94.6 0.15 3.3E-06 31.8 5.6 60 49-112 2-63 (79)
229 COG0625 Gst Glutathione S-tran 94.6 0.085 1.8E-06 38.9 5.1 57 50-108 2-58 (211)
230 KOG3414 Component of the U4/U6 94.5 0.16 3.4E-06 35.3 5.7 58 49-111 27-90 (142)
231 PTZ00256 glutathione peroxidas 94.3 0.17 3.6E-06 36.9 6.1 21 50-70 46-66 (183)
232 TIGR02540 gpx7 putative glutat 94.2 0.21 4.5E-06 35.1 6.1 21 49-69 26-46 (153)
233 cd03078 GST_N_Metaxin1_like GS 94.1 0.17 3.7E-06 31.4 5.0 51 55-116 14-64 (73)
234 PF06953 ArsD: Arsenical resis 94.1 0.28 6E-06 33.9 6.4 52 63-116 32-90 (123)
235 KOG0868 Glutathione S-transfer 94.1 0.1 2.2E-06 38.4 4.4 58 52-111 11-68 (217)
236 PLN02412 probable glutathione 94.0 0.27 5.9E-06 35.2 6.6 22 48-69 32-53 (167)
237 TIGR03143 AhpF_homolog putativ 93.9 0.24 5.2E-06 42.2 7.2 58 44-106 365-425 (555)
238 PLN02399 phospholipid hydroper 93.8 0.3 6.6E-06 37.3 6.9 24 47-70 101-124 (236)
239 cd00340 GSH_Peroxidase Glutath 93.8 0.19 4.2E-06 35.2 5.4 22 48-70 25-46 (152)
240 PF11009 DUF2847: Protein of u 93.8 1 2.2E-05 30.2 8.5 67 45-112 18-92 (105)
241 COG4837 Uncharacterized protei 93.7 0.71 1.5E-05 30.3 7.3 69 45-113 3-87 (106)
242 PRK13972 GSH-dependent disulfi 93.7 0.25 5.4E-06 36.5 6.0 56 49-106 2-57 (215)
243 PLN02395 glutathione S-transfe 93.5 0.35 7.5E-06 35.5 6.6 62 49-112 3-64 (215)
244 PRK11752 putative S-transferas 93.5 0.24 5.1E-06 38.2 5.9 63 43-107 39-107 (264)
245 PRK11509 hydrogenase-1 operon 93.4 0.21 4.5E-06 34.9 4.9 61 49-114 38-107 (132)
246 PRK10357 putative glutathione 93.4 0.26 5.6E-06 35.9 5.7 57 50-110 2-59 (202)
247 KOG0912 Thiol-disulfide isomer 93.3 0.29 6.4E-06 38.9 6.0 66 43-111 9-85 (375)
248 KOG0913 Thiol-disulfide isomer 92.9 0.021 4.6E-07 43.5 -0.7 68 38-110 32-106 (248)
249 cd02991 UAS_ETEA UAS family, E 92.9 0.98 2.1E-05 30.6 7.5 66 35-106 5-82 (116)
250 PF02798 GST_N: Glutathione S- 92.5 0.71 1.5E-05 28.5 6.0 61 49-112 3-65 (76)
251 PF00578 AhpC-TSA: AhpC/TSA fa 92.4 0.28 6.1E-06 32.5 4.4 25 46-70 26-51 (124)
252 cd03014 PRX_Atyp2cys Peroxired 92.3 0.33 7.2E-06 33.3 4.8 25 46-70 27-52 (143)
253 cd02970 PRX_like2 Peroxiredoxi 92.0 0.54 1.2E-05 32.1 5.5 57 47-106 25-87 (149)
254 cd03019 DsbA_DsbA DsbA family, 91.8 0.16 3.5E-06 36.0 2.7 26 45-70 15-40 (178)
255 cd02968 SCO SCO (an acronym fo 90.8 1.1 2.3E-05 30.5 6.0 24 46-69 23-47 (142)
256 cd03018 PRX_AhpE_like Peroxire 90.4 0.7 1.5E-05 31.8 4.8 22 49-70 32-54 (149)
257 PF02114 Phosducin: Phosducin; 90.3 0.3 6.6E-06 38.0 3.1 62 49-116 150-216 (265)
258 PF02966 DIM1: Mitosis protein 90.1 1.1 2.4E-05 31.2 5.4 60 49-111 24-87 (133)
259 KOG0191 Thioredoxin/protein di 89.7 0.77 1.7E-05 37.3 5.2 57 45-106 162-224 (383)
260 PRK00522 tpx lipid hydroperoxi 89.7 0.82 1.8E-05 32.7 4.8 24 47-70 46-70 (167)
261 KOG1672 ATP binding protein [P 89.6 0.68 1.5E-05 34.5 4.3 77 35-116 73-158 (211)
262 PRK10606 btuE putative glutath 89.1 2.3 4.9E-05 31.2 6.8 58 46-104 26-94 (183)
263 PF04566 RNA_pol_Rpb2_4: RNA p 88.9 0.91 2E-05 27.5 3.8 33 104-140 1-33 (63)
264 cd02971 PRX_family Peroxiredox 88.8 0.92 2E-05 30.7 4.4 23 47-69 24-47 (140)
265 cd03075 GST_N_Mu GST_N family, 88.8 2.7 5.9E-05 26.3 6.2 62 51-112 3-69 (82)
266 KOG0867 Glutathione S-transfer 88.3 1.7 3.7E-05 32.7 5.9 64 48-112 2-65 (226)
267 PF04134 DUF393: Protein of un 88.1 1.7 3.6E-05 28.8 5.2 63 51-116 1-69 (114)
268 KOG2603 Oligosaccharyltransfer 88.1 6.1 0.00013 31.6 8.9 53 49-106 64-132 (331)
269 cd03022 DsbA_HCCA_Iso DsbA fam 87.5 1.1 2.4E-05 32.1 4.3 23 94-116 161-183 (192)
270 PTZ00057 glutathione s-transfe 86.6 4.2 9E-05 29.8 7.0 63 48-112 4-70 (205)
271 cd03017 PRX_BCP Peroxiredoxin 86.5 2.2 4.7E-05 28.9 5.1 19 49-67 27-46 (140)
272 cd03015 PRX_Typ2cys Peroxiredo 85.9 1.6 3.4E-05 31.2 4.4 22 49-70 33-55 (173)
273 cd03079 GST_N_Metaxin2 GST_N f 85.8 3.7 7.9E-05 25.6 5.4 52 55-116 15-66 (74)
274 KOG0914 Thioredoxin-like prote 85.3 1.2 2.6E-05 34.0 3.5 64 49-112 148-219 (265)
275 KOG4244 Failed axon connection 84.5 4.5 9.9E-05 31.6 6.4 67 39-116 36-109 (281)
276 TIGR03137 AhpC peroxiredoxin. 84.5 2.4 5.1E-05 30.9 4.8 19 49-67 35-54 (187)
277 PRK10542 glutathionine S-trans 83.7 3.6 7.8E-05 29.7 5.5 60 51-111 3-63 (201)
278 PF01323 DSBA: DSBA-like thior 83.0 2.6 5.6E-05 30.1 4.5 25 92-116 159-184 (193)
279 PRK09437 bcp thioredoxin-depen 82.1 10 0.00023 26.1 7.2 17 49-65 34-51 (154)
280 PF07172 GRP: Glycine rich pro 81.0 0.75 1.6E-05 30.3 0.9 20 7-26 3-22 (95)
281 PF11287 DUF3088: Protein of u 81.0 4.4 9.6E-05 27.5 4.6 49 56-108 23-76 (112)
282 cd03019 DsbA_DsbA DsbA family, 79.5 2.7 5.9E-05 29.6 3.5 22 92-113 135-156 (178)
283 TIGR03759 conj_TIGR03759 integ 79.5 8.6 0.00019 28.7 6.1 67 45-116 108-176 (200)
284 PF10865 DUF2703: Domain of un 79.1 5.7 0.00012 27.3 4.7 49 55-111 13-72 (120)
285 PF01323 DSBA: DSBA-like thior 77.9 2.6 5.6E-05 30.1 3.0 23 48-70 1-23 (193)
286 PF10568 Tom37: Outer mitochon 76.3 7.1 0.00015 24.1 4.2 53 56-116 13-66 (72)
287 PRK15317 alkyl hydroperoxide r 76.2 7.4 0.00016 32.8 5.7 36 35-71 5-44 (517)
288 PRK13190 putative peroxiredoxi 76.2 5.1 0.00011 29.6 4.2 17 52-68 35-51 (202)
289 PF07449 HyaE: Hydrogenase-1 e 76.1 3 6.6E-05 28.0 2.7 68 46-116 26-100 (107)
290 cd02974 AhpF_NTD_N Alkyl hydro 72.8 6.9 0.00015 25.5 3.7 31 40-71 14-44 (94)
291 COG1331 Highly conserved prote 71.8 19 0.00041 31.8 7.0 72 37-111 33-122 (667)
292 cd03024 DsbA_FrnE DsbA family, 71.4 8.3 0.00018 27.8 4.3 24 93-116 168-192 (201)
293 PF09822 ABC_transp_aux: ABC-t 70.3 39 0.00085 25.8 8.1 71 31-102 11-90 (271)
294 cd03016 PRX_1cys Peroxiredoxin 70.3 8 0.00017 28.5 4.0 19 51-69 32-50 (203)
295 TIGR03521 GldG gliding-associa 69.4 52 0.0011 28.3 9.2 56 32-87 35-98 (552)
296 PF03227 GILT: Gamma interfero 68.7 4.6 0.0001 26.8 2.3 16 48-63 2-17 (108)
297 cd05295 MDH_like Malate dehydr 66.7 13 0.00028 31.3 4.9 62 54-116 1-76 (452)
298 PRK13599 putative peroxiredoxi 66.7 11 0.00023 28.3 4.1 17 51-67 35-51 (215)
299 PLN02590 probable tyrosine dec 65.9 37 0.00079 29.2 7.6 71 47-117 228-306 (539)
300 PF12689 Acid_PPase: Acid Phos 65.5 40 0.00086 24.4 6.7 74 34-109 48-133 (169)
301 KOG1695 Glutathione S-transfer 65.3 27 0.00059 26.2 6.0 59 50-112 5-63 (206)
302 PRK09474 malE maltose ABC tran 65.1 57 0.0012 25.9 8.3 15 92-106 73-87 (396)
303 cd03013 PRX5_like Peroxiredoxi 65.0 31 0.00068 24.2 6.1 18 46-63 29-48 (155)
304 PTZ00253 tryparedoxin peroxida 64.4 32 0.00069 25.1 6.2 17 49-65 40-57 (199)
305 PRK13189 peroxiredoxin; Provis 63.1 15 0.00032 27.6 4.3 15 51-65 42-56 (222)
306 PF00282 Pyridoxal_deC: Pyrido 63.0 25 0.00055 28.5 5.9 67 46-116 139-212 (373)
307 COG1651 DsbG Protein-disulfide 63.0 8.5 0.00018 28.8 3.0 24 46-69 85-108 (244)
308 cd03025 DsbA_FrnE_like DsbA fa 62.7 5.4 0.00012 28.5 1.8 23 48-70 2-24 (193)
309 PF06053 DUF929: Domain of unk 61.0 5.8 0.00013 30.7 1.8 23 49-71 62-88 (249)
310 PRK10382 alkyl hydroperoxide r 60.1 20 0.00044 26.2 4.5 19 49-67 35-54 (187)
311 KOG3171 Conserved phosducin-li 57.9 26 0.00056 26.8 4.7 61 50-116 164-229 (273)
312 PLN02880 tyrosine decarboxylas 57.1 42 0.00091 28.3 6.4 71 47-117 180-258 (490)
313 COG3011 Predicted thiol-disulf 56.7 67 0.0014 22.6 7.7 69 45-116 6-78 (137)
314 PRK15000 peroxidase; Provision 55.7 32 0.00069 25.3 5.0 24 46-69 34-59 (200)
315 TIGR01162 purE phosphoribosyla 55.2 58 0.0013 23.4 6.0 46 49-94 3-48 (156)
316 PRK13191 putative peroxiredoxi 55.2 24 0.00051 26.4 4.2 19 51-69 40-58 (215)
317 cd03082 TRX_Fd_NuoE_W_FDH_beta 53.8 16 0.00034 22.5 2.6 18 99-116 45-62 (72)
318 PF12354 Internalin_N: Bacteri 53.1 4.4 9.5E-05 24.1 -0.0 18 1-18 1-18 (57)
319 KOG0629 Glutamate decarboxylas 53.1 1.4E+02 0.0031 25.3 9.6 73 43-116 192-271 (510)
320 TIGR03439 methyl_EasF probable 51.2 77 0.0017 25.4 6.7 31 54-84 82-115 (319)
321 CHL00132 psaF photosystem I su 50.8 68 0.0015 23.6 5.7 14 97-110 88-101 (185)
322 KOG1734 Predicted RING-contain 50.5 7.4 0.00016 30.6 0.8 19 51-69 267-285 (328)
323 PRK13697 cytochrome c6; Provis 50.4 13 0.00027 24.4 1.9 9 54-62 36-44 (111)
324 PF04956 TrbC: TrbC/VIRB2 fami 49.8 35 0.00076 21.9 3.9 27 1-27 1-28 (99)
325 cd03022 DsbA_HCCA_Iso DsbA fam 49.0 17 0.00037 25.8 2.6 22 49-70 1-22 (192)
326 PRK08118 topology modulation p 48.4 90 0.002 22.1 6.2 27 47-73 2-28 (167)
327 TIGR03140 AhpF alkyl hydropero 48.2 25 0.00054 29.7 3.7 36 35-71 5-44 (515)
328 PTZ00137 2-Cys peroxiredoxin; 48.1 52 0.0011 25.5 5.2 21 45-65 97-119 (261)
329 TIGR03757 conj_TIGR03757 integ 47.5 27 0.00059 23.7 3.1 21 96-116 80-101 (113)
330 PF07511 DUF1525: Protein of u 47.4 24 0.00053 24.0 2.9 20 97-116 80-100 (114)
331 PF14237 DUF4339: Domain of un 47.0 20 0.00043 19.7 2.1 26 105-139 5-30 (45)
332 PF05673 DUF815: Protein of un 45.1 79 0.0017 24.5 5.7 63 45-110 51-116 (249)
333 KOG2792 Putative cytochrome C 44.2 98 0.0021 24.3 6.0 47 49-95 143-201 (280)
334 COG2761 FrnE Predicted dithiol 44.1 16 0.00035 27.8 1.8 24 47-70 6-29 (225)
335 TIGR03865 PQQ_CXXCW PQQ-depend 43.5 61 0.0013 23.0 4.7 29 45-73 115-143 (162)
336 cd03024 DsbA_FrnE DsbA family, 39.6 25 0.00054 25.2 2.2 21 49-69 1-21 (201)
337 PF15643 Tox-PL-2: Papain fold 39.0 95 0.0021 20.6 4.6 26 56-81 20-46 (100)
338 COG2761 FrnE Predicted dithiol 39.0 65 0.0014 24.6 4.3 24 93-116 177-201 (225)
339 PF00004 AAA: ATPase family as 38.6 1E+02 0.0022 19.9 5.0 31 49-81 1-31 (132)
340 cd03021 DsbA_GSTK DsbA family, 38.5 41 0.00089 24.6 3.2 22 48-69 2-23 (209)
341 TIGR00439 ftsX putative protei 38.2 2E+02 0.0044 22.7 7.6 31 41-71 60-92 (309)
342 COG1999 Uncharacterized protei 36.6 1.5E+02 0.0033 21.9 6.0 46 49-97 71-127 (207)
343 PF15616 TerY-C: TerY-C metal 36.3 10 0.00023 26.4 -0.3 15 51-65 74-88 (131)
344 PF13743 Thioredoxin_5: Thiore 34.7 41 0.00089 24.2 2.6 20 51-70 2-21 (176)
345 cd03081 TRX_Fd_NuoE_FDH_gamma 34.5 32 0.00069 21.4 1.8 18 99-116 53-70 (80)
346 PF01257 2Fe-2S_thioredx: Thio 34.2 38 0.00082 23.7 2.3 18 99-116 117-134 (145)
347 KOG4420 Uncharacterized conser 34.1 16 0.00035 28.7 0.4 77 46-134 24-100 (325)
348 KOG3950 Gamma/delta sarcoglyca 33.5 28 0.00061 27.0 1.6 22 5-26 31-52 (292)
349 PF14424 Toxin-deaminase: The 33.4 88 0.0019 21.7 4.0 25 47-71 97-123 (133)
350 PF12930 DUF3836: Family of un 33.2 18 0.00038 25.2 0.5 26 1-26 1-26 (132)
351 COG3340 PepE Peptidase E [Amin 33.1 1.9E+02 0.0041 22.1 6.0 57 28-86 12-75 (224)
352 COG1905 NuoE NADH:ubiquinone o 32.8 30 0.00066 24.9 1.6 25 98-123 128-152 (160)
353 PRK11026 ftsX cell division AB 32.8 2.5E+02 0.0054 22.2 7.0 33 39-71 58-92 (309)
354 PF11466 Doppel: Prion-like pr 32.6 13 0.00029 19.0 -0.1 21 9-29 4-24 (30)
355 PHA02655 hypothetical protein; 32.3 92 0.002 19.4 3.5 54 4-63 23-76 (94)
356 PLN00019 photosystem I reactio 32.0 2.2E+02 0.0048 21.6 6.1 14 97-110 128-141 (223)
357 cd02978 KaiB_like KaiB-like fa 31.7 1.3E+02 0.0028 18.6 4.6 52 49-105 4-60 (72)
358 COG3917 NahD 2-hydroxychromene 31.3 93 0.002 23.1 3.9 20 97-116 173-192 (203)
359 PF15379 DUF4606: Domain of un 30.5 44 0.00094 22.3 2.0 16 53-68 30-45 (104)
360 PF02630 SCO1-SenC: SCO1/SenC; 30.5 1.2E+02 0.0027 21.6 4.5 45 49-93 56-111 (174)
361 KOG3160 Gamma-interferon induc 30.3 40 0.00087 25.6 2.0 19 46-64 40-58 (220)
362 PF00403 HMA: Heavy-metal-asso 30.1 88 0.0019 17.8 3.2 18 54-71 6-24 (62)
363 PF14437 MafB19-deam: MafB19-l 30.1 2E+02 0.0044 20.4 5.7 28 46-73 99-128 (146)
364 KOG3028 Translocase of outer m 30.0 1.5E+02 0.0032 23.8 5.1 58 48-116 3-66 (313)
365 PF11238 DUF3039: Protein of u 30.0 26 0.00057 20.9 0.8 13 55-67 45-57 (58)
366 KOG4498 Uncharacterized conser 28.7 51 0.0011 24.6 2.2 33 40-72 44-85 (197)
367 PF07908 D-aminoacyl_C: D-amin 28.3 58 0.0013 18.3 2.0 15 98-112 17-31 (48)
368 PF13344 Hydrolase_6: Haloacid 27.9 1.1E+02 0.0025 19.7 3.7 61 33-95 16-77 (101)
369 COG5309 Exo-beta-1,3-glucanase 27.4 2.5E+02 0.0055 22.3 5.9 63 48-111 78-144 (305)
370 KOG0911 Glutaredoxin-related p 26.5 29 0.00062 26.5 0.6 56 46-106 18-76 (227)
371 cd06388 PBP1_iGluR_AMPA_GluR4 26.3 3.4E+02 0.0073 21.8 6.9 81 35-116 51-142 (371)
372 PF01704 UDPGP: UTP--glucose-1 26.0 2.2E+02 0.0047 23.8 5.7 82 60-142 92-189 (420)
373 PF00731 AIRC: AIR carboxylase 25.9 2.2E+02 0.0048 20.2 5.0 42 54-95 10-51 (150)
374 TIGR02652 conserved hypothetic 25.8 22 0.00049 25.2 -0.0 19 51-69 5-24 (163)
375 TIGR01689 EcbF-BcbF capsule bi 25.8 2.1E+02 0.0046 19.5 4.9 42 32-73 25-79 (126)
376 TIGR03045 PS_II_C550 cytochrom 25.8 32 0.00069 24.8 0.7 7 55-61 60-66 (159)
377 PF11399 DUF3192: Protein of u 25.6 62 0.0013 21.6 2.0 15 98-112 79-93 (102)
378 PF13721 SecD-TM1: SecD export 25.4 2E+02 0.0044 18.8 9.3 19 1-19 1-19 (101)
379 COG1606 ATP-utilizing enzymes 25.4 3.4E+02 0.0073 21.3 7.3 100 29-136 25-141 (269)
380 COG2608 CopZ Copper chaperone 25.1 1.1E+02 0.0025 18.4 3.1 17 55-71 11-28 (71)
381 PF09654 DUF2396: Protein of u 25.0 23 0.00049 25.1 -0.1 15 55-69 7-21 (161)
382 PF04790 Sarcoglycan_1: Sarcog 25.0 50 0.0011 25.7 1.8 23 4-26 7-29 (264)
383 PLN03183 acetylglucosaminyltra 24.8 4.2E+02 0.009 22.2 8.5 58 58-116 89-156 (421)
384 PRK07571 bidirectional hydroge 24.7 45 0.00097 24.2 1.4 18 99-116 140-157 (169)
385 KOG3040 Predicted sugar phosph 24.5 3.2E+02 0.0069 21.0 5.8 78 32-114 24-102 (262)
386 PF12641 Flavodoxin_3: Flavodo 24.2 79 0.0017 22.6 2.6 32 24-56 46-77 (160)
387 TIGR01917 gly_red_sel_B glycin 24.1 54 0.0012 27.4 1.9 46 34-81 323-373 (431)
388 PF11839 DUF3359: Protein of u 23.9 84 0.0018 20.7 2.4 23 7-29 1-23 (96)
389 TIGR01918 various_sel_PB selen 23.5 49 0.0011 27.7 1.5 66 33-107 322-392 (431)
390 PRK03598 putative efflux pump 22.7 39 0.00085 26.6 0.8 23 1-23 1-23 (331)
391 PF13848 Thioredoxin_6: Thiore 22.3 2.7E+02 0.0059 19.1 7.4 76 26-106 76-157 (184)
392 PRK05988 formate dehydrogenase 22.1 55 0.0012 23.3 1.4 18 99-116 127-144 (156)
393 PF04332 DUF475: Protein of un 21.9 83 0.0018 25.0 2.4 14 5-18 17-30 (294)
394 PRK15137 DNA-specific endonucl 21.8 1.3E+02 0.0028 23.1 3.4 24 34-59 29-52 (235)
395 PF13451 zf-trcl: Probable zin 21.7 64 0.0014 18.5 1.3 13 55-67 34-46 (49)
396 TIGR00853 pts-lac PTS system, 21.5 1.6E+02 0.0035 18.9 3.4 29 88-116 63-91 (95)
397 PRK13883 conjugal transfer pro 21.1 3.2E+02 0.0069 19.5 7.8 40 34-73 38-79 (151)
398 PF08308 PEGA: PEGA domain; I 20.9 80 0.0017 18.7 1.8 10 103-112 14-23 (71)
399 COG5204 SPT4 Transcription elo 20.8 30 0.00064 22.9 -0.2 13 50-62 22-34 (112)
400 PRK01889 GTPase RsgA; Reviewed 20.8 2.6E+02 0.0056 22.6 5.2 54 61-116 129-187 (356)
401 PRK10523 lipoprotein involved 20.7 1.1E+02 0.0024 23.4 2.9 62 7-71 2-65 (234)
402 PF11008 DUF2846: Protein of u 20.3 94 0.002 20.6 2.2 18 99-116 40-57 (117)
403 PRK02935 hypothetical protein; 20.1 22 0.00048 23.8 -0.9 16 56-71 72-87 (110)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.95 E-value=3.6e-27 Score=157.41 Aligned_cols=92 Identities=33% Similarity=0.538 Sum_probs=81.2
Q ss_pred HhhhcCCcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCCcchh
Q 032253 41 QNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADGWSQL 120 (144)
Q Consensus 41 ~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e~~~~ 120 (144)
++++++++|+||++++||||.+++++|+++++.+.++++|.+.+..+.++++.+.+|++++|+|||||++|||+++
T Consensus 2 ~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~dd---- 77 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLEN---- 77 (99)
T ss_pred hhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHH----
Confidence 4678899999999999999999999999999764456666555556667788999999999999999999999999
Q ss_pred hhhhhHHHHHHHHcCchhHhhcc
Q 032253 121 SLAHSTYLKAAVLSGQLQQLLGT 143 (144)
Q Consensus 121 ~~~~~~~~~~~~~~g~L~~~l~~ 143 (144)
+.+|+++|+|+++|++
T Consensus 78 -------l~~l~~~G~L~~~l~~ 93 (99)
T TIGR02189 78 -------VMALHISGSLVPMLKQ 93 (99)
T ss_pred -------HHHHHHcCCHHHHHHH
Confidence 9999999999999964
No 2
>PRK10824 glutaredoxin-4; Provisional
Probab=99.94 E-value=1.1e-26 Score=158.52 Aligned_cols=96 Identities=26% Similarity=0.427 Sum_probs=86.1
Q ss_pred hhHHHHHHhhhcCCcEEEEec-----CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032253 34 HSVSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~Vvvf~~-----~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g 108 (144)
+++.+.+++++++++|+||++ |+||||++++++|+++++. |..+|+..++ +++++|.+.+|+++||+|||||
T Consensus 2 ~~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~--~~~idi~~d~-~~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 2 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGER--FAYVDILQNP-DIRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred chHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCC--ceEEEecCCH-HHHHHHHHHhCCCCCCeEEECC
Confidence 457788999999999999999 5999999999999999966 3456776664 5789999999999999999999
Q ss_pred EEEeccCCcchhhhhhhHHHHHHHHcCchhHhhcc
Q 032253 109 EHIGGADGWSQLSLAHSTYLKAAVLSGQLQQLLGT 143 (144)
Q Consensus 109 ~~igg~~e~~~~~~~~~~~~~~~~~~g~L~~~l~~ 143 (144)
++|||+|+ +.+|+++|+|+++|++
T Consensus 79 ~~IGG~dd-----------l~~l~~~G~L~~lL~~ 102 (115)
T PRK10824 79 ELVGGCDI-----------VIEMYQRGELQQLIKE 102 (115)
T ss_pred EEEcChHH-----------HHHHHHCCCHHHHHHH
Confidence 99999999 9999999999999964
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-26 Score=154.04 Aligned_cols=97 Identities=51% Similarity=0.782 Sum_probs=91.8
Q ss_pred HHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccC
Q 032253 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGAD 115 (144)
Q Consensus 36 ~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~ 115 (144)
..+.+++++..++|+||++++||||+.++.+|...++.+.++++|..++..+++..+.+.+|.+++|.|||+|++|||.+
T Consensus 3 ~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred HHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHH
Confidence 34568999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhHHHHHHHHcCchhHhhcc
Q 032253 116 GWSQLSLAHSTYLKAAVLSGQLQQLLGT 143 (144)
Q Consensus 116 e~~~~~~~~~~~~~~~~~~g~L~~~l~~ 143 (144)
+ +++++.+|+|.++|+.
T Consensus 83 d-----------l~~lh~~G~L~~~l~~ 99 (104)
T KOG1752|consen 83 D-----------LMALHKSGELVPLLKE 99 (104)
T ss_pred H-----------HHHHHHcCCHHHHHHH
Confidence 9 9999999999999964
No 4
>PHA03050 glutaredoxin; Provisional
Probab=99.94 E-value=2.6e-26 Score=155.42 Aligned_cols=96 Identities=28% Similarity=0.490 Sum_probs=84.1
Q ss_pred HHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCCCC-eEEEEeCCC--CHHHHHHHHHHHcCCCcccEEEECCEEEec
Q 032253 37 SAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQP-FVVELDLRD--DGAQIQYILLDLVGRRTVPQIFVNGEHIGG 113 (144)
Q Consensus 37 ~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~-~~~~id~~~--~~~~~~~~l~~~~g~~~vP~vfi~g~~igg 113 (144)
.+++.+.+++++|+||+++|||||.+++++|+++++.. .|..+|++. +..++++++.+.+|.++||+|||||++|||
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGG 82 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeC
Confidence 46788899999999999999999999999999999632 145566554 445678999999999999999999999999
Q ss_pred cCCcchhhhhhhHHHHHHHHcCchhHhhcc
Q 032253 114 ADGWSQLSLAHSTYLKAAVLSGQLQQLLGT 143 (144)
Q Consensus 114 ~~e~~~~~~~~~~~~~~~~~~g~L~~~l~~ 143 (144)
++| +.+|+++|+|.++|+.
T Consensus 83 ~dd-----------l~~l~~~g~L~~~l~~ 101 (108)
T PHA03050 83 YSD-----------LLEIDNMDALGDILSS 101 (108)
T ss_pred hHH-----------HHHHHHcCCHHHHHHH
Confidence 999 9999999999999964
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.93 E-value=2.2e-25 Score=148.29 Aligned_cols=91 Identities=27% Similarity=0.474 Sum_probs=82.9
Q ss_pred HHHHHhhhcCCcEEEEec-----CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 37 SAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 37 ~~~~~~~~~~~~Vvvf~~-----~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
.+.+++++++++|++|++ ++||||.+++++|+++++. |.++|+..++ +.++++.+.+|++++|+|||||+++
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~--~~~~di~~~~-~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVP--FAYVNVLEDP-EIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC--EEEEECCCCH-HHHHHHHHHhCCCCCCEEEECCEEE
Confidence 367888999999999987 8999999999999999975 5788887774 5688999999999999999999999
Q ss_pred eccCCcchhhhhhhHHHHHHHHcCchhHhh
Q 032253 112 GGADGWSQLSLAHSTYLKAAVLSGQLQQLL 141 (144)
Q Consensus 112 gg~~e~~~~~~~~~~~~~~~~~~g~L~~~l 141 (144)
||+++ +.+|+++|+|+++|
T Consensus 79 GG~dd-----------l~~l~~~g~L~~~l 97 (97)
T TIGR00365 79 GGCDI-----------IMEMYQSGELQTLL 97 (97)
T ss_pred eChHH-----------HHHHHHCcChHHhC
Confidence 99999 99999999999886
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.90 E-value=1.9e-23 Score=137.11 Aligned_cols=84 Identities=31% Similarity=0.515 Sum_probs=76.3
Q ss_pred HhhhcCCcEEEEec-----CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccC
Q 032253 41 QNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGAD 115 (144)
Q Consensus 41 ~~~~~~~~Vvvf~~-----~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~ 115 (144)
+++++.++|+||++ ++||+|.+++++|++.++. |..+|+..+ .+.++++.+.+|..++|+|||||++|||++
T Consensus 2 ~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~--y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~ 78 (90)
T cd03028 2 KKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD--FGTFDILED-EEVRQGLKEYSNWPTFPQLYVNGELVGGCD 78 (90)
T ss_pred hhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC--eEEEEcCCC-HHHHHHHHHHhCCCCCCEEEECCEEEeCHH
Confidence 46788899999998 6999999999999999965 578888877 456889999999999999999999999999
Q ss_pred CcchhhhhhhHHHHHHHHcCchh
Q 032253 116 GWSQLSLAHSTYLKAAVLSGQLQ 138 (144)
Q Consensus 116 e~~~~~~~~~~~~~~~~~~g~L~ 138 (144)
+ +++|+++|+|+
T Consensus 79 ~-----------l~~l~~~g~L~ 90 (90)
T cd03028 79 I-----------VKEMHESGELQ 90 (90)
T ss_pred H-----------HHHHHHcCCcC
Confidence 9 99999999996
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.89 E-value=1.8e-22 Score=150.30 Aligned_cols=97 Identities=23% Similarity=0.380 Sum_probs=88.3
Q ss_pred chhHHHHHHhhhcCCcEEEEec-----CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC
Q 032253 33 DHSVSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN 107 (144)
Q Consensus 33 ~~~~~~~~~~~~~~~~Vvvf~~-----~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~ 107 (144)
.+++.+.+++++..++|++|++ |+||||++++.+|+++++. |.++|+..+ ++.++++.+.+|++++|+||||
T Consensus 99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~--y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVK--YETYNIFED-PDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCC--EEEEEcCCC-HHHHHHHHHHhCCCCCCeEEEC
Confidence 4568899999999999999988 6999999999999999965 578898887 4568899999999999999999
Q ss_pred CEEEeccCCcchhhhhhhHHHHHHHHcCchhHhhcc
Q 032253 108 GEHIGGADGWSQLSLAHSTYLKAAVLSGQLQQLLGT 143 (144)
Q Consensus 108 g~~igg~~e~~~~~~~~~~~~~~~~~~g~L~~~l~~ 143 (144)
|++|||+++ +++|+++|+|+++|..
T Consensus 176 G~~IGG~d~-----------l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 176 GELIGGHDI-----------IKELYESNSLRKVIPD 200 (204)
T ss_pred CEEEcChHH-----------HHHHHHcCChhhhhhh
Confidence 999999999 9999999999999853
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.88 E-value=4.9e-22 Score=128.30 Aligned_cols=82 Identities=37% Similarity=0.657 Sum_probs=74.0
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCCcchhhhhhhH
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADGWSQLSLAHST 126 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e~~~~~~~~~~ 126 (144)
.+|++|++++||+|++++.+|++.++. |..+|++.+++ .++++.+.+|..++|+||+||+++||+++
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~--y~~~dv~~~~~-~~~~l~~~~g~~~vP~i~~~g~~igG~~~---------- 68 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVS--FQEIPIDGDAA-KREEMIKRSGRTTVPQIFIDAQHIGGCDD---------- 68 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCC--cEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEeCHHH----------
Confidence 479999999999999999999999975 47788877754 36788999999999999999999999999
Q ss_pred HHHHHHHcCchhHhhc
Q 032253 127 YLKAAVLSGQLQQLLG 142 (144)
Q Consensus 127 ~~~~~~~~g~L~~~l~ 142 (144)
+.++..+|+|.++|+
T Consensus 69 -~~~~~~~g~l~~~~~ 83 (83)
T PRK10638 69 -LYALDARGGLDPLLK 83 (83)
T ss_pred -HHHHHHcCCHHHHhC
Confidence 999999999999985
No 9
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.88 E-value=4.6e-22 Score=127.64 Aligned_cols=82 Identities=54% Similarity=0.886 Sum_probs=74.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC--CeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCCcchhhhhhhH
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADGWSQLSLAHST 126 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~--~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e~~~~~~~~~~ 126 (144)
|++|+++|||+|++++++|+++++. ..++++|.+.+..+.++++.+.+|..++|++|+||+++||+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~---------- 70 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSD---------- 70 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHH----------
Confidence 6899999999999999999999965 3367787777777778889999999999999999999999999
Q ss_pred HHHHHHHcCchhHhh
Q 032253 127 YLKAAVLSGQLQQLL 141 (144)
Q Consensus 127 ~~~~~~~~g~L~~~l 141 (144)
+.++.++|+|+++|
T Consensus 71 -~~~~~~~g~l~~~~ 84 (84)
T TIGR02180 71 -LLALYKSGKLAELL 84 (84)
T ss_pred -HHHHHHcCChhhhC
Confidence 99999999999876
No 10
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.88 E-value=4.1e-22 Score=127.25 Aligned_cols=79 Identities=41% Similarity=0.748 Sum_probs=71.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCCcchhhhhhhHHH
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADGWSQLSLAHSTYL 128 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e~~~~~~~~~~~~ 128 (144)
|++|++++||+|.+++++|+++++. |..+|++.+++. ++++.+.+|..++|+||+||+++||+++ +
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~--~~~~di~~~~~~-~~~~~~~~g~~~vP~i~i~g~~igg~~~-----------~ 66 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVT--FTEIRVDGDPAL-RDEMMQRSGRRTVPQIFIGDVHVGGCDD-----------L 66 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCC--cEEEEecCCHHH-HHHHHHHhCCCCcCEEEECCEEEcChHH-----------H
Confidence 6899999999999999999999975 577888877544 6778888999999999999999999999 9
Q ss_pred HHHHHcCchhHhh
Q 032253 129 KAAVLSGQLQQLL 141 (144)
Q Consensus 129 ~~~~~~g~L~~~l 141 (144)
.+++++|+|+++|
T Consensus 67 ~~~~~~g~l~~~l 79 (79)
T TIGR02181 67 YALDREGKLDPLL 79 (79)
T ss_pred HHHHHcCChhhhC
Confidence 9999999999876
No 11
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.7e-21 Score=127.67 Aligned_cols=97 Identities=30% Similarity=0.467 Sum_probs=88.6
Q ss_pred hhHHHHHHhhhcCCcEEEEec-----CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032253 34 HSVSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~Vvvf~~-----~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g 108 (144)
.++.++++.+++.++|++|.+ |.|.|..++..+|...++.. |..+|+-.| +++|+.++++++|+++|++||+|
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~-~~~vnVL~d-~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVD-FAYVDVLQD-PEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcc-eeEEeeccC-HHHHhccHhhcCCCCCceeeECC
Confidence 456788999999999999987 78999999999999999422 689999888 67899999999999999999999
Q ss_pred EEEeccCCcchhhhhhhHHHHHHHHcCchhHhhcc
Q 032253 109 EHIGGADGWSQLSLAHSTYLKAAVLSGQLQQLLGT 143 (144)
Q Consensus 109 ~~igg~~e~~~~~~~~~~~~~~~~~~g~L~~~l~~ 143 (144)
++|||+|- +.+|+++|+|+++|++
T Consensus 80 EfvGG~DI-----------v~Em~q~GELq~~l~~ 103 (105)
T COG0278 80 EFVGGCDI-----------VREMYQSGELQTLLKE 103 (105)
T ss_pred EEeccHHH-----------HHHHHHcchHHHHHHh
Confidence 99999999 9999999999999975
No 12
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.86 E-value=2.6e-21 Score=123.77 Aligned_cols=82 Identities=52% Similarity=0.935 Sum_probs=73.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCCcchhhhhhhHH
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADGWSQLSLAHSTY 127 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e~~~~~~~~~~~ 127 (144)
+|++|++++||+|.+++++|+++++.+.++++|...+..+.++++.+.+|..++|++|+||+++||+++
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~----------- 69 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDD----------- 69 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHH-----------
Confidence 589999999999999999999999754467888777766667789999999999999999999999999
Q ss_pred HHHHHHcCchhHh
Q 032253 128 LKAAVLSGQLQQL 140 (144)
Q Consensus 128 ~~~~~~~g~L~~~ 140 (144)
+.++.++|+|+++
T Consensus 70 ~~~~~~~g~l~~~ 82 (82)
T cd03419 70 LMALHKSGKLVKL 82 (82)
T ss_pred HHHHHHcCCccCC
Confidence 9999999999864
No 13
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.84 E-value=1e-20 Score=134.27 Aligned_cols=82 Identities=27% Similarity=0.499 Sum_probs=74.5
Q ss_pred cEEEEecC------CChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCC----CcccEEEECCEEEeccCCc
Q 032253 48 KIVIFSKS------YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR----RTVPQIFVNGEHIGGADGW 117 (144)
Q Consensus 48 ~Vvvf~~~------~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~----~~vP~vfi~g~~igg~~e~ 117 (144)
+|++|+++ +||+|.+++++|+.+++. |.++|++.+++ .+++|.+.+|. .++|+|||+|++|||.++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~--~~e~DVs~~~~-~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~de- 76 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVK--FDERDVSMDSG-FREELRELLGAELKAVSLPRVFVDGRYLGGAEE- 76 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCc--EEEEECCCCHH-HHHHHHHHhCCCCCCCCCCEEEECCEEEecHHH-
Confidence 58999999 999999999999999976 68999998854 47788888775 899999999999999999
Q ss_pred chhhhhhhHHHHHHHHcCchhHhhcc
Q 032253 118 SQLSLAHSTYLKAAVLSGQLQQLLGT 143 (144)
Q Consensus 118 ~~~~~~~~~~~~~~~~~g~L~~~l~~ 143 (144)
+.+|+++|+|+++|+.
