Query 032257
Match_columns 144
No_of_seqs 119 out of 1069
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2467 Glycine/serine hydroxy 100.0 3.1E-42 6.8E-47 294.1 13.4 136 1-136 340-476 (477)
2 PLN02271 serine hydroxymethylt 100.0 7.3E-39 1.6E-43 285.7 13.3 132 1-136 454-585 (586)
3 COG0112 GlyA Glycine/serine hy 100.0 2E-38 4.3E-43 271.7 12.6 110 1-134 303-413 (413)
4 PLN03226 serine hydroxymethylt 100.0 7.1E-32 1.5E-36 236.7 14.9 143 1-144 333-475 (475)
5 PF00464 SHMT: Serine hydroxym 100.0 2.5E-29 5.5E-34 217.2 7.7 81 1-81 319-399 (399)
6 PRK13580 serine hydroxymethylt 99.9 4.2E-25 9.2E-30 195.2 11.5 130 1-136 358-489 (493)
7 PTZ00094 serine hydroxymethylt 99.8 8.9E-20 1.9E-24 158.1 14.2 131 1-135 322-452 (452)
8 PRK13034 serine hydroxymethylt 99.7 8.2E-17 1.8E-21 138.6 13.6 111 1-133 305-416 (416)
9 PRK00011 glyA serine hydroxyme 99.4 9.4E-12 2E-16 105.7 13.0 112 2-135 303-415 (416)
10 cd00378 SHMT Serine-glycine hy 99.0 5.5E-09 1.2E-13 88.0 11.2 85 2-86 299-384 (402)
11 cd00617 Tnase_like Tryptophana 97.8 6.8E-05 1.5E-09 65.9 7.8 83 2-88 311-409 (431)
12 PRK13238 tnaA tryptophanase/L- 97.6 0.00032 7E-09 61.9 8.4 80 1-86 335-432 (460)
13 TIGR01979 sufS cysteine desulf 89.7 0.85 1.8E-05 38.4 5.7 79 2-86 316-400 (403)
14 PRK06225 aspartate aminotransf 88.9 3.3 7.1E-05 34.7 8.6 69 10-86 307-375 (380)
15 cd00616 AHBA_syn 3-amino-5-hyd 88.5 1.7 3.8E-05 35.4 6.6 76 2-81 253-351 (352)
16 PRK00950 histidinol-phosphate 86.4 4.5 9.7E-05 33.4 7.9 63 11-85 298-360 (361)
17 PLN02721 threonine aldolase 85.4 6.6 0.00014 32.0 8.3 65 8-85 285-350 (353)
18 cd06451 AGAT_like Alanine-glyo 84.8 6.4 0.00014 32.3 8.0 74 2-85 279-355 (356)
19 PRK13520 L-tyrosine decarboxyl 84.5 5.3 0.00011 32.9 7.5 67 2-85 303-369 (371)
20 PRK02731 histidinol-phosphate 83.3 8.2 0.00018 32.0 8.1 62 11-85 303-364 (367)
21 KOG1486 GTP-binding protein DR 81.4 1.9 4.2E-05 36.8 3.6 63 1-64 129-194 (364)
22 PRK05387 histidinol-phosphate 79.2 15 0.00033 30.2 8.3 68 2-85 284-351 (353)
23 TIGR01141 hisC histidinol-phos 78.0 12 0.00027 30.6 7.4 62 2-80 282-344 (346)
24 TIGR01437 selA_rel uncharacter 76.2 10 0.00022 32.2 6.6 62 11-84 299-362 (363)
25 PRK07908 hypothetical protein; 75.0 15 0.00032 30.4 7.1 62 10-86 284-346 (349)
26 PRK10874 cysteine sulfinate de 74.8 15 0.00032 31.0 7.2 71 10-86 324-397 (401)
27 PRK07179 hypothetical protein; 74.5 14 0.00031 31.3 7.1 75 2-86 323-397 (407)
