BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032255
MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE
FVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGG
TGGSSAHAHPSVPFDARFPEDAGQ

High Scoring Gene Products

Symbol, full name Information P value
MED32
AT1G11760 		protein from Arabidopsis thaliana 5.7e-43

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032255
        (144 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2027377 - symbol:MED32 "AT1G11760" species:370...   454  5.7e-43   1


>TAIR|locus:2027377 [details] [associations]
            symbol:MED32 "AT1G11760" species:3702 "Arabidopsis
            thaliana" [GO:0016592 "mediator complex" evidence=IDA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006355 GO:GO:0006351
            EMBL:AC007296 GO:GO:0016592 EMBL:AK228068 EMBL:BT004763
            IPI:IPI00535441 IPI:IPI00852261 PIR:D86251 RefSeq:NP_172641.2
            UniGene:At.48180 IntAct:Q84VW5 STRING:Q84VW5 PRIDE:Q84VW5
            EnsemblPlants:AT1G11760.1 GeneID:837720 KEGG:ath:AT1G11760
            KEGG:dosa:Os10t0548400-00 TAIR:At1g11760 eggNOG:NOG236150
            OMA:EQMSKAV PhylomeDB:Q84VW5 ProtClustDB:CLSN2698244
            Genevestigator:Q84VW5 Uniprot:Q84VW5
        Length = 151

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 97/151 (64%), Positives = 111/151 (73%)

Query:     1 MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
             MDNIVD+L+ AY++FV A+A VLE+KE +  QK   TD ALENFK++WELFRVACDQAEE
Sbjct:     1 MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query:    61 FVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----LPPISAVRLEQMSKAVRWLV 113
             FVESVKQRIGSECLVDEATG   + AG    AA TG    LPPISAVRLEQMS+AVRWLV
Sbjct:    61 FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query:   114 IELQXXXXXXXXXXXXPSVPFDARFPEDAGQ 144
             +ELQ             S  FD+RF ED+ Q
Sbjct:   121 LELQRGSGVAPGSVHSSSTGFDSRFSEDSTQ 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.127   0.352    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       132   0.00091  102 3  11 23  0.42    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  119 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.77u 0.11s 12.88t   Elapsed:  00:00:00
  Total cpu time:  12.77u 0.11s 12.88t   Elapsed:  00:00:00
  Start:  Fri May 10 23:22:04 2013   End:  Fri May 10 23:22:04 2013

Back to top