Query 032255
Match_columns 144
No_of_seqs 19 out of 21
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 18:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fiq_A Putative tagatose 6-pho 65.2 2.6 8.9E-05 36.5 1.9 64 53-123 188-262 (420)
2 3lhp_S 4E10_D0_1ISEA_004_N (T9 60.1 5.8 0.0002 29.8 2.7 20 34-53 17-36 (123)
3 3q94_A Fructose-bisphosphate a 39.5 30 0.001 28.3 4.1 56 56-123 162-217 (288)
4 1cn3_F Fragment of coat protei 31.9 21 0.00072 21.1 1.4 12 119-130 2-13 (29)
5 1gvf_A Tagatose-bisphosphate a 28.6 52 0.0018 26.8 3.8 59 53-123 155-213 (286)
6 3pm6_A Putative fructose-bisph 27.5 45 0.0015 27.8 3.3 54 56-122 175-231 (306)
7 1f46_A Cell division protein Z 25.6 1.1E+02 0.0037 22.2 4.7 46 9-54 91-138 (140)
8 3mdq_A Exopolyphosphatase; str 25.2 57 0.002 25.8 3.4 39 35-73 56-106 (315)
9 3elf_A Fructose-bisphosphate a 25.1 43 0.0015 28.2 2.8 54 52-110 181-235 (349)
10 3zyl_A Phosphatidylinositol-bi 20.7 3.1E+02 0.01 21.7 6.8 54 3-66 206-259 (271)
11 2f6m_B Vacuolar protein sortin 20.0 1.1E+02 0.0038 22.2 3.8 21 4-24 40-67 (109)
No 1
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=65.19 E-value=2.6 Score=36.47 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=43.8
Q ss_pred HhhhchHHHHHHHHH---hhcccc-----c-cccccccCCCCCCCCcCCCCCCchhHhHHHHHhhHH-H-HhhhhhcCCC
Q 032255 53 VACDQAEEFVESVKQ---RIGSEC-----L-VDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVR-W-LVIELQHGGT 121 (144)
Q Consensus 53 vACD~AeelVeSvrq---RIgSec-----l-VdeATg~~~~~~~~~aa~g~ppisavRleqmskAVr-w-lvielq~g~g 121 (144)
-.=++|++||+..|+ +-|-+| + +-.+.|+++|.- +.|-+.--||+.++++|. - ||+| |||+.
T Consensus 188 T~PeeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y------~~~~ld~e~l~~I~~~v~~P~LVle-~HGgS 260 (420)
T 2fiq_A 188 THVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHS------NIIHYQPQEAQALAQWIENTRMVYE-AHSTD 260 (420)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSS------CEECCCGGGGHHHHHHHTTSSCEEE-ESCCT
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCC------CCCCcCHHHHHHHHHhcCCCCEEEe-cCCCC
Confidence 345778888885554 444444 1 234688888865 467788889999999985 4 7755 68776
Q ss_pred CC
Q 032255 122 GG 123 (144)
Q Consensus 122 ~~ 123 (144)
|-
T Consensus 261 g~ 262 (420)
T 2fiq_A 261 YQ 262 (420)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 2
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=60.10 E-value=5.8 Score=29.83 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 032255 34 TAATDAALENFKQRWELFRV 53 (144)
Q Consensus 34 taaTDaAle~fkqr~eLF~v 53 (144)
..++|.|.|+|++|+++|-.