T Consensus 77 ----------l~~L~e~G~L~~lL~~ 92 (147)
T cd03031 77 ----------VLRLNESGELRKLLKG 92 (147)
T ss_pred ----------HHHHHHcCCHHHHHhh
Confidence 9999999999999974
No 14
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.8e-20 Score=119.58 Aligned_cols=78 Identities=40% Similarity=0.750 Sum_probs=66.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHH-HHHHHHHHHcCCCcccEEEECCEEEeccCCcchhhhhhhH
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGA-QIQYILLDLVGRRTVPQIFVNGEHIGGADGWSQLSLAHST 126 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~-~~~~~l~~~~g~~~vP~vfi~g~~igg~~e~~~~~~~~~~ 126 (144)
.|+||++++||||.+++++|++.++. |.++|++.+.. +.++.+.+..|.++||+|||||+++||.++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~--~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d---------- 69 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVD--YEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDD---------- 69 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCC--cEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCccc----------
Confidence 58999999999999999999999976 56777766542 445677777799999999999999999999
Q ss_pred HHHHHHHcCchh
Q 032253 127 YLKAAVLSGQLQ 138 (144)
Q Consensus 127 ~~~~~~~~g~L~ 138 (144)
+.++...|.|.
T Consensus 70 -~~~~~~~~~l~ 80 (80)
T COG0695 70 -LDALEAKGKLD 80 (80)
T ss_pred -HHHHHhhccCC
Confidence 99998888763
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.83 E-value=6e-20 Score=115.75 Aligned_cols=74 Identities=41% Similarity=0.708 Sum_probs=65.4
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCC-cccEEEECCEEEeccCCcchhhhhhhH
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRR-TVPQIFVNGEHIGGADGWSQLSLAHST 126 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~-~vP~vfi~g~~igg~~e~~~~~~~~~~ 126 (144)
+|++|++++||+|.+++.+|+++++. |.++|++.+++. ++++.+.+|.. ++|+||+||+++||+++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~--~~~i~i~~~~~~-~~~~~~~~~~~~~vP~v~i~g~~igg~~~---------- 67 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVD--YEEIDVDGDPAL-REEMINRSGGRRTVPQIFIGDVHIGGCDD---------- 67 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCc--EEEEECCCCHHH-HHHHHHHhCCCCccCEEEECCEEEeChHH----------
Confidence 48999999999999999999999965 578888887544 66787888877 99999999999999999
Q ss_pred HHHHHHHcC
Q 032253 127 YLKAAVLSG 135 (144)
Q Consensus 127 ~~~~~~~~g 135 (144)
+.+++++|
T Consensus 68 -~~~~~~~g 75 (75)
T cd03418 68 -LYALERKG 75 (75)
T ss_pred -HHHHHhCc
Confidence 99999887
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.80 E-value=2.1e-19 Score=113.22 Aligned_cols=67 Identities=24% Similarity=0.422 Sum_probs=60.7
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
.+|++|++++||+|++++.+|++.++. |..+|+..+++. ++++.+.+|..++|++|+||++|||++|
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~--~~~~di~~~~~~-~~el~~~~g~~~vP~v~i~~~~iGg~~~ 67 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLP--YVEINIDIFPER-KAELEERTGSSVVPQIFFNEKLVGGLTD 67 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCc--eEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 368999999999999999999999975 578899887654 7789999999999999999999999999
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.80 E-value=4.6e-19 Score=113.45 Aligned_cols=69 Identities=33% Similarity=0.638 Sum_probs=60.3
Q ss_pred hcCCcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 44 IFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 44 ~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
-++++|++|++++||+|++++++|+++++. |.++|++.+.. .+++...+|..++|+||+||+++||+++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~--y~~idi~~~~~--~~~~~~~~g~~~vP~i~i~g~~igG~~~ 73 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYD--FEEIPLGNDAR--GRSLRAVTGATTVPQVFIGGKLIGGSDE 73 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCC--cEEEECCCChH--HHHHHHHHCCCCcCeEEECCEEEcCHHH
Confidence 457789999999999999999999999976 56788877644 3467788899999999999999999999
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.79 E-value=7.8e-19 Score=110.24 Aligned_cols=65 Identities=37% Similarity=0.661 Sum_probs=57.7
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+|++|++++||+|.+++++|+++++. |.++|++.+.. .+++...+|..++|+||+||+++||+++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~--~~~~~v~~~~~--~~~~~~~~g~~~vP~ifi~g~~igg~~~ 66 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS--YEEIPLGKDIT--GRSLRAVTGAMTVPQVFIDGELIGGSDD 66 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC--cEEEECCCChh--HHHHHHHhCCCCcCeEEECCEEEeCHHH
Confidence 68999999999999999999999966 47888877653 4567888899999999999999999999
No 19
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.78 E-value=1.3e-18 Score=112.63 Aligned_cols=74 Identities=39% Similarity=0.675 Sum_probs=61.8
Q ss_pred CcEEEEecCCChhHHHHHHHHHhc-----CCCCeEEEEeCCCCHHHHHHHHHHHcCC--CcccEEEECCEEEeccCCcch
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADL-----NEQPFVVELDLRDDGAQIQYILLDLVGR--RTVPQIFVNGEHIGGADGWSQ 119 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~-----~~~~~~~~id~~~~~~~~~~~l~~~~g~--~~vP~vfi~g~~igg~~e~~~ 119 (144)
++|++|++++||+|++++++|+++ ++. +.++|++.++.+ .+++.+.+|. .++|+||+||+++||+++
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~--~~~idi~~~~~~-~~el~~~~~~~~~~vP~ifi~g~~igg~~~--- 74 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFD--YRYVDIHAEGIS-KADLEKTVGKPVETVPQIFVDQKHIGGCTD--- 74 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCc--EEEEECCCChHH-HHHHHHHHCCCCCcCCEEEECCEEEcCHHH---
Confidence 369999999999999999999994 433 688999887544 4567787775 799999999999999999
Q ss_pred hhhhhhHHHHHHHHc
Q 032253 120 LSLAHSTYLKAAVLS 134 (144)
Q Consensus 120 ~~~~~~~~~~~~~~~ 134 (144)
+.++.+.
T Consensus 75 --------~~~~~~~ 81 (85)
T PRK11200 75 --------FEAYVKE 81 (85)
T ss_pred --------HHHHHHH
Confidence 8877653
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.78 E-value=1.2e-18 Score=113.38 Aligned_cols=75 Identities=36% Similarity=0.660 Sum_probs=62.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC---CeEEEEeCCCCHHHHHHHHHHHcCC--CcccEEEECCEEEeccCCcchhhhh
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGR--RTVPQIFVNGEHIGGADGWSQLSLA 123 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~--~~vP~vfi~g~~igg~~e~~~~~~~ 123 (144)
|+||+++|||+|.+++++|++++.. ..+.++|+..+..+ ++++.+.+|. .+||+||+||+++||+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~-~~~l~~~~g~~~~tVP~ifi~g~~igG~~d------- 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS-KADLEKTVGKPVETVPQIFVDEKHVGGCTD------- 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH-HHHHHHHhCCCCCCcCeEEECCEEecCHHH-------
Confidence 7899999999999999999999642 12688898866533 4568888886 799999999999999999
Q ss_pred hhHHHHHHHHcC
Q 032253 124 HSTYLKAAVLSG 135 (144)
Q Consensus 124 ~~~~~~~~~~~g 135 (144)
|.++.+++
T Consensus 74 ----l~~~~~~~ 81 (86)
T TIGR02183 74 ----FEQLVKEN 81 (86)
T ss_pred ----HHHHHHhc
Confidence 99887764
No 21
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.73 E-value=2.7e-17 Score=101.51 Aligned_cols=66 Identities=53% Similarity=0.929 Sum_probs=60.2
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+|++|++++||+|++++.+|+++++. |.++|+..+++ .++++.+.+|..++|++|+||+++||+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~--~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~~~~~igg~~~ 66 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIE--FEEIDILEDGE-LREELKELSGWPTVPQIFINGEFIGGYDD 66 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCc--EEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEecHHH
Confidence 58999999999999999999999965 58999988865 47789999999999999999999999999
No 22
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.72 E-value=2.8e-17 Score=133.91 Aligned_cols=82 Identities=35% Similarity=0.517 Sum_probs=67.2
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHH--HHHH-----HHHHcCCCcccEEEECCEEEeccCCcch
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQ--IQYI-----LLDLVGRRTVPQIFVNGEHIGGADGWSQ 119 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~--~~~~-----l~~~~g~~~vP~vfi~g~~igg~~e~~~ 119 (144)
.+|+||++++||+|++++++|++.++. |.++|+++++.. +.++ +...+|..+||+|||||++|||+++
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~--~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~--- 76 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIP--FTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN--- 76 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCC--eEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH---
Confidence 469999999999999999999999965 467888766542 1122 2223688999999999999999999
Q ss_pred hhhhhhHHHHHHHHcCchhHhhcc
Q 032253 120 LSLAHSTYLKAAVLSGQLQQLLGT 143 (144)
Q Consensus 120 ~~~~~~~~~~~~~~~g~L~~~l~~ 143 (144)
+++ .+|+|.+++++
T Consensus 77 --------l~~--~~g~l~~~~~~ 90 (410)
T PRK12759 77 --------LMA--RAGEVIARVKG 90 (410)
T ss_pred --------HHH--HhCCHHHHhcC
Confidence 877 89999999876
No 23
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.69 E-value=1.3e-16 Score=96.70 Aligned_cols=60 Identities=37% Similarity=0.744 Sum_probs=54.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
|++|++++||+|.+++++|++.++. |..+|++.++ +.++++.+.+|..++|+||+||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~--y~~~dv~~~~-~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIP--YEEVDVDEDE-EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBE--EEEEEGGGSH-HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCe--eeEcccccch-hHHHHHHHHcCCCccCEEEECCEEC
Confidence 7899999999999999999999965 5899998885 4488899999999999999999986
No 24
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.7e-16 Score=118.00 Aligned_cols=92 Identities=25% Similarity=0.385 Sum_probs=85.2
Q ss_pred HHHHhhhcCCcEEEEec-----CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEe
Q 032253 38 AFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 38 ~~~~~~~~~~~Vvvf~~-----~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~ig 112 (144)
+.+..++..++|++|.+ |.|++.+++..+|+++++. |...|+..| +++|+-++.++.|+|+||+||+|+++|
T Consensus 130 ~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~--~~~fdIL~D-eelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 130 NRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVN--YTIFDVLTD-EELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred HHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCC--eeEEeccCC-HHHHHHhhhhcCCCCccceeECCEecc
Confidence 37888999999999987 6799999999999999977 689999988 568999999999999999999999999
Q ss_pred ccCCcchhhhhhhHHHHHHHHcCchhHhhcc
Q 032253 113 GADGWSQLSLAHSTYLKAAVLSGQLQQLLGT 143 (144)
Q Consensus 113 g~~e~~~~~~~~~~~~~~~~~~g~L~~~l~~ 143 (144)
|+|- +.+|+++|+|+..|++
T Consensus 207 GlDI-----------l~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 207 GLDI-----------LKEMHEKGELVYTLKE 226 (227)
T ss_pred CcHH-----------HHHHhhcccHHHHhhc
Confidence 9999 9999999999999875
No 25
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.66 E-value=8.3e-16 Score=101.14 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=68.5
Q ss_pred EEEEecCC------ChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCC----CcccEEEECCEEEeccCCcc
Q 032253 49 IVIFSKSY------CPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR----RTVPQIFVNGEHIGGADGWS 118 (144)
Q Consensus 49 Vvvf~~~~------Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~----~~vP~vfi~g~~igg~~e~~ 118 (144)
|++|+++- =-.|+.++.+|+..++. |.++|++.+++. ++++.+.+|. .++|+|||||+++||+++
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~--f~eiDI~~d~~~-r~em~~~~~~~~g~~tvPQIFi~~~~iGg~dd-- 76 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIE--FEEVDISMNEEN-RQWMRENVPNENGKPLPPQIFNGDEYCGDYEA-- 76 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCc--eEEEecCCCHHH-HHHHHHhcCCCCCCCCCCEEEECCEEeeCHHH--
Confidence 56777643 34788999999999976 699999988655 7788888754 899999999999999999
Q ss_pred hhhhhhhHHHHHHHHcCchhHhhc
Q 032253 119 QLSLAHSTYLKAAVLSGQLQQLLG 142 (144)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~L~~~l~ 142 (144)
+.++.++|+|.++|+
T Consensus 77 ---------l~~l~e~g~L~~lLk 91 (92)
T cd03030 77 ---------FFEAKENNTLEEFLK 91 (92)
T ss_pred ---------HHHHHhCCCHHHHhC
Confidence 999999999999986
No 26
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.65 E-value=1e-15 Score=98.54 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=56.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+|++|++++||+|..++.+|++.++. |.++|++.+++. .+++.. .|..++|+++++|..++||+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~--~~~idi~~~~~~-~~~~~~-~g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFD--FEMINVDRVPEA-AETLRA-QGFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCc--eEEEECCCCHHH-HHHHHH-cCCCCcCEEEECCEEEecCCH
Confidence 69999999999999999999999975 588899888654 455555 589999999999999999998
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.65 E-value=7.1e-16 Score=96.83 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=54.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCE-EEeccCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGE-HIGGADG 116 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~-~igg~~e 116 (144)
|++|++++||+|++++++|++.++. |..+|++.+++. .+++.. .|..++|+++++|+ ++|||+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~--~~~~di~~~~~~-~~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIA--FEEINIDEQPEA-IDYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCc--eEEEECCCCHHH-HHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 5799999999999999999999975 578898888654 556665 48899999999775 9999998
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.56 E-value=3.5e-14 Score=87.91 Aligned_cols=66 Identities=29% Similarity=0.559 Sum_probs=56.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+|.+|+.+|||+|++++.+|++.++. +..+|++.++.. .+++.+.+|..++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~--~~~vdi~~~~~~-~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIA--FEEIDVEKDSAA-REEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCe--EEEEeccCCHHH-HHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 47899999999999999999998865 578899887554 4567778899999999999999999876
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.47 E-value=5.4e-13 Score=82.43 Aligned_cols=66 Identities=29% Similarity=0.577 Sum_probs=56.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
++++|+.+|||+|++++.+|++.++. +..+|++.++. ..+++.+.++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~--~~~~~i~~~~~-~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIP--FEEVDVDEDPE-ALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCC--eEEEeCCCCHH-HHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 47899999999999999999999865 46777776644 35667777788999999999999999987
No 30
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.40 E-value=1.1e-12 Score=80.74 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=48.7
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCC---CeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEe
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~ig 112 (144)
+|++|+++|||+|++++++|+++... ..+..+|++.++ ++.+.+|..++|++++||++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~-----~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFP-----DLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCH-----hHHHHcCCcccCEEEECCEEEE
Confidence 58999999999999999999987311 126788887764 3667889999999999999775
No 31
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.38 E-value=5e-12 Score=79.26 Aligned_cols=66 Identities=20% Similarity=0.477 Sum_probs=52.3
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHc-CCCcccEEEE-CCEEEeccCC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLV-GRRTVPQIFV-NGEHIGGADG 116 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~-g~~~vP~vfi-~g~~igg~~e 116 (144)
+|++|+++|||+|++++.+|+++++. +..+|+++++.. .+++...+ |..++|++++ ||+.+.....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~--~~~idi~~~~~~-~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~ 68 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAA--YEWVDIEEDEGA-ADRVVSVNNGNMTVPTVKFADGSFLTNPSA 68 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCc--eEEEeCcCCHhH-HHHHHHHhCCCceeCEEEECCCeEecCCCH
Confidence 48899999999999999999999965 477888777543 45666665 8899999977 6677765554
No 32
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.9e-12 Score=98.93 Aligned_cols=84 Identities=26% Similarity=0.493 Sum_probs=74.2
Q ss_pred CCcEEEEec------CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCC----CcccEEEECCEEEeccC
Q 032253 46 SNKIVIFSK------SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR----RTVPQIFVNGEHIGGAD 115 (144)
Q Consensus 46 ~~~Vvvf~~------~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~----~~vP~vfi~g~~igg~~ 115 (144)
...||+|++ .+--.|..++.+|+.+++. |.+.|++.|. .+++||++..|. .+.|+|||+|++|||.+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~--v~ERDVSMd~-~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgae 206 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVK--VDERDVSMDS-EFREELQELLGEDEKAVSLPRVFVKGRYIGGAE 206 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceE--EEEecccccH-HHHHHHHHHHhcccccCccCeEEEccEEeccHH
Confidence 356999997 5789999999999999977 7899999985 447888888765 57899999999999999
Q ss_pred CcchhhhhhhHHHHHHHHcCchhHhhcc
Q 032253 116 GWSQLSLAHSTYLKAAVLSGQLQQLLGT 143 (144)
Q Consensus 116 e~~~~~~~~~~~~~~~~~~g~L~~~l~~ 143 (144)
+ +.+|++.|+|.++|+.
T Consensus 207 e-----------V~~LnE~GkL~~lL~~ 223 (281)
T KOG2824|consen 207 E-----------VVRLNEEGKLGKLLKG 223 (281)
T ss_pred H-----------hhhhhhcchHHHHHhc
Confidence 9 9999999999999975
No 33
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.24 E-value=4e-11 Score=78.38 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=58.8
Q ss_pred hHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCC-CC--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNE-QP--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 35 ~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~-~~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
..+++++++.++-++.+|+.+|||+|+.+.++++++.. .+ .+..+|++..+ ++.+.+|..++|++++||+.+
T Consensus 2 ~~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~-----e~a~~~~V~~vPt~vidG~~~ 76 (89)
T cd03026 2 DLLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQ-----DEVEERGIMSVPAIFLNGELF 76 (89)
T ss_pred hHHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCH-----HHHHHcCCccCCEEEECCEEE
Confidence 35677888888889999999999999999999988741 11 26777877654 366789999999999999966
Q ss_pred e
Q 032253 112 G 112 (144)
Q Consensus 112 g 112 (144)
+
T Consensus 77 ~ 77 (89)
T cd03026 77 G 77 (89)
T ss_pred E
Confidence 4
No 34
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.17 E-value=2.3e-10 Score=72.55 Aligned_cols=64 Identities=30% Similarity=0.527 Sum_probs=48.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhc----CCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCE-EEeccCC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGE-HIGGADG 116 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~----~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~-~igg~~e 116 (144)
+|.+|+++|||+|+.+++.|.++ +....+..+|.+.+++ +.+.+|..++|++++||+ .+.|..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-----~~~~~~v~~vPt~~~~g~~~~~G~~~ 70 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-----KAMEYGIMAVPAIVINGDVEFIGAPT 70 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-----HHHHcCCccCCEEEECCEEEEecCCC
Confidence 58899999999999999998764 3222367888887653 445689999999999998 4445433
No 35
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.10 E-value=7.5e-10 Score=73.63 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=59.4
Q ss_pred cEEEEecCCCh------hHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcC---------CCcccEEEECCEEEe
Q 032253 48 KIVIFSKSYCP------YCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVG---------RRTVPQIFVNGEHIG 112 (144)
Q Consensus 48 ~Vvvf~~~~Cp------~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g---------~~~vP~vfi~g~~ig 112 (144)
.|.||+++.-. .|.++..+|+..++. |..+|+..+++. ++.+++..| ..-.|+||+||+++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~--fe~vDIa~~e~~-r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIP--FEEVDIAMDEEA-RQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT----EEEEETTT-HHH-HHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCC--cEEEeCcCCHHH-HHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 46778765443 456888899999965 689999998554 777887763 345689999999999
Q ss_pred ccCCcchhhhhhhHHHHHHHHcCchhHhhc
Q 032253 113 GADGWSQLSLAHSTYLKAAVLSGQLQQLLG 142 (144)
Q Consensus 113 g~~e~~~~~~~~~~~~~~~~~~g~L~~~l~ 142 (144)
++++ +.++.++|+|.++|+
T Consensus 79 dye~-----------f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYED-----------FEEANENGELEEFLK 97 (99)
T ss_dssp EHHH-----------HHHHHCTT-HHHHHT
T ss_pred eHHH-----------HHHHHhhCHHHHHhC
Confidence 9999 999999999999986
No 36
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.04 E-value=1.7e-09 Score=74.58 Aligned_cols=67 Identities=16% Similarity=0.381 Sum_probs=44.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC--CeEEEEeCCCCH-------HHHHHHHHHHcC----CCcccEEEE--CCEEEec
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLRDDG-------AQIQYILLDLVG----RRTVPQIFV--NGEHIGG 113 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~--~~~~~id~~~~~-------~~~~~~l~~~~g----~~~vP~vfi--~g~~igg 113 (144)
++.|+++|||+|+.+.+.|.++... ..++.+|++.+. .++ .++.+.++ ..++|++++ +|+.++.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~-~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~ 105 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDL-TAFRSRFGIPTSFMGTPTFVHITDGKQVSV 105 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHH-HHHHHHcCCcccCCCCCEEEEEeCCeEEEE
Confidence 7889999999999999988887411 115666666432 122 24445544 556999977 8987765
Q ss_pred cCC
Q 032253 114 ADG 116 (144)
Q Consensus 114 ~~e 116 (144)
...
T Consensus 106 ~~G 108 (122)
T TIGR01295 106 RCG 108 (122)
T ss_pred EeC
Confidence 543
No 37
>PHA02125 thioredoxin-like protein
Probab=99.01 E-value=2.7e-09 Score=67.25 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=44.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
|++|+++|||.|+.++++|++.... +.++|.+.+. ++...++..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~~--~~~vd~~~~~-----~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEYT--YVDVDTDEGV-----ELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhhe--EEeeeCCCCH-----HHHHHcCCceeCeEE-CCEEE
Confidence 7899999999999999999876533 5777776653 467888999999987 66644
No 38
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.98 E-value=3.1e-09 Score=72.19 Aligned_cols=60 Identities=25% Similarity=0.402 Sum_probs=45.4
Q ss_pred hhhcCCcEEEE-ecCCChhHHHHHHHHHhcCCC-C--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 42 NSIFSNKIVIF-SKSYCPYCLRAKRIFADLNEQ-P--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 42 ~~~~~~~Vvvf-~~~~Cp~C~~~~~~L~~~~~~-~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
.+..+..+++| +++|||+|+.++++++++... + .+..+|.+.++ ++.+.++..++|++++
T Consensus 18 ~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-----~l~~~~~v~~vPt~~i 81 (113)
T cd02975 18 EMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-----EKAEKYGVERVPTTIF 81 (113)
T ss_pred HhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-----HHHHHcCCCcCCEEEE
Confidence 34455556555 789999999999999887521 1 26788888764 4778899999999988
No 39
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.94 E-value=7e-09 Score=70.73 Aligned_cols=60 Identities=13% Similarity=0.382 Sum_probs=48.1
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCC--CC--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNE--QP--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~--~~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
-|+.|+++|||.|+.+.+.|+++.. .. .+..+|+++++ ++.+.+|..++|++++ ||+.++
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-----~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-----DFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-----HHHHHcCCCCCCEEEEEECCEEEE
Confidence 3666999999999999999987741 11 26899999875 3778899999999977 888764
No 40
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.91 E-value=7.6e-09 Score=66.29 Aligned_cols=55 Identities=27% Similarity=0.671 Sum_probs=44.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCC-CCe-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNE-QPF-VVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~-~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g 108 (144)
++++|++++|+.|..++..|..... .++ +..+|++++++ +.+.||. .+|.+.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~-----l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE-----LFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH-----HHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH-----HHHHhcC-CCCEEEEcC
Confidence 4899999999999999999998752 333 88999998753 7778886 899999998
No 41
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.85 E-value=1.4e-08 Score=85.09 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=65.8
Q ss_pred HHHHHcCCCCCCccchhHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCC-CCe--EEEEeCCCCHHHHHHHHHHH
Q 032253 19 FFLLLGNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNE-QPF--VVELDLRDDGAQIQYILLDL 95 (144)
Q Consensus 19 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~-~~~--~~~id~~~~~~~~~~~l~~~ 95 (144)
+++..+.. ....++++.+.++.+.++..|.+|++++||||..+.+.++++.. +|. ...+|.... +++.+.
T Consensus 92 ~i~~~~~~--~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-----~~~~~~ 164 (517)
T PRK15317 92 ALLQVGGH--PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-----QDEVEA 164 (517)
T ss_pred HHHHhcCC--CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-----HhHHHh
Confidence 34443443 45668888999999989999999999999999999999988753 333 344454444 347778
Q ss_pred cCCCcccEEEECCEEE
Q 032253 96 VGRRTVPQIFVNGEHI 111 (144)
Q Consensus 96 ~g~~~vP~vfi~g~~i 111 (144)
++..+||++|+||+.+
T Consensus 165 ~~v~~VP~~~i~~~~~ 180 (517)
T PRK15317 165 RNIMAVPTVFLNGEEF 180 (517)
T ss_pred cCCcccCEEEECCcEE
Confidence 8999999999999865
No 42
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.85 E-value=1.8e-08 Score=63.71 Aligned_cols=57 Identities=21% Similarity=0.373 Sum_probs=37.2
Q ss_pred EEEEecCCChhHHHHHHHH----HhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE-ecc
Q 032253 49 IVIFSKSYCPYCLRAKRIF----ADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI-GGA 114 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L----~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i-gg~ 114 (144)
|.+|+ +|||.|+.+.+.+ ++++....++.+| +.++ ...+|..++|++++||+.+ .|.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~-----a~~~~v~~vPti~i~G~~~~~G~ 64 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNE-----ILEAGVTATPGVAVDGELVIMGK 64 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHH-----HHHcCCCcCCEEEECCEEEEEec
Confidence 55555 9999999996644 4455332244444 2222 2457999999999999755 443
No 43
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.84 E-value=2.3e-08 Score=74.99 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=59.4
Q ss_pred CccchhHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCCC-C--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 30 TEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ-P--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~-~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
...+.+..+.++...++..|++|+++|||+|+.++.+++++... + .+..+|.+.+++ +...+|..++|++++
T Consensus 118 ~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~-----~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 118 PGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD-----LAEKYGVMSVPKIVI 192 (215)
T ss_pred CCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH-----HHHHhCCccCCEEEE
Confidence 34456667777776667778889999999999999999887421 1 156788877643 567889999999999
Q ss_pred CCEE--EeccCC
Q 032253 107 NGEH--IGGADG 116 (144)
Q Consensus 107 ~g~~--igg~~e 116 (144)
+++. +-|...
T Consensus 193 ~~~~~~~~G~~~ 204 (215)
T TIGR02187 193 NKGVEEFVGAYP 204 (215)
T ss_pred ecCCEEEECCCC
Confidence 6432 434444
No 44
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.83 E-value=9e-09 Score=86.26 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=65.7
Q ss_pred HHHHHcCCCCCCccchhHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCC-CCe--EEEEeCCCCHHHHHHHHHHH
Q 032253 19 FFLLLGNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNE-QPF--VVELDLRDDGAQIQYILLDL 95 (144)
Q Consensus 19 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~-~~~--~~~id~~~~~~~~~~~l~~~ 95 (144)
+++..+.. .+..++++.+.++.+-++.+|.+|++++||||..+...++++.. +|. ...+|.... +++.+.
T Consensus 93 ~i~~~~~~--~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~-----~~~~~~ 165 (515)
T TIGR03140 93 AILQVGGH--GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF-----QDEVEA 165 (515)
T ss_pred HHHHhcCC--CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC-----HHHHHh
Confidence 44444443 35667889999999888999999999999999999999988853 343 233344433 346788
Q ss_pred cCCCcccEEEECCEEEe
Q 032253 96 VGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 96 ~g~~~vP~vfi~g~~ig 112 (144)
++..+||++|+||+.++
T Consensus 166 ~~v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 166 LGIQGVPAVFLNGEEFH 182 (515)
T ss_pred cCCcccCEEEECCcEEE
Confidence 89999999999998653
No 45
>PHA02278 thioredoxin-like protein
Probab=98.81 E-value=7.3e-08 Score=64.57 Aligned_cols=63 Identities=17% Similarity=0.357 Sum_probs=47.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC----CeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~----~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
++.|+++||+.|+.+.+.++++... ..+..+|++.++.. .+++.+.++..++|++++ ||+.++
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d-~~~l~~~~~I~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD-REKAVKLFDIMSTPVLIGYKDGQLVK 86 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc-cHHHHHHCCCccccEEEEEECCEEEE
Confidence 6678999999999999988876311 12678888865311 234778899999999977 888663
No 46
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.80 E-value=2.5e-08 Score=84.30 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=67.1
Q ss_pred HHHHHcCCCCCCccchhHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcC-CCCe--EEEEeCCCCHHHHHHHHHHH
Q 032253 19 FFLLLGNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-EQPF--VVELDLRDDGAQIQYILLDL 95 (144)
Q Consensus 19 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~-~~~~--~~~id~~~~~~~~~~~l~~~ 95 (144)
+++-.+. ..+..++++.+.++.+-++.+|.+|..++||||.++.+.++++. .+|. ...+|....+ ++.+.
T Consensus 452 ~i~~~~~--~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~-----~~~~~ 524 (555)
T TIGR03143 452 ALYNAAG--PGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP-----DLKDE 524 (555)
T ss_pred HHHHhcC--CCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH-----HHHHh
Confidence 4444443 34566888999999988888999999999999999999888764 2221 4556666553 47778
Q ss_pred cCCCcccEEEECCEEE--eccC
Q 032253 96 VGRRTVPQIFVNGEHI--GGAD 115 (144)
Q Consensus 96 ~g~~~vP~vfi~g~~i--gg~~ 115 (144)
|++.+||+++|||+.+ |...
T Consensus 525 ~~v~~vP~~~i~~~~~~~G~~~ 546 (555)
T TIGR03143 525 YGIMSVPAIVVDDQQVYFGKKT 546 (555)
T ss_pred CCceecCEEEECCEEEEeeCCC
Confidence 8999999999999743 5443
No 47
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.76 E-value=7.7e-08 Score=64.06 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=47.3
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC--CCC-eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLN--EQP-FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~--~~~-~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
.-++.|+.+||+.|+...+.|+++. ... .+..+|.+.++. ..++.+.++..++|++++ ||+.++
T Consensus 17 ~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~--~~~l~~~~~V~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 17 LVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDS--TMELCRREKIIEVPHFLFYKDGEKIH 85 (103)
T ss_pred EEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChH--HHHHHHHcCCCcCCEEEEEeCCeEEE
Confidence 3366799999999999998887763 111 268888877642 245778889999999866 887653
No 48
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.76 E-value=8.1e-08 Score=60.64 Aligned_cols=65 Identities=14% Similarity=0.282 Sum_probs=49.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC--CEEEeccCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN--GEHIGGADG 116 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~--g~~igg~~e 116 (144)
+.+|+.++||+|++++.+|.+.++. |..+++.... ...+++...++..++|++..+ |..+.+.+.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~--y~~~~v~~~~-~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~ 68 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELD--VILYPCPKGS-PKRDKFLEKGGKVQVPYLVDPNTGVQMFESAD 68 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCc--EEEEECCCCh-HHHHHHHHhCCCCcccEEEeCCCCeEEEcHHH
Confidence 6799999999999999999999965 3556665543 224567788888999999873 555555554
No 49
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.71 E-value=1.4e-07 Score=61.99 Aligned_cols=59 Identities=20% Similarity=0.407 Sum_probs=45.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
+++|+.+|||.|+.+.+.++++. ....+..+|.+.++ ++...++..++|++++ +|+.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-----~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-----EIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-----HHHHHCCCeeccEEEEEECCeEEE
Confidence 66788999999999998887742 11126888988764 3667889999999977 888664
No 50
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.68 E-value=9.9e-08 Score=57.40 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=49.7
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
.+|+.++||+|.+++.+|+..++......++....... ++...++..++|.+..+|..++....
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~ 65 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLA 65 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHH
Confidence 58999999999999999999996533555555443221 46778889999999999998877665
No 51
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.5e-08 Score=68.49 Aligned_cols=72 Identities=28% Similarity=0.431 Sum_probs=53.1
Q ss_pred hHHHHHHhhhcC-Cc-EEEEecCCChhHHHHHHHHHhcCCC---Ce-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--
Q 032253 35 SVSAFVQNSIFS-NK-IVIFSKSYCPYCLRAKRIFADLNEQ---PF-VVELDLRDDGAQIQYILLDLVGRRTVPQIFV-- 106 (144)
Q Consensus 35 ~~~~~~~~~~~~-~~-Vvvf~~~~Cp~C~~~~~~L~~~~~~---~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-- 106 (144)
+..++-...+++ .+ +|.|+++||.-|+...+.|+++.-+ .+ ++.+|.+++++ +...|+...+|++++
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-----la~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-----LAEDYEISAVPTVLVFK 123 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-----hHhhcceeeeeEEEEEE
Confidence 334444444433 33 5669999999999999999887411 12 78889998764 888999999999977
Q ss_pred CCEEE
Q 032253 107 NGEHI 111 (144)
Q Consensus 107 ~g~~i 111 (144)
||+.+
T Consensus 124 nGe~~ 128 (150)
T KOG0910|consen 124 NGEKV 128 (150)
T ss_pred CCEEe
Confidence 88755
No 52
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.67 E-value=2e-07 Score=58.53 Aligned_cols=63 Identities=14% Similarity=0.343 Sum_probs=45.7
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC----CEEEeccCC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN----GEHIGGADG 116 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~----g~~igg~~e 116 (144)
++.+|+.+.||+|++++.+|...++. |..++++... ..++ ...+...+|+++++ |..+..-..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~--y~~~~~~~~~---~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~ 67 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIP--YEVVEVNPVS---RKEI-KWSSYKKVPILRVESGGDGQQLVDSSV 67 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCc--eEEEECCchh---HHHH-HHhCCCccCEEEECCCCCccEEEcHHH
Confidence 47899999999999999999999965 3455554321 2234 34678899999987 555554444
No 53
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.66 E-value=1.8e-07 Score=66.93 Aligned_cols=59 Identities=20% Similarity=0.399 Sum_probs=44.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcC--C--C-CeEEEEeCCCCHHHHHHHHHHHcCCCc------ccEEEE--CCEEEe
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN--E--Q-PFVVELDLRDDGAQIQYILLDLVGRRT------VPQIFV--NGEHIG 112 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~--~--~-~~~~~id~~~~~~~~~~~l~~~~g~~~------vP~vfi--~g~~ig 112 (144)
++.|+++|||.|+...+.+.++. . . ..+..+|.+++++ +.+.++..+ +|++++ +|+.++
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-----la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-----VAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-----HHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 77899999999999998887663 1 1 1278899988753 455666666 999866 888763
No 54
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.64 E-value=7.7e-07 Score=58.02 Aligned_cols=60 Identities=27% Similarity=0.515 Sum_probs=46.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC----CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
-++.|+++|||.|+..++.+.++. ....+..+|.+.+. .+.+.++...+|++++ +|+.+.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK-----ELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH-----HHHHHTTCSSSSEEEEEETTEEEE
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccc-----hhhhccCCCCCCEEEEEECCcEEE
Confidence 377899999999999998887763 12337899998764 3678889999999977 777653
No 55
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.64 E-value=2.2e-07 Score=57.46 Aligned_cols=62 Identities=21% Similarity=0.447 Sum_probs=46.1
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC-CEEEeccCC
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGGADG 116 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-g~~igg~~e 116 (144)
.+|+.++||+|++++.+|...++. |..+.++..... . ..+..+...+|+++.+ |..+++...
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~--~~~~~~~~~~~~--~-~~~~~~~~~vP~L~~~~~~~l~es~a 64 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIP--VEQIILQNDDEA--T-PIRMIGAKQVPILEKDDGSFMAESLD 64 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCC--eEEEECCCCchH--H-HHHhcCCCccCEEEeCCCeEeehHHH
Confidence 478999999999999999999965 344444433221 2 2345677899999987 888888777
No 56
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.63 E-value=3.5e-07 Score=59.50 Aligned_cols=60 Identities=13% Similarity=0.294 Sum_probs=45.5
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC--C-CCe-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN--E-QPF-VVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~--~-~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
-++.|+++||+.|+...+.+.++. . ... +..+|.+.++ .+.+.++..++|++++ +|+.+.