28 PRK09440 avtA valine--pyruvate 73.2 21 0.00046 30.2 7.9 69 12-86 338-410 (416)
29 PLN03227 serine palmitoyltrans 73.1 19 0.00041 30.9 7.5 74 9-86 298-381 (392)
30 PRK06108 aspartate aminotransf 72.8 17 0.00036 30.2 7.0 61 14-85 318-380 (382)
31 PRK08153 histidinol-phosphate 72.7 29 0.00063 29.1 8.5 65 10-86 300-364 (369)
32 PRK13392 5-aminolevulinate syn 72.6 15 0.00033 31.2 6.8 75 2-85 320-395 (410)
33 PLN02822 serine palmitoyltrans 70.7 21 0.00046 31.7 7.5 80 2-86 389-476 (481)
34 TIGR01821 5aminolev_synth 5-am 70.6 15 0.00033 31.0 6.4 75 2-85 319-394 (402)
35 PRK09064 5-aminolevulinate syn 70.4 13 0.00029 31.4 5.9 76 2-86 320-396 (407)
36 COG1163 DRG Predicted GTPase [ 70.0 12 0.00026 32.8 5.6 74 2-78 131-208 (365)
37 PRK00153 hypothetical protein; 69.7 14 0.0003 26.2 5.1 43 70-135 61-103 (104)
38 TIGR01976 am_tr_V_VC1184 cyste 69.7 20 0.00043 30.0 6.8 69 3-79 316-395 (397)
39 PRK05958 8-amino-7-oxononanoat 69.3 18 0.00038 29.8 6.4 74 2-84 311-384 (385)
40 PRK14622 hypothetical protein; 68.0 18 0.00038 26.0 5.3 45 69-136 58-102 (103)
41 PRK14625 hypothetical protein; 67.9 17 0.00038 26.5 5.3 45 70-137 60-106 (109)
42 cd06452 SepCysS Sep-tRNA:Cys-t 67.2 33 0.00071 28.5 7.6 70 2-84 282-359 (361)
43 PRK10534 L-threonine aldolase; 67.1 24 0.00052 28.7 6.7 65 2-85 267-331 (333)
44 PRK08361 aspartate aminotransf 67.1 30 0.00065 29.1 7.4 64 12-85 323-388 (391)
45 cd06454 KBL_like KBL_like; thi 66.9 28 0.00061 28.2 7.0 66 12-83 282-347 (349)
46 TIGR01977 am_tr_V_EF2568 cyste 66.2 16 0.00034 30.2 5.4 66 12-83 304-375 (376)
47 PRK15481 transcriptional regul 66.1 35 0.00076 29.2 7.7 64 12-85 366-429 (431)
48 TIGR02539 SepCysS Sep-tRNA:Cys 65.8 39 0.00084 28.4 7.8 70 2-85 288-366 (370)
49 PRK03321 putative aminotransfe 65.5 35 0.00077 28.0 7.4 55 12-85 295-349 (352)
50 TIGR02326 transamin_PhnW 2-ami 65.1 49 0.0011 27.3 8.2 74 2-85 284-360 (363)
51 PF02575 YbaB_DNA_bd: YbaB/Ebf 65.1 17 0.00037 24.7 4.6 52 59-133 42-93 (93)
52 PRK09331 Sep-tRNA:Cys-tRNA syn 64.9 32 0.0007 29.1 7.2 71 2-85 301-379 (387)
53 PRK03158 histidinol-phosphate 64.2 43 0.00092 27.7 7.7 57 13-84 302-358 (359)
54 cd00609 AAT_like Aspartate ami 62.4 35 0.00075 27.2 6.6 62 10-81 287-348 (350)
55 PRK13479 2-aminoethylphosphona 61.9 51 0.0011 27.2 7.8 54 23-86 309-362 (368)
56 TIGR03301 PhnW-AepZ 2-aminoeth 61.7 35 0.00076 27.6 6.6 73 2-84 279-354 (355)
57 PRK10637 cysG siroheme synthas 61.3 33 0.00072 30.3 6.8 74 11-85 72-147 (457)