T Consensus 17 ~~~~~~~~~~~~n~~~~~~~ 36 (123)
T 3lhp_S 17 EVRMDKAVEAFKNKLDKFKA 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 36799999999999999854
No 3
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=39.50 E-value=30 Score=28.30 Aligned_cols=56 Identities=34% Similarity=0.531 Sum_probs=39.1
Q ss_pred hchHHHHHHHHHhhccccccccccccCCCCCCCCcCCCCCCchhHhHHHHHhhHHHHhhhhhcCCCCC
Q 032255 56 DQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGGTGG 123 (144)
Q Consensus 56 D~AeelVeSvrqRIgSeclVdeATg~~~~~~~~~aa~g~ppisavRleqmskAVrwlvielq~g~g~~ 123 (144)
++|.+||+ +.|-+|| =-+-|++||.-+ |-|-|.--||+++.++|. |==.+||+.|-
T Consensus 162 eea~~Fv~----~TgvD~L-AvaiGt~HG~Y~-----~~p~Ld~~~L~~I~~~v~--vpLVlHGgSG~ 217 (288)
T 3q94_A 162 AECKHLVE----ATGIDCL-APALGSVHGPYK-----GEPNLGFAEMEQVRDFTG--VPLVLHGGTGI 217 (288)
T ss_dssp HHHHHHHH----HHCCSEE-EECSSCBSSCCS-----SSCCCCHHHHHHHHHHHC--SCEEECCCTTC
T ss_pred HHHHHHHH----HHCCCEE-EEEcCcccCCcC-----CCCccCHHHHHHHHHhcC--CCEEEeCCCCC
Confidence 56777776 5564544 367899998742 348899999999999985 22246877653
No 4
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=31.89 E-value=21 Score=21.11 Aligned_cols=12 Identities=50% Similarity=0.961 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCC
Q 032255 119 GGTGGSSAHAHP 130 (144)
Q Consensus 119 g~g~~~~~~~~~ 130 (144)
|+||++|+++|.
T Consensus 2 gggggggaashq 13 (29)
T 1cn3_F 2 GGGGGGGAASHQ 13 (29)
T ss_dssp CCCCCSTTTCCC
T ss_pred CCCCCCcccccc
Confidence 445555555554
No 5
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=28.62 E-value=52 Score=26.81 Aligned_cols=59 Identities=29% Similarity=0.383 Sum_probs=40.6
Q ss_pred HhhhchHHHHHHHHHhhccccccccccccCCCCCCCCcCCCCCCchhHhHHHHHhhHHHHhhhhhcCCCCC
Q 032255 53 VACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGGTGG 123 (144)
Q Consensus 53 vACD~AeelVeSvrqRIgSeclVdeATg~~~~~~~~~aa~g~ppisavRleqmskAVrwlvielq~g~g~~ 123 (144)
--=++|.+||+ +-|-+|| =-+-|++||.-. |-|-|.--||+.+.++|. |==.+||+.|-
T Consensus 155 T~Peea~~Fv~----~TgvD~L-AvaiGt~HG~Y~-----~~p~Ld~~~L~~I~~~~~--vpLVlHGgSG~ 213 (286)
T 1gvf_A 155 TDPQEAKRFVE----LTGVDSL-AVAIGTAHGLYS-----KTPKIDFQRLAEIREVVD--VPLVLHGASDV 213 (286)
T ss_dssp CCHHHHHHHHH----HHCCSEE-EECSSCCSSCCS-----SCCCCCHHHHHHHHHHCC--SCEEECCCTTC
T ss_pred CCHHHHHHHHH----HHCCCEE-EeecCccccCcC-----CCCccCHHHHHHHHHhcC--CCEEEECCCCC
Confidence 33466777776 4565654 467899998753 357788899999999985 22236887653
No 6
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=27.54 E-value=45 Score=27.82 Aligned_cols=54 Identities=33% Similarity=0.481 Sum_probs=36.5
Q ss_pred hchHHHHHHHHHhhccccccccccccCCCCCCCCcCCCCCCchhHhHHHHHhhHH---HHhhhhhcCCCC
Q 032255 56 DQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVR---WLVIELQHGGTG 122 (144)
Q Consensus 56 D~AeelVeSvrqRIgSeclVdeATg~~~~~~~~~aa~g~ppisavRleqmskAVr---wlvielq~g~g~ 122 (144)
++|.+||+ .|-+|| =-+-|++||.-. ++-|-|.--||+.+.++|. -|| +||+.|
T Consensus 175 eea~~Fv~-----TgvD~L-AvaiGt~HG~Yk----~~~p~Ld~~~L~~I~~~v~~~vpLV---lHGgSG 231 (306)
T 3pm6_A 175 EESEEFVA-----TGINWL-APAFGNVHGNYG----PRGVQLDYERLQRINEAVGERVGLV---LHGADP 231 (306)
T ss_dssp HHHHHHHT-----TTCSEE-CCCSSCCSSCCC----TTCCCCCHHHHHHHHHHHTTTSEEE---ECSCTT
T ss_pred HHHHHHHH-----cCCCEE-EEEcCccccCcC----CCCCccCHHHHHHHHHHhCCCCCEE---eeCCCC
Confidence 45566662 565543 467789998752 2347888999999999883 344 588765
No 7
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=25.61 E-value=1.1e+02 Score=22.20 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHh
Q 032255 9 SSAYKEFVAAAANVLEAKEL--SVAQKTAATDAALENFKQRWELFRVA 54 (144)
Q Consensus 9 ~~AY~~fv~AaaavleAke~--~gg~ktaaTDaAle~fkqr~eLF~vA 54 (144)
.++|+.++..|..+-+.=.- -+.++..-|+.+++..++|++-|+.+
T Consensus 91 ~~~F~~M~~~A~~lA~~L~g~llDd~r~~lt~~~~~~ir~~l~~~~~~ 138 (140)
T 1f46_A 91 LQLFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDA 138 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEECTTSCBCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCEEECCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 45688888887776553321 14557788999999999999988754
No 8
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=25.22 E-value=57 Score=25.81 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHh------------hhchHHHHHHHHHhhcccc
Q 032255 35 AATDAALENFKQRWELFRVA------------CDQAEEFVESVKQRIGSEC 73 (144)
Q Consensus 35 aaTDaAle~fkqr~eLF~vA------------CD~AeelVeSvrqRIgSec 73 (144)
.++-.+|+.|+++.+-|.+. -.+.++|++.|+++.|=+.
