BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032255
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84VW5|MED32_ARATH Mediator of RNA polymerase II transcription subunit 32
OS=Arabidopsis thaliana GN=MED32 PE=1 SV=1
Length = 151
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 116/152 (76%), Gaps = 9/152 (5%)
Query: 1 MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
MDNIVD+L+ AY++FV A+A VLE+KE + QK TD ALENFK++WELFRVACDQAEE
Sbjct: 1 MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60
Query: 61 FVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----LPPISAVRLEQMSKAVRWLV 113
FVESVKQRIGSECLVDEATG + AG AA TG LPPISAVRLEQMS+AVRWLV
Sbjct: 61 FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120
Query: 114 IELQHG-GTGGSSAHAHPSVPFDARFPEDAGQ 144
+ELQ G G S H+ S FD+RF ED+ Q
Sbjct: 121 LELQRGSGVAPGSVHSS-STGFDSRFSEDSTQ 151
>sp|Q8BH82|NAPEP_MOUSE N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D OS=Mus
musculus GN=Napepld PE=1 SV=1
Length = 396
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 74 LVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGGTGGSSAHAHPSVP 133
L ++ T S GK G+ P + + +RWL++E H G GS +P
Sbjct: 50 LEEDVTKSKKGKDGRFVN----PWPTWKNISIPNVLRWLIMEKNHSGVPGSKEELDKELP 105
Query: 134 FDARF----PEDAG 143
+ PEDAG
Sbjct: 106 VLKPYFVSDPEDAG 119
>sp|P07673|INCC2_ECOLX Protein IncC OS=Escherichia coli GN=incC PE=3 SV=1
Length = 364
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 47 RWE----LFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGL--PPISAV 100
RWE + VA V S R+G + A G AG G A T+G+ P + +
Sbjct: 37 RWEATGDVRNVAGTDQGRSVASGASRVGRVRGQELARGVRAGNGGSAGTSGVHRPEVGSG 96
Query: 101 RLEQM-SKAVRWLVIELQHGGTGGSSAHAHPSVPF 134
R E+ ++ ++ LV Q GG G +S H + F
Sbjct: 97 RQEKTGNQTMKTLVTANQKGGVGKTSTLVHLAFDF 131
>sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2
Length = 568
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 29 SVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSG 87
S A+K D + F+Q WE D + VES++ R+ VD++ G +A +G
Sbjct: 325 SQAEKLKELDKEIRPFRQNWE----EADSMKSSVESLQNRVTELESVDKSAGQVARNTG 379
>sp|Q8JHV6|LAMB4_DANRE Laminin subunit beta-4 OS=Danio rerio GN=lamb4 PE=2 SV=1
Length = 1827
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 1 MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFK-QRWEL----FRVAC 55
+++I + + Y EF + V AK++ A + LE K Q E+ +V
Sbjct: 1380 VNDIFNKIKKFYDEFTDSEKKVEAAKKVQEASRKTREKVTLELAKCQIGEMDKLERKVKA 1439
Query: 56 DQAEEFVESVKQRIG-SECLVDEATGSLAGKSGQAATTGLPPIS--AVRLEQMSK 107
A E V G +EC + G+L GK G TG PIS A +L +M++
Sbjct: 1440 LSAANINEEVCGAPGDAECEKAKCGGALCGKCGGPDCTGSLPISLNASKLAEMTE 1494
>sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 OS=Mus musculus GN=Traf3 PE=1 SV=2
Length = 567
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 29 SVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSG 87
S A+K D + F+Q WE D + VES++ R+ VD++ G A +G
Sbjct: 324 SQAEKLKELDKEIRPFRQNWE----EADSMKSSVESLQNRVTELESVDKSAGQAARNTG 378
>sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis elegans GN=lam-2 PE=1
SV=3
Length = 1633
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 9 SSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQR 68
S A K+ + AA L + + SVAQ DAA EN +RWE+ + A +E+V
Sbjct: 1114 SKAIKDEIVAALEKLTSIDESVAQAKVGADAA-ENDMKRWEII---IENARREIENVLHY 1169
Query: 69 IGSE 72
+ +E
Sbjct: 1170 LETE 1173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,339,327
Number of Sequences: 539616
Number of extensions: 1759732
Number of successful extensions: 3995
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3988
Number of HSP's gapped (non-prelim): 17
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)