58 PRK04366 glycine dehydrogenase 61.1 44 0.00094 29.6 7.6 70 9-86 375-447 (481)
59 PLN00175 aminotransferase fami 61.0 39 0.00084 29.0 7.1 64 12-85 342-411 (413)
60 PRK00451 glycine dehydrogenase 59.3 40 0.00086 29.0 6.9 73 2-84 373-445 (447)
61 PRK09105 putative aminotransfe 59.2 63 0.0014 27.2 8.0 59 11-85 310-368 (370)
62 TIGR03392 FeS_syn_CsdA cystein 59.2 37 0.0008 28.5 6.5 71 10-86 321-394 (398)
63 PLN03026 histidinol-phosphate 59.2 59 0.0013 27.5 7.8 61 10-83 318-378 (380)
64 PRK04870 histidinol-phosphate 58.6 46 0.001 27.5 6.9 58 12-83 297-354 (356)
65 TIGR01814 kynureninase kynuren 58.4 47 0.001 28.2 7.1 57 13-85 348-405 (406)
66 TIGR01885 Orn_aminotrans ornit 58.1 31 0.00068 29.2 6.0 49 24-85 352-400 (401)
67 PF05370 DUF749: Domain of unk 57.9 7.5 0.00016 27.5 1.7 35 8-44 45-79 (87)
68 PRK13393 5-aminolevulinate syn 57.5 32 0.0007 29.2 6.0 76 2-86 319-395 (406)
69 PRK07683 aminotransferase A; V 57.4 62 0.0013 27.3 7.6 65 12-85 316-381 (387)
70 COG1448 TyrB Aspartate/tyrosin 56.7 22 0.00047 31.6 4.8 44 23-84 352-395 (396)
71 PRK07777 aminotransferase; Val 56.3 51 0.0011 27.6 6.9 66 12-83 315-382 (387)
72 TIGR03403 nifS_epsilon cystein 54.5 64 0.0014 26.9 7.2 78 2-85 280-373 (382)
73 PRK14807 histidinol-phosphate 54.5 65 0.0014 26.7 7.2 57 12-83 292-348 (351)
74 TIGR03812 tyr_de_CO2_Arch tyro 54.5 57 0.0012 26.8 6.8 57 10-82 315-371 (373)
75 PRK07392 threonine-phosphate d 53.4 87 0.0019 26.0 7.8 68 2-85 288-357 (360)
76 TIGR03402 FeS_nifS cysteine de 53.2 67 0.0015 26.7 7.1 67 14-86 291-371 (379)
77 PRK02610 histidinol-phosphate 52.8 71 0.0015 26.7 7.3 55 13-85 315-369 (374)
78 PLN02955 8-amino-7-oxononanoat 52.6 58 0.0012 29.5 6.9 69 11-86 392-460 (476)
79 PRK08056 threonine-phosphate d 52.5 86 0.0019 26.0 7.7 63 11-86 292-354 (356)
80 PRK02948 cysteine desulfurase; 51.8 55 0.0012 27.2 6.4 60 22-85 299-372 (381)
81 PRK06207 aspartate aminotransf 51.5 80 0.0017 26.9 7.4 63 13-85 336-400 (405)
82 PRK09295 bifunctional cysteine 51.3 41 0.00089 28.4 5.6 78 2-85 322-402 (406)
83 COG1168 MalY Bifunctional PLP- 50.7 26 0.00057 31.0 4.3 62 12-78 319-381 (388)
84 PRK05839 hypothetical protein; 49.4 92 0.002 26.1 7.4 63 13-85 310-372 (374)
85 CHL00137 rps13 ribosomal prote 49.1 83 0.0018 23.2 6.2 48 14-83 14-62 (122)
86 cd06453 SufS_like Cysteine des 49.0 35 0.00075 28.2 4.7 73 2-80 296-372 (373)