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-----QIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-----HHHHHcCCCCCCEEEEEeCCEEee
Confidence 377799999999999988887653 1 112 6788888764 3677889999999976 777553
No 57
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.63 E-value=2.2e-07 Score=61.60 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=43.5
Q ss_pred HhhhcCCc--EEEEecCCChhHHHHHHHH-------HhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 41 QNSIFSNK--IVIFSKSYCPYCLRAKRIF-------ADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 41 ~~~~~~~~--Vvvf~~~~Cp~C~~~~~~L-------~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
.++++.++ ++.|+++|||+|+.....+ ..++....+..+|.+.+... ..++.+.++..++|++++
T Consensus 5 ~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 5 AQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPE-ITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHH-HHHHHHHcCCCCCCEEEE
Confidence 33444444 6679999999999988654 12221222678888765333 346778889999999876
No 58
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.62 E-value=2.2e-07 Score=61.07 Aligned_cols=62 Identities=16% Similarity=0.370 Sum_probs=46.4
Q ss_pred hhcCCcEEEEecCCChhHHHHHHHHHhcCC-----CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCE
Q 032253 43 SIFSNKIVIFSKSYCPYCLRAKRIFADLNE-----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGE 109 (144)
Q Consensus 43 ~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~-----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~ 109 (144)
.++...++.|+++|||.|+...+.++++.. ...+..+|.+.++. +.+.++..++|++++ +|+
T Consensus 14 ~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-----~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 14 VLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG-----LSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred HhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh-----HHHHcCCcccCEEEEeCCCC
Confidence 344556889999999999999998877631 11267888876643 567789999999987 665
No 59
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.62 E-value=5.6e-08 Score=65.88 Aligned_cols=49 Identities=12% Similarity=0.312 Sum_probs=36.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRT 100 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~ 100 (144)
|.+|+.++||+|++++++|++.++. |..+|+..++.. ++++.+..+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~~~~~~-~~el~~~~~~~~ 49 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVD--YTAIDIVEEPPS-KEELKKWLEKSG 49 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCc--eEEecccCCccc-HHHHHHHHHHcC
Confidence 5799999999999999999999976 578887666543 445555444333
No 60
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.61 E-value=3.4e-07 Score=62.11 Aligned_cols=59 Identities=12% Similarity=0.299 Sum_probs=46.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC---CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
++.|+.+|||.|+.+...|.++.. ...++++|.+..+ ++.+.++..++|++.+ +|+.++
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~-----~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP-----FLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH-----HHHHHCCCccCCEEEEEECCEEEE
Confidence 566888999999999998877631 1127899998875 3778889999999966 888664
No 61
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.60 E-value=7.1e-07 Score=59.19 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=41.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcC--C--CC-eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN--E--QP-FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~--~--~~-~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
++.|+++|||.|+...+.+..+. . .. .+..+|.+ ++ .+.+.++.+++|++++ +|+.+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI-----DTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH-----HHHHHcCCCcCcEEEEEECCEEE
Confidence 66799999999999988886652 1 11 25677776 32 2567889999998866 78754
No 62
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.60 E-value=4.8e-07 Score=61.90 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=44.7
Q ss_pred HHHHHhhhcCC-c--EEEEecCCChhHHHHHHHHH-------hcCCCCeEEEEeCCCCHHH--------HHHHHHHHcCC
Q 032253 37 SAFVQNSIFSN-K--IVIFSKSYCPYCLRAKRIFA-------DLNEQPFVVELDLRDDGAQ--------IQYILLDLVGR 98 (144)
Q Consensus 37 ~~~~~~~~~~~-~--Vvvf~~~~Cp~C~~~~~~L~-------~~~~~~~~~~id~~~~~~~--------~~~~l~~~~g~ 98 (144)
.+.+.++.+.+ + ++.|+++|||+|++..+.+. .+.....++.+|++.+... -...+...++.
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 34455555555 3 66799999999999886552 1221112577777654210 02457788899
Q ss_pred CcccEEEE
Q 032253 99 RTVPQIFV 106 (144)
Q Consensus 99 ~~vP~vfi 106 (144)
.++|++++
T Consensus 83 ~~~Pt~~~ 90 (125)
T cd02951 83 RFTPTVIF 90 (125)
T ss_pred ccccEEEE
Confidence 99999766
No 63
>PTZ00051 thioredoxin; Provisional
Probab=98.59 E-value=3.7e-07 Score=59.55 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=48.7
Q ss_pred HHHhhhcCCc--EEEEecCCChhHHHHHHHHHhcCC---CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 39 FVQNSIFSNK--IVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 39 ~~~~~~~~~~--Vvvf~~~~Cp~C~~~~~~L~~~~~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
..+++++.++ ++.|+.+||+.|+.....+.++.. ...+..+|.+.+. .+.+.++..++|++++ +|+.+
T Consensus 10 ~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS-----EVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH-----HHHHHCCCceeeEEEEEeCCeEE
Confidence 3444444444 667999999999999888877531 1126778877643 3667789999999866 78766
Q ss_pred ec
Q 032253 112 GG 113 (144)
Q Consensus 112 gg 113 (144)
+.
T Consensus 85 ~~ 86 (98)
T PTZ00051 85 DT 86 (98)
T ss_pred EE
Confidence 43
No 64
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.58 E-value=3.2e-07 Score=62.23 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=50.7
Q ss_pred CCcEEEEecCC--ChhHHHHHHHHHhcCCC--C--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEeccC
Q 032253 46 SNKIVIFSKSY--CPYCLRAKRIFADLNEQ--P--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGAD 115 (144)
Q Consensus 46 ~~~Vvvf~~~~--Cp~C~~~~~~L~~~~~~--~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~igg~~ 115 (144)
...|+.|+.+| ||.|+.+...|.++... . .+..+|++.++ ++...++.+++|++++ ||+.++.+.
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-----~la~~f~V~sIPTli~fkdGk~v~~~~ 100 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-----ALAARFGVLRTPALLFFRDGRYVGVLA 100 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-----HHHHHcCCCcCCEEEEEECCEEEEEEe
Confidence 44577899996 99999999999887411 1 26788998875 4788999999999966 999886543
No 65
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.2e-07 Score=64.81 Aligned_cols=103 Identities=17% Similarity=0.295 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHcCCCC-CCccchhHHHHHHhhhcCCc--EEEEecCCChhHHHHHHHHHhcC------CCCe-EEE
Q 032253 9 RFLVEAVGLLFFLLLGNAPT-ATEADHSVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFADLN------EQPF-VVE 78 (144)
Q Consensus 9 ~~~~~~~~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~~~~~--Vvvf~~~~Cp~C~~~~~~L~~~~------~~~~-~~~ 78 (144)
|.++..++++.+.+..+... ......+..+..+.+....+ ++||.+++|+||.+.++-+.... ..++ +++
T Consensus 3 Rvl~i~Lliis~fl~a~~s~~ek~s~~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~ 82 (182)
T COG2143 3 RVLLIVLLIISLFLSACKSNNEKRSNIDVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYY 82 (182)
T ss_pred chHHHHHHHHHHHHHHHhCCchhhhhhhhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEE
Confidence 44555555544444444332 33334456677777665555 88999999999998876543221 1112 444
Q ss_pred EeCCCCHH-----------HHHHHHHHHcCCCcccEEEE---CCEEE
Q 032253 79 LDLRDDGA-----------QIQYILLDLVGRRTVPQIFV---NGEHI 111 (144)
Q Consensus 79 id~~~~~~-----------~~~~~l~~~~g~~~vP~vfi---~g~~i 111 (144)
+++....+ .=.++|.+.++.+++|+++. .|+-|
T Consensus 83 l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~I 129 (182)
T COG2143 83 LNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKTGKTI 129 (182)
T ss_pred EEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCCCCEE
Confidence 54432111 01458999999999999977 45545
No 66
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.54 E-value=5.7e-07 Score=58.49 Aligned_cols=58 Identities=14% Similarity=0.374 Sum_probs=43.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC---C-eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQ---P-FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~---~-~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
++.|+++||+.|+++.+.|.++... . .+..+|.+..+ ++...++..++|++++ +|+.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-----~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-----EISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-----HHHHhcCCccccEEEEEECCEEE
Confidence 6779999999999999988775311 1 26777776653 3667789999998866 78755
No 67
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.53 E-value=1.2e-06 Score=59.11 Aligned_cols=60 Identities=15% Similarity=0.319 Sum_probs=43.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC-----CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~-----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
-++.|+++|||.|+...+.+.++. ....+..+|.+.++ .+...+|..++|++++ +|+.++
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-----~l~~~~~V~~~Pt~~i~~~g~~~~ 93 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-----RLARKLGAHSVPAIVGIINGQVTF 93 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-----HHHHHcCCccCCEEEEEECCEEEE
Confidence 367799999999998887776552 11126788887764 3567789999999975 887653
No 68
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.52 E-value=5.6e-08 Score=61.43 Aligned_cols=57 Identities=25% Similarity=0.438 Sum_probs=37.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC--CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN--EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~--~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
+|.+ ..++||+|.++.+.+++.- ....+.-+|. .+. +++ ..+|..++|+++|||+.+
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~----~~~-~~ygv~~vPalvIng~~~ 60 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI-EDF----EEI-EKYGVMSVPALVINGKVV 60 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET-TTH----HHH-HHTT-SSSSEEEETTEEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCH----HHH-HHcCCCCCCEEEECCEEE
Confidence 4666 4677999998888776652 1111344454 443 235 788999999999999954
No 69
>PRK10996 thioredoxin 2; Provisional
Probab=98.52 E-value=2.6e-06 Score=59.78 Aligned_cols=58 Identities=22% Similarity=0.445 Sum_probs=44.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
++.|+++|||.|+.....|.++. ....+..+|.+.++ .+.+.++..++|++++ +|+.+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-----~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-----ELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-----HHHHhcCCCccCEEEEEECCEEE
Confidence 77799999999999888776652 12226788888764 3677889999999977 88865
No 70
>PRK09381 trxA thioredoxin; Provisional
Probab=98.50 E-value=1.9e-06 Score=57.44 Aligned_cols=62 Identities=21% Similarity=0.387 Sum_probs=46.2
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC----CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEecc
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGA 114 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~igg~ 114 (144)
-++.|+++|||.|+.+.+.++++. ....+..+|.+.++. +.+.++..++|++++ +|+.++.+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-----~~~~~~v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-----TAPKYGIRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-----HHHhCCCCcCCEEEEEeCCeEEEEe
Confidence 367799999999999988887642 122268888887643 556789999999977 88877543
No 71
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.49 E-value=2.5e-06 Score=60.13 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=42.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE---CCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV---NGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi---~g~~i 111 (144)
|+.|+.+||+.|+.....+.++. ....++.+|++.+.. ..+.+.++..++|++++ +|+.+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~---~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW---LPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc---HHHHHHcCCCCCCEEEEECCCCCEE
Confidence 66799999999999988887652 111267777765421 24567789999999866 57755
No 72
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.49 E-value=2.1e-06 Score=65.08 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=44.4
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC--C--CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN--E--QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~--~--~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
-++.|+++|||+|+...+.++++. . ...+..+|.+.++ .+.+.++..++|++++ +|+.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-----~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-----NLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-----HHHHHcCCCcCCEEEEEECCEEE
Confidence 377899999999999999887763 1 1125667776653 4677889999999976 78766
No 73
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.48 E-value=6.7e-07 Score=59.73 Aligned_cols=71 Identities=21% Similarity=0.381 Sum_probs=43.0
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhc---C--C--CCeEEEEeCCCCHH---------------HHHHHHHHHcCCCcccE
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADL---N--E--QPFVVELDLRDDGA---------------QIQYILLDLVGRRTVPQ 103 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~---~--~--~~~~~~id~~~~~~---------------~~~~~l~~~~g~~~vP~ 103 (144)
...+++|+.+|||+|++..+.+.+. . . ...++.++++.+.. ....++.+.+|..++|+
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt 85 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPT 85 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCE
Confidence 3448899999999999997766532 1 1 12256667665431 12356888899999999
Q ss_pred EEE---CCE---EEeccCC
Q 032253 104 IFV---NGE---HIGGADG 116 (144)
Q Consensus 104 vfi---~g~---~igg~~e 116 (144)
+++ +|+ .+.|+-.
T Consensus 86 ~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 86 IVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp EEECTTTSCEEEEEESS--
T ss_pred EEEEcCCCCEEEEecCCCC
Confidence 988 377 3456655
No 74
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.47 E-value=1.9e-07 Score=62.39 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=34.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR 98 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~ 98 (144)
|.+|+.++||+|++++++|++.++. |..+|+.+++.. .+++.+..+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~~~~~~-~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIE--YEFIDYLKEPPT-KEELKELLAK 47 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCC--cEEEeeccCCCC-HHHHHHHHHh
Confidence 5799999999999999999999976 467777554332 3344444443
No 75
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.45 E-value=1.5e-06 Score=59.21 Aligned_cols=58 Identities=16% Similarity=0.313 Sum_probs=46.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcC--CCC--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN--EQP--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~--~~~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
|+-|+++|||.|+.+-+.|.++. +.. .++.+|+++.++ +.+.++....|++.+ ||+++
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-----va~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-----YTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-----HHHhcCceeCcEEEEEECCcEE
Confidence 55599999999999999998875 222 278999998754 778889988998854 88877
No 76
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.45 E-value=1.5e-06 Score=53.79 Aligned_cols=60 Identities=23% Similarity=0.402 Sum_probs=46.1
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC-CEEEec
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGG 113 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-g~~igg 113 (144)
++|+.++||+|.+++.+|.+.++....+++|..... +++.+.++...+|++..+ |..+..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~----~~~~~~np~~~vP~L~~~~g~~l~e 62 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKP----AEMLAASPKGTVPVLVLGNGTVIEE 62 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCC----HHHHHHCCCCCCCEEEECCCcEEec
Confidence 689999999999999999999965335566664332 346677888999999985 766543
No 77
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.44 E-value=2.6e-06 Score=53.66 Aligned_cols=60 Identities=23% Similarity=0.507 Sum_probs=45.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCC---CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
-+++|+++||++|+.+.+.+++... ...+..+|.+.+.. +...++..++|++++ +|+.++
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE-----LAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh-----HHHhcCcccccEEEEEECCEEEE
Confidence 3788999999999999998887531 11267888887543 556778999999877 777443
No 78
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.43 E-value=2.9e-06 Score=58.69 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=46.0
Q ss_pred HHHhhhcCCc--EEEEecCCChhHHHHHH-HHHh------cCCCCe-EEEEeCCCCHHHH---HHHHHHHcCCCcccEEE
Q 032253 39 FVQNSIFSNK--IVIFSKSYCPYCLRAKR-IFAD------LNEQPF-VVELDLRDDGAQI---QYILLDLVGRRTVPQIF 105 (144)
Q Consensus 39 ~~~~~~~~~~--Vvvf~~~~Cp~C~~~~~-~L~~------~~~~~~-~~~id~~~~~~~~---~~~l~~~~g~~~vP~vf 105 (144)
+++++.+.++ ++.|+++||++|+.+.+ .+.. +. ..+ .+.+|.++.++.. .+.....+|..++|+++
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEE
Confidence 3455555555 44588999999998864 3332 22 233 6788887664321 22233356889999998
Q ss_pred E---CCEEE
Q 032253 106 V---NGEHI 111 (144)
Q Consensus 106 i---~g~~i 111 (144)
+ +|+.+
T Consensus 86 fl~~~G~~~ 94 (124)
T cd02955 86 FLTPDLKPF 94 (124)
T ss_pred EECCCCCEE
Confidence 7 78877
No 79
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.43 E-value=9e-07 Score=59.78 Aligned_cols=62 Identities=23% Similarity=0.418 Sum_probs=47.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcC--C-CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEeccCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN--E-QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGADG 116 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~--~-~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~igg~~e 116 (144)
++.|+.+||+.|+.+.+.++++. . ...+..+|.+.+ ++.+.++..++|++++ +|+.++.+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~------~l~~~~~i~~~Pt~~~f~~G~~v~~~~G 94 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA------FLVNYLDIKVLPTLLVYKNGELIDNIVG 94 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh------HHHHhcCCCcCCEEEEEECCEEEEEEec
Confidence 56799999999999999887763 1 112678887754 4778889999999966 8998765544
No 80
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.40 E-value=2.2e-06 Score=55.57 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=49.9
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC-CEEEeccCC
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGGADG 116 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-g~~igg~~e 116 (144)
...+.+|+.+.||+|++++.+|...++......+|.... .+++...++...+|.+.++ |..+.....
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~----~~~~~~~np~~~vPvL~~~~g~~l~eS~a 83 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDK----PDWFLEKNPQGKVPALEIDEGKVVYESLI 83 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCC----cHHHHhhCCCCCcCEEEECCCCEEECHHH
Confidence 456999999999999999999999996533455554432 2346677888899999997 766554443
No 81
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.39 E-value=9.6e-07 Score=61.59 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=30.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHH
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGA 86 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~ 86 (144)
|.+|+.++||+|++++++|++.++. |..+|+..++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~--~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIP--FTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC--cEEeeccCChh
Confidence 7899999999999999999999976 46777765543
No 82
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.39 E-value=9.1e-07 Score=58.25 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=43.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcC--C--CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN--E--QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~--~--~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
++.|+++|||.|+.....+.++. . ...+..+|.+.++. +.+.++.+++|++++ +|+.+
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-----~~~~~~v~~~Pt~~~~~~g~~~ 85 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-----LCRSQGVNSYPSLYVFPSGMNP 85 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-----HHHHcCCCccCEEEEEcCCCCc
Confidence 67799999999999998887763 1 11267888887643 566789999999966 66643
No 83
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.39 E-value=1.3e-06 Score=56.92 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=40.2
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC----CC--CeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLN----EQ--PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~----~~--~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
.-+++|+.+||+.|+.....+.+.. .. ..+..+|.+.++ .+.+.++..++|++++
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-----DLASRFGVSGFPTIKF 75 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-----HHHHhCCCCcCCEEEE
Confidence 3488899999999998877776542 11 126777777653 3667789999999966
No 84
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.7e-06 Score=58.22 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=45.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCC---eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQP---FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~---~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
|+-|+++|||-|+.+.+.+.++...+ .|+.+|+++. .++.+..+...+|++.+ +|+-++
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~-----~~~~~~~~V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDEL-----EEVAKEFNVKAMPTFVFYKGGEEVD 88 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccC-----HhHHHhcCceEeeEEEEEECCEEEE
Confidence 45589999999999999998885222 2788999872 24677889999999966 777553
No 85
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.38 E-value=1.8e-06 Score=58.74 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=42.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC----CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNE----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGE 109 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~ 109 (144)
++.|+.+||++|+.+...++++.. ...+..+|.+.+.. ...+.++..++|++.+ +|+
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~----l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG----KCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH----HHHHhcCCcccCEEEEEECCc
Confidence 778999999999999998887741 11268888887643 2335789999999965 665
No 86
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.38 E-value=8.1e-06 Score=52.84 Aligned_cols=61 Identities=21% Similarity=0.433 Sum_probs=45.1
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC--C--CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLN--E--QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~--~--~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
.-++.|+.+||++|+.+...+.++. . ...+..+|.+.++ .+.+.+|..++|++++ +|+.+.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-----DIAAKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-----HHHHHcCCCcCCEEEEEeCCcEee
Confidence 3477788999999999988777652 1 1237888888764 3566789999999877 776553
No 87
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.38 E-value=2.4e-06 Score=52.71 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=45.9
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
.+|+.++||+|++++.+|...|+.....++|..... +++.+.+...++|++..+|..+.....
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~vP~l~~~~~~l~es~a 64 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPP----EDLAELNPYGTVPTLVDRDLVLYESRI 64 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCC----HHHHhhCCCCCCCEEEECCEEEEcHHH
Confidence 689999999999999999999965334445544332 346667788899999888866554443
No 88
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.37 E-value=1.3e-06 Score=53.75 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=45.2
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE-CCEEEe
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIG 112 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~g~~ig 112 (144)
.+|+.++||+|++++.+|...++....+.+|...... ..+++.+.+....+|++.+ ||..+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~~l~ 64 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQ-RSPEFLAKNPAGTVPVLELDDGTVIT 64 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCcc-CCHHHHhhCCCCCCCEEEeCCCCEEe
Confidence 5899999999999999999999653355666543211 1345677888889999997 555443
No 89
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.35 E-value=2.8e-06 Score=56.62 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=42.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcC------C----CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN------E----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGE 109 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~------~----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~ 109 (144)
++.|+++||++|+...+.++++. . ...+..+|.+.++ .+.+.+|..++|++++ +|+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-----~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-----DIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-----HHHHhCCCCcCCEEEEEeCCc
Confidence 67899999999999998886542 0 1126788888764 3677889999999976 666
No 90
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.35 E-value=1.7e-06 Score=57.31 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=40.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCC--CC-eEEEEeCC-CCHHHHHHHHHHHcCCCcccEEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNE--QP-FVVELDLR-DDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~--~~-~~~~id~~-~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
-++.|+++|||.|+.....++++.. .. .+..+|.+ .++ .+.+.++..++|++++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~-----~l~~~~~V~~~PT~~l 78 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP-----SLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH-----HHHHhcCCeecCEEEE
Confidence 3777999999999999988877641 11 15677776 433 4678889999999976
No 91
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.35 E-value=1.7e-06 Score=59.06 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=46.3
Q ss_pred hHHHHHHhhhcCCc--EEEEecCCChhHHHHHHHHHhcC----CCCeEEEEeCCCCHHHHHHHHHHHcCCC--cccEEEE
Q 032253 35 SVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRR--TVPQIFV 106 (144)
Q Consensus 35 ~~~~~~~~~~~~~~--Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~--~vP~vfi 106 (144)
+..++++.+...++ ++.|+++||+.|+...+.+.+.. ....++.+|++.+.+. ..+.++.. .+|++++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~----~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP----KDEEFSPDGGYIPRILF 82 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc----hhhhcccCCCccceEEE
Confidence 45666666665555 55689999999999988777742 1112566666655322 22344444 4999977
Q ss_pred ---CCEEEe
Q 032253 107 ---NGEHIG 112 (144)
Q Consensus 107 ---~g~~ig 112 (144)
+|+.++
T Consensus 83 ~~~~Gk~~~ 91 (117)
T cd02959 83 LDPSGDVHP 91 (117)
T ss_pred ECCCCCCch
Confidence 666544
No 92
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.33 E-value=2.7e-06 Score=52.69 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=47.4
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEec
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGG 113 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg 113 (144)
.+|+.++||+|++++.+|...++......+|..... +..+++...+....+|.+..+|..+..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~e 64 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGE-HLKPEFLKLNPQHTVPTLVDNGFVLWE 64 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCC-cCCHHHHhhCcCCCCCEEEECCEEEEc
Confidence 589999999999999999999965335556654432 224567778888899999888865543
No 93
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.33 E-value=5.1e-06 Score=54.79 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=42.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCC----CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNE----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NG 108 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g 108 (144)
-++.|+++|||.|+.+.+.+.++.. ...+..+|.+.++ .+.+.++.+++|++++ +|
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE-----SLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH-----HHHHHcCCCcccEEEEEcCC
Confidence 3677999999999999888876631 1126788888753 3667789999999976 55
No 94
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.33 E-value=3.3e-05 Score=56.60 Aligned_cols=61 Identities=25% Similarity=0.417 Sum_probs=40.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCC-eEEEEeCCCCHHHHHHHHH------------------HHcCCCcccEEEE---
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQP-FVVELDLRDDGAQIQYILL------------------DLVGRRTVPQIFV--- 106 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~-~~~~id~~~~~~~~~~~l~------------------~~~g~~~vP~vfi--- 106 (144)
++.|+.+|||.|++....|.++.... .++-++.+++.+...+.+. ..+|...+|+.|+
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~ 151 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDG 151 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECC
Confidence 66799999999999888887764212 2667776665554443332 2457788996554
Q ss_pred CCE
Q 032253 107 NGE 109 (144)
Q Consensus 107 ~g~ 109 (144)
+|+
T Consensus 152 ~G~ 154 (185)
T PRK15412 152 NGI 154 (185)
T ss_pred Cce
Confidence 565
No 95
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.4e-06 Score=67.95 Aligned_cols=62 Identities=16% Similarity=0.402 Sum_probs=48.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC----CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEE--EECCEEEeccC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNE----QPFVVELDLRDDGAQIQYILLDLVGRRTVPQI--FVNGEHIGGAD 115 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~----~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi~g~~igg~~ 115 (144)
+|.|+.|||+.|+...+.|.++-. ......+|++.++. +....|.+++|+| |.+|+.|.||.
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-----vAaqfgiqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-----VAAQFGVQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-----HHHHhCcCcCCeEEEeeCCcCccccC
Confidence 556899999999999999988731 11267888888753 7788899999999 45999886654
No 96
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4e-06 Score=52.55 Aligned_cols=64 Identities=22% Similarity=0.382 Sum_probs=49.7
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHc-----------CCCcccEEEE-CCEEEec
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLV-----------GRRTVPQIFV-NGEHIGG 113 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~-----------g~~~vP~vfi-~g~~igg 113 (144)
+.++|+...||+|..+.+.|++++++ |..+|+..+...+.+.++-+- |.-++|.+.. ||+.|-|
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~--yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVD--YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCC--ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 34899999999999999999999977 578888777666665554432 5668999988 5666655
No 97
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.28 E-value=7.1e-06 Score=58.01 Aligned_cols=56 Identities=11% Similarity=0.275 Sum_probs=42.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcC--CCC--eEEEEeCCCCHHHHHHHHHHHcCCCcc-cEE-EE-CCE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN--EQP--FVVELDLRDDGAQIQYILLDLVGRRTV-PQI-FV-NGE 109 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~--~~~--~~~~id~~~~~~~~~~~l~~~~g~~~v-P~v-fi-~g~ 109 (144)
|+-|+++|||.|+.+.+.|.++. +.. .++.+|+++.++ +...++.++. |++ |+ +|+
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-----la~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-----FNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-----HHHHcCccCCCcEEEEEECCe
Confidence 56699999999999999998875 222 268999998753 7788898855 555 33 666
No 98
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.27 E-value=6.3e-06 Score=55.36 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=28.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~ 84 (144)
|.+|+.|+|+.|++++++|++.++. |..+|+.++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~--~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVA--YTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCC--eEEEecccC
Confidence 5799999999999999999999976 456665443
No 99
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.27 E-value=4.5e-06 Score=62.55 Aligned_cols=66 Identities=21% Similarity=0.387 Sum_probs=45.3
Q ss_pred hhcCCcEEEEec---CCChhHHHHHHHHHhcCCC-C--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 43 SIFSNKIVIFSK---SYCPYCLRAKRIFADLNEQ-P--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 43 ~~~~~~Vvvf~~---~~Cp~C~~~~~~L~~~~~~-~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
+.....+++|+. +|||.|+.+.++++++... + .+..++++.+. ...+.+.++..++|++.+ ||+.+
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~---~~~l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE---DKEEAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc---cHHHHHHcCCCccCEEEEEeCCeee
Confidence 344555888988 9999999999999887411 1 13344554321 124788899999999977 65544
No 100
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.26 E-value=2.8e-06 Score=57.93 Aligned_cols=37 Identities=22% Similarity=0.496 Sum_probs=31.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHH
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQ 87 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~ 87 (144)
|.+|+.++||+|++++++|++.++. |..+|+.+++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~~~~~~ 37 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIE--YQFIDIGEDGPT 37 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCc--eEEEecCCChhh
Confidence 4699999999999999999999976 577887766544
No 101
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.25 E-value=2.3e-06 Score=56.73 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=38.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC-------CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNE-------QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~-------~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
++.|+++|||.|+...+.++++.. ...+..+|.+..+ .+.+.++..++|++++
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-----SIASEFGVRGYPTIKL 78 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-----hHHhhcCCccccEEEE
Confidence 667899999999988887766421 1114566776543 3667889999999966
No 102
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.25 E-value=2.5e-06 Score=58.04 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=34.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLV 96 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~ 96 (144)
+.+|+.++||+|++++++|++.++. |..+|+..++.. ++++.+..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~--~~~idi~~~~~~-~~el~~~~ 46 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIP--FEERNLFKQPLT-KEELKEIL 46 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCc--eEEEecCCCcch-HHHHHHHH
Confidence 6799999999999999999999976 577777665433 33444443
No 103
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.23 E-value=4.8e-06 Score=52.13 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=49.2
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+|+.++||+|++++-+|...++...+..++.... .+.+.+.++...+|++..||..+.+...
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~----~~~~~~~~p~~~vPvL~~~g~~l~dS~~ 62 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK----RPEFLKLNPKGKVPVLVDDGEVLTDSAA 62 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST----SHHHHHHSTTSBSSEEEETTEEEESHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc----hhHHHhhcccccceEEEECCEEEeCHHH
Confidence 5889999999999999999996433556665443 3457788899999999999998876665
No 104
>PTZ00102 disulphide isomerase; Provisional
Probab=98.23 E-value=1.8e-05 Score=65.25 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=41.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhc----C---CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADL----N---EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~----~---~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
-++.|+++|||+|++..+.+.+. . ....+..+|.+.+. .+.+.++..++|++++ +|+.+
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-----ELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-----HHHHhcCCCcccEEEEEECCceE
Confidence 37789999999999887755543 1 11126788887764 3667889999999966 56543
No 105
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.22 E-value=6.4e-06 Score=56.59 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=41.2
Q ss_pred cEEEEec-------CCChhHHHHHHHHHhcC----CCCeEEEEeCCCCHH--HHHHHHHHHcCCC-cccEEEE
Q 032253 48 KIVIFSK-------SYCPYCLRAKRIFADLN----EQPFVVELDLRDDGA--QIQYILLDLVGRR-TVPQIFV 106 (144)
Q Consensus 48 ~Vvvf~~-------~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~~~~--~~~~~l~~~~g~~-~vP~vfi 106 (144)
-++.|++ +|||.|+.+...++++. ....++.+|+++.+. .....+...++.. ++|++++
T Consensus 24 vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 24 IFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 3667889 99999999988776652 122378888876420 0013566777887 9999977
No 106
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.21 E-value=3.9e-06 Score=55.62 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=40.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC--C--CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN--E--QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~--~--~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
-++.|+++||++|+...+.+.++. . ...+..+|.+.+. ...+.+.++..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~---~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK---NKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc---cHHHHHHcCCCcCCEEEE
Confidence 477899999999999888777663 1 1125677777632 124667789999999977
No 107
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.21 E-value=6.2e-07 Score=62.41 Aligned_cols=79 Identities=15% Similarity=0.417 Sum_probs=43.1
Q ss_pred chhHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcC-CCCeEEEEeC---CCCHHHHHHHHHHH--cCCCcccEEEE
Q 032253 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-EQPFVVELDL---RDDGAQIQYILLDL--VGRRTVPQIFV 106 (144)
Q Consensus 33 ~~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~-~~~~~~~id~---~~~~~~~~~~l~~~--~g~~~vP~vfi 106 (144)
+++..+.++...++.++++++.+|||+|....++|.+.. ..|. +++.+ +.+++ .+.++ .|..++|++++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~~~e----l~~~~lt~g~~~IP~~I~ 103 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDENKE----LMDQYLTNGGRSIPTFIF 103 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHH----HTTTTTT-SS--SSEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecCChh----HHHHHHhCCCeecCEEEE
Confidence 456667777888888899999999999999998887763 2222 23332 22222 22222 57889999988
Q ss_pred ---CCEEEeccCC
Q 032253 107 ---NGEHIGGADG 116 (144)
Q Consensus 107 ---~g~~igg~~e 116 (144)
+|+.+|-+-+
T Consensus 104 ~d~~~~~lg~wge 116 (129)
T PF14595_consen 104 LDKDGKELGRWGE 116 (129)
T ss_dssp E-TT--EEEEEES
T ss_pred EcCCCCEeEEEcC
Confidence 5677765544
No 108
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.20 E-value=2.7e-06 Score=59.34 Aligned_cols=34 Identities=18% Similarity=0.462 Sum_probs=28.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~ 84 (144)
|++|+.++|++|++++++|++.++. |..+|+..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~--~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQID--YTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC--eEEEEeeCC
Confidence 7899999999999999999999976 466666444
No 109
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.19 E-value=4.7e-06 Score=60.82 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=45.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC-C--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEecc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQ-P--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGA 114 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~-~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~igg~ 114 (144)
|+-|+++|||.|+.+.+.|.++... + .++.+|.+.. .+...++..++|++++ +|+.++.+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~------~l~~~f~v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT------GASDEFDTDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch------hhHHhCCCCCCCEEEEEECCEEEEEE
Confidence 5558899999999998888776411 1 2788888753 4677889999999866 99977543
No 110
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.19 E-value=1.1e-05 Score=52.87 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=41.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC--C--CC--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN--E--QP--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~--~--~~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
-++.|+.+|||+|+.....+.++. . .. .+..+|.+.+. ...+...+|..++|++++ +|+.+
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE---HDALKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc---cHHHHHhCCCccccEEEEEeCCCee
Confidence 377899999999998877665542 1 11 25677776631 124667789999999866 66644
No 111
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.19 E-value=9.5e-06 Score=52.07 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=40.9
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC--C---CC-eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLN--E---QP-FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~--~---~~-~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
.-+++|+++||++|+++.+.+.+.. . .. .+..+|.+.+. .+.+.++.+.+|++++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN-----DLCSEYGVRGYPTIKL 77 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH-----HHHHhCCCCCCCEEEE
Confidence 3578899999999999988876642 2 11 26777776643 4677889999999976
No 112
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.18 E-value=1.3e-05 Score=52.36 Aligned_cols=59 Identities=20% Similarity=0.437 Sum_probs=42.4
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC----C-C-Ce-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN----E-Q-PF-VVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI 111 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~----~-~-~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i 111 (144)
-++.|+++||+.|+...+.++++. . . .. +..+|.+.++ .+.+.++..++|++++ +|+.+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 86 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----ELCSEFQVRGYPTLLLFKDGEKV 86 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----hhHhhcCCCcCCEEEEEeCCCee
Confidence 467799999999999888776552 1 1 12 6788877664 3556779999999876 66644
No 113
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.16 E-value=2.4e-05 Score=59.58 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=47.4
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcC---CCCeEEEEeCC----------------CCHHH-------------------
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADLN---EQPFVVELDLR----------------DDGAQ------------------- 87 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~~---~~~~~~~id~~----------------~~~~~------------------- 87 (144)
+..|++|+-+.||||+++.+.+.++. +..++..+.+. .|+..
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~ 187 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVD 187 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccch
Confidence 34488999999999999998888863 22112222221 11100
Q ss_pred --HHHHHHHHcCCCcccEEEE-CCEEEeccCC
Q 032253 88 --IQYILLDLVGRRTVPQIFV-NGEHIGGADG 116 (144)
Q Consensus 88 --~~~~l~~~~g~~~vP~vfi-~g~~igg~~e 116 (144)
...++.+..|.+++|++++ ||+.+.|+.+
T Consensus 188 v~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~ 219 (232)
T PRK10877 188 IADHYALGVQFGVQGTPAIVLSNGTLVPGYQG 219 (232)
T ss_pred HHHhHHHHHHcCCccccEEEEcCCeEeeCCCC
Confidence 0234555668899999998 9999999877
No 114
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.16 E-value=2.7e-05 Score=66.37 Aligned_cols=73 Identities=16% Similarity=0.346 Sum_probs=47.6
Q ss_pred HHHHHHhhhcCCc--EEEEecCCChhHHHHHHH-H------HhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 36 VSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRI-F------ADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 36 ~~~~~~~~~~~~~--Vvvf~~~~Cp~C~~~~~~-L------~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
..+.++.+.+.++ ++.|+.+||+.|+..++. + +.++ ...+..+|++++.++ ..++.+.++..++|++++
T Consensus 463 l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~-~~~l~~~~~v~g~Pt~~~ 540 (571)
T PRK00293 463 LDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAE-DVALLKHYNVLGLPTILF 540 (571)
T ss_pred HHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChh-hHHHHHHcCCCCCCEEEE
Confidence 3455554444333 556999999999987654 2 2222 223678898765443 346777889999999977
Q ss_pred ---CCEE
Q 032253 107 ---NGEH 110 (144)
Q Consensus 107 ---~g~~ 110 (144)
||+.
T Consensus 541 ~~~~G~~ 547 (571)
T PRK00293 541 FDAQGQE 547 (571)
T ss_pred ECCCCCC
Confidence 4654
No 115
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.15 E-value=5.8e-05 Score=53.96 Aligned_cols=65 Identities=15% Similarity=0.431 Sum_probs=41.8
Q ss_pred CcEEEEecCCChhHHHHHHHHHhc----CCC-CeEEEEeCCCCHHHHH-----------------HHHHHHcCCCcccEE
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADL----NEQ-PFVVELDLRDDGAQIQ-----------------YILLDLVGRRTVPQI 104 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~----~~~-~~~~~id~~~~~~~~~-----------------~~l~~~~g~~~vP~v 104 (144)
.-++.|+.+|||+|+.....|.+. ... ..++-++.+.+.++++ ..+.+.+|...+|++
T Consensus 63 ~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 142 (173)
T PRK03147 63 GVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTT 142 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeE
Confidence 346789999999998766555443 211 1256666665544322 355677788899987
Q ss_pred EE---CCEEE
Q 032253 105 FV---NGEHI 111 (144)
Q Consensus 105 fi---~g~~i 111 (144)
|+ +|+.+
T Consensus 143 ~lid~~g~i~ 152 (173)
T PRK03147 143 FLIDKDGKVV 152 (173)
T ss_pred EEECCCCcEE
Confidence 65 57755
No 116
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.13 E-value=5.6e-06 Score=57.85 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=28.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~ 84 (144)
|.+|+.++|+.|++|+++|++.++. |..+|+..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~--~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLS--YKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCC--eEEEECCCC
Confidence 7899999999999999999999976 466666433
No 117
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.11 E-value=1.3e-05 Score=46.17 Aligned_cols=58 Identities=29% Similarity=0.568 Sum_probs=41.4
Q ss_pred EEEEecCCChhHHHHHHHHHhc---CCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADL---NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~---~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g 108 (144)
+++|+.++||+|.++...+++. .....+..+|.+....... .....+..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK--ELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh--HHHhCCCccccEEEEEe
Confidence 4789999999999999999953 2112267888877654321 13456788999998854
No 118
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.11 E-value=1.7e-05 Score=48.72 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=47.0
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccC
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGAD 115 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~ 115 (144)
.+|+.+.||+|.+++.+|...++......+|.... +...+.+.+.+....+|++..+|..+....
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~i~es~ 66 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKG-ETRTPEFLALNPNGEVPVLELDGRVLAESN 66 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCc-ccCCHHHHHhCCCCCCCEEEECCEEEEcHH
Confidence 57999999999999999999996533455554332 112345666777889999999987665433
No 119
>PTZ00062 glutaredoxin; Provisional
Probab=98.10 E-value=8.2e-06 Score=61.01 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=42.4
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCC-C--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEeccCC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQ-P--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGADG 116 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~-~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~igg~~e 116 (144)
.|+.|+.+|||.|+.+..++.++... + .++.+|.+ ++...+|++++ ||+.++.++.
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~~~g~~i~r~~G 80 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFYQNSQLINSLEG 80 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEEECCEEEeeeeC
Confidence 46677799999999999999888521 1 15666644 68899998866 8998876553
No 120
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.10 E-value=8.5e-06 Score=53.30 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=39.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
++.|+.+||+.|+.....+.++. -...+..+|.+.++ .+.+.++.+++|++++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-----SLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-----HHHHHCCCCccCEEEE
Confidence 77889999999999988776653 12226788887653 3567789999999866
No 121
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.01 E-value=2.7e-05 Score=55.71 Aligned_cols=63 Identities=21% Similarity=0.402 Sum_probs=38.5
Q ss_pred hcCCcEEEEecCCChhHHHHHHHHHhcCCC--CeEEEEeCCCCHH-----H---HHHHHHHHc---CCCcccEEEE
Q 032253 44 IFSNKIVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLRDDGA-----Q---IQYILLDLV---GRRTVPQIFV 106 (144)
Q Consensus 44 ~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~--~~~~~id~~~~~~-----~---~~~~l~~~~---g~~~vP~vfi 106 (144)
.....++.|+.+|||+|++....|+++... ..++-++++.... . ..+.....+ +..++|+.|+
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 345569999999999999998888766311 1134444433210 0 011223344 6789999987
No 122
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.1e-05 Score=63.22 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=66.7
Q ss_pred cCCCCCCccchhHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcC-CCCeEEEEeCCCCHHHHHHHHHHHcCCCccc
Q 032253 24 GNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-EQPFVVELDLRDDGAQIQYILLDLVGRRTVP 102 (144)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~-~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP 102 (144)
....+++..+.+..+.++.+-.+..+.-|..-+|..|..+.+.|+-+. .+|.+...-++- .-++++...+ +..+||
T Consensus 95 qv~G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdG--a~Fq~Evear-~IMaVP 171 (520)
T COG3634 95 QVGGHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDG--ALFQDEVEAR-NIMAVP 171 (520)
T ss_pred HhcCCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecc--hhhHhHHHhc-cceecc
Confidence 334456777889999999999999999999999999999999888876 345445555543 3445555554 788999
Q ss_pred EEEECCEEEe
Q 032253 103 QIFVNGEHIG 112 (144)
Q Consensus 103 ~vfi~g~~ig 112 (144)
+||.||+.+|
T Consensus 172 tvflnGe~fg 181 (520)
T COG3634 172 TVFLNGEEFG 181 (520)
T ss_pred eEEEcchhhc
Confidence 9999999886
No 123
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.98 E-value=3.6e-05 Score=51.48 Aligned_cols=57 Identities=14% Similarity=0.473 Sum_probs=39.5
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC----CCCe-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLN----EQPF-VVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
.-++.|+.+|||+|+...+.+.++. -... +..+|.+.+... ...+.++...+|++++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~---~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE---FAKEELQLKSFPTILF 84 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh---hHHhhcCCCcCCEEEE
Confidence 4477899999999999988887653 1112 667787763221 2334578999999965
No 124
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.97 E-value=3.6e-05 Score=48.05 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=49.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+.+|+.+.||+|++++.+|.+.++...++.+|...... ..+++.+.+....+|.+..||..+.....