T Consensus 56 ~r~~~~L~~f~~~~~~~~v~~v~~vATsA~R~A~N~~~fl~~i~~~tG~~i 106 (315)
T 3mdq_A 56 DRALDTLKKFRVILDEHAVVHVIATGTSAVRSGSNKQVLIDRIKKEVNIDV 106 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECHHHHHCTTHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeeHHHHcCcCHHHHHHHHHHHHCCCe
Confidence 45677888999998877652 2577999999999988654
No 9
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=25.14 E-value=43 Score=28.24 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=34.8
Q ss_pred HHhhhchHHHHHHHHH-hhccccccccccccCCCCCCCCcCCCCCCchhHhHHHHHhhHH
Q 032255 52 RVACDQAEEFVESVKQ-RIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVR 110 (144)
Q Consensus 52 ~vACD~AeelVeSvrq-RIgSeclVdeATg~~~~~~~~~aa~g~ppisavRleqmskAVr 110 (144)
+--=++|.+||+..-- -.|-+|| =-+-|++||.-. +|-|-|.--||+.+.++|+
T Consensus 181 yT~Peea~~Fv~~tg~~~~gvD~L-AvaiGt~HG~Yk----~g~p~L~~~~L~~I~~~v~ 235 (349)
T 3elf_A 181 YTSPEDFEKTIEALGAGEHGKYLL-AATFGNVHGVYK----PGNVKLRPDILAQGQQVAA 235 (349)
T ss_dssp CCCHHHHHHHHHHHTTSTTSCEEE-EECSSCBSSCCC----TTSSCCCTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCceEE-EEecCCcccCCC----CCCCccCHHHHHHHHHHHH
Confidence 3445677777764420 1112333 468899998742 3457888899999999984
No 10
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=20.72 E-value=3.1e+02 Score=21.73 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 032255 3 NIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVK 66 (144)
Q Consensus 3 s~Vd~l~~AY~~fv~AaaavleAke~~gg~ktaaTDaAle~fkqr~eLF~vACD~AeelVeSvr 66 (144)
.+|.++-+-|+.+-+...++||.=- ......|.+. +|+|+-.+.|.+++++..+
T Consensus 206 lLv~es~~lY~~in~gii~lLe~ff------em~~~da~~a----leiykrf~~Q~~~L~~Fy~ 259 (271)
T 3zyl_A 206 LLFKDAIRLFAAYNEGIINLLEKYF------DMKKNQCKEG----LDIYKKFLTRMTRISEFLK 259 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGG------GSCHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999998431 0111223333 3477888999999988764
No 11
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=20.04 E-value=1.1e+02 Score=22.16 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=13.6
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHH
Q 032255 4 IVDALSSAY-------KEFVAAAANVLE 24 (144)
Q Consensus 4 ~Vd~l~~AY-------~~fv~Aaaavle 24 (144)
++|.|+||| .+.-.++...|.
T Consensus 40 tle~LEkAyikD~It~~eYt~~c~rLL~ 67 (109)
T 2f6m_B 40 TLDHVEKAYLKDSIDDTQYTNTVDKLLK 67 (109)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 467788888 455556665554
Done!