87 cd06450 DOPA_deC_like DOPA dec 48.9 45 0.00097 27.1 5.3 72 2-83 269-344 (345)
88 PRK08175 aminotransferase; Val 48.7 1.2E+02 0.0025 25.6 7.9 64 13-85 321-387 (395)
89 PRK08636 aspartate aminotransf 48.3 1.1E+02 0.0024 25.9 7.8 63 14-86 333-399 (403)
90 PRK06348 aspartate aminotransf 48.3 94 0.002 26.1 7.3 59 13-81 319-379 (384)
91 PRK05937 8-amino-7-oxononanoat 48.1 46 0.001 27.9 5.4 54 23-86 296-349 (370)
92 TIGR00858 bioF 8-amino-7-oxono 47.1 63 0.0014 26.1 5.9 64 11-81 296-359 (360)
93 COG0718 Uncharacterized protei 47.0 60 0.0013 23.6 5.1 41 71-135 64-104 (105)
94 PRK07682 hypothetical protein; 46.6 1.2E+02 0.0026 25.2 7.6 64 13-85 310-374 (378)
95 PRK02936 argD acetylornithine 44.8 82 0.0018 26.2 6.4 58 12-85 320-377 (377)
96 PTZ00125 ornithine aminotransf 44.4 1.2E+02 0.0026 25.4 7.3 60 14-86 334-394 (400)
97 COG1167 ARO8 Transcriptional r 44.3 1.5E+02 0.0032 26.2 8.1 66 14-85 388-453 (459)
98 PRK04781 histidinol-phosphate 44.3 1.3E+02 0.0028 25.2 7.5 57 12-84 304-360 (364)
99 PRK05764 aspartate aminotransf 43.9 1.7E+02 0.0036 24.4 8.1 73 2-86 313-390 (393)
100 TIGR01366 serC_3 phosphoserine 43.7 1E+02 0.0022 26.0 6.9 60 17-86 300-359 (361)
101 PF01276 OKR_DC_1: Orn/Lys/Arg 43.7 22 0.00048 31.5 2.9 24 20-43 377-400 (417)
102 PRK05166 histidinol-phosphate 42.3 2E+02 0.0043 24.0 8.3 57 13-84 312-368 (371)
103 TIGR03542 DAPAT_plant LL-diami 42.2 1.3E+02 0.0029 25.4 7.4 66 8-84 334-401 (402)
104 PRK05664 threonine-phosphate d 42.0 1.2E+02 0.0026 25.0 6.8 46 25-84 280-325 (330)
105 PRK08960 hypothetical protein; 41.8 1.5E+02 0.0032 24.8 7.5 65 12-84 319-384 (387)
106 PRK04260 acetylornithine amino 41.5 95 0.0021 25.9 6.3 57 12-84 318-374 (375)
107 PRK03317 histidinol-phosphate 41.3 1.8E+02 0.0039 24.1 7.9 56 11-85 306-362 (368)
108 PLN02397 aspartate transaminas 41.3 67 0.0015 27.7 5.5 44 25-86 377-420 (423)
109 PLN02855 Bifunctional selenocy 41.0 52 0.0011 28.0 4.7 79 2-86 330-417 (424)
110 PRK07337 aminotransferase; Val 41.0 1.8E+02 0.0038 24.3 7.8 67 10-84 315-386 (388)
111 PRK06939 2-amino-3-ketobutyrat 40.8 1.3E+02 0.0029 24.8 7.0 69 11-86 324-392 (397)
112 TIGR00707 argD acetylornithine 40.4 1E+02 0.0022 25.4 6.3 56 13-84 323-378 (379)
113 PRK14624 hypothetical protein; 40.2 76 0.0016 23.3 4.8 43 70-135 64-106 (115)
114 PRK06855 aminotransferase; Val 40.0 1.6E+02 0.0034 25.5 7.5 51 27-86 378-428 (433)
115 PRK07865 N-succinyldiaminopime 39.9 1.2E+02 0.0027 25.1 6.7 56 14-81 307-362 (364)