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~-~~~~~~~inP~g~vP~L~~~g~~l~Es~a 67 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEH-NEPWFMRLNPTGEVPVLIHGDNIICDPTQ 67 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCcc-CCHHHHHhCcCCCCCEEEECCEEEEcHHH
Confidence 46899999999999999999999653356666643211 13457788888999999988876654443
No 125
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.97 E-value=5e-05 Score=49.54 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=39.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC-----CCCe-EEEEeCCC-CHHHHHHHHHHHcCCCcccEEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN-----EQPF-VVELDLRD-DGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~-----~~~~-~~~id~~~-~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
-++.|+.+|||.|++..+.+.++. ...+ +..+|.+. ++ .+.+.++..++|++++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK-----DLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch-----hhHHhCCCCCcCEEEE
Confidence 377899999999998888776642 1122 67788777 43 3566778999999976
No 126
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.95 E-value=3.6e-05 Score=48.97 Aligned_cols=67 Identities=21% Similarity=0.401 Sum_probs=42.0
Q ss_pred hhHHHHHHhhhcCCc--EEEEecCCChhHHHHHHHHHh-------cCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEE
Q 032253 34 HSVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIFAD-------LNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQI 104 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~--Vvvf~~~~Cp~C~~~~~~L~~-------~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~v 104 (144)
.+..+++..+.+.++ +++|+++||++|+...+.+-. +..+...+.+|.+...... .+.. ..+|++
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~ 77 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTF 77 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEE
Confidence 456667777666655 667899999999988775522 2212226777886554322 2222 449999
Q ss_pred EE
Q 032253 105 FV 106 (144)
Q Consensus 105 fi 106 (144)
++
T Consensus 78 ~~ 79 (82)
T PF13899_consen 78 FF 79 (82)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 127
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.94 E-value=6e-05 Score=55.59 Aligned_cols=71 Identities=18% Similarity=0.377 Sum_probs=45.8
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhc--CCCCeEEEEeCCC---------------CH-----------------------
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADL--NEQPFVVELDLRD---------------DG----------------------- 85 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~--~~~~~~~~id~~~---------------~~----------------------- 85 (144)
+..|++|+.+.||||+++.+.+.+. ++..+++.+.+.. ++
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~~ 157 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDNP 157 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCch
Confidence 4558999999999999999988752 1211122222111 00
Q ss_pred HHHHHHHHHHcCCCcccEEEE-CCEEEeccCC
Q 032253 86 AQIQYILLDLVGRRTVPQIFV-NGEHIGGADG 116 (144)
Q Consensus 86 ~~~~~~l~~~~g~~~vP~vfi-~g~~igg~~e 116 (144)
-.....+.+..|.+++|++++ ||+.+.|+.+
T Consensus 158 i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~ 189 (197)
T cd03020 158 VAANLALGRQLGVNGTPTIVLADGRVVPGAPP 189 (197)
T ss_pred HHHHHHHHHHcCCCcccEEEECCCeEecCCCC
Confidence 000224555668899999999 5999999887
No 128
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.93 E-value=2e-05 Score=53.64 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=28.4
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRD 83 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~ 83 (144)
.|.+|+.|.|+.|++|+++|++.++. |..+|+..
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~--~~~~d~~~ 34 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHE--VEVRDLLT 34 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCC--cEEeehhc
Confidence 37899999999999999999999976 45666543
No 129
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.91 E-value=9.4e-05 Score=50.74 Aligned_cols=64 Identities=22% Similarity=0.419 Sum_probs=42.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhc----CCC--Ce-EEEEeCCCCHHHH-------------------HHHHHHHcCCCcc
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADL----NEQ--PF-VVELDLRDDGAQI-------------------QYILLDLVGRRTV 101 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~----~~~--~~-~~~id~~~~~~~~-------------------~~~l~~~~g~~~v 101 (144)
-++.|+.+|||.|++....|.++ ... .. ++-++.+.+.+.+ ...+.+.+|...+
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGI 100 (131)
T ss_pred EEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCC
Confidence 46678899999999877766543 111 12 4555655543322 2356677899999
Q ss_pred cEEEE---CCEEE
Q 032253 102 PQIFV---NGEHI 111 (144)
Q Consensus 102 P~vfi---~g~~i 111 (144)
|++++ +|+.+
T Consensus 101 P~~~lid~~G~i~ 113 (131)
T cd03009 101 PTLIILDADGEVV 113 (131)
T ss_pred CEEEEECCCCCEE
Confidence 99987 67655
No 130
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.90 E-value=4.1e-05 Score=56.69 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=43.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC---CeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEecc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGA 114 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~---~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~igg~ 114 (144)
||-|+.+|||.|+.+.+.|.++... ..|+.+|.+.. ...++...+|++++ ||+.++.+
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~--------~~~~~i~~lPTlliyk~G~~v~~i 168 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC--------IPNYPDKNLPTILVYRNGDIVKQF 168 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh--------HhhCCCCCCCEEEEEECCEEEEEE
Confidence 4558999999999999988887411 12678887632 35678999999977 88866433
No 131
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.86 E-value=0.00016 Score=49.69 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=38.4
Q ss_pred EEEEecCCChh--HH--HHHHHHHh--------cCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEe
Q 032253 49 IVIFSKSYCPY--CL--RAKRIFAD--------LNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 49 Vvvf~~~~Cp~--C~--~~~~~L~~--------~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
|+.|+..||+. |+ ...+.+.+ -++. +..+|.+.++ ++.+.+|.+++|++++ ||+.+.
T Consensus 31 vv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~--~~kVD~d~~~-----~La~~~~I~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 31 LLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIG--FGLVDSKKDA-----KVAKKLGLDEEDSIYVFKDDEVIE 101 (120)
T ss_pred EEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCE--EEEEeCCCCH-----HHHHHcCCccccEEEEEECCEEEE
Confidence 44455666754 98 33433322 2322 7899999874 3888999999999955 998663
No 132
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.85 E-value=7.4e-05 Score=50.58 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=39.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCC-----CC--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNE-----QP--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~-----~~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
-++.|+.+|||.|+.....+.++.. .. .+..+|.+.+. ...+.+.++.+.+|++++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---hHHHHHhCCCCCCCEEEE
Confidence 3677999999999998887766531 11 14566654432 134667789999999977
No 133
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.83 E-value=6.6e-05 Score=55.14 Aligned_cols=60 Identities=25% Similarity=0.516 Sum_probs=37.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhc----CCCCeEEEEeCCCCH---------HHHHHHHHHHcCC--CcccEEEE---CCE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRDDG---------AQIQYILLDLVGR--RTVPQIFV---NGE 109 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~----~~~~~~~~id~~~~~---------~~~~~~l~~~~g~--~~vP~vfi---~g~ 109 (144)
++++|+.+|||+|++....|.++ ++. ++-++++.+. .. ...+...+|. ..+|+.|+ +|+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~--Vi~Vs~D~~~~~~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFS--VFPYTLDGQGDTAFPEALPAP-PDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCE--EEEEEeCCCCCCCCceEecCc-hhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 38999999999999886666554 432 3334433221 00 1235556674 69999988 665
Q ss_pred E
Q 032253 110 H 110 (144)
Q Consensus 110 ~ 110 (144)
.
T Consensus 149 i 149 (181)
T PRK13728 149 E 149 (181)
T ss_pred E
Confidence 3
No 134
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.76 E-value=0.00021 Score=44.30 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=47.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+.+|+.+.||+|++++-+|...++......+|..... ...+.+.+.+....+|.+..+|..+..-..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~~~vP~l~~~g~~l~es~a 68 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPFGQIPALEDGDLKLFESRA 68 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCCCCCCEEEECCEEEEcHHH
Confidence 5689999999999999999999965334455553221 113456677888999999888876654444
No 135
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.73 E-value=0.00017 Score=52.13 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=39.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC-CeEEEEeCCCCHHHHHHH------------------HHHHcCCCcccE-EEE--
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQ-PFVVELDLRDDGAQIQYI------------------LLDLVGRRTVPQ-IFV-- 106 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~-~~~~~id~~~~~~~~~~~------------------l~~~~g~~~vP~-vfi-- 106 (144)
++.|+.+|||.|++....++++... ..++-++.+.+.++.++. +.+.++..++|+ ++|
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~ 146 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDG 146 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcC
Confidence 6678899999999988877776311 125666654443332222 233456678995 555
Q ss_pred CCEEE
Q 032253 107 NGEHI 111 (144)
Q Consensus 107 ~g~~i 111 (144)
+|+.+
T Consensus 147 ~G~i~ 151 (173)
T TIGR00385 147 NGVIL 151 (173)
T ss_pred CceEE
Confidence 57744
No 136
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.73 E-value=9.6e-05 Score=57.53 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=42.8
Q ss_pred HhhhcCCcEEEEecCCChhHHHHHHHHHhcCCC--CeEEEEeCCCCHHH------HHHHHHHHcCCCcccEEEE
Q 032253 41 QNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLRDDGAQ------IQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 41 ~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~--~~~~~id~~~~~~~------~~~~l~~~~g~~~vP~vfi 106 (144)
+.+....-++.|+++|||+|+.....|+++... ..++.++++.+... ....+.+.+|..++|++|+
T Consensus 162 ~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 162 KDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 334445557889999999999998888776411 11455565442100 0023567789999999987
No 137
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.73 E-value=0.00027 Score=48.71 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=41.5
Q ss_pred EEEEecCCChhHHHHHHHHHhc----CCC--C-eEEEEeCCCCHHHH--------------------HHHHHHHcCCCcc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADL----NEQ--P-FVVELDLRDDGAQI--------------------QYILLDLVGRRTV 101 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~----~~~--~-~~~~id~~~~~~~~--------------------~~~l~~~~g~~~v 101 (144)
++.|+.+|||.|++....|+++ +.. . .++-++.+.+.+.+ ...+.+.++..++
T Consensus 21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~i 100 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGI 100 (132)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCC
Confidence 6678899999999877766543 211 1 24555555543221 3456677889999
Q ss_pred cEEEE---CCEEEe
Q 032253 102 PQIFV---NGEHIG 112 (144)
Q Consensus 102 P~vfi---~g~~ig 112 (144)
|++++ +|+.+.
T Consensus 101 Pt~~lid~~G~iv~ 114 (132)
T cd02964 101 PTLVVLKPDGDVVT 114 (132)
T ss_pred CEEEEECCCCCEEc
Confidence 99986 576653
No 138
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.71 E-value=0.00031 Score=49.92 Aligned_cols=64 Identities=16% Similarity=0.322 Sum_probs=42.7
Q ss_pred cEEEEecCCChhHHHHHHHHHhc----CC-------CCe-EEEEeCCCCHHHHHH--------------------HHHHH
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADL----NE-------QPF-VVELDLRDDGAQIQY--------------------ILLDL 95 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~----~~-------~~~-~~~id~~~~~~~~~~--------------------~l~~~ 95 (144)
-++-|+++|||.|++..+.|.++ .. ..+ ++-++.+.+.+..++ .+...
T Consensus 28 vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~ 107 (146)
T cd03008 28 LLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQ 107 (146)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHH
Confidence 35568999999999999888663 11 112 566666655443222 35555
Q ss_pred cCCCcccEEEE---CCEEE
Q 032253 96 VGRRTVPQIFV---NGEHI 111 (144)
Q Consensus 96 ~g~~~vP~vfi---~g~~i 111 (144)
+|..++|+.|+ +|+.+
T Consensus 108 y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 108 FSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred cCCCCCCEEEEECCCCcEE
Confidence 67788999988 67766
No 139
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.71 E-value=0.00019 Score=47.03 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 55 ~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
..||||++++-.|.+.++...+..+|....++ .+.+.+-...+|++..+|..+..-+.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~----~~~~~nP~g~vPvL~~~~~~i~eS~~ 77 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPE----DLKDLAPGTQPPFLLYNGEVKTDNNK 77 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCH----HHHHhCCCCCCCEEEECCEEecCHHH
Confidence 67999999999999999654467777766543 36677777899999888887765555
No 140
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.70 E-value=0.00016 Score=44.53 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 55 ~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
++||+|.+++.+|...++. | ..++++... .+....+|.+..+|+.+.+...
T Consensus 14 s~sp~~~~v~~~L~~~~i~-~-~~~~~~~~~---------~~p~g~vP~l~~~g~~l~es~~ 64 (72)
T cd03054 14 SLSPECLKVETYLRMAGIP-Y-EVVFSSNPW---------RSPTGKLPFLELNGEKIADSEK 64 (72)
T ss_pred CCCHHHHHHHHHHHhCCCc-e-EEEecCCcc---------cCCCcccCEEEECCEEEcCHHH
Confidence 5899999999999999965 3 444444321 3456689999999998887776
No 141
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.69 E-value=0.00021 Score=46.57 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=37.4
Q ss_pred cEEEEecCCChhHHHHHHHHHhcC----C-CCe-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLN----E-QPF-VVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~----~-~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
-++.|+.+||++|+.....+.+.. . ... +..+|.+.+. +...++..++|++++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND------VPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh------hhhhccCCCCCEEEE
Confidence 367799999999999988887663 1 112 5677776541 334556789999977
No 142
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.69 E-value=0.00034 Score=43.28 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=43.5
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcC-CCcccEEEECCEEEeccCC
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVG-RRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g-~~~vP~vfi~g~~igg~~e 116 (144)
.+|+.+.||+|.+++.+|...++......+|.... ..++.+... ...+|.+..+|..+.....
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~----~~~~~~~~p~~~~vP~l~~~~~~l~eS~a 65 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNK----SELLLASNPVHKKIPVLLHNGKPICESLI 65 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccC----CHHHHHhCCCCCCCCEEEECCEEeehHHH
Confidence 57899999999999999999996533444444322 123455555 3789999888866554443
No 143
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.67 E-value=0.00039 Score=47.29 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=40.7
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCC-e-EEEEeCCCCHHHHHH------------------HHHHHcCCCccc-EEE
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQP-F-VVELDLRDDGAQIQY------------------ILLDLVGRRTVP-QIF 105 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~-~-~~~id~~~~~~~~~~------------------~l~~~~g~~~vP-~vf 105 (144)
.-|+.|+.+|||.|+.....|.++.... . ++.++.+.+.+..++ .+...++...+| +++
T Consensus 27 ~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ 106 (127)
T cd03010 27 PYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFL 106 (127)
T ss_pred EEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEE
Confidence 3477899999999998888887764111 1 555655444333332 234456778899 455
Q ss_pred E--CCEEE
Q 032253 106 V--NGEHI 111 (144)
Q Consensus 106 i--~g~~i 111 (144)
+ +|+.+
T Consensus 107 ld~~G~v~ 114 (127)
T cd03010 107 IDGDGIIR 114 (127)
T ss_pred ECCCceEE
Confidence 5 56644
No 144
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.58 E-value=0.00088 Score=43.15 Aligned_cols=59 Identities=22% Similarity=0.464 Sum_probs=36.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhc----C-CCCe-EEEEeCCCCHHHHHHH--------------------HHHHcCCCcc
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADL----N-EQPF-VVELDLRDDGAQIQYI--------------------LLDLVGRRTV 101 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~----~-~~~~-~~~id~~~~~~~~~~~--------------------l~~~~g~~~v 101 (144)
-++.|+++|||.|++..+.|.++ + .... ++-+..+++.++.++. +.+.++...+
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~i 83 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGI 83 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSS
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcC
Confidence 36789999999999888777665 3 1122 6666666665554433 3444455667
Q ss_pred cEEEE
Q 032253 102 PQIFV 106 (144)
Q Consensus 102 P~vfi 106 (144)
|++++
T Consensus 84 P~~~l 88 (95)
T PF13905_consen 84 PTLVL 88 (95)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77766
No 145
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.58 E-value=0.00017 Score=56.13 Aligned_cols=58 Identities=19% Similarity=0.407 Sum_probs=44.6
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEE
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEH 110 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~ 110 (144)
-++++|-..+||||.+++++|+-+++.+.++++|...- .+ .+.+....||.+.++|+-
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r-----~e-Ik~SsykKVPil~~~Geq 146 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR-----QE-IKWSSYKKVPILLIRGEQ 146 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh-----hh-ccccccccccEEEeccce
Confidence 36999999999999999999999996433666665432 12 245577899999999884
No 146
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.57 E-value=0.00024 Score=53.54 Aligned_cols=69 Identities=17% Similarity=0.336 Sum_probs=46.3
Q ss_pred HHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhc----CCCCeEEEEeCCCCH-----HH-HHHHHHHHcCCCcccEEE
Q 032253 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRDDG-----AQ-IQYILLDLVGRRTVPQIF 105 (144)
Q Consensus 36 ~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~----~~~~~~~~id~~~~~-----~~-~~~~l~~~~g~~~vP~vf 105 (144)
..+.++.+....-+++|++++||+|+....+++.+ |.. ++.|+++..+ .. .-..+.+..|...+|.+|
T Consensus 111 ~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~--v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 111 RDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFS--VIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred HHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCE--EEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 34455556666779999999999999988888766 433 4555554210 00 012355677999999999
Q ss_pred E
Q 032253 106 V 106 (144)
Q Consensus 106 i 106 (144)
+
T Consensus 189 L 189 (215)
T PF13728_consen 189 L 189 (215)
T ss_pred E
Confidence 8
No 147
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.57 E-value=0.00082 Score=54.88 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=41.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-----CC--CeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN-----EQ--PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEH 110 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~-----~~--~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ 110 (144)
++.|+++||++|+.....+.+.. .. ..+..+|.+.++ ++.+.+|..++|++++ +|+.
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-----DLAQKYGVSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH-----HHHHhCCCccccEEEEEeCCcc
Confidence 67799999999998887665431 11 226788887763 3667889999999966 5654
No 148
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.55 E-value=0.00012 Score=49.69 Aligned_cols=34 Identities=9% Similarity=0.211 Sum_probs=28.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~ 84 (144)
|.+|+.++|+.|++++.+|++.++. +..+|+.++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~--~~~~di~~~ 34 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIE--PEVVKYLKN 34 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC--eEEEeccCC
Confidence 4699999999999999999999966 467776544
No 149
>PRK10026 arsenate reductase; Provisional
Probab=97.53 E-value=0.00018 Score=50.84 Aligned_cols=36 Identities=8% Similarity=0.214 Sum_probs=29.6
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCC
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~ 84 (144)
..+.+|+.+.|..|+++.++|+++++. |..+|+..+
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~--~~~~d~~~~ 37 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTE--PTIIHYLET 37 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCC--cEEEeeeCC
Confidence 358899999999999999999999976 456665443
No 150
>PLN02309 5'-adenylylsulfate reductase
Probab=97.53 E-value=0.00073 Score=56.24 Aligned_cols=56 Identities=18% Similarity=0.405 Sum_probs=39.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCC----C-CeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNE----Q-PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~----~-~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
-+|.|+.+|||+|+.+...+.++.. . ..+..+|.+.+.. +...+.++..++|++++
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCCCceeeEEEE
Confidence 3778999999999999988877631 1 1267888773312 12334579999999976
No 151
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.52 E-value=0.00052 Score=57.16 Aligned_cols=55 Identities=18% Similarity=0.416 Sum_probs=40.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC----C-CeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNE----Q-PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~----~-~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
++.|+.+|||+|+.+.+.+.++.. . ..+..+|++.+.. +...+.++..++|++++
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~---~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK---EFAKQELQLGSFPTILF 434 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc---HHHHHHcCCCccceEEE
Confidence 677999999999999988877631 1 1267788876532 22345679999999966
No 152
>PRK10853 putative reductase; Provisional
Probab=97.49 E-value=7.7e-05 Score=51.13 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=28.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~ 84 (144)
+.+|+.+.|..|++|+++|++.++. +..+|...+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~--~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGID--YRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCC--cEEeehccC
Confidence 6899999999999999999999976 456665443
No 153
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00022 Score=54.62 Aligned_cols=65 Identities=29% Similarity=0.503 Sum_probs=49.4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCC---eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEE---eccCC
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQP---FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHI---GGADG 116 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~---~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~i---gg~~e 116 (144)
.-+|=|+.+||.-|.++-.++..+...+ .|.++|+++... ....+|+...|++++ ||.-+ -|.|+
T Consensus 23 ~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~-----taa~~gV~amPTFiff~ng~kid~~qGAd~ 95 (288)
T KOG0908|consen 23 LVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG-----TAATNGVNAMPTFIFFRNGVKIDQIQGADA 95 (288)
T ss_pred EEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc-----hhhhcCcccCceEEEEecCeEeeeecCCCH
Confidence 3466799999999999999999986222 178999987533 456779999999844 88765 46665
No 154
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.47 E-value=0.00024 Score=48.09 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=28.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~ 84 (144)
+.+|+.+.|+.|++|+++|++.++. |..+|+.++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~--~~~~di~~~ 34 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIE--PEIVEYLKT 34 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC--eEEEecccC
Confidence 4799999999999999999999965 467776443
No 155
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.47 E-value=0.00058 Score=41.77 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=46.0
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEecc
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGA 114 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~ 114 (144)
.+|+.+.||.|.+++.+|...++......+|..... ...+++.+.+....+|++..+|..+...
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es 65 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGE-QLSPAYRALNPQGLVPTLVIDGLVLTQS 65 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCC-cCChHHHHhCCCCCCCEEEECCEEEEcH
Confidence 478889999999999999999965335566653321 1124566777888999999888766443
No 156
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.46 E-value=0.00059 Score=42.01 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=42.8
Q ss_pred EEEecCCChhHHHHHHHHHh--cCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE-CCEEEeccC
Q 032253 50 VIFSKSYCPYCLRAKRIFAD--LNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGAD 115 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~--~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~g~~igg~~ 115 (144)
.+|+.+.||+|.+++.+|.. .++....+.+|..... +++........+|.+.. ||..+....
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~p~~~vP~l~~~~g~~l~es~ 66 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDD----ESLLAVNPLGKIPALVLDDGEALFDSR 66 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCC----hHHHHhCCCCCCCEEEECCCCEEECHH
Confidence 57889999999999999999 7754224444433322 34556777889999986 666554433
No 157
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.00027 Score=46.63 Aligned_cols=82 Identities=22% Similarity=0.199 Sum_probs=57.8
Q ss_pred cEEEEecCCChhHH------HHHHHHHhcCCCCeEEEEeCCCCHHH-------HHHHHHHHcCCCcccEEEECCEEEecc
Q 032253 48 KIVIFSKSYCPYCL------RAKRIFADLNEQPFVVELDLRDDGAQ-------IQYILLDLVGRRTVPQIFVNGEHIGGA 114 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~------~~~~~L~~~~~~~~~~~id~~~~~~~-------~~~~l~~~~g~~~vP~vfi~g~~igg~ 114 (144)
.+.+|+++..+.-. ++..+|+...+. +.++|+....+. +.++.+-..|.+..|+||.++++.|++
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~--fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdy 80 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIG--FKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDY 80 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCC--cceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccH
Confidence 46677765544432 445567766533 477887544221 123445556888999999999999999
Q ss_pred CCcchhhhhhhHHHHHHHHcCchhHhhc
Q 032253 115 DGWSQLSLAHSTYLKAAVLSGQLQQLLG 142 (144)
Q Consensus 115 ~e~~~~~~~~~~~~~~~~~~g~L~~~l~ 142 (144)
+. +.+..+++.|+++|+
T Consensus 81 e~-----------F~ea~E~ntl~eFL~ 97 (108)
T KOG4023|consen 81 EL-----------FFEAVEQNTLQEFLG 97 (108)
T ss_pred HH-----------HHHHHHHHHHHHHHc
Confidence 99 989999999999986
No 158
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.00022 Score=48.80 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=25.4
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCe
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPF 75 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~ 75 (144)
.|.+|+.|.|..|++|+++|+++++.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~ 29 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYT 29 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcE
Confidence 4889999999999999999999997743
No 159
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.38 E-value=0.00025 Score=43.78 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE-CCEEEeccCC
Q 032253 56 YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGADG 116 (144)
Q Consensus 56 ~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~g~~igg~~e 116 (144)
.||+|+++.-+|..+++...+..++...++....+.+.+.++..+||.+.. +|+.+.....
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~ 62 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLA 62 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHH
Confidence 499999999999999965444555432221111235788889999999998 7887765544
No 160
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.38 E-value=0.00039 Score=48.19 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=26.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeC
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~ 81 (144)
.+.+|+.+.|..|++++++|++.++.+ ..+|+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~--~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDV--EVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCc--EEEec
Confidence 478999999999999999999999763 44554
No 161
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.38 E-value=0.0016 Score=40.28 Aligned_cols=64 Identities=8% Similarity=-0.115 Sum_probs=46.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+.+|+.+.|+.|++++.+|...++......++. + +..+++...+....+|++..||..+.....
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~--~--~~~~~~~~~~p~~~vP~l~~~~~~l~es~a 65 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTY--E--EWQESLKPKMLFGQLPCFKDGDLTLVQSNA 65 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH--H--HhhhhhhccCCCCCCCEEEECCEEEEcHHH
Confidence 567888899999999999999996522344443 1 223456667777899999998877655444
No 162
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.36 E-value=0.00079 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=19.2
Q ss_pred CcEEEEecCCChhHHHHHHHHHh
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFAD 69 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~ 69 (144)
..|++|+-+.||||++...-+..
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHH
Confidence 44889999999999999776654
No 163
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.33 E-value=0.0023 Score=54.10 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=19.0
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
++.|+++|||.|++..+.|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 6679999999999988888766
No 164
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.33 E-value=0.00037 Score=46.89 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=49.0
Q ss_pred hhHHHHHHhhhcCCc--EEEEecCCChhHHHHHH-HHHhcCC-----CCe-EEEEeCCCCHHHHHHHHHHHcCCCcccEE
Q 032253 34 HSVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKR-IFADLNE-----QPF-VVELDLRDDGAQIQYILLDLVGRRTVPQI 104 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~--Vvvf~~~~Cp~C~~~~~-~L~~~~~-----~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~v 104 (144)
.+..++++.+.+.++ ++.++.+||++|+...+ +|..-.+ ..+ ...+|+... + -..+...++..++|++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e--~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-E--GQRFLQSYKVDKYPHI 80 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-c--HHHHHHHhCccCCCeE
Confidence 345667777776666 55677899999998754 5543221 123 556677652 2 2357888899999999
Q ss_pred EE----CCEEE
Q 032253 105 FV----NGEHI 111 (144)
Q Consensus 105 fi----~g~~i 111 (144)
++ +|+.+
T Consensus 81 ~~i~~~~g~~l 91 (114)
T cd02958 81 AIIDPRTGEVL 91 (114)
T ss_pred EEEeCccCcEe
Confidence 66 46654
No 165
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.32 E-value=0.0016 Score=40.40 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=45.0
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEe
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~ig 112 (144)
.+|+.+.||+|+++..+|...++......+|..... ...+.+...+....+|.+..+|..+.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~ 63 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGE-QLTPEFKKINPFGKVPAIVDGDFTLA 63 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCC-cCCHHHHHhCcCCCCCEEEECCEEEE
Confidence 589999999999999999999965334555554321 11235666777889999988876553
No 166
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.32 E-value=0.0014 Score=42.47 Aligned_cols=62 Identities=27% Similarity=0.376 Sum_probs=38.4
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcC--C--CC-eEEEEeCCCC-HHHHHH-----------------HHHHHcCCCcc
Q 032253 45 FSNKIVIFSKSYCPYCLRAKRIFADLN--E--QP-FVVELDLRDD-GAQIQY-----------------ILLDLVGRRTV 101 (144)
Q Consensus 45 ~~~~Vvvf~~~~Cp~C~~~~~~L~~~~--~--~~-~~~~id~~~~-~~~~~~-----------------~l~~~~g~~~v 101 (144)
.+.-++.|+.+|||.|+.....+.++. . .. .++-++.+.+ ++.+++ .+.+.+|...+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 344578899999999997766665542 1 11 2666677664 444333 24445566678
Q ss_pred cEEEE
Q 032253 102 PQIFV 106 (144)
Q Consensus 102 P~vfi 106 (144)
|.+++
T Consensus 99 P~~~l 103 (116)
T cd02966 99 PTTFL 103 (116)
T ss_pred ceEEE
Confidence 87765
No 167
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.32 E-value=0.00077 Score=43.98 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=41.4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC--C--CCeEEEEeCCCCHHHHHHHHHHHcCCC--cccEEEE
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLN--E--QPFVVELDLRDDGAQIQYILLDLVGRR--TVPQIFV 106 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~--~--~~~~~~id~~~~~~~~~~~l~~~~g~~--~vP~vfi 106 (144)
.-+++|+.+||+.|..+++.+.++. . ...+..+|.++.+ .+.+.+|.. ++|++.+
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~-----~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG-----RHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH-----HHHHHcCCChhhCCEEEE
Confidence 4477788999999999999888764 1 1126788887653 356677888 9999987
No 168
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.31 E-value=0.0019 Score=44.67 Aligned_cols=25 Identities=28% Similarity=0.475 Sum_probs=20.3
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhc
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
+..|++|+.++||+|+++...+.++
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~ 30 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKL 30 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHH
Confidence 4568899999999999887776653
No 169
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.28 E-value=0.00097 Score=49.58 Aligned_cols=61 Identities=25% Similarity=0.480 Sum_probs=43.6
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEE-ECCEEEeccCC
Q 032253 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF-VNGEHIGGADG 116 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf-i~g~~igg~~e 116 (144)
+|+.+.||+|++++-+|...++. |..+++..... .. ..+.++...+|++. .||..+.+...
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~--~e~~~~~~~~~--~~-~~~~np~g~vP~l~~~~g~~l~es~~ 63 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIP--VEKHVLLNDDE--ET-PIRMIGAKQVPILQKDDGRAMPESLD 63 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCC--eEEEECCCCcc--hh-HHHhcCCCCcceEEeeCCeEeccHHH
Confidence 68889999999999999999965 34455543322 11 24556678999997 67877766555
No 170
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.25 E-value=0.00077 Score=42.78 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=41.9
Q ss_pred cCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC-CEEEeccCC
Q 032253 54 KSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGGADG 116 (144)
Q Consensus 54 ~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-g~~igg~~e 116 (144)
.++||+|.+++.+|...++......++..... ....++ .......+|++..+ |..+.....
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~-~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~a 74 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIP-PILGEL-TSGGFYTVPVIVDGSGEVIGDSFA 74 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeEEEecCCCcc-cccccc-cCCCCceeCeEEECCCCEEeCHHH
Confidence 37899999999999999965335556654332 112334 45667899999887 777665544
No 171
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.24 E-value=0.0019 Score=40.55 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=45.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC---CEEEecc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN---GEHIGGA 114 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~---g~~igg~ 114 (144)
+.+|+.+. |+|++++.+|...++......++..... ...+++.+.+....+|.+..+ |..+...
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS 68 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGE-QKKPEFLKINPNGRIPAIVDHNGTPLTVFES 68 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCc-ccCHHHHHhCcCCCCCEEEeCCCCceEEEcH
Confidence 56888776 9999999999999965435666654321 113456677778899999887 6555433
No 172
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=97.19 E-value=0.0081 Score=42.20 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=48.0
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCC----CcccEEEECCEEEeccCC
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR----RTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~----~~vP~vfi~g~~igg~~e 116 (144)
.++++|..|+|.=|..-.+.++..+.+ +......+ ...+++.+|. .+==|.+|||.+|-|.-.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~---Vk~~~~~d----~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVP 92 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFE---VKVVETDD----FLALKRRLGIPYEMQSCHTAVINGYYVEGHVP 92 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcE---EEEeecCc----HHHHHHhcCCChhhccccEEEEcCEEEeccCC
Confidence 358999999999999999999988854 23333333 3457777775 467789999999998877
No 173
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.16 E-value=0.0022 Score=43.14 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=37.8
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCC-HHHHH-----------------HHHHHHcCCCcccEEEE
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD-GAQIQ-----------------YILLDLVGRRTVPQIFV 106 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~-~~~~~-----------------~~l~~~~g~~~vP~vfi 106 (144)
..-++.|+.+|||.|+...+.|..+.....++-+..+.+ .+++. ..+.+.++..++|++++
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~v 99 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVI 99 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEEE
Confidence 345778999999999988877776542211233332221 12111 23666778899999877
No 174
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.16 E-value=0.0062 Score=44.72 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=36.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC--CeEEEEeCCCCHHHHH----------------HHHHHHcCCCcccEEEE---C
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLRDDGAQIQ----------------YILLDLVGRRTVPQIFV---N 107 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~--~~~~~id~~~~~~~~~----------------~~l~~~~g~~~vP~vfi---~ 107 (144)
++.|+++|||.|++..+.+.+.... ..++-+..+ ++++.+ .++.+.+|...+|+.|+ +
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~~ 156 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDG-TPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQD 156 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCC-CHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEECCC
Confidence 6679999999999877666544211 113333322 222222 13345567788998777 5
Q ss_pred CEEE
Q 032253 108 GEHI 111 (144)
Q Consensus 108 g~~i 111 (144)
|+.+
T Consensus 157 G~I~ 160 (189)
T TIGR02661 157 GKIR 160 (189)
T ss_pred CeEE
Confidence 7755
No 175
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.15 E-value=0.0025 Score=39.56 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=40.2
Q ss_pred EEEEecC-------CChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 49 IVIFSKS-------YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 49 Vvvf~~~-------~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+.+|..+ .||+|.+++.+|...++. + ..++++. ...+....+|.+..+|+.+.....
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~-~-~~~~~~~---------~~~~p~g~vPvl~~~g~~l~eS~~ 65 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIP-Y-ENKFGGL---------AKRSPKGKLPFIELNGEKIADSEL 65 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCC-c-EEeecCc---------ccCCCCCCCCEEEECCEEEcCHHH
Confidence 4566665 579999999999999965 3 3333321 134457889999999987766555
No 176
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.15 E-value=0.0026 Score=47.18 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=45.9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
.+.+|+.+.||+|.+++-+|.+.|+...++.+|.... .+++...+-...||++..||..+
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~----~~~~~~~nP~g~VPvL~~~g~~l 69 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNL----PQDLIDLNPYQSVPTLVDRELTL 69 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccC----CHHHHHhCCCCCCCEEEECCEEe
Confidence 4789999999999999999999996533556665332 23466677788999999888644
No 177
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.12 E-value=0.0088 Score=41.92 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=17.3
Q ss_pred cCCCcccEEEECCEEEeccCC
Q 032253 96 VGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 96 ~g~~~vP~vfi~g~~igg~~e 116 (144)
.|..++|+++|||+.+.|..+
T Consensus 132 ~~i~~tPt~~inG~~~~~~~~ 152 (162)
T PF13462_consen 132 LGITGTPTFFINGKYVVGPYT 152 (162)
T ss_dssp HT-SSSSEEEETTCEEETTTS
T ss_pred cCCccccEEEECCEEeCCCCC
Confidence 366899999999999987777
No 178
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.12 E-value=0.0013 Score=51.99 Aligned_cols=58 Identities=24% Similarity=0.470 Sum_probs=41.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC------Ce-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE-CCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQ------PF-VVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~------~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~g~~i 111 (144)
.|-|+.|||.+|++..+++++.|.. |. +-+.|-..- ..+....|.++.|+|.+ .|.+.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-----~aiAnefgiqGYPTIk~~kgd~a 112 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-----PAIANEFGIQGYPTIKFFKGDHA 112 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-----hhhHhhhccCCCceEEEecCCee
Confidence 7778999999999999999998732 11 333344433 34777889999999944 44444
No 179
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.08 E-value=0.0047 Score=42.23 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=42.1
Q ss_pred EEEEec--CCCh---hHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCC--cccEEEE--CCE
Q 032253 49 IVIFSK--SYCP---YCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRR--TVPQIFV--NGE 109 (144)
Q Consensus 49 Vvvf~~--~~Cp---~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~--~vP~vfi--~g~ 109 (144)
+|.|.. |||. .|.+...-+........+-++|.+..++.....|.+.+|++ ++|++.+ +|.
T Consensus 22 lV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~ 91 (116)
T cd03007 22 LVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGD 91 (116)
T ss_pred EEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCC
Confidence 677999 8998 88888766655431222678888543332235689999999 9999855 663
No 180
>smart00594 UAS UAS domain.
Probab=97.07 E-value=0.0041 Score=42.47 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=46.8
Q ss_pred hhHHHHHHhhhcCCc--EEEEecCCChhHHHHHH-HHHhcCC-----CCe-EEEEeCCCCHHHHHHHHHHHcCCCcccEE
Q 032253 34 HSVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKR-IFADLNE-----QPF-VVELDLRDDGAQIQYILLDLVGRRTVPQI 104 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~--Vvvf~~~~Cp~C~~~~~-~L~~~~~-----~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~v 104 (144)
.+..++++.+.+..| ++.+..+||++|....+ +|..-.+ +.+ +..+|+..... ..+...++..++|++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg---~~l~~~~~~~~~P~~ 90 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG---QRVSQFYKLDSFPYV 90 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH---HHHHHhcCcCCCCEE
Confidence 466677777776644 66677899999997654 4433221 122 44567765432 358888899999999
Q ss_pred EE
Q 032253 105 FV 106 (144)
Q Consensus 105 fi 106 (144)
.+
T Consensus 91 ~~ 92 (122)
T smart00594 91 AI 92 (122)
T ss_pred EE
Confidence 77
No 181
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.06 E-value=0.0057 Score=41.64 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=18.5
Q ss_pred CcEEEEecCCChhHHHHHHHHHhc
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
.-|+.|+.+|||.|.+....|+++
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHHH
Confidence 347778999999999776666554
No 182
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.05 E-value=0.0032 Score=38.58 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=44.6
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
.+|..+.|+.|.+++.+|...|+......+|..... ..++...+....+|.+..+|..+.....