116 PRK05957 aspartate aminotransf 39.7 1.4E+02 0.003 25.1 7.1 63 13-85 319-383 (389)
117 PLN02376 1-aminocyclopropane-1 39.3 1.4E+02 0.003 26.7 7.3 64 14-86 366-437 (496)
118 PRK13237 tyrosine phenol-lyase 39.2 1.4E+02 0.003 27.0 7.2 84 1-88 335-434 (460)
119 PRK07590 L,L-diaminopimelate a 39.2 1.6E+02 0.0034 25.0 7.3 65 9-84 342-408 (409)
120 PF06306 CgtA: Beta-1,4-N-acet 38.7 48 0.001 28.9 4.0 27 50-87 85-112 (347)
121 PRK04635 histidinol-phosphate 38.4 1.7E+02 0.0037 24.2 7.3 53 13-81 297-349 (354)
122 PRK15029 arginine decarboxylas 38.3 67 0.0015 30.8 5.3 55 15-82 536-599 (755)
123 COG1890 RPS1A Ribosomal protei 37.9 84 0.0018 25.7 5.1 65 55-132 116-181 (214)
124 PRK06836 aspartate aminotransf 37.4 1.6E+02 0.0034 24.9 7.0 62 12-86 329-390 (394)
125 PF12307 DUF3631: Protein of u 37.3 40 0.00088 26.8 3.2 45 16-76 134-179 (184)
126 PRK14809 histidinol-phosphate 36.9 1.8E+02 0.0038 24.0 7.1 57 13-85 299-355 (357)
127 COG4273 Uncharacterized conser 36.8 1.3E+02 0.0029 22.8 5.7 55 23-87 75-129 (135)
128 KOG0452 RNA-binding translatio 36.6 16 0.00035 34.4 0.9 31 8-38 205-238 (892)
129 COG4566 TtrR Response regulato 36.5 1.1E+02 0.0024 24.8 5.5 36 13-48 50-85 (202)
130 PRK00854 rocD ornithine--oxo-a 35.8 1.5E+02 0.0033 24.9 6.6 62 11-85 338-399 (401)
131 TIGR03588 PseC UDP-4-keto-6-de 35.4 2E+02 0.0043 24.1 7.3 69 12-84 294-379 (380)
132 PRK05289 UDP-N-acetylglucosami 35.3 96 0.0021 25.2 5.2 28 59-86 194-221 (262)
133 PRK06718 precorrin-2 dehydroge 35.3 1.4E+02 0.003 23.4 6.0 73 11-85 70-144 (202)
134 cd07382 MPP_DR1281 Deinococcus 35.0 69 0.0015 26.4 4.3 58 1-69 57-119 (255)
135 PF00941 FAD_binding_5: FAD bi 34.8 59 0.0013 24.7 3.7 45 2-69 23-77 (171)
136 PF13844 Glyco_transf_41: Glyc 34.8 69 0.0015 29.0 4.6 19 114-132 432-450 (468)
137 TIGR01470 cysG_Nterm siroheme 34.3 1.7E+02 0.0037 23.0 6.3 59 27-85 84-144 (205)
138 COG0156 BioF 7-keto-8-aminopel 34.2 1.4E+02 0.003 26.3 6.3 70 8-84 318-387 (388)
139 KOG1034 Transcriptional repres 34.2 58 0.0012 28.7 3.8 43 1-48 192-235 (385)
140 cd00613 GDC-P Glycine cleavage 33.2 78 0.0017 26.3 4.5 62 9-80 335-397 (398)
141 PF02192 PI3K_p85B: PI3-kinase 33.0 54 0.0012 22.4 2.9 22 114-135 10-31 (78)
142 TIGR03631 bact_S13 30S ribosom 33.0 1.8E+02 0.0039 21.1 5.8 51 11-83 9-60 (113)
143 PRK06959 putative threonine-ph 33.0 2.6E+02 0.0057 23.1 7.6 55 14-86 278-332 (339)