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~---~~~~~~~~p~~~vP~L~~~~~~l~es~a 65 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWP---ELDLKPTLPFGQLPVLEIDGKKLTQSNA 65 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhh---hhhhccCCcCCCCCEEEECCEEEEecHH
Confidence 577889999999999999999965323444432211 2235566778899999988876654443
No 183
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.04 E-value=0.0027 Score=40.10 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.5
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
|++|+.+.||+|..+.+.+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5789999999999999988876
No 184
>PTZ00102 disulphide isomerase; Provisional
Probab=97.01 E-value=0.0009 Score=55.23 Aligned_cols=53 Identities=13% Similarity=0.390 Sum_probs=38.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCC-e-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN----EQP-F-VVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~----~~~-~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
++.|+.+||++|+.....+.++. ... . +..+|.+.+.. ..+.++.+++|++++
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-----~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-----PLEEFSWSAFPTILF 437 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-----chhcCCCcccCeEEE
Confidence 66788999999999998887753 111 2 56778766532 345668899999976
No 185
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.00 E-value=0.0023 Score=39.68 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=43.1
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC-CEEE
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHI 111 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-g~~i 111 (144)
.+|+.+.||+|.+++-+|...++......+|.... ...+++...+....+|++..+ |..+
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~--~~~~~~~~~nP~~~vP~L~~~~g~~l 62 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE--NKTPEFLKKFPLGKVPAFEGADGFCL 62 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc--cCCHHHHHhCCCCCCCEEEcCCCCEE
Confidence 47888999999999999999996533455555321 112456677788899999985 6544
No 186
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.99 E-value=0.0016 Score=45.36 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=28.0
Q ss_pred ccchhHHHHHHhhhcCCc--EEEEecCCChhHHHHHHHH
Q 032253 31 EADHSVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKRIF 67 (144)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~--Vvvf~~~~Cp~C~~~~~~L 67 (144)
.+..+..+++..+.+.++ ++.|+++|||+|++.++..
T Consensus 7 ~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 7 IWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 444577788888887776 4458899999999887643
No 187
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.94 E-value=0.0019 Score=42.81 Aligned_cols=24 Identities=17% Similarity=0.570 Sum_probs=19.3
Q ss_pred CcEEEEecCCChhHHHHHHHHHhc
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
.-++.|+.+|||.|++....+.++
T Consensus 23 ~vvl~F~~~wC~~C~~~~p~l~~~ 46 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLLPVIRSI 46 (114)
T ss_pred eEEEEEECCCCcchHhHhHHHHHH
Confidence 347778999999999887777665
No 188
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.93 E-value=0.003 Score=47.24 Aligned_cols=68 Identities=29% Similarity=0.469 Sum_probs=37.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCCeEEEEeCCC-----C----HH--HHHHHHHHHcCC--CcccEEEECCE-E
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRD-----D----GA--QIQYILLDLVGR--RTVPQIFVNGE-H 110 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~-----~----~~--~~~~~l~~~~g~--~~vP~vfi~g~-~ 110 (144)
|.+||..+|+.|..|-++|.++. +.+.-+.+|-.+ | ++ .-|....+..|. -.+|+++|||+ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 67999999999999999998874 222234554322 2 11 112333334443 35799999998 5
Q ss_pred EeccCC
Q 032253 111 IGGADG 116 (144)
Q Consensus 111 igg~~e 116 (144)
.+|.+.
T Consensus 82 ~~g~~~ 87 (202)
T PF06764_consen 82 RVGSDR 87 (202)
T ss_dssp EETT-H
T ss_pred eeccCH
Confidence 567665
No 189
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.88 E-value=0.0035 Score=43.03 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=27.5
Q ss_pred CCChhHHHHHHHHHhc----CCCCeEEEEeCC-----CCHHHHHHHHHH--HcCCCcccEEEE
Q 032253 55 SYCPYCLRAKRIFADL----NEQPFVVELDLR-----DDGAQIQYILLD--LVGRRTVPQIFV 106 (144)
Q Consensus 55 ~~Cp~C~~~~~~L~~~----~~~~~~~~id~~-----~~~~~~~~~l~~--~~g~~~vP~vfi 106 (144)
+|||+|+.+...+.+. .....++.+.+. .++. ..++. .....++|+++-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~---n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPN---NPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TT---SHHHH--CC---SSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCC---CCceEcceeeeeecceEEE
Confidence 7999999998776653 222235666653 2221 13444 467789999987
No 190
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.88 E-value=0.0031 Score=42.33 Aligned_cols=31 Identities=13% Similarity=0.389 Sum_probs=23.9
Q ss_pred EecCCChhHHHHHHHHHhcCCCCeEEEEeCCCC
Q 032253 52 FSKSYCPYCLRAKRIFADLNEQPFVVELDLRDD 84 (144)
Q Consensus 52 f~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~ 84 (144)
|+.+.|..|++|.++|++.++. |..+|+..+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~--~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIE--YEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT----EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHcCCC--eEeehhhhC
Confidence 7899999999999999999976 578888664
No 191
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.85 E-value=0.002 Score=49.81 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=47.3
Q ss_pred hHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhc----CCCCeEEEEeCCCCHH-----H-HHHHHHHHcCCCcccEE
Q 032253 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRDDGA-----Q-IQYILLDLVGRRTVPQI 104 (144)
Q Consensus 35 ~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~----~~~~~~~~id~~~~~~-----~-~~~~l~~~~g~~~vP~v 104 (144)
...+.++.+.+..-+++|.++.||+|++.-.+++.+ |+. ++-++++..+- . .-..+.+..|...+|.+
T Consensus 140 ~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~--v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal 217 (256)
T TIGR02739 140 QKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGIS--VIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPAL 217 (256)
T ss_pred HHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCe--EEEEecCCCCCCCCCCccCChHHHHhcCCccCceE
Confidence 345566666777889999999999999988877555 443 45555543210 0 00124556688999999
Q ss_pred EE
Q 032253 105 FV 106 (144)
Q Consensus 105 fi 106 (144)
|+
T Consensus 218 ~L 219 (256)
T TIGR02739 218 YL 219 (256)
T ss_pred EE
Confidence 88
No 192
>PRK10387 glutaredoxin 2; Provisional
Probab=96.85 E-value=0.0047 Score=45.39 Aligned_cols=61 Identities=21% Similarity=0.444 Sum_probs=40.7
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEE-ECCEEEeccC
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF-VNGEHIGGAD 115 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf-i~g~~igg~~ 115 (144)
.+|+.+.||+|.+++-+|...|+. | ..++++.... ... ....+...||++. .||..+....
T Consensus 2 ~Ly~~~~sp~~~kv~~~L~~~gi~-y-~~~~~~~~~~--~~~-~~~~p~~~VPvL~~~~g~~l~eS~ 63 (210)
T PRK10387 2 KLYIYDHCPFCVKARMIFGLKNIP-V-ELIVLANDDE--ATP-IRMIGQKQVPILQKDDGSYMPESL 63 (210)
T ss_pred EEEeCCCCchHHHHHHHHHHcCCC-e-EEEEcCCCch--hhH-HHhcCCcccceEEecCCeEecCHH
Confidence 578899999999999999999965 3 3344432211 111 3455677999995 5676654433
No 193
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=96.83 E-value=0.0046 Score=47.01 Aligned_cols=68 Identities=31% Similarity=0.473 Sum_probs=43.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCe----EEEEeCC-----CCH------HHHHHHHHHHcCCC--cccEEEECCE-E
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPF----VVELDLR-----DDG------AQIQYILLDLVGRR--TVPQIFVNGE-H 110 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~----~~~id~~-----~~~------~~~~~~l~~~~g~~--~vP~vfi~g~-~ 110 (144)
|.+||..+|..|..+-+.|.++...+- -+.+|-+ .|. .+-|.......+.+ ..|++++||+ +
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr~~ 124 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGRVH 124 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeechhh
Confidence 678999999999999999999864442 3344432 111 11133344444544 5699999998 4
Q ss_pred EeccCC
Q 032253 111 IGGADG 116 (144)
Q Consensus 111 igg~~e 116 (144)
.-|-+.
T Consensus 125 ~~Gad~ 130 (261)
T COG5429 125 ANGADP 130 (261)
T ss_pred hcCCCH
Confidence 455554
No 194
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.83 E-value=0.0084 Score=36.80 Aligned_cols=62 Identities=10% Similarity=-0.012 Sum_probs=44.8
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEe
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~ig 112 (144)
.+|+.+.+|+|++++..|.+.++...+.+++..... ...+.+.+.+....+|.+..+|..+.
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~nP~~~vP~L~~~~~~l~ 63 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGG-LDTPEFLAMNPNGRVPVLEDGDFVLW 63 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecccccc-ccCHHHHhhCCCCCCCEEEECCEEEE
Confidence 578889999999999999999965334555543221 11345667778889999988886553
No 195
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.82 E-value=0.00095 Score=51.35 Aligned_cols=69 Identities=9% Similarity=0.111 Sum_probs=45.8
Q ss_pred HHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhc----CCCCeEEEEeCCCCHH-HH-----HHHHHHHcCCCcccEEE
Q 032253 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRDDGA-QI-----QYILLDLVGRRTVPQIF 105 (144)
Q Consensus 36 ~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~----~~~~~~~~id~~~~~~-~~-----~~~l~~~~g~~~vP~vf 105 (144)
..+.++.+.+...+++|+++.||||++.-.+++.+ |+. ++-+.++..+. .+ -.......|...+|.+|
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~--v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~ 211 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLS--VIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALM 211 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCe--EEEEecCCCCCCCCCCCccChhHHHhcCCcccceEE
Confidence 34456666777889999999999999988887766 433 44555432110 00 01133567889999999
Q ss_pred E
Q 032253 106 V 106 (144)
Q Consensus 106 i 106 (144)
+
T Consensus 212 L 212 (248)
T PRK13703 212 L 212 (248)
T ss_pred E
Confidence 8
No 196
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.80 E-value=0.01 Score=50.49 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=45.1
Q ss_pred HHHhhhcCCc---EE-EEecCCChhHHHHHHHHHh-c----CCCC-eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 39 FVQNSIFSNK---IV-IFSKSYCPYCLRAKRIFAD-L----NEQP-FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 39 ~~~~~~~~~~---Vv-vf~~~~Cp~C~~~~~~L~~-~----~~~~-~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
+++.+.++++ |. =|+.+||-.|+..+++.-. . .... ...+.|...+..++++.|++ +|.-++|++++
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~-~~~~G~P~~~f 540 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKR-LGVFGVPTYLF 540 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHH-cCCCCCCEEEE
Confidence 4555544444 33 3999999999988875432 1 1112 27889998877776665555 58889999976
No 197
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.0029 Score=43.31 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=40.9
Q ss_pred hhHHHHHHhhhcCCcEEE-Eec--------CCChhHHHHHHHHHhc----CCCCeEEEEeCCC-----CHHHHHHHHHHH
Q 032253 34 HSVSAFVQNSIFSNKIVI-FSK--------SYCPYCLRAKRIFADL----NEQPFVVELDLRD-----DGAQIQYILLDL 95 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~Vvv-f~~--------~~Cp~C~~~~~~L~~~----~~~~~~~~id~~~-----~~~~~~~~l~~~ 95 (144)
++..+.++...+..++.+ |+. ||||+|.+|..++.+. .....++.+++-+ ++. ..++.-
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~---n~FR~d 89 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPA---NPFRKD 89 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCC---CccccC
Confidence 344455555544444544 432 7999999998877653 2222366776632 322 234444
Q ss_pred cCC-CcccEEEECC
Q 032253 96 VGR-RTVPQIFVNG 108 (144)
Q Consensus 96 ~g~-~~vP~vfi~g 108 (144)
.+. ..+|++.=-+
T Consensus 90 ~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 90 PGILTAVPTLLRWK 103 (128)
T ss_pred CCceeecceeeEEc
Confidence 455 7789886533
No 198
>PRK15113 glutathione S-transferase; Provisional
Probab=96.73 E-value=0.0085 Score=44.50 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=47.1
Q ss_pred CcEEEEecC--CChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 47 NKIVIFSKS--YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 47 ~~Vvvf~~~--~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
..+.+|+.+ .||+|++++-+|.+.++...++.+|..... ...+++.+.+-...||++..||..+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~-~~~~~~~~~nP~g~VP~L~~~~~~l 69 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGE-HLQPTYQGYSLTRRVPTLQHDDFEL 69 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCcc-ccCHHHHhcCCCCCCCEEEECCEEE
Confidence 347788865 699999999999999965435666665431 1234566777788999999888644
No 199
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.63 E-value=0.014 Score=40.47 Aligned_cols=63 Identities=25% Similarity=0.515 Sum_probs=39.3
Q ss_pred cEEEEecC-CChhHHHHHHHHHhc----CCCC-eEEEEeCCCCHHHHHHHH-----------------HHHcCCC-----
Q 032253 48 KIVIFSKS-YCPYCLRAKRIFADL----NEQP-FVVELDLRDDGAQIQYIL-----------------LDLVGRR----- 99 (144)
Q Consensus 48 ~Vvvf~~~-~Cp~C~~~~~~L~~~----~~~~-~~~~id~~~~~~~~~~~l-----------------~~~~g~~----- 99 (144)
-|+.|+.+ |||.|+.-...++++ +... .++-+..+.++. .++.+ .+.+|..
T Consensus 31 ~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 109 (146)
T PF08534_consen 31 VVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKKYGINFPVLSDPDGALAKALGVTIMEDP 109 (146)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCT
T ss_pred EEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH-HHHHHHhhCCCceEEechHHHHHHHhCCcccccc
Confidence 36778888 999999777666655 2121 256666666644 34333 3344555
Q ss_pred ----cccEEEE---CCEEE
Q 032253 100 ----TVPQIFV---NGEHI 111 (144)
Q Consensus 100 ----~vP~vfi---~g~~i 111 (144)
.+|++++ +|+.+
T Consensus 110 ~~~~~~P~~~lId~~G~V~ 128 (146)
T PF08534_consen 110 GNGFGIPTTFLIDKDGKVV 128 (146)
T ss_dssp TTTSSSSEEEEEETTSBEE
T ss_pred ccCCeecEEEEEECCCEEE
Confidence 7898866 77754
No 200
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.61 E-value=0.019 Score=52.46 Aligned_cols=64 Identities=31% Similarity=0.442 Sum_probs=39.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----CCCe-EEEE-----eCCCCHHHHHH-----------------HHHHHcCCCcc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN----EQPF-VVEL-----DLRDDGAQIQY-----------------ILLDLVGRRTV 101 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~-~~~i-----d~~~~~~~~~~-----------------~l~~~~g~~~v 101 (144)
++-|+.+|||.|+...+.|+++. ...+ ++-+ |...+.+.++. .+.+.++..++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~i 503 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSSW 503 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCcc
Confidence 66799999999998888777653 1112 3333 22223333222 24455688899
Q ss_pred cEEEE---CCEEEe
Q 032253 102 PQIFV---NGEHIG 112 (144)
Q Consensus 102 P~vfi---~g~~ig 112 (144)
|++++ +|+.++
T Consensus 504 Pt~ilid~~G~iv~ 517 (1057)
T PLN02919 504 PTFAVVSPNGKLIA 517 (1057)
T ss_pred ceEEEECCCCeEEE
Confidence 99977 677664
No 201
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.60 E-value=0.011 Score=42.31 Aligned_cols=62 Identities=24% Similarity=0.529 Sum_probs=39.7
Q ss_pred EEEecCCChhHHHHHHHH----HhcCC--CCe-EEEEeCCCCHHHHHH--------------------HHHHHcCCCccc
Q 032253 50 VIFSKSYCPYCLRAKRIF----ADLNE--QPF-VVELDLRDDGAQIQY--------------------ILLDLVGRRTVP 102 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L----~~~~~--~~~-~~~id~~~~~~~~~~--------------------~l~~~~g~~~vP 102 (144)
+.|+..|||.|+..-..| ++... .++ ++-++.+.+.+++.+ .+.+.+++.++|
T Consensus 38 lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP 117 (157)
T KOG2501|consen 38 LYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIP 117 (157)
T ss_pred EEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCc
Confidence 357779999999654444 44431 233 666666666555543 344466778999
Q ss_pred EEEE---CCEEE
Q 032253 103 QIFV---NGEHI 111 (144)
Q Consensus 103 ~vfi---~g~~i 111 (144)
.+.+ +|+.|
T Consensus 118 ~l~i~~~dG~~v 129 (157)
T KOG2501|consen 118 ALVILKPDGTVV 129 (157)
T ss_pred eeEEecCCCCEe
Confidence 9887 67655
No 202
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0083 Score=50.31 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=46.8
Q ss_pred HHHHHhhhcCCcE--EEEecCCChhHHHHH-------HHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE-
Q 032253 37 SAFVQNSIFSNKI--VIFSKSYCPYCLRAK-------RIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV- 106 (144)
Q Consensus 37 ~~~~~~~~~~~~V--vvf~~~~Cp~C~~~~-------~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi- 106 (144)
.+...+.+..+.+ |-|++|||.+|.+.. ..|.+.+-.....++|-..+ ..+...++++++|++.|
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-----~~~~~~y~v~gyPTlkiF 106 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-----SDLASKYEVRGYPTLKIF 106 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-----hhhHhhhcCCCCCeEEEE
Confidence 4455666777774 568899999998443 34444431112677887765 24778899999999955
Q ss_pred -CCEE
Q 032253 107 -NGEH 110 (144)
Q Consensus 107 -~g~~ 110 (144)
||+.
T Consensus 107 rnG~~ 111 (493)
T KOG0190|consen 107 RNGRS 111 (493)
T ss_pred ecCCc
Confidence 7874
No 203
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.52 E-value=0.04 Score=40.85 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=16.8
Q ss_pred cEEEEecCCChhHHHHHHHHHhc
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
-++.|+.+|||.|++-...|.++
T Consensus 42 vlv~fwAswC~~C~~e~p~L~~l 64 (199)
T PTZ00056 42 LMITNSASKCGLTKKHVDQMNRL 64 (199)
T ss_pred EEEEEECCCCCChHHHHHHHHHH
Confidence 36679999999998655555444
No 204
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.45 E-value=0.016 Score=35.84 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=42.3
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC-CEEEec
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGG 113 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-g~~igg 113 (144)
.+|+.+.| .|.+++.+|...++...+..+|.... +...+++.+.+....+|.+..+ |..+..
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~~~vP~l~~~~g~~l~e 64 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTK-TQKGADYLAINPKGQVPALVLDDGEVLTE 64 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCCCCCCEEEECCCcEEEc
Confidence 46777766 48889999999996533556666432 1113456678888999999887 655443
No 205
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=96.41 E-value=0.015 Score=44.43 Aligned_cols=58 Identities=21% Similarity=0.151 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 55 ~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
..||+|++++-.|...++...++.+|....+ +++.+.+-...+|++..+|..+..-..
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~----~~fl~inP~g~vPvL~~~g~~l~ES~a 74 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKP----EDLQNLAPGTHPPFLTYNTEVKTDVNK 74 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCC----HHHHHHCcCCCCCEEEECCEEeecHHH
Confidence 6799999999999999965447788877543 346677778899999888876654333
No 206
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.30 E-value=0.018 Score=35.56 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=42.9
Q ss_pred cCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccC
Q 032253 54 KSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGAD 115 (144)
Q Consensus 54 ~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~ 115 (144)
...||+|++++-+|...++......++..... ..+++.+.+....+|.+..+|..+....
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~--~~~~~~~~nP~g~vP~L~~~g~~l~eS~ 66 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPD--TRARILEFSPTGKVPVLVDGGIVVWDSL 66 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCcc--ccHHHHhhCCCCcCCEEEECCEEEEcHH
Confidence 47899999999999999975334555554321 1345677777899999998887655433
No 207
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.28 E-value=0.018 Score=42.76 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=17.8
Q ss_pred cCCcEEEEecCCChhHHHHHHH
Q 032253 45 FSNKIVIFSKSYCPYCLRAKRI 66 (144)
Q Consensus 45 ~~~~Vvvf~~~~Cp~C~~~~~~ 66 (144)
....|+.|..-+||+|......
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~ 58 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEV 58 (207)
T ss_pred CCCeEEEEeCCCCccHHHhccc
Confidence 3456999999999999987653
No 208
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.05 Score=40.95 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=47.1
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE-eccCC
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI-GGADG 116 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i-gg~~e 116 (144)
...|-+|+..+|-.|....+.|+..|.-+.+.-+|-...+ .+.-..+.-++|.||+||+.+ ++.-|
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~-----f~~~~~~V~SvP~Vf~DGel~~~dpVd 76 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPP-----FLAFEKGVISVPSVFIDGELVYADPVD 76 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCCh-----HHHhhcceeecceEEEcCeEEEcCCCC
Confidence 3458899999999999999999998855542333333222 133344688999999999976 55555
No 209
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=96.12 E-value=0.073 Score=34.61 Aligned_cols=67 Identities=18% Similarity=0.394 Sum_probs=35.7
Q ss_pred EEEecC-CChhHH------HHHHHHHhc-----CCCCe-EEEEeCCCCHH--HHHHHHHHHcC-CCcccEEEECCEEEe-
Q 032253 50 VIFSKS-YCPYCL------RAKRIFADL-----NEQPF-VVELDLRDDGA--QIQYILLDLVG-RRTVPQIFVNGEHIG- 112 (144)
Q Consensus 50 vvf~~~-~Cp~C~------~~~~~L~~~-----~~~~~-~~~id~~~~~~--~~~~~l~~~~g-~~~vP~vfi~g~~ig- 112 (144)
+||++. -|+.|- ....+|+.. ...++ +..+|+...++ +-++...+... .--.|.|.++|+.+|
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 467764 487774 555566543 34455 77888865543 22333334333 345799999999997
Q ss_pred ccCC
Q 032253 113 GADG 116 (144)
Q Consensus 113 g~~e 116 (144)
|.-.
T Consensus 81 Gnp~ 84 (93)
T PF07315_consen 81 GNPQ 84 (93)
T ss_dssp SS--
T ss_pred CCcc
Confidence 4444
No 210
>PLN02378 glutathione S-transferase DHAR1
Probab=96.10 E-value=0.024 Score=42.18 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=40.9
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 55 ~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
..||+|+++.-+|...++...++.+|+...+ +++.+.+-...||++..||..+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~----~~~l~inP~G~VPvL~~~~~~l 70 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKP----QWFLDISPQGKVPVLKIDDKWV 70 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCC----HHHHHhCCCCCCCEEEECCEEe
Confidence 5699999999999999965446777875433 2466777788999998888644
No 211
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.036 Score=42.24 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=49.4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHc-CCCcccEEEECCEEEec
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLV-GRRTVPQIFVNGEHIGG 113 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~-g~~~vP~vfi~g~~igg 113 (144)
..|.+|+.-.|||.++++-.|+..++.+.++++|...-++ -+.+.+ =...||.+..||+.|.-
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~----~ll~~np~hkKVPvL~Hn~k~i~E 71 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSE----WLLEKNPVHKKVPVLEHNGKPICE 71 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCH----HHHHhccccccCCEEEECCceehh
Confidence 5699999999999999999999999765588888865322 133443 46789999999998653
No 212
>PLN02473 glutathione S-transferase
Probab=96.07 E-value=0.029 Score=41.39 Aligned_cols=65 Identities=14% Similarity=0.015 Sum_probs=46.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEecc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGA 114 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~ 114 (144)
..+|+.+.||+|++++-+|.+.++...++.+|....... .+++...+....+|++..||..+...
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~-~~~~~~~nP~g~vP~L~~~g~~l~ES 67 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQK-KPEHLLRQPFGQVPAIEDGDLKLFES 67 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccC-CHHHHhhCCCCCCCeEEECCEEEEeh
Confidence 468888999999999999999996543566666432111 22344566778999999888766433
No 213
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.03 E-value=0.013 Score=47.87 Aligned_cols=51 Identities=18% Similarity=0.415 Sum_probs=36.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcC----C-C-C-eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN----E-Q-P-FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~----~-~-~-~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
++.|+++||+.|+...+.+.++. . . . .+..+|.+.+. +.. ++..++|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~------~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND------VPP-FEVEGFPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc------cCC-CCccccCEEEE
Confidence 66799999999998888776652 2 1 1 26778887652 223 67889999987
No 214
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.00 E-value=0.034 Score=34.03 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=43.3
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
.+|+.+. +.|.+++.+|...++......+|...... ..+++.+.+....+|.+..+|..+.....
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~g~~l~es~a 66 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQ-APPEYLAINPLGKVPVLVDGDLVLTESAA 66 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCcc-CCHHHHhcCCCCCCCEEEECCEEEEcHHH
Confidence 3566665 67899999999999653355566532111 12346667778899999988876655444
No 215
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.96 E-value=0.049 Score=39.38 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=38.0
Q ss_pred CCccchhHHHHHHhhhcCCc--EEEEecCCChhHHHHHH-HHHhcCC-----CCe-EEEEeCCCCHHH---HHHHHHHHc
Q 032253 29 ATEADHSVSAFVQNSIFSNK--IVIFSKSYCPYCLRAKR-IFADLNE-----QPF-VVELDLRDDGAQ---IQYILLDLV 96 (144)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~--Vvvf~~~~Cp~C~~~~~-~L~~~~~-----~~~-~~~id~~~~~~~---~~~~l~~~~ 96 (144)
...+-.-..++++.+.+.++ ++-++.+||++|+.+.+ .+..-.+ ..| -+.+|.++.++- .+......+
T Consensus 19 ~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~ 98 (163)
T PF03190_consen 19 PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMS 98 (163)
T ss_dssp SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhc
Confidence 33333433455566555555 33466899999997654 3332211 112 356666655442 112233445
Q ss_pred CCCcccEEEE---CCEEE
Q 032253 97 GRRTVPQIFV---NGEHI 111 (144)
Q Consensus 97 g~~~vP~vfi---~g~~i 111 (144)
|..+.|..++ +|+.+
T Consensus 99 ~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 99 GSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp S---SSEEEEE-TTS-EE
T ss_pred CCCCCCceEEECCCCCee
Confidence 7888998876 78866
No 216
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=95.90 E-value=0.032 Score=43.25 Aligned_cols=53 Identities=17% Similarity=0.339 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 55 ~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
-+||+|++++-+|.+.++...++.+|....++ ++.+.+-...+|++..+|..+
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~----~fl~iNP~GkVPvL~~d~~~L 123 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPE----WFLKISPEGKVPVVKLDEKWV 123 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCH----HHHhhCCCCCCCEEEECCEEE
Confidence 45999999999999999653366777755432 355667778999999988655
No 217
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=0.015 Score=49.40 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=52.3
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC--CCCe-----EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE---------CCEE
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLN--EQPF-----VVELDLRDDGAQIQYILLDLVGRRTVPQIFV---------NGEH 110 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~--~~~~-----~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi---------~g~~ 110 (144)
..+|-|..+||++|+.....++++. +..+ +.-+|-..+. -..+-+.++++.+|++.. +|..
T Consensus 59 ~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~---N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~ 135 (606)
T KOG1731|consen 59 AKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE---NVKLCREFSVSGYPTLRYFPPDSQNKTDGSD 135 (606)
T ss_pred hHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh---hhhhHhhcCCCCCceeeecCCccccCcCCCc
Confidence 4588888999999999888887764 2221 4455654432 235777889999999977 2677
Q ss_pred EeccCCcchhhhhhhHHHHH
Q 032253 111 IGGADGWSQLSLAHSTYLKA 130 (144)
Q Consensus 111 igg~~e~~~~~~~~~~~~~~ 130 (144)
+.|.+-..++.+.....+.+
T Consensus 136 ~~~~~~~~ei~~~l~~~la~ 155 (606)
T KOG1731|consen 136 VSGPVIPSEIRDQLIRTLAE 155 (606)
T ss_pred ccCCcchhhHHHHHHHHHHH
Confidence 77755433334443333333
No 218
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.87 E-value=0.081 Score=37.80 Aligned_cols=71 Identities=21% Similarity=0.409 Sum_probs=40.5
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhc----CCCC-eEEEEeCCC-------CHHHHHHHH-----------------HHHc
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADL----NEQP-FVVELDLRD-------DGAQIQYIL-----------------LDLV 96 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~----~~~~-~~~~id~~~-------~~~~~~~~l-----------------~~~~ 96 (144)
...++.|+.+|||.|......|.++ .... .++-+..+. +++.+++.. .+.+
T Consensus 26 k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 105 (171)
T cd02969 26 KALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAY 105 (171)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHc
Confidence 3447788899999998655544443 2111 144554432 344444333 3355
Q ss_pred CCCcccEEEE---CCEEE--eccCC
Q 032253 97 GRRTVPQIFV---NGEHI--GGADG 116 (144)
Q Consensus 97 g~~~vP~vfi---~g~~i--gg~~e 116 (144)
|...+|.+++ +|+.+ ++.++
T Consensus 106 ~v~~~P~~~lid~~G~v~~~~~~~~ 130 (171)
T cd02969 106 GAACTPDFFLFDPDGKLVYRGRIDD 130 (171)
T ss_pred CCCcCCcEEEECCCCeEEEeecccC
Confidence 6778898777 67655 54443
No 219
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.83 E-value=0.06 Score=39.68 Aligned_cols=27 Identities=4% Similarity=-0.075 Sum_probs=21.5
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcC
Q 032253 45 FSNKIVIFSKSYCPYCLRAKRIFADLN 71 (144)
Q Consensus 45 ~~~~Vvvf~~~~Cp~C~~~~~~L~~~~ 71 (144)
.+..++-|+.+|||.|+.-.+++.++.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~ 85 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIK 85 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHH
Confidence 334477899999999998888887764
No 220
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=95.83 E-value=0.016 Score=42.53 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=43.3
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEe
Q 032253 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~ig 112 (144)
+|+...||+|++++-+|...++......++.....+...+++.+.+....+|++..||..+.
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ 63 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLT 63 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEee
Confidence 67788999999999999999965334445542211111234667777889999999887554
No 221
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0089 Score=50.15 Aligned_cols=51 Identities=20% Similarity=0.440 Sum_probs=35.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC----CC--eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNE----QP--FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~----~~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
.+.|++|||++|.+..+++++++. .+ .+.++|...+.- .......+|+|+.
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~-------~~~~~~~fPTI~~ 444 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV-------PSLKVDGFPTILF 444 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC-------ccccccccceEEE
Confidence 667899999999999999988851 11 266777765421 1113556999988
No 222
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.018 Score=46.70 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=41.4
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcC----CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 45 FSNKIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 45 ~~~~Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
...-+++|..|||++|.+....+.++. ....+..+|.+.+. .+.+.++++++|++.+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~-----~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK-----DLCEKYGIQGFPTLKV 107 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH-----HHHHhcCCccCcEEEE
Confidence 345588999999999998877666552 11125566666553 4778899999999977
No 223
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.064 Score=40.24 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=46.5
Q ss_pred CChhHHHHHHHHHhcCCCCe-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 56 YCPYCLRAKRIFADLNEQPF-VVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 56 ~Cp~C~~~~~~L~~~~~~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
.||+|+++...|-..++ +| +.-+|+...++ .+...++.+.+|.+.+||+.+-..+.
T Consensus 20 dcpf~qr~~m~L~~k~~-~f~vttVd~~~kp~----~f~~~sp~~~~P~l~~d~~~~tDs~~ 76 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGV-PFKVTTVDLSRKPE----WFLDISPGGKPPVLKFDEKWVTDSDK 76 (221)
T ss_pred CChhHHHHHHHHHHcCC-CceEEEeecCCCcH----HHHhhCCCCCCCeEEeCCceeccHHH
Confidence 69999999998888775 44 88899988865 46778888999999999998866665
No 224
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.32 E-value=0.033 Score=35.34 Aligned_cols=53 Identities=23% Similarity=0.521 Sum_probs=33.6
Q ss_pred EecCCChhHHHHHHHHHhcC--CC--CeEEEEeCC-CCHHHHHHHHHHHcC--CCcccEEE--ECCE
Q 032253 52 FSKSYCPYCLRAKRIFADLN--EQ--PFVVELDLR-DDGAQIQYILLDLVG--RRTVPQIF--VNGE 109 (144)
Q Consensus 52 f~~~~Cp~C~~~~~~L~~~~--~~--~~~~~id~~-~~~~~~~~~l~~~~g--~~~vP~vf--i~g~ 109 (144)
|+++|||+|+.....+.+.. .. ..+..+|.. .+.. +...++ ...+|.+. .+|+
T Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~ 100 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD-----LAAEFGVAVRSIPTLLLFKDGK 100 (127)
T ss_pred EEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH-----HHHHHhhhhccCCeEEEEeCcc
Confidence 36999999999988887764 11 226778886 4432 233333 55668775 3554
No 225
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.053 Score=39.85 Aligned_cols=54 Identities=28% Similarity=0.616 Sum_probs=36.5
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCe---EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE-CCEEEe
Q 032253 51 IFSKSYCPYCLRAKRIFADLNEQPF---VVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIG 112 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~~~~~~~---~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~g~~ig 112 (144)
+|..+.||||.+++-++--.++ |. +..-|-++.+ .+..|...||.+.= +|++++
T Consensus 3 LYIYdHCPfcvrarmi~Gl~ni-pve~~vL~nDDe~Tp-------~rmiG~KqVPiL~Kedg~~m~ 60 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLKNI-PVELHVLLNDDEETP-------IRMIGQKQVPILQKEDGRAMP 60 (215)
T ss_pred eeEeccChHHHHHHHHhhccCC-ChhhheeccCcccCh-------hhhhcccccceEEccccccch
Confidence 4667999999999999988884 43 1222222222 24568899999876 676664
No 226
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.11 Score=39.28 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=20.5
Q ss_pred HHHHcCCCcccEEEECCEEEeccCC
Q 032253 92 LLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 92 l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+....|..++|++|++|+.++|.-+
T Consensus 207 ~a~~~gv~gTPt~~v~~~~~~g~~~ 231 (244)
T COG1651 207 LAQQLGVNGTPTFIVNGKLVPGLPD 231 (244)
T ss_pred HHHhcCCCcCCeEEECCeeecCCCC
Confidence 3445578999999999998888877
No 227
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.00 E-value=0.049 Score=37.12 Aligned_cols=35 Identities=14% Similarity=0.542 Sum_probs=27.6
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeC
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~ 81 (144)
..+++|++|.|+-|+-+..+|.++..++.+..+|+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNI 37 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNI 37 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEe
Confidence 35889999999999999999988864433556654
No 228
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=94.61 E-value=0.15 Score=31.84 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=38.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHH--HcCCCcccEEEECCEEEe
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLD--LVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~--~~g~~~vP~vfi~g~~ig 112 (144)
..+|+.+.++.|+.++.+|...++......+|..+ ... .... ......+|++..||..+.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~---~~~-~~~~~~~~~~g~vP~L~~~g~~l~ 63 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAE---DLE-KLKKDGSLMFQQVPMVEIDGMKLV 63 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHH---HHH-hhccccCCCCCCCCEEEECCEEEe
Confidence 46788888999999999999999653244555421 111 1111 112568999998886553
No 229
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.085 Score=38.85 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=43.6
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECC
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNG 108 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g 108 (144)
.+|+.+.+|+|.++.-.+.++++....+.+|... +...+++...+....||.+..+|
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~ 58 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDD 58 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCC
Confidence 4688888899999999999998543366777764 22245677888889999999875
No 230
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.49 E-value=0.16 Score=35.29 Aligned_cols=58 Identities=16% Similarity=0.490 Sum_probs=41.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcC--CCCe--EEEEeCCCCHHHHHHHHHHHcCCCcccEE--EECCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN--EQPF--VVELDLRDDGAQIQYILLDLVGRRTVPQI--FVNGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~--~~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi~g~~i 111 (144)
|+=|+++|-|.|-+.-.+|.+.. +..+ ++-+|+++-+ .+-+.++....|++ |++++++
T Consensus 27 ViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~-----~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 27 VIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVP-----DFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred EEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhh-----hhhhhhcccCCceEEEEEcCceE
Confidence 55599999999999999888763 3333 5666777543 35667777777776 5566655
No 231
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.33 E-value=0.17 Score=36.86 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=15.1
Q ss_pred EEEecCCChhHHHHHHHHHhc
Q 032253 50 VIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~ 70 (144)
++++.+|||.|++-...|+++
T Consensus 46 v~n~atwCp~C~~e~p~l~~l 66 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVEL 66 (183)
T ss_pred EEEECCCCCchHHHHHHHHHH
Confidence 456899999999755555443
No 232
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.17 E-value=0.21 Score=35.08 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=15.6
Q ss_pred EEEEecCCChhHHHHHHHHHh
Q 032253 49 IVIFSKSYCPYCLRAKRIFAD 69 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~ 69 (144)
|+.|+.+|||+|..-.+-|.+
T Consensus 26 vv~~~as~C~~c~~~~~~l~~ 46 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQE 46 (153)
T ss_pred EEEEeCCCCCchhhhHHHHHH
Confidence 678999999999765543333
No 233
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=94.14 E-value=0.17 Score=31.41 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=37.2
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 55 ~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+.+|+|-++..+|+..++. + ++....++. .+....+|.+..+|+.+++++.
T Consensus 14 s~sp~clk~~~~Lr~~~~~-~--~v~~~~n~~--------~sp~gkLP~l~~~~~~i~d~~~ 64 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAP-L--KVVPSNNPW--------RSPTGKLPALLTSGTKISGPEK 64 (73)
T ss_pred cCCHHHHHHHHHHHcCCCC-E--EEEecCCCC--------CCCCCccCEEEECCEEecChHH
Confidence 5689999999999998853 3 343333321 1224569999999999999988
No 234
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=94.08 E-value=0.28 Score=33.88 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCeEEEEeCCCCHHHHHH-----HHHHHcCCCcccEEEECCEEE--eccCC
Q 032253 63 AKRIFADLNEQPFVVELDLRDDGAQIQY-----ILLDLVGRRTVPQIFVNGEHI--GGADG 116 (144)
Q Consensus 63 ~~~~L~~~~~~~~~~~id~~~~~~~~~~-----~l~~~~g~~~vP~vfi~g~~i--gg~~e 116 (144)
+...|++.++. +..+++.+++..+.+ .+-+..|...+|.++|||+.+ |.+-.
T Consensus 32 ~~~~Lk~~gv~--v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv~~G~YPt 90 (123)
T PF06953_consen 32 DLDWLKEQGVE--VERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIVKTGRYPT 90 (123)
T ss_dssp HHHHHHHTT-E--EEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEEEESS---
T ss_pred HHHHHHhCCce--EEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEEEecCCCC
Confidence 34456666655 788899888776543 344455889999999999977 78877
No 235
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.1 Score=38.44 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=40.6
Q ss_pred EecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 52 FSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 52 f~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
|+++.|..- ++-.|.-.++.+.|.-+|.-++.++.-.++++..-...||++.|||..+
T Consensus 11 YWrSSCswR--VRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl 68 (217)
T KOG0868|consen 11 YWRSSCSWR--VRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTL 68 (217)
T ss_pred hhcccchHH--HHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEe
Confidence 556777654 4444444443333788888776554455788888889999999999866
No 236
>PLN02412 probable glutathione peroxidase
Probab=94.01 E-value=0.27 Score=35.22 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=15.3
Q ss_pred cEEEEecCCChhHHHHHHHHHh
Q 032253 48 KIVIFSKSYCPYCLRAKRIFAD 69 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~ 69 (144)
-|+.|+.+|||.|++-...|.+
T Consensus 32 vlv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 32 LLIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EEEEEeCCCCCChHHHHHHHHH
Confidence 3566889999999864444443
No 237
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.95 E-value=0.24 Score=42.21 Aligned_cols=58 Identities=5% Similarity=0.031 Sum_probs=41.2
Q ss_pred hcCCcEEEEecCCChhHHHHHHHHHhcC-CCCe--EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 44 IFSNKIVIFSKSYCPYCLRAKRIFADLN-EQPF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 44 ~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~-~~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
..+-.+++|+.+.|++|.+++++|+++. ..+. +..+|...+. .+.+.+|...+|.+.+
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~-----~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEP-----ESETLPKITKLPTVAL 425 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccch-----hhHhhcCCCcCCEEEE
Confidence 3334467788889999999999999875 3332 4455655442 3556778888999987
No 238
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=93.84 E-value=0.3 Score=37.34 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=17.4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhc
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
.-|+.|+.+|||.|..-...|.++
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L 124 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHL 124 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHH
Confidence 347789999999998655544443
No 239
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=93.80 E-value=0.19 Score=35.22 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=16.5
Q ss_pred cEEEEecCCChhHHHHHHHHHhc
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
-++.|+.+||| |..-...|+++
T Consensus 25 vvl~fwatwC~-C~~e~p~l~~l 46 (152)
T cd00340 25 LLIVNVASKCG-FTPQYEGLEAL 46 (152)
T ss_pred EEEEEEcCCCC-chHHHHHHHHH
Confidence 36679999999 98766666654
No 240
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.77 E-value=1 Score=30.19 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=42.6
Q ss_pred cCCcEEEEecCC-ChhHHHHHHHHHhc----CCCCeEEEEeCCCCHHHHHHHHHHHcCCC-cccEEEE--CCEEEe
Q 032253 45 FSNKIVIFSKSY-CPYCLRAKRIFADL----NEQPFVVELDLRDDGAQIQYILLDLVGRR-TVPQIFV--NGEHIG 112 (144)
Q Consensus 45 ~~~~Vvvf~~~~-Cp~C~~~~~~L~~~----~~~~~~~~id~~~~~~~~~~~l~~~~g~~-~vP~vfi--~g~~ig 112 (144)
...++++|=.++ ||-...|.+-+++. ....-++.+|+-++. .+-.++.+.+|+. -=||+++ ||+.+-
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R-~vSn~IAe~~~V~HeSPQ~ili~~g~~v~ 92 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYR-PVSNAIAEDFGVKHESPQVILIKNGKVVW 92 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGH-HHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCc-hhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence 356688887665 99999888777665 211116788987773 4467888999975 4588877 998773
No 241
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.70 E-value=0.71 Score=30.33 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=41.8
Q ss_pred cCCcEEEEecC-CChhHH------HHHHHHHhc-----CCCCe-EEEEeCCCCH--HHHHHHHHHHcC-CCcccEEEECC
Q 032253 45 FSNKIVIFSKS-YCPYCL------RAKRIFADL-----NEQPF-VVELDLRDDG--AQIQYILLDLVG-RRTVPQIFVNG 108 (144)
Q Consensus 45 ~~~~Vvvf~~~-~Cp~C~------~~~~~L~~~-----~~~~~-~~~id~~~~~--~~~~~~l~~~~g-~~~vP~vfi~g 108 (144)
...+++||+.. -|..|. ....+|+.. ...+| +..+|+.+.+ ++..+...+.-. .--.|.|.++|
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivved 82 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVED 82 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcc
Confidence 34568899975 477774 555666553 23445 7788885433 232333333322 34579999999
Q ss_pred EEEec
Q 032253 109 EHIGG 113 (144)
Q Consensus 109 ~~igg 113 (144)
+.++.
T Consensus 83 eiVae 87 (106)
T COG4837 83 EIVAE 87 (106)
T ss_pred eEeec
Confidence 99963
No 242
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=93.65 E-value=0.25 Score=36.50 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=40.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
+.+|+.+ +|+|++++-+|.+.++...++.+|.... +...+++...+-...||++..
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~iNP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKG-GQFRPEFLRISPNNKIPAIVD 57 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCccc-ccCCHHHHhhCcCCCCCEEEe
Confidence 3577766 6999999999999996533566776543 121345677778889999987
No 243
>PLN02395 glutathione S-transferase
Probab=93.52 E-value=0.35 Score=35.53 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=42.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEe
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~ig 112 (144)
+.+|+.+.| .+++++-+|.+.++......+|.... +...+++.+.+-...||++..+|..+.
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~~~~l~ 64 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKG-EHKQPEYLALQPFGVVPVIVDGDYKIF 64 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccC-CcCCHHHHhhCCCCCCCEEEECCEEEE
Confidence 678887665 47999999999996533556665422 111235667777889999988886443
No 244
>PRK11752 putative S-transferase; Provisional
Probab=93.50 E-value=0.24 Score=38.21 Aligned_cols=63 Identities=8% Similarity=0.161 Sum_probs=44.4
Q ss_pred hhcCCcEEEEecCCChhHHHHHHHHHhc------CCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC
Q 032253 43 SIFSNKIVIFSKSYCPYCLRAKRIFADL------NEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN 107 (144)
Q Consensus 43 ~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~------~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~ 107 (144)
....+.+.+|+. .||+|++++-+|.++ ++...++.+|.... +...+++.+.+-...||++..+
T Consensus 39 ~~~~~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~-~~~~~e~~~iNP~GkVP~Lv~~ 107 (264)
T PRK11752 39 PVGKHPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEG-DQFSSGFVEINPNSKIPALLDR 107 (264)
T ss_pred CCCCCCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccc-cccCHHHHhhCCCCCCCEEEeC
Confidence 455667889985 599999999999986 54322566666442 1223456677778899999875
No 245
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=93.42 E-value=0.21 Score=34.89 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=42.0
Q ss_pred EEEEecC--CChhHHHHHHHHHhcC--C---CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEecc
Q 032253 49 IVIFSKS--YCPYCLRAKRIFADLN--E---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGA 114 (144)
Q Consensus 49 Vvvf~~~--~Cp~C~~~~~~L~~~~--~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~igg~ 114 (144)
|+++..+ .+|.+.-+--+|.++. . ...+..+|++.++ ++...+|..++|++++ ||+.+|..
T Consensus 38 vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~-----~LA~~fgV~siPTLl~FkdGk~v~~i 107 (132)
T PRK11509 38 VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-----AIGDRFGVFRFPATLVFTGGNYRGVL 107 (132)
T ss_pred EEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH-----HHHHHcCCccCCEEEEEECCEEEEEE
Confidence 4444432 4777776666666553 1 1127888998874 4889999999999977 99988533
No 246
>PRK10357 putative glutathione S-transferase; Provisional
Probab=93.39 E-value=0.26 Score=35.91 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=40.7
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE-CCEE
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEH 110 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~g~~ 110 (144)
.+|+.+.||++++++-+|...++...+++++....+. .+.+.+....+|++.. ||..
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~----~~~~~nP~g~vP~L~~~~g~~ 59 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADN----GVAQYNPLGKVPALVTEEGEC 59 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCch----hhhhcCCccCCCeEEeCCCCe
Confidence 4788899999999999999999653344555543322 3445567789999985 5543
No 247
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.32 E-value=0.29 Score=38.94 Aligned_cols=66 Identities=29% Similarity=0.357 Sum_probs=43.9
Q ss_pred hhcCCc--EEEEecCCChhHHHHHHHHHhcC-----CCC--eEEEEeCCCCHHHHHHHHHHHcCCCcccEE--EECCEEE
Q 032253 43 SIFSNK--IVIFSKSYCPYCLRAKRIFADLN-----EQP--FVVELDLRDDGAQIQYILLDLVGRRTVPQI--FVNGEHI 111 (144)
Q Consensus 43 ~~~~~~--Vvvf~~~~Cp~C~~~~~~L~~~~-----~~~--~~~~id~~~~~~~~~~~l~~~~g~~~vP~v--fi~g~~i 111 (144)
++..+. .+-|+++|||+++..+.++.+.. ..| .++.-.++-+. +..+...|-...+|++ |.||...
T Consensus 9 il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~---e~~ia~ky~I~KyPTlKvfrnG~~~ 85 (375)
T KOG0912|consen 9 ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK---EDDIADKYHINKYPTLKVFRNGEMM 85 (375)
T ss_pred hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch---hhHHhhhhccccCceeeeeeccchh
Confidence 344455 44588999999999999887752 112 13444444443 3458888899999998 5588644
No 248
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.95 E-value=0.021 Score=43.46 Aligned_cols=68 Identities=16% Similarity=0.300 Sum_probs=47.7
Q ss_pred HHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcC-----CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEE
Q 032253 38 AFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEH 110 (144)
Q Consensus 38 ~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~-----~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~ 110 (144)
+..++..+..=.++|+.+|||.|..-...+..+. +...+-++|+..++. |.-++-....|+|+- ||.+
T Consensus 32 enw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-----LsGRF~vtaLptIYHvkDGeF 106 (248)
T KOG0913|consen 32 ENWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-----LSGRFLVTALPTIYHVKDGEF 106 (248)
T ss_pred cchhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-----cceeeEEEecceEEEeecccc
Confidence 3344444555588899999999999999998874 111267888877754 444555678899976 7773
No 249
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=92.85 E-value=0.98 Score=30.60 Aligned_cols=66 Identities=9% Similarity=0.181 Sum_probs=40.6
Q ss_pred hHHHHHHhhhcCCc-EEE-EecC----CChhHHHH------HHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCccc
Q 032253 35 SVSAFVQNSIFSNK-IVI-FSKS----YCPYCLRA------KRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVP 102 (144)
Q Consensus 35 ~~~~~~~~~~~~~~-Vvv-f~~~----~Cp~C~~~------~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP 102 (144)
+..++++.+.+..| ++| +..+ ||.+|+.+ .+++++ +.+..-.|+..... ..+....+.+++|
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~eg---~~la~~l~~~~~P 78 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAKPEG---YRVSQALRERTYP 78 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCChHH---HHHHHHhCCCCCC
Confidence 45677777777766 333 4455 57788643 333332 22255667765432 3477788999999
Q ss_pred EEEE
Q 032253 103 QIFV 106 (144)
Q Consensus 103 ~vfi 106 (144)
.+.+
T Consensus 79 ~~~~ 82 (116)
T cd02991 79 FLAM 82 (116)
T ss_pred EEEE
Confidence 9955
No 250
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=92.49 E-value=0.71 Score=28.48 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=41.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCC-CcccEEEEC-CEEEe
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR-RTVPQIFVN-GEHIG 112 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~-~~vP~vfi~-g~~ig 112 (144)
+..|..++ .|..++-+|...++......+|....... .+++....-. ..+|.+..+ |..+-
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~-~~e~~~~~p~~g~vP~l~~~~~~~l~ 65 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHK-SPEFLAINPMFGKVPALEDGDGFVLT 65 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGG-SHHHHHHTTTSSSSSEEEETTTEEEE
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEeccccccc-chhhhhcccccceeeEEEECCCCEEE
Confidence 55666666 88899999999996533566676544321 2556777677 899999999 77654
No 251
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.39 E-value=0.28 Score=32.51 Aligned_cols=25 Identities=20% Similarity=0.644 Sum_probs=16.5
Q ss_pred CCcEEEEecC-CChhHHHHHHHHHhc
Q 032253 46 SNKIVIFSKS-YCPYCLRAKRIFADL 70 (144)
Q Consensus 46 ~~~Vvvf~~~-~Cp~C~~~~~~L~~~ 70 (144)
+..++.|+.. |||.|......|.++
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~ 51 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNEL 51 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCccCccccccchhHHHHH
Confidence 3446667777 999997665555443
No 252
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=92.32 E-value=0.33 Score=33.33 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=16.7
Q ss_pred CCcEEEEecCC-ChhHHHHHHHHHhc
Q 032253 46 SNKIVIFSKSY-CPYCLRAKRIFADL 70 (144)
Q Consensus 46 ~~~Vvvf~~~~-Cp~C~~~~~~L~~~ 70 (144)
+.-|+.|+..| ||.|+.-...|.++
T Consensus 27 k~vvl~f~~~~~c~~C~~e~~~l~~~ 52 (143)
T cd03014 27 KVKVISVFPSIDTPVCATQTKRFNKE 52 (143)
T ss_pred CeEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 33466667777 79998776666544
No 253
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=91.97 E-value=0.54 Score=32.13 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=29.9
Q ss_pred CcEEEEe-cCCChhHHHHHHHHHhcC----CCCe-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 47 NKIVIFS-KSYCPYCLRAKRIFADLN----EQPF-VVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 47 ~~Vvvf~-~~~Cp~C~~~~~~L~~~~----~~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
..|++|. .+|||.|++-...|.++. .... ++-+..+.. +... .+.+..+. .+|.+.-
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~-~~~~-~~~~~~~~-~~p~~~D 87 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP-EKLE-AFDKGKFL-PFPVYAD 87 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH-HHHH-HHHHhcCC-CCeEEEC
Confidence 3455554 789999987666555542 0111 455555443 2222 34444443 5775443
No 254
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.80 E-value=0.16 Score=36.03 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=20.7
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhc
Q 032253 45 FSNKIVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 45 ~~~~Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
.+..|+.|+...||+|+.+...+..+
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHH
Confidence 45669999999999999887766544
No 255
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=90.84 E-value=1.1 Score=30.52 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=16.8
Q ss_pred CCcEEEEecCCChh-HHHHHHHHHh
Q 032253 46 SNKIVIFSKSYCPY-CLRAKRIFAD 69 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~-C~~~~~~L~~ 69 (144)
..-|+.|+.+|||+ |..-...|.+
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHH
Confidence 34577889999998 9755544443
No 256
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=90.40 E-value=0.7 Score=31.77 Aligned_cols=22 Identities=18% Similarity=0.517 Sum_probs=14.7
Q ss_pred EEEEe-cCCChhHHHHHHHHHhc
Q 032253 49 IVIFS-KSYCPYCLRAKRIFADL 70 (144)
Q Consensus 49 Vvvf~-~~~Cp~C~~~~~~L~~~ 70 (144)
|++|+ .+|||.|......|.++
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~~ 54 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRDS 54 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHHH
Confidence 45555 79999998665544443
No 257
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=90.30 E-value=0.3 Score=37.97 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=40.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCC---CCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEeccCC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGADG 116 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~---~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~igg~~e 116 (144)
||-|+.+++|.|..+-..|..+.. ...|..+.....+ +...+....+|++++ +|..++.+-.
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~------~~~~f~~~~LPtllvYk~G~l~~~~V~ 216 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP------ASENFPDKNLPTLLVYKNGDLIGNFVG 216 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC------TTTTS-TTC-SEEEEEETTEEEEEECT
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC------cccCCcccCCCEEEEEECCEEEEeEEe
Confidence 455778999999999988877741 1126777654432 223456678999977 8998877655
No 258
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=90.06 E-value=1.1 Score=31.22 Aligned_cols=60 Identities=15% Similarity=0.406 Sum_probs=38.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcC--CCCe--EEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLN--EQPF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~--~~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
|+=|+++|-|.|-+.-.+|.+.. +..+ ++-+|+++-++- ..+.+.+ .+..=.+|.+++++
T Consensus 24 ViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdf--n~~yel~-dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 24 VIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDF--NQMYELY-DPCTVMFFFRNKHM 87 (133)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCC--HHHTTS--SSEEEEEEETTEEE
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhh--hcccccC-CCeEEEEEecCeEE
Confidence 45699999999999999887763 3333 677788876552 2233333 33333345599987
No 259
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=0.77 Score=37.26 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=37.6
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcC--C--CCe--EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 45 FSNKIVIFSKSYCPYCLRAKRIFADLN--E--QPF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 45 ~~~~Vvvf~~~~Cp~C~~~~~~L~~~~--~--~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
....+++|..|||++|+...+.+.++. . ... +..+|.+. ...+....+...+|++.+
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~-----~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV-----HKSLASRLEVRGYPTLKL 224 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch-----HHHHhhhhcccCCceEEE
Confidence 334488899999999998877666653 1 111 33334331 335677888899999866
No 260
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=89.69 E-value=0.82 Score=32.70 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=16.3
Q ss_pred CcEEEEecCC-ChhHHHHHHHHHhc
Q 032253 47 NKIVIFSKSY-CPYCLRAKRIFADL 70 (144)
Q Consensus 47 ~~Vvvf~~~~-Cp~C~~~~~~L~~~ 70 (144)
.-|+.|+.+| ||.|..-...|.++
T Consensus 46 ~vvl~f~~s~~cp~C~~e~~~l~~~ 70 (167)
T PRK00522 46 RKVLNIFPSIDTGVCATSVRKFNQE 70 (167)
T ss_pred EEEEEEEcCCCCCccHHHHHHHHHH
Confidence 3466677788 99998655555443
No 261
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.58 E-value=0.68 Score=34.51 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=54.1
Q ss_pred hHHHHHHhhhcCCcEE-EEecCCChhHHHHHHHHHhcC---CCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEE--ECC
Q 032253 35 SVSAFVQNSIFSNKIV-IFSKSYCPYCLRAKRIFADLN---EQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIF--VNG 108 (144)
Q Consensus 35 ~~~~~~~~~~~~~~Vv-vf~~~~Cp~C~~~~~~L~~~~---~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vf--i~g 108 (144)
+-.+++....++.+|| -|+.+..--|+-+-.-|..+. +...|+.+|....| .|....+...+|+|. .||
T Consensus 73 ~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~P-----Flv~kL~IkVLP~v~l~k~g 147 (211)
T KOG1672|consen 73 SEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAP-----FLVTKLNIKVLPTVALFKNG 147 (211)
T ss_pred cHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCc-----eeeeeeeeeEeeeEEEEEcC
Confidence 3456666666676655 488999888887766555543 33347999988765 477888999999984 487
Q ss_pred E---EEeccCC
Q 032253 109 E---HIGGADG 116 (144)
Q Consensus 109 ~---~igg~~e 116 (144)
+ ++.||.+
T Consensus 148 ~~~D~iVGF~d 158 (211)
T KOG1672|consen 148 KTVDYVVGFTD 158 (211)
T ss_pred EEEEEEeeHhh
Confidence 7 4456655
No 262
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=89.09 E-value=2.3 Score=31.23 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=30.1
Q ss_pred CCcEEEEecCCChhHHHHH---HHHHhcCCCCe-EEEEeCC-------CCHHHHHHHHHHHcCCCcccEE
Q 032253 46 SNKIVIFSKSYCPYCLRAK---RIFADLNEQPF-VVELDLR-------DDGAQIQYILLDLVGRRTVPQI 104 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~---~~L~~~~~~~~-~~~id~~-------~~~~~~~~~l~~~~g~~~vP~v 104 (144)
..-+++|+++||++|.+.. ++.++++...+ ++-+..+ .+.+++++.++..+|. ++|.+
T Consensus 26 KvvLVvf~AS~C~~~~q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~ 94 (183)
T PRK10606 26 NVLLIVNVASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMF 94 (183)
T ss_pred CEEEEEEEeCCCCCcHHHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeE
Confidence 3447789999999997532 23333331222 3344322 2344555444434554 57755
No 263
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=88.88 E-value=0.91 Score=27.53 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=26.6
Q ss_pred EEECCEEEeccCCcchhhhhhhHHHHHHHHcCchhHh
Q 032253 104 IFVNGEHIGGADGWSQLSLAHSTYLKAAVLSGQLQQL 140 (144)
Q Consensus 104 vfi~g~~igg~~e~~~~~~~~~~~~~~~~~~g~L~~~ 140 (144)
||+||.++|=.++ ...+-..++++..+|.+.+.
T Consensus 1 VFlNG~~iG~~~~----p~~l~~~lr~~RR~g~i~~~ 33 (63)
T PF04566_consen 1 VFLNGVWIGIHSD----PEELVKTLRNLRRSGKISKE 33 (63)
T ss_dssp EEETTEEEEEESS----HHHHHHHHHHHHHTTSS-TT
T ss_pred CEECCEEEEEEcC----HHHHHHHHHHHhhccCCcce
Confidence 7999999999999 56666778899999987653
No 264
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=88.80 E-value=0.92 Score=30.70 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=15.0
Q ss_pred CcEEEEe-cCCChhHHHHHHHHHh
Q 032253 47 NKIVIFS-KSYCPYCLRAKRIFAD 69 (144)
Q Consensus 47 ~~Vvvf~-~~~Cp~C~~~~~~L~~ 69 (144)
..+++|+ ..|||.|.....-|.+
T Consensus 24 ~~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 24 WVVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred eEEEEEeCCCCCCcCHHHHHHHHH
Confidence 3455556 5799999876554444
No 265
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=88.79 E-value=2.7 Score=26.27 Aligned_cols=62 Identities=8% Similarity=-0.113 Sum_probs=36.3
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCH----HHHHHHH-HHHcCCCcccEEEECCEEEe
Q 032253 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDG----AQIQYIL-LDLVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~----~~~~~~l-~~~~g~~~vP~vfi~g~~ig 112 (144)
+|+-+.-+.|+.++.+|...++....+.+|..... ++..... ....-...+|++..||..+.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ 69 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLT 69 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEe
Confidence 34445557888999999999965335666664421 1111100 01114568999988886543
No 266
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=1.7 Score=32.72 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=48.5
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEe
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~ig 112 (144)
+..+|+.+..|.|+++...+...++...+..+|.... ++..+++.......+||++.-+|-.+-
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~g-e~~~pefl~~nP~~kVP~l~d~~~~l~ 65 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKG-EQKSPEFLKLNPLGKVPALEDGGLTLW 65 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecccc-ccCCHHHHhcCcCCCCCeEecCCeEEe
Confidence 4679999999999999999999996543455555443 344566778888889999988866543
No 267
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=88.13 E-value=1.7 Score=28.77 Aligned_cols=63 Identities=24% Similarity=0.415 Sum_probs=38.2
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCC-----CcccEEEECCE-EEeccCC
Q 032253 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGR-----RTVPQIFVNGE-HIGGADG 116 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~-----~~vP~vfi~g~-~igg~~e 116 (144)
||.-..||.|......+........+.-+|+..+... ++.+..|. .+.-.+.-+|+ ...|.+-
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A 69 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ---ALLASYGISPEDADSRLHLIDDGERVYRGSDA 69 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhh---hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHH
Confidence 4567899999999999999863233566677443221 11222221 23334433776 8888887
No 268
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.10 E-value=6.1 Score=31.61 Aligned_cols=53 Identities=25% Similarity=0.489 Sum_probs=37.0
Q ss_pred EEEEec----CCChhHHHHHHHHHhc--------CCCC----eEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 49 IVIFSK----SYCPYCLRAKRIFADL--------NEQP----FVVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 49 Vvvf~~----~~Cp~C~~~~~~L~~~--------~~~~----~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
|++|++ ..|+-|..+.+-++-. .... ++-.+|.++.++. .+..+..++|++++
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~-----Fq~l~ln~~P~l~~ 132 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV-----FQQLNLNNVPHLVL 132 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH-----HHHhcccCCCeEEE
Confidence 777876 5799999877644332 1111 4788899887654 34567889999988
No 269
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=87.53 E-value=1.1 Score=32.07 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHcCCCcccEEEECCEEEeccCC
Q 032253 94 DLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 94 ~~~g~~~vP~vfi~g~~igg~~e 116 (144)
...|..++|+++|||+.+-|.+.
T Consensus 161 ~~~gi~gvPtfvv~g~~~~G~~~ 183 (192)
T cd03022 161 IARGVFGVPTFVVDGEMFWGQDR 183 (192)
T ss_pred HHcCCCcCCeEEECCeeeccccc
Confidence 45589999999999999999998
No 270
>PTZ00057 glutathione s-transferase; Provisional
Probab=86.62 E-value=4.2 Score=29.77 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=41.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHH--HHHHH--HHcCCCcccEEEECCEEEe
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQI--QYILL--DLVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~--~~~l~--~~~g~~~vP~vfi~g~~ig 112 (144)
++.+|+.+..+.|+.++-+|...|+. | ..+.+....++. .+++. ..+-...+|.+.+||..+.
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~-y-e~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ 70 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIE-Y-TDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFA 70 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCC-e-EEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEe
Confidence 36788888899999999999999965 3 444443322211 11112 2456778999999986553
No 271
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=86.49 E-value=2.2 Score=28.89 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=12.6
Q ss_pred EEEEe-cCCChhHHHHHHHH
Q 032253 49 IVIFS-KSYCPYCLRAKRIF 67 (144)
Q Consensus 49 Vvvf~-~~~Cp~C~~~~~~L 67 (144)
++.|+ +.|||.|......|
T Consensus 27 ll~f~~~~~cp~C~~~~~~l 46 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDF 46 (140)
T ss_pred EEEEeCCCCCCchHHHHHHH
Confidence 55565 58999998654433
No 272
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=85.90 E-value=1.6 Score=31.21 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=15.0
Q ss_pred EEEEe-cCCChhHHHHHHHHHhc
Q 032253 49 IVIFS-KSYCPYCLRAKRIFADL 70 (144)
Q Consensus 49 Vvvf~-~~~Cp~C~~~~~~L~~~ 70 (144)
|+.|+ ..|||.|......|.++
T Consensus 33 vl~F~~~~~c~~C~~~l~~l~~~ 55 (173)
T cd03015 33 VLFFYPLDFTFVCPTEIIAFSDR 55 (173)
T ss_pred EEEEECCCCCCcCHHHHHHHHHH
Confidence 44555 68999998766555443
No 273
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=85.85 E-value=3.7 Score=25.64 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=35.5
Q ss_pred CCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 55 SYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 55 ~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
+..+.|-++..+|+..++. | .-++.... +. ......+|.+.+||+.++...-
T Consensus 15 ~~~~~~~kv~~~L~elglp-y-e~~~~~~~-~~-------~~P~GkVP~L~~dg~vI~eS~a 66 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLP-F-NVRCRANA-EF-------MSPSGKVPFIRVGNQIVSEFGP 66 (74)
T ss_pred CCCCCHHHHHHHHHHcCCC-c-EEEecCCc-cc-------cCCCCcccEEEECCEEEeCHHH
Confidence 5788899999999999964 4 33343221 11 1123679999999998876655
No 274
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.33 E-value=1.2 Score=33.96 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=40.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCC---e--EEEEeCCCCHHHHHH-HHHHHcCCCcccEEEE--CCEEEe
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQP---F--VVELDLRDDGAQIQY-ILLDLVGRRTVPQIFV--NGEHIG 112 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~---~--~~~id~~~~~~~~~~-~l~~~~g~~~vP~vfi--~g~~ig 112 (144)
++-|.+.|.|.|...-+.+.++..++ . +-.+|+..-++.-+. -+..-.+.+..|++.+ +|+.+.
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVS 219 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhh
Confidence 77888999999999998888875221 1 667777544332111 1112224678899865 777553
No 275
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=84.55 E-value=4.5 Score=31.59 Aligned_cols=67 Identities=21% Similarity=0.396 Sum_probs=46.2
Q ss_pred HHHhhhcCCcEEEEec---C----CChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 39 FVQNSIFSNKIVIFSK---S----YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 39 ~~~~~~~~~~Vvvf~~---~----~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
.-++..++..|.+|.= . -.|||-++.-+|+..++ || ..++-.. +.++...++|-|=+||+++
T Consensus 36 ~hk~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~I-pY-E~~~~~~---------~~rSr~G~lPFIELNGe~i 104 (281)
T KOG4244|consen 36 IHKTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDI-PY-EIVDCSL---------KRRSRNGTLPFIELNGEHI 104 (281)
T ss_pred chhhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCC-Cc-eeccccc---------eeeccCCCcceEEeCCeec
Confidence 3345555555666653 2 36799999999999995 44 4444432 2344467899999999999
Q ss_pred eccCC
Q 032253 112 GGADG 116 (144)
Q Consensus 112 gg~~e 116 (144)
.+-+-
T Consensus 105 aDS~~ 109 (281)
T KOG4244|consen 105 ADSDL 109 (281)
T ss_pred cccHH
Confidence 87765
No 276
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=84.49 E-value=2.4 Score=30.90 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=12.9
Q ss_pred EEEEe-cCCChhHHHHHHHH
Q 032253 49 IVIFS-KSYCPYCLRAKRIF 67 (144)
Q Consensus 49 Vvvf~-~~~Cp~C~~~~~~L 67 (144)
|+.|+ ..|||.|..-...|
T Consensus 35 vl~F~p~~~cp~C~~el~~l 54 (187)
T TIGR03137 35 VFFFYPADFTFVCPTELEDL 54 (187)
T ss_pred EEEEECCCcCCcCHHHHHHH
Confidence 44555 79999998654444
No 277
>PRK10542 glutathionine S-transferase; Provisional
Probab=83.75 E-value=3.6 Score=29.67 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=37.4
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE-CCEEE
Q 032253 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHI 111 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~g~~i 111 (144)
+|+.++ +.+.++.-+|.+.|+....+.+|....+....+++.+.+-...+|++.+ ||..+
T Consensus 3 l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l 63 (201)
T PRK10542 3 LFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLL 63 (201)
T ss_pred eeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEe
Confidence 455443 3467788889999965435666664321111235667777889999987 55444
No 278
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=83.02 E-value=2.6 Score=30.10 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=20.9
Q ss_pred HHHHcCCCcccEEEECCE-EEeccCC
Q 032253 92 LLDLVGRRTVPQIFVNGE-HIGGADG 116 (144)
Q Consensus 92 l~~~~g~~~vP~vfi~g~-~igg~~e 116 (144)
.....|..++|+++|||+ .+-|.+.
T Consensus 159 ~a~~~gv~GvP~~vv~g~~~~~G~~~ 184 (193)
T PF01323_consen 159 EARQLGVFGVPTFVVNGKYRFFGADR 184 (193)
T ss_dssp HHHHTTCSSSSEEEETTTEEEESCSS
T ss_pred HHHHcCCcccCEEEECCEEEEECCCC
Confidence 345568999999999999 7788888
No 279
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=82.11 E-value=10 Score=26.14 Aligned_cols=17 Identities=24% Similarity=0.381 Sum_probs=10.7
Q ss_pred EEEEec-CCChhHHHHHH
Q 032253 49 IVIFSK-SYCPYCLRAKR 65 (144)
Q Consensus 49 Vvvf~~-~~Cp~C~~~~~ 65 (144)
++.|+. .+||.|.....
T Consensus 34 ll~f~~~~~~p~C~~~~~ 51 (154)
T PRK09437 34 LVYFYPKAMTPGCTVQAC 51 (154)
T ss_pred EEEEECCCCCCchHHHHH
Confidence 455554 47999975443
No 280
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.03 E-value=0.75 Score=30.27 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHcCC
Q 032253 7 QSRFLVEAVGLLFFLLLGNA 26 (144)
Q Consensus 7 ~~~~~~~~~~~~~~l~l~~~ 26 (144)
.|.+++++++++++|++++.
T Consensus 3 SK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhh
Confidence 46677777777566665553
No 281
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=80.96 E-value=4.4 Score=27.45 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHhcC-C--CCeEEEEeCCCCHHHHHHHHHHHcC--CCcccEEEECC
Q 032253 56 YCPYCLRAKRIFADLN-E--QPFVVELDLRDDGAQIQYILLDLVG--RRTVPQIFVNG 108 (144)
Q Consensus 56 ~Cp~C~~~~~~L~~~~-~--~~~~~~id~~~~~~~~~~~l~~~~g--~~~vP~vfi~g 108 (144)
.||+|..+.=+|..+. . .-.+..+|...-. .++.+..| .++.|+++.++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR----~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPR----QAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCch----HHHHHHhChhccCCCEEEeCC
Confidence 4999999999988874 1 1116777776653 33444444 57999999954
No 282
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=79.52 E-value=2.7 Score=29.58 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=17.5
Q ss_pred HHHHcCCCcccEEEECCEEEec
Q 032253 92 LLDLVGRRTVPQIFVNGEHIGG 113 (144)
Q Consensus 92 l~~~~g~~~vP~vfi~g~~igg 113 (144)
.....|..++|+++|||+.+-+
T Consensus 135 ~~~~~gi~gTPt~iInG~~~~~ 156 (178)
T cd03019 135 LAKKYKITGVPAFVVNGKYVVN 156 (178)
T ss_pred HHHHcCCCCCCeEEECCEEEEC
Confidence 3445689999999999997743
No 283
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=79.47 E-value=8.6 Score=28.74 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=39.9
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcCCCCe-EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE-CCEEEeccCC
Q 032253 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQPF-VVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGADG 116 (144)
Q Consensus 45 ~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~g~~igg~~e 116 (144)
...++.+|++..||.|......+..-+ .++ ++-++...|...++ .......+|.-.| .++.-=++|.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~-~~~Diylvgs~~dD~~Ir----~WA~~~~Idp~~V~~~~ITLNHD~ 176 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADN-APLDLYLVGSQGDDERIR----QWANRHQIDPAKVRSRQITLNHDN 176 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCC-CceeEEEecCCCCHHHHH----HHHHHcCCCHHHeecCeeEEecCc
Confidence 456799999999999987666554444 343 56667555555443 3333344444444 4444455555
No 284
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=79.11 E-value=5.7 Score=27.27 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=32.6
Q ss_pred CCChhHHH-----------HHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEE
Q 032253 55 SYCPYCLR-----------AKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 55 ~~Cp~C~~-----------~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
.+|+-|.. ++..|..+|+.+.+.++.++.+. +...+ -.-|+|.|||+.+
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~------~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEE------FARQP--LESPTIRINGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHH------Hhhcc--cCCCeeeECCEeh
Confidence 48999973 34445666766557777776642 22222 5789999999977
No 285
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=77.87 E-value=2.6 Score=30.12 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=18.4
Q ss_pred cEEEEecCCChhHHHHHHHHHhc
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
+|++|+...||+|-.+...|.++
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l 23 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKL 23 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHH
Confidence 47899999999998777666554
No 286
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=76.30 E-value=7.1 Score=24.12 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEE-CCEEEeccCC
Q 032253 56 YCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFV-NGEHIGGADG 116 (144)
Q Consensus 56 ~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi-~g~~igg~~e 116 (144)
--|.|-.+..+++..+....-+++-...++. .+-...+|.+.. +|+.+.|+.+
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~--------~Sptg~LP~L~~~~~~~vsg~~~ 66 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW--------LSPTGELPALIDSGGTWVSGFRN 66 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC--------cCCCCCCCEEEECCCcEEECHHH
Confidence 3789999999999988431002333333321 333567999999 9999999998
No 287
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=76.23 E-value=7.4 Score=32.84 Aligned_cols=36 Identities=6% Similarity=0.030 Sum_probs=25.0
Q ss_pred hHHHHHHh----hhcCCcEEEEecCCChhHHHHHHHHHhcC
Q 032253 35 SVSAFVQN----SIFSNKIVIFSKSYCPYCLRAKRIFADLN 71 (144)
Q Consensus 35 ~~~~~~~~----~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~ 71 (144)
+..+++++ +..+-.+++|+. .|++|.+++.+|+++.
T Consensus 5 ~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (517)
T PRK15317 5 NLKTQLKQYLELLERPIELVASLD-DSEKSAELKELLEEIA 44 (517)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHHH
Confidence 34444444 444444666765 8999999999999985
No 288
>PRK13190 putative peroxiredoxin; Provisional
Probab=76.19 E-value=5.1 Score=29.59 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=12.0
Q ss_pred EecCCChhHHHHHHHHH
Q 032253 52 FSKSYCPYCLRAKRIFA 68 (144)
Q Consensus 52 f~~~~Cp~C~~~~~~L~ 68 (144)
|..+|||.|..-...|.
T Consensus 35 ~p~~~cp~C~~El~~l~ 51 (202)
T PRK13190 35 HPADFTPVCTTEFIAFS 51 (202)
T ss_pred EcCCCCCCCHHHHHHHH
Confidence 67899999985444443
No 289
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=76.07 E-value=3 Score=28.01 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=40.7
Q ss_pred CCcEEEEecCC---ChhHHHHHHHHHhcCCCCe--EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEeccCC
Q 032253 46 SNKIVIFSKSY---CPYCLRAKRIFADLNEQPF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGADG 116 (144)
Q Consensus 46 ~~~Vvvf~~~~---Cp~C~~~~~~L~~~~~~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~igg~~e 116 (144)
....++|.... +|.+..+--+|-++- +.+ ....-+.. .+...++...+|....|.+.+ +|+++|....
T Consensus 26 ~~~~vlf~~gDp~r~~E~~DvaVILPEL~-~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~g 100 (107)
T PF07449_consen 26 PGDAVLFFAGDPARFPETADVAVILPELV-KAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDGRYLGAIEG 100 (107)
T ss_dssp CSCEEEEESS-TTTSTTCCHHHHHHHHHH-CTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETTEEEEEEES
T ss_pred CCcEEEEECCCCCcCcccccceeEcHHHH-HhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECCEEEEEecC
Confidence 44466666654 455555555777763 111 12222222 222567999999999999966 9999987665
No 290
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=72.79 E-value=6.9 Score=25.52 Aligned_cols=31 Identities=3% Similarity=-0.011 Sum_probs=22.4
Q ss_pred HHhhhcCCcEEEEecCCChhHHHHHHHHHhcC
Q 032253 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN 71 (144)
Q Consensus 40 ~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~ 71 (144)
..++..+-.+++|+.+. ++|.+++++++++.
T Consensus 14 f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a 44 (94)
T cd02974 14 LERLENPVELVASLDDS-EKSAELLELLEEIA 44 (94)
T ss_pred HHhCCCCEEEEEEeCCC-cchHHHHHHHHHHH
Confidence 33334444466787766 99999999999885
No 291
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=71.82 E-value=19 Score=31.77 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=40.0
Q ss_pred HHHHHhhhcCCcEEE--EecCCChhHHHH----------HHHHHhcCCCCeEEEEeC--CCCHHHHH-HHHHHHcCCCcc
Q 032253 37 SAFVQNSIFSNKIVI--FSKSYCPYCLRA----------KRIFADLNEQPFVVELDL--RDDGAQIQ-YILLDLVGRRTV 101 (144)
Q Consensus 37 ~~~~~~~~~~~~Vvv--f~~~~Cp~C~~~----------~~~L~~~~~~~~~~~id~--~~~~~~~~-~~l~~~~g~~~v 101 (144)
.++..++.+..+.|+ .+.+||..|+-+ -.+|++.=+ -+++|- ..|-+++. +.....+|..+-
T Consensus 33 ~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV---~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 33 EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFV---PVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCce---eeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 444555554444333 567999999833 333333221 244444 44444443 345556678888
Q ss_pred cEEEE---CCEEE
Q 032253 102 PQIFV---NGEHI 111 (144)
Q Consensus 102 P~vfi---~g~~i 111 (144)
|..++ ||+++
T Consensus 110 PLtVfLTPd~kPF 122 (667)
T COG1331 110 PLTVFLTPDGKPF 122 (667)
T ss_pred ceeEEECCCCcee
Confidence 87655 78755
No 292
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.37 E-value=8.3 Score=27.75 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=18.9
Q ss_pred HHHcCCCcccEEEECCEE-EeccCC
Q 032253 93 LDLVGRRTVPQIFVNGEH-IGGADG 116 (144)
Q Consensus 93 ~~~~g~~~vP~vfi~g~~-igg~~e 116 (144)
....|..++|+++|||++ +.|..+
T Consensus 168 a~~~gv~G~Pt~vv~g~~~~~G~~~ 192 (201)
T cd03024 168 ARQLGISGVPFFVFNGKYAVSGAQP 192 (201)
T ss_pred HHHCCCCcCCEEEECCeEeecCCCC
Confidence 345589999999999884 577776
No 293
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=70.34 E-value=39 Score=25.81 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=50.4
Q ss_pred ccchhHHHHHHhhhcCCcEEEEecC-----CChhHHHHHHHHHhcC-CCC---eEEEEeCCCCHHHHHHHHHHHcCCCcc
Q 032253 31 EADHSVSAFVQNSIFSNKIVIFSKS-----YCPYCLRAKRIFADLN-EQP---FVVELDLRDDGAQIQYILLDLVGRRTV 101 (144)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~Vvvf~~~-----~Cp~C~~~~~~L~~~~-~~~---~~~~id~~~~~~~~~~~l~~~~g~~~v 101 (144)
.-+..+.+.++.+-++-.|.+|..+ .-++=..++.+|+++. ..+ .+..+|...++... +.....+|...+
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~-~~~~~~~Gi~~~ 89 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEA-EEKAKEYGIQPV 89 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHH-HHHHHhcCCCcc
Confidence 4456788888888888889999887 5677788899999883 222 27788887776553 445566676554
Q ss_pred c
Q 032253 102 P 102 (144)
Q Consensus 102 P 102 (144)
+
T Consensus 90 ~ 90 (271)
T PF09822_consen 90 Q 90 (271)
T ss_pred c
Confidence 4
No 294
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=70.30 E-value=8 Score=28.52 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=12.7
Q ss_pred EEecCCChhHHHHHHHHHh
Q 032253 51 IFSKSYCPYCLRAKRIFAD 69 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~ 69 (144)
.|..+|||.|..-...|.+
T Consensus 32 ~~pa~~cp~C~~el~~l~~ 50 (203)
T cd03016 32 SHPADFTPVCTTELGAFAK 50 (203)
T ss_pred EecCCCCCcCHHHHHHHHH
Confidence 3667899999865444433
No 295
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=69.36 E-value=52 Score=28.26 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=39.8
Q ss_pred cchhHHHHHHhhhcCCcEEEEecCCCh-----hHHHHHHHHHhcC-CCC--eEEEEeCCCCHHH
Q 032253 32 ADHSVSAFVQNSIFSNKIVIFSKSYCP-----YCLRAKRIFADLN-EQP--FVVELDLRDDGAQ 87 (144)
Q Consensus 32 ~~~~~~~~~~~~~~~~~Vvvf~~~~Cp-----~C~~~~~~L~~~~-~~~--~~~~id~~~~~~~ 87 (144)
-++.+.+.++.+-++-+|.+|..+.-| +=.+++.+|+++. ..+ .+..+|...++++
T Consensus 35 LS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~ 98 (552)
T TIGR03521 35 LSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDE 98 (552)
T ss_pred cCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Confidence 346778888888888889999877655 3467888999884 112 2677887766543
No 296
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=68.72 E-value=4.6 Score=26.82 Aligned_cols=16 Identities=31% Similarity=0.827 Sum_probs=14.1
Q ss_pred cEEEEecCCChhHHHH
Q 032253 48 KIVIFSKSYCPYCLRA 63 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~ 63 (144)
+|.+|+.+-||+|++.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5889999999999874
No 297
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.75 E-value=13 Score=31.33 Aligned_cols=62 Identities=21% Similarity=0.347 Sum_probs=40.3
Q ss_pred cCCChhHHHHHHHHHhcC--CCCeEEEEeCCCCHHHHHHHHH---HHcCC--CcccEEEE-------CCEEEeccCC
Q 032253 54 KSYCPYCLRAKRIFADLN--EQPFVVELDLRDDGAQIQYILL---DLVGR--RTVPQIFV-------NGEHIGGADG 116 (144)
Q Consensus 54 ~~~Cp~C~~~~~~L~~~~--~~~~~~~id~~~~~~~~~~~l~---~~~g~--~~vP~vfi-------~g~~igg~~e 116 (144)
+.+|||=.++.-+-+.+. ...| .-.-+...|+++.+-|. +..|| ..=|.|.= .|..+||++|
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f-~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~ 76 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDF-RVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNE 76 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCc-eEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHH
Confidence 468999999998888875 2223 33344555555444444 34455 45688853 4668999999
No 298
>PRK13599 putative peroxiredoxin; Provisional
Probab=66.71 E-value=11 Score=28.29 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=11.5
Q ss_pred EEecCCChhHHHHHHHH
Q 032253 51 IFSKSYCPYCLRAKRIF 67 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L 67 (144)
.|..+|||.|..-...|
T Consensus 35 ~~pa~~tpvCt~El~~l 51 (215)
T PRK13599 35 SHPADFTPVCTTEFVEF 51 (215)
T ss_pred EeCCCCCCcCHHHHHHH
Confidence 45678999998544333
No 299
>PLN02590 probable tyrosine decarboxylase
Probab=65.93 E-value=37 Score=29.24 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=45.2
Q ss_pred CcEEEEecCCChhHH-HHHHHHHhcCCCCeEEEEeC----CCCHHHHHHHHHHHcCCCcccEEEE---CCEEEeccCCc
Q 032253 47 NKIVIFSKSYCPYCL-RAKRIFADLNEQPFVVELDL----RDDGAQIQYILLDLVGRRTVPQIFV---NGEHIGGADGW 117 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~-~~~~~L~~~~~~~~~~~id~----~~~~~~~~~~l~~~~g~~~vP~vfi---~g~~igg~~e~ 117 (144)
.++++|+...+.+|. ++-.++.--......+.+|. ..+.+.+++.+.+-......|.+++ +-...|.+|+.
T Consensus 228 ~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl 306 (539)
T PLN02590 228 PQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPL 306 (539)
T ss_pred CCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCH
Confidence 568999999999994 44444322111111344442 3577888888877555567888877 44567999993
No 300
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=65.51 E-value=40 Score=24.43 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=39.9
Q ss_pred hhHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCCC----------Ce--EEEEeCCCCHHHHHHHHHHHcCCCcc
Q 032253 34 HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ----------PF--VVELDLRDDGAQIQYILLDLVGRRTV 101 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~----------~~--~~~id~~~~~~~~~~~l~~~~g~~~v 101 (144)
.++.+.++.+.. ..+.+-..|.++.=.-|+++|+.+++. .+ +.+|-..+-..+ -+.+.+.+|.+.=
T Consensus 48 pdv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~H-f~~i~~~tgI~y~ 125 (169)
T PF12689_consen 48 PDVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTH-FRRIHRKTGIPYE 125 (169)
T ss_dssp TTHHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHH-HHHHHHHH---GG
T ss_pred cCHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHH-HHHHHHhcCCChh
Confidence 345556665554 334444444444448899999998866 33 444444433344 3567888888877
Q ss_pred cEEEECCE
Q 032253 102 PQIFVNGE 109 (144)
Q Consensus 102 P~vfi~g~ 109 (144)
=.+|+|++
T Consensus 126 eMlFFDDe 133 (169)
T PF12689_consen 126 EMLFFDDE 133 (169)
T ss_dssp GEEEEES-
T ss_pred HEEEecCc
Confidence 88999876
No 301
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.33 E-value=27 Score=26.17 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=43.7
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEe
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIG 112 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~ig 112 (144)
.+++-+..+.|.-++.+|...++. |.+..+..... -.+++..+....+|.+-+||..+.
T Consensus 5 kL~Yf~~RG~ae~iR~lf~~a~v~--fEd~r~~~~~~--w~~~K~~~pfgqlP~l~vDg~~i~ 63 (206)
T KOG1695|consen 5 KLTYFNIRGLAEPIRLLFAYAGVS--FEDKRITMEDA--WEELKDKMPFGQLPVLEVDGKKLV 63 (206)
T ss_pred EEEecCcchhHHHHHHHHHhcCCC--cceeeeccccc--hhhhcccCCCCCCCEEeECCEeec
Confidence 445558889999999999999965 46766655431 234666677889999999998764
No 302
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=65.07 E-value=57 Score=25.94 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=8.3
Q ss_pred HHHHcCCCcccEEEE
Q 032253 92 LLDLVGRRTVPQIFV 106 (144)
Q Consensus 92 l~~~~g~~~vP~vfi 106 (144)
+.......+.|-|+.
T Consensus 73 l~~~~asg~~PDv~~ 87 (396)
T PRK09474 73 FPQVAATGDGPDIIF 87 (396)
T ss_pred HHHHhhcCCCCcEEE
Confidence 444333445688875
No 303
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=64.97 E-value=31 Score=24.17 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=11.2
Q ss_pred CCcEEEEe--cCCChhHHHH
Q 032253 46 SNKIVIFS--KSYCPYCLRA 63 (144)
Q Consensus 46 ~~~Vvvf~--~~~Cp~C~~~ 63 (144)
..++++|. ..+||.|..-
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred CCcEEEEEeCCCCCCCCchh
Confidence 34555554 4679999643
No 304
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=64.35 E-value=32 Score=25.12 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=9.5
Q ss_pred EEEEe-cCCChhHHHHHH
Q 032253 49 IVIFS-KSYCPYCLRAKR 65 (144)
Q Consensus 49 Vvvf~-~~~Cp~C~~~~~ 65 (144)
+++|+ ..+||.|.....
T Consensus 40 lL~F~p~~~~~~C~~e~~ 57 (199)
T PTZ00253 40 VLFFYPLDFTFVCPTEII 57 (199)
T ss_pred EEEEEcCCCCCcCHHHHH
Confidence 44555 356777765433
No 305
>PRK13189 peroxiredoxin; Provisional
Probab=63.11 E-value=15 Score=27.63 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=10.7
Q ss_pred EEecCCChhHHHHHH
Q 032253 51 IFSKSYCPYCLRAKR 65 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~ 65 (144)
.|..+|||.|..-..
T Consensus 42 f~pa~fcpvC~tEl~ 56 (222)
T PRK13189 42 SHPADFTPVCTTEFV 56 (222)
T ss_pred EeCCCCCCCCHHHHH
Confidence 356799999985433
No 306
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=63.04 E-value=25 Score=28.50 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=40.7
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCC----CCHHHHHHHHHHHcCCCcccEEEE--CCE-EEeccCC
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR----DDGAQIQYILLDLVGRRTVPQIFV--NGE-HIGGADG 116 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~----~~~~~~~~~l~~~~g~~~vP~vfi--~g~-~igg~~e 116 (144)
..+.++|....++||. .+...-+|+. +..|..+ .+.+.+++.+.+......+|.+++ -|. ..|.+|+
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg--~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~ 212 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLG--VRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP 212 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSE--EEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S
T ss_pred ccccccccccccccHH--HHhcceeeeE--EEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccC
Confidence 4568899999999996 3444445543 3444443 356677777777666667885554 344 5699999
No 307
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.96 E-value=8.5 Score=28.83 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.5
Q ss_pred CCcEEEEecCCChhHHHHHHHHHh
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFAD 69 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~ 69 (144)
+..+++|....||+|++...-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 345888999999999777666655
No 308
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=62.69 E-value=5.4 Score=28.50 Aligned_cols=23 Identities=17% Similarity=0.582 Sum_probs=18.0
Q ss_pred cEEEEecCCChhHHHHHHHHHhc
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
+|.+|+-+.||+|-.+.+.|.++
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l 24 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKL 24 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHH
Confidence 47899999999998666665543
No 309
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=60.99 E-value=5.8 Score=30.66 Aligned_cols=23 Identities=17% Similarity=0.592 Sum_probs=16.6
Q ss_pred EEEEecCCChhHHHHHH----HHHhcC
Q 032253 49 IVIFSKSYCPYCLRAKR----IFADLN 71 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~----~L~~~~ 71 (144)
|+..+..|||+|...+. .|.++|
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcC
Confidence 55566789999987765 456666
No 310
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=60.11 E-value=20 Score=26.21 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=12.5
Q ss_pred EEEEe-cCCChhHHHHHHHH
Q 032253 49 IVIFS-KSYCPYCLRAKRIF 67 (144)
Q Consensus 49 Vvvf~-~~~Cp~C~~~~~~L 67 (144)
|+.|+ ..|||.|..-...|
T Consensus 35 vL~F~P~~~~p~C~~el~~l 54 (187)
T PRK10382 35 VFFFYPADFTFVCPTELGDV 54 (187)
T ss_pred EEEEECCCCCCcCHHHHHHH
Confidence 44555 79999998643333
No 311
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=57.93 E-value=26 Score=26.81 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=39.4
Q ss_pred EEEecCCChhHHHHHHHHHhcCCC-Ce--EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE--CCEEEeccCC
Q 032253 50 VIFSKSYCPYCLRAKRIFADLNEQ-PF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFV--NGEHIGGADG 116 (144)
Q Consensus 50 vvf~~~~Cp~C~~~~~~L~~~~~~-~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi--~g~~igg~~e 116 (144)
|..+-++-+-|......+.-+... |. |..+-.+.-. ....+....+|++.| +|+.||+|-.
T Consensus 164 VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~g------as~~F~~n~lP~LliYkgGeLIgNFv~ 229 (273)
T KOG3171|consen 164 VHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTG------ASDRFSLNVLPTLLIYKGGELIGNFVS 229 (273)
T ss_pred EEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecccc------chhhhcccCCceEEEeeCCchhHHHHH
Confidence 335568999999888888776522 22 3444333322 223344568999977 8999999876
No 312
>PLN02880 tyrosine decarboxylase
Probab=57.10 E-value=42 Score=28.35 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=44.7
Q ss_pred CcEEEEecCCChhHH-HHHHHHHhcCCCCeEEEEeC----CCCHHHHHHHHHHHcCCCcccEEEE---CCEEEeccCCc
Q 032253 47 NKIVIFSKSYCPYCL-RAKRIFADLNEQPFVVELDL----RDDGAQIQYILLDLVGRRTVPQIFV---NGEHIGGADGW 117 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~-~~~~~L~~~~~~~~~~~id~----~~~~~~~~~~l~~~~g~~~vP~vfi---~g~~igg~~e~ 117 (144)
.++++|....+++|- ++-.+|.--......+..|. ..+.+.+++.+.+.......|.+++ +-...|.+|+.
T Consensus 180 ~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl 258 (490)
T PLN02880 180 EKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPL 258 (490)
T ss_pred CCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcH
Confidence 468999999999994 55555533110101344442 3577777777776554556888877 44467999993
No 313
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=56.75 E-value=67 Score=22.59 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=39.8
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCC-cccEE--EE-CCEEEeccCC
Q 032253 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRR-TVPQI--FV-NGEHIGGADG 116 (144)
Q Consensus 45 ~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~-~vP~v--fi-~g~~igg~~e 116 (144)
++...+|+.--.||.|....++|.+..-...+...++..++. + .+.+.+|.. .-+.. ++ +|+.+-|.+-
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g--~-~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA 78 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPG--Q-ALLEAAGLDPEDVDSVLLVEAGQLLVGSDA 78 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchh--h-hHHhhcCCChhhhheeeEecCCceEeccHH
Confidence 345567777889999999988888875222245566644433 2 344444532 11222 33 6666665554
No 314
>PRK15000 peroxidase; Provisional
Probab=55.75 E-value=32 Score=25.35 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=13.7
Q ss_pred CCcEEEEec--CCChhHHHHHHHHHh
Q 032253 46 SNKIVIFSK--SYCPYCLRAKRIFAD 69 (144)
Q Consensus 46 ~~~Vvvf~~--~~Cp~C~~~~~~L~~ 69 (144)
.+.+++|.. .|||-|..-..-|.+
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~ 59 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDK 59 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHH
Confidence 334554444 479999865444433
No 315
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=55.22 E-value=58 Score=23.38 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=32.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHH
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLD 94 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~ 94 (144)
|++=++++=|.++++...|+++++.+.+.-......++.+.+..++
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~ 48 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKE 48 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHH
Confidence 4445567889999999999999965334444556677776665554
No 316
>PRK13191 putative peroxiredoxin; Provisional
Probab=55.18 E-value=24 Score=26.41 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=13.1
Q ss_pred EEecCCChhHHHHHHHHHh
Q 032253 51 IFSKSYCPYCLRAKRIFAD 69 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~ 69 (144)
.|..+|||.|..-...|.+
T Consensus 40 f~pa~ftpvC~tEl~~l~~ 58 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSFAK 58 (215)
T ss_pred EeCCCCCCcCHHHHHHHHH
Confidence 4568999999865544443
No 317
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=53.80 E-value=16 Score=22.46 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.6
Q ss_pred CcccEEEECCEEEeccCC
Q 032253 99 RTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 99 ~~vP~vfi~g~~igg~~e 116 (144)
..-|.+.|||+++++.+.
T Consensus 45 ~~gP~v~V~~~~~~~~t~ 62 (72)
T cd03082 45 ERAPAALVGQRPVDGATP 62 (72)
T ss_pred CCCCeEEECCEEeCCcCH
Confidence 468999999999988876
No 318
>PF12354 Internalin_N: Bacterial adhesion/invasion protein N terminal; PDB: 2OMT_A 1H6U_A 3RFS_A 3RFJ_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=53.11 E-value=4.4 Score=24.08 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=0.0
Q ss_pred CcccchHHHHHHHHHHHH
Q 032253 1 MKKRGWQSRFLVEAVGLL 18 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (144)
|||..|.+..++..++++
T Consensus 1 Mkk~~~lk~~l~~~lv~~ 18 (57)
T PF12354_consen 1 MKKKNWLKNLLILLLVII 18 (57)
T ss_dssp ------------------
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 899999888777666664
No 319
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=53.06 E-value=1.4e+02 Score=25.30 Aligned_cols=73 Identities=14% Similarity=0.311 Sum_probs=44.5
Q ss_pred hhcCCcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCH----HHHHHHHHHHcCCCcccEEEE---CCEEEeccC
Q 032253 43 SIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDG----AQIQYILLDLVGRRTVPQIFV---NGEHIGGAD 115 (144)
Q Consensus 43 ~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~----~~~~~~l~~~~g~~~vP~vfi---~g~~igg~~ 115 (144)
...-++.++|++..|.|..+--+.+--+| ..+++.|+-++.. +.++.-+.+.-....+|-++- +-...|.||
T Consensus 192 m~~~p~lilFtSeesHYSi~kaAa~lg~g-td~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFD 270 (510)
T KOG0629|consen 192 MFALPPLILFTSEESHYSIKKAAAFLGLG-TDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFD 270 (510)
T ss_pred hhcCCcEEEEecccchhhHHHHHHHhccC-CceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccC
Confidence 34446799999999999965555555556 3345666655443 333333333323345665544 455779999
Q ss_pred C
Q 032253 116 G 116 (144)
Q Consensus 116 e 116 (144)
+
T Consensus 271 d 271 (510)
T KOG0629|consen 271 D 271 (510)
T ss_pred c
Confidence 9
No 320
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=51.23 E-value=77 Score=25.37 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=23.4
Q ss_pred cCCChhHHHHHHHHHhcCC--CC-eEEEEeCCCC
Q 032253 54 KSYCPYCLRAKRIFADLNE--QP-FVVELDLRDD 84 (144)
Q Consensus 54 ~~~Cp~C~~~~~~L~~~~~--~~-~~~~id~~~~ 84 (144)
--+|+.|++++.+|+.+.- .+ .|+-+|++.+
T Consensus 82 ELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred EECCCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 5689999999999988741 12 2788888863
No 321
>CHL00132 psaF photosystem I subunit III; Validated
Probab=50.79 E-value=68 Score=23.60 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=11.7
Q ss_pred CCCcccEEEECCEE
Q 032253 97 GRRTVPQIFVNGEH 110 (144)
Q Consensus 97 g~~~vP~vfi~g~~ 110 (144)
|..+.|++++||++
T Consensus 88 G~DGLPHLI~dG~~ 101 (185)
T CHL00132 88 GTDGLPHLITDGRW 101 (185)
T ss_pred CCCCCceeecCCCc
Confidence 45799999999973
No 322
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.50 E-value=7.4 Score=30.58 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=12.1
Q ss_pred EEecCCChhHHHHHHHHHh
Q 032253 51 IFSKSYCPYCLRAKRIFAD 69 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~ 69 (144)
+=-+++||||++-..+=+.
T Consensus 267 vGKkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 267 VGKKQTCPYCKEKVDLKRM 285 (328)
T ss_pred ecCCCCCchHHHHhhHhhh
Confidence 3335899999875544333
No 323
>PRK13697 cytochrome c6; Provisional
Probab=50.39 E-value=13 Score=24.39 Aligned_cols=9 Identities=22% Similarity=0.693 Sum_probs=7.1
Q ss_pred cCCChhHHH
Q 032253 54 KSYCPYCLR 62 (144)
Q Consensus 54 ~~~Cp~C~~ 62 (144)
...|-.|+-
T Consensus 36 ~~~C~~CHg 44 (111)
T PRK13697 36 SANCASCHA 44 (111)
T ss_pred HHHHHHhCC
Confidence 467999986
No 324
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=49.83 E-value=35 Score=21.85 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=11.5
Q ss_pred CcccchHHHH-HHHHHHHHHHHHHcCCC
Q 032253 1 MKKRGWQSRF-LVEAVGLLFFLLLGNAP 27 (144)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~l~l~~~~ 27 (144)
|||...+++. .+..+++++++++...+
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~~~~~~~A 28 (99)
T PF04956_consen 1 MKKVQSKKRRKFLLLLLALALLLLASPA 28 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 7755443333 33333333344434333
No 325
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=48.97 E-value=17 Score=25.76 Aligned_cols=22 Identities=23% Similarity=0.313 Sum_probs=17.0
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 032253 49 IVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
|.+|+..-||+|--+...|.++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~ 22 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPAL 22 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHH
Confidence 3578889999998777666654
No 326
>PRK08118 topology modulation protein; Reviewed
Probab=48.35 E-value=90 Score=22.09 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=23.6
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCC
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADLNEQ 73 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~~~~ 73 (144)
.+|+|++.++|+-..-++.+-+.++..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 479999999999999999999998854
No 327
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=48.25 E-value=25 Score=29.68 Aligned_cols=36 Identities=8% Similarity=0.022 Sum_probs=24.6
Q ss_pred hHHHHHHhh----hcCCcEEEEecCCChhHHHHHHHHHhcC
Q 032253 35 SVSAFVQNS----IFSNKIVIFSKSYCPYCLRAKRIFADLN 71 (144)
Q Consensus 35 ~~~~~~~~~----~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~ 71 (144)
+.+++++.. ..+-.+++|+. .|++|.+++++|+++.
T Consensus 5 ~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (515)
T TIGR03140 5 SLLAQLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEIA 44 (515)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHHH
Confidence 344444443 34444556665 7999999999999985
No 328
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=48.10 E-value=52 Score=25.55 Aligned_cols=21 Identities=5% Similarity=-0.044 Sum_probs=12.9
Q ss_pred cCCcEEEE-e-cCCChhHHHHHH
Q 032253 45 FSNKIVIF-S-KSYCPYCLRAKR 65 (144)
Q Consensus 45 ~~~~Vvvf-~-~~~Cp~C~~~~~ 65 (144)
+...+++| + ..|||.|..-..
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~ 119 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELL 119 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHH
Confidence 34345544 3 689999986333
No 329
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=47.48 E-value=27 Score=23.72 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=17.3
Q ss_pred cCCCcccEEEECCEEE-eccCC
Q 032253 96 VGRRTVPQIFVNGEHI-GGADG 116 (144)
Q Consensus 96 ~g~~~vP~vfi~g~~i-gg~~e 116 (144)
+|...+|.|++|++++ -|-.|
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~D 101 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETD 101 (113)
T ss_pred cCCccCCEEEEcCCeEEecCcc
Confidence 3789999999999976 56666
No 330
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=47.39 E-value=24 Score=23.96 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.0
Q ss_pred CCCcccEEEECCEEE-eccCC
Q 032253 97 GRRTVPQIFVNGEHI-GGADG 116 (144)
Q Consensus 97 g~~~vP~vfi~g~~i-gg~~e 116 (144)
|...+|.|++|+++| -|-.|
T Consensus 80 gi~k~PAVVfD~~~VVYG~tD 100 (114)
T PF07511_consen 80 GITKYPAVVFDDRYVVYGETD 100 (114)
T ss_pred CccccCEEEEcCCeEEecccH
Confidence 788999999999966 67776
No 331
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=46.98 E-value=20 Score=19.71 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=19.9
Q ss_pred EECCEEEeccCCcchhhhhhhHHHHHHHHcCchhH
Q 032253 105 FVNGEHIGGADGWSQLSLAHSTYLKAAVLSGQLQQ 139 (144)
Q Consensus 105 fi~g~~igg~~e~~~~~~~~~~~~~~~~~~g~L~~ 139 (144)
..||+..|-++. .+|.++..+|++..
T Consensus 5 ~~~g~~~GP~s~---------~el~~l~~~g~i~~ 30 (45)
T PF14237_consen 5 ARNGQQQGPFSL---------EELRQLISSGEIDP 30 (45)
T ss_pred eCCCeEECCcCH---------HHHHHHHHcCCCCC
Confidence 348889998887 44888888988753
No 332
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=45.10 E-value=79 Score=24.51 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=39.0
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcCCCCe-EEEEeCCC--CHHHHHHHHHHHcCCCcccEEEECCEE
Q 032253 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQPF-VVELDLRD--DGAQIQYILLDLVGRRTVPQIFVNGEH 110 (144)
Q Consensus 45 ~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~-~~~id~~~--~~~~~~~~l~~~~g~~~vP~vfi~g~~ 110 (144)
..+.|.+++..+|+-..-++.++.++..... +++++-.. +-..+.+.+. +.+.-=.||+|+=.
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~---~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLR---DRPYKFILFCDDLS 116 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHh---cCCCCEEEEecCCC
Confidence 4566999999999999999999998863332 55554332 2222222222 33333356778743
No 333
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=44.24 E-value=98 Score=24.32 Aligned_cols=47 Identities=15% Similarity=0.439 Sum_probs=26.9
Q ss_pred EEEEecCCChh-HH----HHHHHHHhcC----C--CCeEEEEeCCCC-HHHHHHHHHHH
Q 032253 49 IVIFSKSYCPY-CL----RAKRIFADLN----E--QPFVVELDLRDD-GAQIQYILLDL 95 (144)
Q Consensus 49 Vvvf~~~~Cp~-C~----~~~~~L~~~~----~--~~~~~~id~~~~-~~~~~~~l~~~ 95 (144)
++.|+-+.||+ |. ++..+++++. + .|.++.+|...| ++.+.+.+++.
T Consensus 143 LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF 201 (280)
T KOG2792|consen 143 LIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEF 201 (280)
T ss_pred EEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhc
Confidence 55677788885 53 4445555442 2 244788888555 44444444443
No 334
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.05 E-value=16 Score=27.82 Aligned_cols=24 Identities=33% Similarity=0.692 Sum_probs=18.2
Q ss_pred CcEEEEecCCChhHHHHHHHHHhc
Q 032253 47 NKIVIFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 47 ~~Vvvf~~~~Cp~C~~~~~~L~~~ 70 (144)
.+|.+|+-.-||+|---++-|++.
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHH
Confidence 358889999999997666655554
No 335
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=43.52 E-value=61 Score=22.99 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=25.1
Q ss_pred cCCcEEEEecCCChhHHHHHHHHHhcCCC
Q 032253 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQ 73 (144)
Q Consensus 45 ~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~ 73 (144)
+..+||+|-.++|+.+..+-..|..+|..
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 55779999999999999999999999954
No 336
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.63 E-value=25 Score=25.19 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=15.8
Q ss_pred EEEEecCCChhHHHHHHHHHh
Q 032253 49 IVIFSKSYCPYCLRAKRIFAD 69 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~ 69 (144)
|.+|+-.-||+|--+...|.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~ 21 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEK 21 (201)
T ss_pred CeEEecCcCccHHHHHHHHHH
Confidence 458889999999866665543
No 337
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=39.01 E-value=95 Score=20.62 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=19.5
Q ss_pred CChhHHHH-HHHHHhcCCCCeEEEEeC
Q 032253 56 YCPYCLRA-KRIFADLNEQPFVVELDL 81 (144)
Q Consensus 56 ~Cp~C~~~-~~~L~~~~~~~~~~~id~ 81 (144)
.|-.|..+ +++|.+.++.-.++.++-
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 69999755 789999996544666666
No 338
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.96 E-value=65 Score=24.58 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=17.3
Q ss_pred HHHcCCCcccEEEECCE-EEeccCC
Q 032253 93 LDLVGRRTVPQIFVNGE-HIGGADG 116 (144)
Q Consensus 93 ~~~~g~~~vP~vfi~g~-~igg~~e 116 (144)
.+..|+++||+++++|+ -|-|...
T Consensus 177 A~e~gI~gVP~fv~d~~~~V~Gaq~ 201 (225)
T COG2761 177 AQEMGIRGVPTFVFDGKYAVSGAQP 201 (225)
T ss_pred HHHCCCccCceEEEcCcEeecCCCC
Confidence 34558999999999555 5556655
No 339
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=38.63 E-value=1e+02 Score=19.87 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=25.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCeEEEEeC
Q 032253 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~ 81 (144)
|++++.++|+--.-++.+.+.++.. ++++|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~--~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP--FIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE--EEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc--cccccc
Confidence 5789999999999999999998843 466665
No 340
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=38.49 E-value=41 Score=24.64 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=17.0
Q ss_pred cEEEEecCCChhHHHHHHHHHh
Q 032253 48 KIVIFSKSYCPYCLRAKRIFAD 69 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~ 69 (144)
+|-+|+-.-||+|--+.+-|.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~ 23 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCR 23 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHH
Confidence 5778999999999866665544
No 341
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=38.23 E-value=2e+02 Score=22.74 Aligned_cols=31 Identities=6% Similarity=-0.002 Sum_probs=21.7
Q ss_pred HhhhcCCcEEEEecCCChh--HHHHHHHHHhcC
Q 032253 41 QNSIFSNKIVIFSKSYCPY--CLRAKRIFADLN 71 (144)
Q Consensus 41 ~~~~~~~~Vvvf~~~~Cp~--C~~~~~~L~~~~ 71 (144)
+..-.+..|.+|-+++++. +..+.+.++...
T Consensus 60 ~~~~~~~~i~vyl~~~~~~~~~~~l~~~l~~~~ 92 (309)
T TIGR00439 60 TQLYPSPQITVYLEKALAQSDADTVVSLLTRDK 92 (309)
T ss_pred HhhccCceEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 3344456799999998874 467777777765
No 342
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=36.61 E-value=1.5e+02 Score=21.94 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=26.1
Q ss_pred EEEEecCCCh-hHHH----HHHHHHhcCC---C---CeEEEEeCCCCHHHHHHHHHHHcC
Q 032253 49 IVIFSKSYCP-YCLR----AKRIFADLNE---Q---PFVVELDLRDDGAQIQYILLDLVG 97 (144)
Q Consensus 49 Vvvf~~~~Cp-~C~~----~~~~L~~~~~---~---~~~~~id~~~~~~~~~~~l~~~~g 97 (144)
++.|+-..|| -|.- ...++++++. . ..++.+|.+.|.. +.++++..
T Consensus 71 lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp---~~lk~Y~~ 127 (207)
T COG1999 71 LVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTP---EVLKKYAE 127 (207)
T ss_pred EEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCH---HHHHHHhc
Confidence 6667778888 5753 3445555541 1 1266777766643 34555543
No 343
>PF15616 TerY-C: TerY-C metal binding domain
Probab=36.30 E-value=10 Score=26.39 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=11.2
Q ss_pred EEecCCChhHHHHHH
Q 032253 51 IFSKSYCPYCLRAKR 65 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~ 65 (144)
+.+.|+||+|-....
T Consensus 74 L~g~PgCP~CGn~~~ 88 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYA 88 (131)
T ss_pred hcCCCCCCCCcChhc
Confidence 566799999976543
No 344
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=34.70 E-value=41 Score=24.19 Aligned_cols=20 Identities=20% Similarity=0.612 Sum_probs=14.8
Q ss_pred EEecCCChhHHHHHHHHHhc
Q 032253 51 IFSKSYCPYCLRAKRIFADL 70 (144)
Q Consensus 51 vf~~~~Cp~C~~~~~~L~~~ 70 (144)
+|+.|-|+.|-...+.+.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl 21 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKL 21 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHH
Confidence 68899999998887777665
No 345
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=34.52 E-value=32 Score=21.38 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.7
Q ss_pred CcccEEEECCEEEeccCC
Q 032253 99 RTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 99 ~~vP~vfi~g~~igg~~e 116 (144)
..-|.+.|||+++++.+.
T Consensus 53 ~~gP~~~v~~~~~~~~~~ 70 (80)
T cd03081 53 ACSPAAMIDGEVHGRVDP 70 (80)
T ss_pred CCCCEEEECCEEECCCCH
Confidence 467999999999998887
No 346
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=34.19 E-value=38 Score=23.66 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=16.1
Q ss_pred CcccEEEECCEEEeccCC
Q 032253 99 RTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 99 ~~vP~vfi~g~~igg~~e 116 (144)
..-|.+.|||+++++.+.
T Consensus 117 ~~aP~v~V~~~~y~~vt~ 134 (145)
T PF01257_consen 117 DQAPVVMVDGEWYGNVTP 134 (145)
T ss_dssp GGSSEEEECCCEEESSSC
T ss_pred CCCCEEEECCEEECCCCH
Confidence 457999999999999988
No 347
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=34.11 E-value=16 Score=28.74 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCCcchhhhhhh
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADGWSQLSLAHS 125 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e~~~~~~~~~ 125 (144)
....++|..|..=..++++-++.+.++..+-+++|.... ++...-+.+.+...-||.+.-+...|-....
T Consensus 24 ~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~g-eh~epwFmrlNp~gevPVl~~g~~II~d~tq--------- 93 (325)
T KOG4420|consen 24 RESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQG-EHKEPWFMRLNPGGEVPVLIHGDNIISDYTQ--------- 93 (325)
T ss_pred hhcceeeecCcccccceeeeehhhcccccceeeccCccc-cccCchheecCCCCCCceEecCCeecccHHH---------
Confidence 334888999999999999999999997643334444322 2212234445455679977666666666666
Q ss_pred HHHHHHHHc
Q 032253 126 TYLKAAVLS 134 (144)
Q Consensus 126 ~~~~~~~~~ 134 (144)
|.+..++
T Consensus 94 --IIdYvEr 100 (325)
T KOG4420|consen 94 --IIDYVER 100 (325)
T ss_pred --HHHHHHH
Confidence 7766655
No 348
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=33.46 E-value=28 Score=26.99 Aligned_cols=22 Identities=41% Similarity=0.671 Sum_probs=15.7
Q ss_pred chHHHHHHHHHHHHHHHHHcCC
Q 032253 5 GWQSRFLVEAVGLLFFLLLGNA 26 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~l~~~ 26 (144)
+|++|.+...+++++++++.+.
T Consensus 31 GWRKrcLY~fvLlL~i~ivvNL 52 (292)
T KOG3950|consen 31 GWRKRCLYTFVLLLMILIVVNL 52 (292)
T ss_pred ehHHHHHHHHHHHHHHHHHHHH
Confidence 7999998777777666655543
No 349
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=33.39 E-value=88 Score=21.69 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=18.9
Q ss_pred CcEEEEec-CCChhHHHHHHHHHh-cC
Q 032253 47 NKIVIFSK-SYCPYCLRAKRIFAD-LN 71 (144)
Q Consensus 47 ~~Vvvf~~-~~Cp~C~~~~~~L~~-~~ 71 (144)
.+|.+|+. +.|+.|..+..-|.. +.
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~~~p 123 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKKDFP 123 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHHHCC
Confidence 57899995 789999988765544 44
No 350
>PF12930 DUF3836: Family of unknown function (DUF3836); InterPro: IPR024339 This entry represents a family of bacterial proteins of unknown function.; PDB: 3MSW_A.
Probab=33.20 E-value=18 Score=25.21 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred CcccchHHHHHHHHHHHHHHHHHcCC
Q 032253 1 MKKRGWQSRFLVEAVGLLFFLLLGNA 26 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~l~~~ 26 (144)
||+..+++.+++.++++++++..+..
T Consensus 1 MK~~~~~K~~v~~av~~~s~~~~~~~ 26 (132)
T PF12930_consen 1 MKTTVFMKALVLSAVVAVSVLNTSAS 26 (132)
T ss_dssp --------------------------
T ss_pred CceehHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999998888777555544443
No 351
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=33.08 E-value=1.9e+02 Score=22.06 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=38.2
Q ss_pred CCCccchhHHHHHHhhhcC-CcEEEEe------cCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHH
Q 032253 28 TATEADHSVSAFVQNSIFS-NKIVIFS------KSYCPYCLRAKRIFADLNEQPFVVELDLRDDGA 86 (144)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~-~~Vvvf~------~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~ 86 (144)
...+........+...... .+=+.|. ..+-+|-.+++..|.+++.. +.++++...+.
T Consensus 12 ~~~~~~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~--v~~L~l~~~~~ 75 (224)
T COG3340 12 SFEDVLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLE--VSELHLSKPPL 75 (224)
T ss_pred ccchhhhhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCe--eeeeeccCCCH
Confidence 3444455666667765555 3333332 24678999999999999976 67888877654
No 352
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=32.78 E-value=30 Score=24.94 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=18.9
Q ss_pred CCcccEEEECCEEEeccCCcchhhhh
Q 032253 98 RRTVPQIFVNGEHIGGADGWSQLSLA 123 (144)
Q Consensus 98 ~~~vP~vfi~g~~igg~~e~~~~~~~ 123 (144)
-..-|.+.|||+.+|+.++ +.|.++
T Consensus 128 C~~AP~vmind~~~~~lt~-e~l~ei 152 (160)
T COG1905 128 CGQAPVVMINDDVYGRLTP-EKLEEI 152 (160)
T ss_pred cccCCEEEECCchhccCCH-HHHHHH
Confidence 3568999999999999887 333333
No 353
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=32.76 E-value=2.5e+02 Score=22.21 Aligned_cols=33 Identities=3% Similarity=-0.092 Sum_probs=22.1
Q ss_pred HHHhhhcCCcEEEEecCCChh--HHHHHHHHHhcC
Q 032253 39 FVQNSIFSNKIVIFSKSYCPY--CLRAKRIFADLN 71 (144)
Q Consensus 39 ~~~~~~~~~~Vvvf~~~~Cp~--C~~~~~~L~~~~ 71 (144)
..+....+..|.+|-+++++. ++.+...+++..
T Consensus 58 ~~~~~~~~~ei~vyl~~~~~~~~~~~l~~~L~~~~ 92 (309)
T PRK11026 58 AATQWYPSPQLTVYLDKTLDDDAANAVVEQLKAED 92 (309)
T ss_pred HHHhhccCceEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 334444556799999998875 456666776654
No 354
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=32.64 E-value=13 Score=18.96 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 032253 9 RFLVEAVGLLFFLLLGNAPTA 29 (144)
Q Consensus 9 ~~~~~~~~~~~~l~l~~~~~~ 29 (144)
++..+++.++|+++++..+..
T Consensus 4 ~Lg~~~lAi~c~LL~s~Ls~V 24 (30)
T PF11466_consen 4 HLGGWWLAIVCVLLFSHLSSV 24 (30)
T ss_dssp S-SSHHHHHHHHHHHHHTTTT
T ss_pred chhhHHHHHHHHHHHHHhhHH
Confidence 345566777788887776643
No 355
>PHA02655 hypothetical protein; Provisional
Probab=32.29 E-value=92 Score=19.41 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHhhhcCCcEEEEecCCChhHHHH
Q 032253 4 RGWQSRFLVEAVGLLFFLLLGNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRA 63 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~ 63 (144)
.+|.+.+.+-.++.+.+.+..-. ..+..+.++.+-.+-+.++|+----|+-.-+
T Consensus 23 ndwshyfiitflvslfisicfii------kldikeiiknqytmlkfvvftiylipfvivm 76 (94)
T PHA02655 23 NDWSHYFIITFLVSLFISICFII------KLDIKEIIKNQYTMLKFVVFTIYLIPFVIVM 76 (94)
T ss_pred ccchhhhHHHHHHHHHHHhHhee------eecHHHHHhhhhheehheeehhhHHHHHHHH
Confidence 37888887665555433333222 3567888888888888999986555654433
No 356
>PLN00019 photosystem I reaction center subunit III; Provisional
Probab=32.02 E-value=2.2e+02 Score=21.62 Aligned_cols=14 Identities=29% Similarity=0.835 Sum_probs=11.8
Q ss_pred CCCcccEEEECCEE
Q 032253 97 GRRTVPQIFVNGEH 110 (144)
Q Consensus 97 g~~~vP~vfi~g~~ 110 (144)
|..+.|++++||++
T Consensus 128 G~DGLPHLIvdG~~ 141 (223)
T PLN00019 128 GADGLPHLIVDGDQ 141 (223)
T ss_pred CCCCCceeecCCCc
Confidence 56799999999973
No 357
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=31.75 E-value=1.3e+02 Score=18.65 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=33.6
Q ss_pred EEEEecCCChhHHHHHH----HHHhcCCCCe-EEEEeCCCCHHHHHHHHHHHcCCCcccEEE
Q 032253 49 IVIFSKSYCPYCLRAKR----IFADLNEQPF-VVELDLRDDGAQIQYILLDLVGRRTVPQIF 105 (144)
Q Consensus 49 Vvvf~~~~Cp~C~~~~~----~L~~~~~~~~-~~~id~~~~~~~~~~~l~~~~g~~~vP~vf 105 (144)
..+|....-|...++.+ ++++.--.++ ..-+|+.++++ +.+....-.+|+++
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~-----lAe~~~ivAtPtLv 60 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ-----LAEEDKIVATPTLV 60 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh-----HHhhCCEEEechhh
Confidence 56788777788876655 4444321233 67789998875 55666677777753
No 358
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.33 E-value=93 Score=23.15 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.2
Q ss_pred CCCcccEEEECCEEEeccCC
Q 032253 97 GRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 97 g~~~vP~vfi~g~~igg~~e 116 (144)
|.-+.|++|++++..-|.|.
T Consensus 173 GvfGaPtfivg~q~fwGqDR 192 (203)
T COG3917 173 GVFGAPTFIVGDQLFWGQDR 192 (203)
T ss_pred CccCCCeEEECCeeeechhH
Confidence 67789999999999999998
No 359
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=30.51 E-value=44 Score=22.34 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=11.4
Q ss_pred ecCCChhHHHHHHHHH
Q 032253 53 SKSYCPYCLRAKRIFA 68 (144)
Q Consensus 53 ~~~~Cp~C~~~~~~L~ 68 (144)
-.+.||.|.+-+.-|.
T Consensus 30 ~~s~Cp~C~kkraeLa 45 (104)
T PF15379_consen 30 NSSQCPSCNKKRAELA 45 (104)
T ss_pred CcccChHHHHHHHHHH
Confidence 3588999987765443
No 360
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=30.48 E-value=1.2e+02 Score=21.59 Aligned_cols=45 Identities=18% Similarity=0.388 Sum_probs=22.8
Q ss_pred EEEEecCCCh-hHHHHH----HHHHhcC---CCC--eEEEEeCCCC-HHHHHHHHH
Q 032253 49 IVIFSKSYCP-YCLRAK----RIFADLN---EQP--FVVELDLRDD-GAQIQYILL 93 (144)
Q Consensus 49 Vvvf~~~~Cp-~C~~~~----~~L~~~~---~~~--~~~~id~~~~-~~~~~~~l~ 93 (144)
++.|+-..|| -|...- ++.++++ ... .++.+|...| ++.+++..+
T Consensus 56 lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~ 111 (174)
T PF02630_consen 56 LVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAK 111 (174)
T ss_dssp EEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHH
T ss_pred EEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHH
Confidence 6778889998 676433 3333332 111 2556666555 444444333
No 361
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=30.28 E-value=40 Score=25.57 Aligned_cols=19 Identities=21% Similarity=0.614 Sum_probs=15.7
Q ss_pred CCcEEEEecCCChhHHHHH
Q 032253 46 SNKIVIFSKSYCPYCLRAK 64 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~ 64 (144)
+-+|.+|+-+-||+|.+..
T Consensus 40 ~v~ItlyyEaLCPdc~~Fi 58 (220)
T KOG3160|consen 40 KVNITLYYEALCPDCSKFI 58 (220)
T ss_pred eeEEEEEEEecCccHHHHH
Confidence 3458999999999998664
No 362
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=30.11 E-value=88 Score=17.79 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=13.9
Q ss_pred cCCChhHH-HHHHHHHhcC
Q 032253 54 KSYCPYCL-RAKRIFADLN 71 (144)
Q Consensus 54 ~~~Cp~C~-~~~~~L~~~~ 71 (144)
.-+|+.|. ++++.|.++.
T Consensus 6 ~m~C~~C~~~v~~~l~~~~ 24 (62)
T PF00403_consen 6 GMTCEGCAKKVEKALSKLP 24 (62)
T ss_dssp STTSHHHHHHHHHHHHTST
T ss_pred CcccHHHHHHHHHHHhcCC
Confidence 46899995 6677888874
No 363
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=30.09 E-value=2e+02 Score=20.39 Aligned_cols=28 Identities=14% Similarity=0.459 Sum_probs=19.9
Q ss_pred CCcEEEEe-cCCChhHHHH-HHHHHhcCCC
Q 032253 46 SNKIVIFS-KSYCPYCLRA-KRIFADLNEQ 73 (144)
Q Consensus 46 ~~~Vvvf~-~~~Cp~C~~~-~~~L~~~~~~ 73 (144)
.....||. ++-|++|+.. ..+.++++++
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~ 128 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLK 128 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCC
Confidence 44566666 5889999865 4577788865
No 364
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.01 E-value=1.5e+02 Score=23.85 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=40.3
Q ss_pred cEEEEecCC-----ChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC-CEEEeccCC
Q 032253 48 KIVIFSKSY-----CPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN-GEHIGGADG 116 (144)
Q Consensus 48 ~Vvvf~~~~-----Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~-g~~igg~~e 116 (144)
.+++|+.++ ||.|-.+..++.-.+ .+ ..++...++. +++....|.+..+ |..|+|+++
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~-~~--l~v~~ssN~~--------~s~sg~LP~l~~~ng~~va~~~~ 66 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAG-AP--LKVVVSSNPW--------RSPSGKLPYLITDNGTKVAGPVK 66 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhC-CC--ceeEeecCCC--------CCCCCCCCeEEecCCceeccHHH
Confidence 356666543 999999988887766 33 3555555432 3345569999885 599999988
No 365
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=29.99 E-value=26 Score=20.86 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=10.0
Q ss_pred CCChhHHHHHHHH
Q 032253 55 SYCPYCLRAKRIF 67 (144)
Q Consensus 55 ~~Cp~C~~~~~~L 67 (144)
|-||.|+++-.-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 6799999876544
No 366
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.67 E-value=51 Score=24.55 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=21.5
Q ss_pred HHhhhcCCc-EEEEe-cCCChhHHHHHH-------HHHhcCC
Q 032253 40 VQNSIFSNK-IVIFS-KSYCPYCLRAKR-------IFADLNE 72 (144)
Q Consensus 40 ~~~~~~~~~-Vvvf~-~~~Cp~C~~~~~-------~L~~~~~ 72 (144)
+.+++++++ ||+|. +++|--|++.-+ +|+++|+
T Consensus 44 ~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv 85 (197)
T KOG4498|consen 44 VTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGV 85 (197)
T ss_pred hHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCC
Confidence 445676666 55555 599999996544 5555553
No 367
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=28.34 E-value=58 Score=18.30 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.1
Q ss_pred CCcccEEEECCEEEe
Q 032253 98 RRTVPQIFVNGEHIG 112 (144)
Q Consensus 98 ~~~vP~vfi~g~~ig 112 (144)
..+++.|||||+.+-
T Consensus 17 ~~GI~~V~VNG~~vv 31 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVV 31 (48)
T ss_dssp -BSEEEEEETTEEEE
T ss_pred CCCEEEEEECCEEEE
Confidence 358999999999774
No 368
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=27.85 E-value=1.1e+02 Score=19.69 Aligned_cols=61 Identities=13% Similarity=0.003 Sum_probs=34.6
Q ss_pred chhHHHHHHhhhcCCcEEEEecCCC-hhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHH
Q 032253 33 DHSVSAFVQNSIFSNKIVIFSKSYC-PYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDL 95 (144)
Q Consensus 33 ~~~~~~~~~~~~~~~~Vvvf~~~~C-p~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~ 95 (144)
-..+.+.++.+.+.++-++|.++++ ..-....+.|..+|+. +..=++-.......+.+++.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhc
Confidence 3456777787777766555555554 4446667777999965 22323333444556667775
No 369
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=27.37 E-value=2.5e+02 Score=22.28 Aligned_cols=63 Identities=19% Similarity=0.131 Sum_probs=39.6
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCe--EEEEeCCCC-HH-HHHHHHHHHcCCCcccEEEECCEEE
Q 032253 48 KIVIFSKSYCPYCLRAKRIFADLNEQPF--VVELDLRDD-GA-QIQYILLDLVGRRTVPQIFVNGEHI 111 (144)
Q Consensus 48 ~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~--~~~id~~~~-~~-~~~~~l~~~~g~~~vP~vfi~g~~i 111 (144)
.|.+|+ +.|..-..+-+.....+...+ +...|...+ .+ .+.......+++..|-.|.|+.+.+
T Consensus 78 ~IR~Y~-sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEal 144 (305)
T COG5309 78 SIRTYG-SDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEAL 144 (305)
T ss_pred eEEEee-ccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhhh
Confidence 588898 777777777777777664433 333333222 22 2233444556888999999998876
No 370
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.48 E-value=29 Score=26.49 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=37.6
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCC-Ce--EEEEeCCCCHHHHHHHHHHHcCCCcccEEEE
Q 032253 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQ-PF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFV 106 (144)
Q Consensus 46 ~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~-~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi 106 (144)
..-+.-|..+||.-|..+..+++..... .. +..++.+.. .++...+....+|.+..
T Consensus 18 ~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~-----~eis~~~~v~~vp~~~~ 76 (227)
T KOG0911|consen 18 KLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEF-----PEISNLIAVEAVPYFVF 76 (227)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhh-----hHHHHHHHHhcCceeee
Confidence 3346678899999999999999887621 11 444554443 34556666778888755
No 371
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=26.30 E-value=3.4e+02 Score=21.78 Aligned_cols=81 Identities=12% Similarity=0.033 Sum_probs=52.2
Q ss_pred hHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcCCCCeE-----------EEEeCCCCHHHHHHHHHHHcCCCcccE
Q 032253 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFV-----------VELDLRDDGAQIQYILLDLVGRRTVPQ 103 (144)
Q Consensus 35 ~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~~~~~~-----------~~id~~~~~~~~~~~l~~~~g~~~vP~ 103 (144)
.+.+++.++++..-+.||+-.++..+..+..+.+++++ |++ ..+....+.....-.+.+.+|++++=.
T Consensus 51 ~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~I-P~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~wk~vai 129 (371)
T cd06388 51 AVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHI-SLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWNRFVF 129 (371)
T ss_pred HHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCC-CeeecCccccCCCceEEEeChhhhhHHHHHHHhcCceEEEE
Confidence 55677777888888889998888888999999999883 431 122332221111123456678888877
Q ss_pred EEECCEEEeccCC
Q 032253 104 IFVNGEHIGGADG 116 (144)
Q Consensus 104 vfi~g~~igg~~e 116 (144)
++-.+.-.+..+.
T Consensus 130 iYd~~~~~~~lq~ 142 (371)
T cd06388 130 LYDTDRGYSILQA 142 (371)
T ss_pred EecCCccHHHHHH
Confidence 7764554455444
No 372
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=25.96 E-value=2.2e+02 Score=23.80 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCC-CCeEEEEeCCCCHHHHHHHHHHHcCC---------CcccEEEECCEEEeccCCcchhhhh------
Q 032253 60 CLRAKRIFADLNE-QPFVVELDLRDDGAQIQYILLDLVGR---------RTVPQIFVNGEHIGGADGWSQLSLA------ 123 (144)
Q Consensus 60 C~~~~~~L~~~~~-~~~~~~id~~~~~~~~~~~l~~~~g~---------~~vP~vfi~g~~igg~~e~~~~~~~------ 123 (144)
++++..+=+.++. .|.++-. .....++.++.++++.|. ..+|.+-.+|...-..+....++..
T Consensus 92 ~~qi~~l~~~~~~~iPl~iMt-S~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~G 170 (420)
T PF01704_consen 92 VEQIEALNKKYGVDIPLYIMT-SFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPG 170 (420)
T ss_dssp HHHHHHHHHHHTTT-EEEEEE-ETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-T
T ss_pred HHHHHHHhccccccceEEEec-CcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccccchhhccCCC
Confidence 4555554455553 3444433 334445667788885542 4566666666533222110112233
Q ss_pred hhHHHHHHHHcCchhHhhc
Q 032253 124 HSTYLKAAVLSGQLQQLLG 142 (144)
Q Consensus 124 ~~~~~~~~~~~g~L~~~l~ 142 (144)
|+.=...|..+|-|++|+.
T Consensus 171 hGdi~~aL~~sG~Ld~l~~ 189 (420)
T PF01704_consen 171 HGDIYRALYNSGLLDKLLA 189 (420)
T ss_dssp GGGHHHHHHHTTHHHHHHH
T ss_pred CcceehhhhccChHHHHHH
Confidence 7777899999999999875
No 373
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=25.89 E-value=2.2e+02 Score=20.23 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=27.0
Q ss_pred cCCChhHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHH
Q 032253 54 KSYCPYCLRAKRIFADLNEQPFVVELDLRDDGAQIQYILLDL 95 (144)
Q Consensus 54 ~~~Cp~C~~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~ 95 (144)
.++=|+|++++..|+++++...+.-......++.+.+.+++.
T Consensus 10 ~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 10 TSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp GGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 456789999999999999532222223356777766665554
No 374
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=25.84 E-value=22 Score=25.15 Aligned_cols=19 Identities=26% Similarity=0.516 Sum_probs=13.5
Q ss_pred EEec-CCChhHHHHHHHHHh
Q 032253 51 IFSK-SYCPYCLRAKRIFAD 69 (144)
Q Consensus 51 vf~~-~~Cp~C~~~~~~L~~ 69 (144)
+|+- -.||+|++....|.-
T Consensus 5 IFGpei~CPhCRQ~ipALtL 24 (163)
T TIGR02652 5 IFGPEIRCPHCRQNIPALTL 24 (163)
T ss_pred ccCCcCcCchhhcccchhee
Confidence 3443 469999999887743
No 375
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=25.82 E-value=2.1e+02 Score=19.53 Aligned_cols=42 Identities=14% Similarity=-0.063 Sum_probs=29.5
Q ss_pred cchhHHHHHHhh-hcCCcEEEEecCCChhHH------------HHHHHHHhcCCC
Q 032253 32 ADHSVSAFVQNS-IFSNKIVIFSKSYCPYCL------------RAKRIFADLNEQ 73 (144)
Q Consensus 32 ~~~~~~~~~~~~-~~~~~Vvvf~~~~Cp~C~------------~~~~~L~~~~~~ 73 (144)
...++.+.++++ .....|++.|......+. ...++|+++++.
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip 79 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP 79 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC
Confidence 345667777766 345667777777776666 778899998854
No 376
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=25.77 E-value=32 Score=24.77 Aligned_cols=7 Identities=29% Similarity=0.804 Sum_probs=6.0
Q ss_pred CCChhHH
Q 032253 55 SYCPYCL 61 (144)
Q Consensus 55 ~~Cp~C~ 61 (144)
.+|.-|+
T Consensus 60 ~~Ca~CH 66 (159)
T TIGR03045 60 TACGTCH 66 (159)
T ss_pred HHHHHhC
Confidence 5799998
No 377
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=25.61 E-value=62 Score=21.56 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=13.1
Q ss_pred CCcccEEEECCEEEe
Q 032253 98 RRTVPQIFVNGEHIG 112 (144)
Q Consensus 98 ~~~vP~vfi~g~~ig 112 (144)
..-.|.+|.||+.+|
T Consensus 79 DECTplvF~n~~Lvg 93 (102)
T PF11399_consen 79 DECTPLVFKNGKLVG 93 (102)
T ss_pred CceEEEEEECCEEEE
Confidence 457999999999987
No 378
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=25.40 E-value=2e+02 Score=18.79 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=14.4
Q ss_pred CcccchHHHHHHHHHHHHH
Q 032253 1 MKKRGWQSRFLVEAVGLLF 19 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (144)
|||-.+.|.++++.+++++
T Consensus 1 mN~yp~WKyllil~vl~~~ 19 (101)
T PF13721_consen 1 MNRYPLWKYLLILVVLLLG 19 (101)
T ss_pred CCCcchHHHHHHHHHHHHH
Confidence 7888888888777766544
No 379
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=25.39 E-value=3.4e+02 Score=21.34 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=58.5
Q ss_pred CCccchhHHHHHHhhhcCCcEEEEecCC--Ch--hHHHHHHHHHhcCCCCeEEEEeCCC-----C--------HHHHHHH
Q 032253 29 ATEADHSVSAFVQNSIFSNKIVIFSKSY--CP--YCLRAKRIFADLNEQPFVVELDLRD-----D--------GAQIQYI 91 (144)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~Vvvf~~~~--Cp--~C~~~~~~L~~~~~~~~~~~id~~~-----~--------~~~~~~~ 91 (144)
|-..++++...+..-....+|+-+|-.+ -| .|..++..-.++|+.+.++++|... + ...+.+.
T Consensus 25 SGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~ 104 (269)
T COG1606 25 SGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYST 104 (269)
T ss_pred cCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHH
Confidence 4466777776666433335566665443 33 5778999999999887778887655 1 1223445
Q ss_pred HHHHcCCCcccEEEECCEEEeccCCcchhhhhhhHHHHHHHHcCc
Q 032253 92 LLDLVGRRTVPQIFVNGEHIGGADGWSQLSLAHSTYLKAAVLSGQ 136 (144)
Q Consensus 92 l~~~~g~~~vP~vfi~g~~igg~~e~~~~~~~~~~~~~~~~~~g~ 136 (144)
+.+.....+++.|+ ||.......+ .+|++++..+-|-
T Consensus 105 l~~~a~~~Gyd~V~-dGtNasDl~~-------~RPG~rA~kE~gi 141 (269)
T COG1606 105 LVEEAEKRGYDVVA-DGTNASDLFD-------YRPGLRALKELGI 141 (269)
T ss_pred HHHHHHHcCCCEEE-eCCcHHHhcC-------CCcchhhHHhcCC
Confidence 55555556666554 4543322222 4556666655543
No 380
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=25.14 E-value=1.1e+02 Score=18.35 Aligned_cols=17 Identities=12% Similarity=0.577 Sum_probs=13.8
Q ss_pred CCChhHH-HHHHHHHhcC
Q 032253 55 SYCPYCL-RAKRIFADLN 71 (144)
Q Consensus 55 ~~Cp~C~-~~~~~L~~~~ 71 (144)
-+|++|. .++..|....
T Consensus 11 MtC~~C~~~V~~al~~v~ 28 (71)
T COG2608 11 MTCGHCVKTVEKALEEVD 28 (71)
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 5799995 6678999886
No 381
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=25.00 E-value=23 Score=25.06 Aligned_cols=15 Identities=20% Similarity=0.436 Sum_probs=11.9
Q ss_pred CCChhHHHHHHHHHh
Q 032253 55 SYCPYCLRAKRIFAD 69 (144)
Q Consensus 55 ~~Cp~C~~~~~~L~~ 69 (144)
-.||+|++....|.-
T Consensus 7 i~CPhCRq~ipALtL 21 (161)
T PF09654_consen 7 IQCPHCRQTIPALTL 21 (161)
T ss_pred CcCchhhcccchhee
Confidence 369999999887743
No 382
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=24.97 E-value=50 Score=25.73 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHHHHHHHHcCC
Q 032253 4 RGWQSRFLVEAVGLLFFLLLGNA 26 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~l~~~ 26 (144)
++|+++.+...++++.++.+.+.
T Consensus 7 ~Gwrk~cly~~vllL~il~iiNL 29 (264)
T PF04790_consen 7 YGWRKRCLYLFVLLLFILAIINL 29 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 57888877776666666655554
No 383
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=24.82 E-value=4.2e+02 Score=22.22 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHhcC--CCCeEEEEeCCCCHHHHHHHHHHHcC----CCcccEEEE-CC---EEEeccCC
Q 032253 58 PYCLRAKRIFADLN--EQPFVVELDLRDDGAQIQYILLDLVG----RRTVPQIFV-NG---EHIGGADG 116 (144)
Q Consensus 58 p~C~~~~~~L~~~~--~~~~~~~id~~~~~~~~~~~l~~~~g----~~~vP~vfi-~g---~~igg~~e 116 (144)
...++++++|..+- -+.|++.+|...+..+ +.++..... ....|.|++ .. -.+||++-
T Consensus 89 ~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~e-r~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~ 156 (421)
T PLN03183 89 GDLEKLWRTLRALYHPRNQYVVHLDLESPAEE-RLELASRVENDPMFSKVGNVYMITKANLVTYRGPTM 156 (421)
T ss_pred CcHHHHHHHHHHhcCCCceEEEEecCCCChHH-HHHHHHHhhccchhhccCcEEEEecceeeccCChHH
Confidence 57788999998873 2335888888765433 334443321 245788876 22 24588876
No 384
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=24.75 E-value=45 Score=24.20 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=16.2
Q ss_pred CcccEEEECCEEEeccCC
Q 032253 99 RTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 99 ~~vP~vfi~g~~igg~~e 116 (144)
..-|.+.|||+.+|+.+.
T Consensus 140 ~~AP~~~Vn~~~~~~lt~ 157 (169)
T PRK07571 140 GIAPAVVFDGKVAGKQTP 157 (169)
T ss_pred CCCCeEEECCEEeCCCCH
Confidence 568999999999999987
No 385
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=24.46 E-value=3.2e+02 Score=21.03 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=46.9
Q ss_pred cchhHHHHHHhhhcCCcEEEEecCCChhHH-HHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEE
Q 032253 32 ADHSVSAFVQNSIFSNKIVIFSKSYCPYCL-RAKRIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEH 110 (144)
Q Consensus 32 ~~~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~-~~~~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~ 110 (144)
+-..+.++++.+-.++-.|=|.+++-..++ ....-|..++.. +.+-++...-...++.+.+. +.-|.+++++..
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~tsl~aa~~~~~~~---~lrP~l~v~d~a 98 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIFTSLPAARQYLEEN---QLRPYLIVDDDA 98 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhcCccHHHHHHHHhc---CCCceEEEcccc
Confidence 344567777887767766777777777664 456677777754 33444444333334445443 556888886654
Q ss_pred Eecc
Q 032253 111 IGGA 114 (144)
Q Consensus 111 igg~ 114 (144)
.-.|
T Consensus 99 ~~dF 102 (262)
T KOG3040|consen 99 LEDF 102 (262)
T ss_pred hhhC
Confidence 4333
No 386
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=24.16 E-value=79 Score=22.56 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=17.8
Q ss_pred cCCCCCCccchhHHHHHHhhhcCCcEEEEecCC
Q 032253 24 GNAPTATEADHSVSAFVQNSIFSNKIVIFSKSY 56 (144)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~Vvvf~~~~ 56 (144)
+..-.....+.+..++++. ++..+|.+|++.+
T Consensus 46 G~w~d~G~~d~~~~~fl~~-l~~KkV~lF~T~G 77 (160)
T PF12641_consen 46 GFWIDKGTPDKDMKEFLKK-LKGKKVALFGTAG 77 (160)
T ss_pred EcCccCCCCCHHHHHHHHH-ccCCeEEEEEecC
Confidence 3333333445666666666 3455677777654
No 387
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=24.06 E-value=54 Score=27.45 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=25.6
Q ss_pred hhHHHHHHhhhcC-CcEEEEecCCChhHHHHH----HHHHhcCCCCeEEEEeC
Q 032253 34 HSVSAFVQNSIFS-NKIVIFSKSYCPYCLRAK----RIFADLNEQPFVVELDL 81 (144)
Q Consensus 34 ~~~~~~~~~~~~~-~~Vvvf~~~~Cp~C~~~~----~~L~~~~~~~~~~~id~ 81 (144)
....+..+++.+. -..++.+ |+||.|++-- +-+++.| .|.+.-..+
T Consensus 323 ~~g~eIa~~Lk~dgVDAvILt-stCgtCtrcga~m~keiE~~G-IPvV~i~~~ 373 (431)
T TIGR01917 323 QFAKEFSKELLAAGVDAVILT-STUGTCTRCGATMVKEIERAG-IPVVHICTV 373 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEc-CCCCcchhHHHHHHHHHHHcC-CCEEEEeec
Confidence 3445555555544 4466664 8888887654 4556667 354333333
No 388
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=23.91 E-value=84 Score=20.71 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCC
Q 032253 7 QSRFLVEAVGLLFFLLLGNAPTA 29 (144)
Q Consensus 7 ~~~~~~~~~~~~~~l~l~~~~~~ 29 (144)
|+++.+.++++.++++.+|...+
T Consensus 1 M~k~l~sal~~~~~L~~GCAsts 23 (96)
T PF11839_consen 1 MKKLLLSALALAALLLAGCASTS 23 (96)
T ss_pred CchHHHHHHHHHHHHHhHccCCc
Confidence 45666677776566666887644
No 389
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=23.50 E-value=49 Score=27.68 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=35.2
Q ss_pred chhHHHHHHhhhcC-CcEEEEecCCChhHHHHH----HHHHhcCCCCeEEEEeCCCCHHHHHHHHHHHcCCCcccEEEEC
Q 032253 33 DHSVSAFVQNSIFS-NKIVIFSKSYCPYCLRAK----RIFADLNEQPFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVN 107 (144)
Q Consensus 33 ~~~~~~~~~~~~~~-~~Vvvf~~~~Cp~C~~~~----~~L~~~~~~~~~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~ 107 (144)
.....+..+++.+. ...++.+ ++||.|.+-- +-+++.| .|.+.-..+..-.. .....+.||.+=|.
T Consensus 322 ~~~g~eIa~~Lk~dgVDAVILT-stCgtC~r~~a~m~keiE~~G-iPvv~~~~~~pis~-------tvGanrivp~~~ip 392 (431)
T TIGR01918 322 KQFAKEFVVELKQGGVDAVILT-STUGTCTRCGATMVKEIERAG-IPVVHMCTVIPIAL-------TVGANRIVPTIAIP 392 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEc-CCCCcchhHHHHHHHHHHHcC-CCEEEEeecccHhh-------hcCccceecccCcC
Confidence 34445555565544 4466664 8888887654 4455667 35433334432111 12234667777664
No 390
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=22.67 E-value=39 Score=26.62 Aligned_cols=23 Identities=17% Similarity=-0.120 Sum_probs=15.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHH
Q 032253 1 MKKRGWQSRFLVEAVGLLFFLLL 23 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~l 23 (144)
|||+.|---.+++.+++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (331)
T PRK03598 1 MKKKVVIGLAVVVLAAAVAGGWW 23 (331)
T ss_pred CCceEEEEhHHHHHHHHHHHhee
Confidence 89999977776666666544443
No 391
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=22.30 E-value=2.7e+02 Score=19.14 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=43.5
Q ss_pred CCCCCccchhHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcC----CCCeEEEEeCCCCHHHHHHHHHHHcCCC--
Q 032253 26 APTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRDDGAQIQYILLDLVGRR-- 99 (144)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~----~~~~~~~id~~~~~~~~~~~l~~~~g~~-- 99 (144)
.+.-...+.+..+.+...-.+.-+++|...........+..+.+.. ....+..+|....+. +....|..
T Consensus 76 ~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~-----~~~~~~i~~~ 150 (184)
T PF13848_consen 76 FPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR-----LLKYFGIDED 150 (184)
T ss_dssp STSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH-----HHHHTTTTTS
T ss_pred cccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH-----HHHHcCCCCc
Confidence 3434444444444333332222366666667777777777666653 122378888885533 33355655
Q ss_pred cccEEEE
Q 032253 100 TVPQIFV 106 (144)
Q Consensus 100 ~vP~vfi 106 (144)
.+|++.|
T Consensus 151 ~~P~~vi 157 (184)
T PF13848_consen 151 DLPALVI 157 (184)
T ss_dssp SSSEEEE
T ss_pred cCCEEEE
Confidence 8999986
No 392
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=22.10 E-value=55 Score=23.33 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=16.2
Q ss_pred CcccEEEECCEEEeccCC
Q 032253 99 RTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 99 ~~vP~vfi~g~~igg~~e 116 (144)
..-|.+.|||+++++...
T Consensus 127 ~~aP~~~in~~~~~~lt~ 144 (156)
T PRK05988 127 ACSPAAMLDGEVHGRLDP 144 (156)
T ss_pred CCCCeEEECCEEeCCCCH
Confidence 568999999999999987
No 393
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=21.88 E-value=83 Score=25.00 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=12.0
Q ss_pred chHHHHHHHHHHHH
Q 032253 5 GWQSRFLVEAVGLL 18 (144)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (144)
-|||+|+++++++.
T Consensus 17 ~Wq~~FLtwGIlIA 30 (294)
T PF04332_consen 17 FWQRRFLTWGILIA 30 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999998874
No 394
>PRK15137 DNA-specific endonuclease I; Provisional
Probab=21.81 E-value=1.3e+02 Score=23.13 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=14.5
Q ss_pred hhHHHHHHhhhcCCcEEEEecCCChh
Q 032253 34 HSVSAFVQNSIFSNKIVIFSKSYCPY 59 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~Vvvf~~~~Cp~ 59 (144)
+.++..+.++-.+++..+|- +|.+
T Consensus 29 ~~AKk~~~~iy~~~~~tfYC--gc~~ 52 (235)
T PRK15137 29 SQAKAAAVKVHADAPGTFYC--GCKI 52 (235)
T ss_pred HHHHHHHHHHhcCCCCcEEe--cCEe
Confidence 45555566666677777763 4444
No 395
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=21.72 E-value=64 Score=18.51 Aligned_cols=13 Identities=31% Similarity=0.743 Sum_probs=10.1
Q ss_pred CCChhHHHHHHHH
Q 032253 55 SYCPYCLRAKRIF 67 (144)
Q Consensus 55 ~~Cp~C~~~~~~L 67 (144)
.-||.|++++.--
T Consensus 34 ~RC~~CR~~rk~~ 46 (49)
T PF13451_consen 34 KRCPSCRQARKQR 46 (49)
T ss_pred ccCHHHHHHHHHh
Confidence 4699999988643
No 396
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.54 E-value=1.6e+02 Score=18.90 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 88 IQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 88 ~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
..+.+++......+|...|+....|-.+-
T Consensus 63 ~~~~i~~~~~~~~ipv~~I~~~~Y~~mdg 91 (95)
T TIGR00853 63 MLPDLKKETDKKGIPVEVINGAQYGKLTG 91 (95)
T ss_pred HHHHHHHHhhhcCCCEEEeChhhcccCCc
Confidence 35567777667789999999888877663
No 397
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=21.08 E-value=3.2e+02 Score=19.50 Aligned_cols=40 Identities=3% Similarity=-0.088 Sum_probs=27.6
Q ss_pred hhHHHHHHhhhcCCcEE-EEecCCC-hhHHHHHHHHHhcCCC
Q 032253 34 HSVSAFVQNSIFSNKIV-IFSKSYC-PYCLRAKRIFADLNEQ 73 (144)
Q Consensus 34 ~~~~~~~~~~~~~~~Vv-vf~~~~C-p~C~~~~~~L~~~~~~ 73 (144)
.|..+.+.+...+.+-. .+-.+.. +|-......|+..|+-
T Consensus 38 ~D~v~qL~~~ypPA~Tt~~l~q~~~D~Fg~aL~~aLR~~GYa 79 (151)
T PRK13883 38 TDAVQQLATLYPPAQTRFELQQPTPDAFGQALVKALRDKGYA 79 (151)
T ss_pred HHHHHHHHHhCCCcceEEEEecCCCcHHHHHHHHHHHHcCeE
Confidence 45556666666665533 3445566 8999999999999954
No 398
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.91 E-value=80 Score=18.66 Aligned_cols=10 Identities=40% Similarity=1.056 Sum_probs=9.1
Q ss_pred EEEECCEEEe
Q 032253 103 QIFVNGEHIG 112 (144)
Q Consensus 103 ~vfi~g~~ig 112 (144)
.|++||+++|
T Consensus 14 ~V~vdg~~~G 23 (71)
T PF08308_consen 14 EVYVDGKYIG 23 (71)
T ss_pred EEEECCEEec
Confidence 6899999998
No 399
>COG5204 SPT4 Transcription elongation factor SPT4 [Transcription]
Probab=20.81 E-value=30 Score=22.89 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=10.5
Q ss_pred EEEecCCChhHHH
Q 032253 50 VIFSKSYCPYCLR 62 (144)
Q Consensus 50 vvf~~~~Cp~C~~ 62 (144)
-.|-+++||.|..
T Consensus 22 n~F~~dGCpNc~~ 34 (112)
T COG5204 22 NGFRKDGCPNCPM 34 (112)
T ss_pred ccccccCCCCCcc
Confidence 3578899999974
No 400
>PRK01889 GTPase RsgA; Reviewed
Probab=20.78 E-value=2.6e+02 Score=22.55 Aligned_cols=54 Identities=24% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHHHHHHHh---cCCCCe--EEEEeCCCCHHHHHHHHHHHcCCCcccEEEECCEEEeccCC
Q 032253 61 LRAKRIFAD---LNEQPF--VVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 61 ~~~~~~L~~---~~~~~~--~~~id~~~~~~~~~~~l~~~~g~~~vP~vfi~g~~igg~~e 116 (144)
....++|.. .++.+. +.++|..++.+...+.+... ...+|.+++.-+.=-|.++
T Consensus 129 ~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~~ 187 (356)
T PRK01889 129 RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEGLDV 187 (356)
T ss_pred hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCccHHH
Confidence 355565544 455543 55667755533223344444 3457777775433335555
No 401
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=20.73 E-value=1.1e+02 Score=23.43 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHH-HHHHHcCCCCCCc-cchhHHHHHHhhhcCCcEEEEecCCChhHHHHHHHHHhcC
Q 032253 7 QSRFLVEAVGLL-FFLLLGNAPTATE-ADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN 71 (144)
Q Consensus 7 ~~~~~~~~~~~~-~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~Vvvf~~~~Cp~C~~~~~~L~~~~ 71 (144)
|+++++.+++++ ++.+++|..+... ...... ..-+.+..-+.-+.=-|.+|.-++-.|.-..
T Consensus 2 mkk~~~~~~~a~~l~~l~gC~~~~~~~~~~~~~---~~~l~p~~gtY~G~LPCADC~GI~ttLtL~~ 65 (234)
T PRK10523 2 MKKAIITALAAAGLFTLMGCNNRAEVDTLSPAQ---AAELKPMQQSWRGVLPCADCEGIETSLFLEK 65 (234)
T ss_pred chHHHHHHHHHHHHHHhhccCCccccccccccc---ccccCccccEEeEEEECCCCCCceEEEEEcC
Confidence 456666665554 4567788765431 111111 1123344445556677999987766544433
No 402
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=20.26 E-value=94 Score=20.61 Aligned_cols=18 Identities=33% Similarity=0.700 Sum_probs=14.8
Q ss_pred CcccEEEECCEEEeccCC
Q 032253 99 RTVPQIFVNGEHIGGADG 116 (144)
Q Consensus 99 ~~vP~vfi~g~~igg~~e 116 (144)
..-|.|+|||+.+|....
T Consensus 40 ~~~~~v~vdg~~ig~l~~ 57 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKN 57 (117)
T ss_pred cccceEEECCEEEEEeCC
Confidence 456899999999988765
No 403
>PRK02935 hypothetical protein; Provisional
Probab=20.09 E-value=22 Score=23.84 Aligned_cols=16 Identities=19% Similarity=0.827 Sum_probs=13.7
Q ss_pred CChhHHHHHHHHHhcC
Q 032253 56 YCPYCLRAKRIFADLN 71 (144)
Q Consensus 56 ~Cp~C~~~~~~L~~~~ 71 (144)
+||.|.+..+.|-+..
T Consensus 72 ~CP~C~K~TKmLGrvD 87 (110)
T PRK02935 72 ICPSCEKPTKMLGRVD 87 (110)
T ss_pred ECCCCCchhhhcccee
Confidence 7999999999887764
Done!