144 TIGR02618 tyr_phenol_ly tyrosi 33.0 1.9E+02 0.0041 26.1 7.0 84 1-88 328-427 (450)
145 PRK07309 aromatic amino acid a 32.8 2.8E+02 0.006 23.3 7.8 61 15-85 323-386 (391)
146 PRK05179 rpsM 30S ribosomal pr 32.7 2E+02 0.0044 21.1 6.2 48 14-83 14-62 (122)
147 PRK05562 precorrin-2 dehydroge 32.0 2.3E+02 0.0049 23.0 6.8 60 26-85 99-160 (223)
148 PRK09257 aromatic amino acid a 31.7 97 0.0021 26.1 4.8 44 24-85 353-396 (396)
149 PRK09265 aminotransferase AlaT 31.3 2.5E+02 0.0054 23.7 7.3 64 12-85 331-399 (404)
150 PRK07681 aspartate aminotransf 30.6 2.5E+02 0.0054 23.6 7.2 61 12-83 322-384 (399)
151 PRK15400 lysine decarboxylase 30.4 1.3E+02 0.0029 28.7 5.8 47 22-81 507-553 (714)
152 PRK01688 histidinol-phosphate 29.6 2.3E+02 0.005 23.5 6.7 56 10-80 294-349 (351)
153 PRK03244 argD acetylornithine 29.3 2.2E+02 0.0047 23.9 6.6 60 12-86 334-393 (398)
154 PRK07550 hypothetical protein; 29.2 2.6E+02 0.0057 23.3 7.1 63 12-82 319-382 (386)
155 PRK08912 hypothetical protein; 29.1 2.7E+02 0.0058 23.2 7.1 67 12-85 315-384 (387)
156 PRK15399 lysine decarboxylase 28.9 1.5E+02 0.0032 28.4 5.8 48 21-81 506-553 (713)
157 PRK08637 hypothetical protein; 28.8 1.4E+02 0.003 25.1 5.3 56 14-85 328-384 (388)
158 COG0099 RpsM Ribosomal protein 28.7 1.1E+02 0.0025 22.8 4.1 49 15-85 15-64 (121)
159 PRK04073 rocD ornithine--oxo-a 28.2 2.6E+02 0.0056 23.6 6.9 57 13-85 339-395 (396)
160 COG0520 csdA Selenocysteine ly 27.9 1.8E+02 0.0039 25.4 6.0 68 12-85 333-403 (405)
161 PRK01533 histidinol-phosphate 27.8 2.9E+02 0.0062 23.2 7.0 55 11-86 300-354 (366)
162 COG2008 GLY1 Threonine aldolas 27.7 1E+02 0.0022 26.9 4.3 68 2-84 273-340 (342)
163 TIGR00103 DNA_YbaB_EbfC DNA-bi 27.7 1.4E+02 0.003 21.2 4.4 17 72-88 64-80 (102)
164 TIGR01788 Glu-decarb-GAD gluta 27.7 1.9E+02 0.0041 25.5 6.1 66 2-69 347-415 (431)
165 PF08085 Entericidin: Enterici 27.5 45 0.00098 17.5 1.3 18 65-83 2-19 (21)
166 TIGR03537 DapC succinyldiamino 27.5 2.5E+02 0.0055 23.1 6.6 59 12-80 288-346 (350)
167 PRK06425 histidinol-phosphate 27.2 3.5E+02 0.0076 22.1 7.9 59 13-85 273-331 (332)
168 cd00610 OAT_like Acetyl ornith 27.0 2E+02 0.0043 23.9 5.9 60 12-84 346-412 (413)
169 PRK14628 hypothetical protein; 26.3 1.8E+02 0.0039 21.4 4.9 39 73-134 78-116 (118)
170 PRK10605 N-ethylmaleimide redu 26.3 1E+02 0.0023 26.4 4.2 27 65-91 145-171 (362)
171 PLN02607 1-aminocyclopropane-1 26.2 2.5E+02 0.0055 24.6 6.6 65 13-86 365-436 (447)
172 TIGR03576 pyridox_MJ0158 pyrid 25.8 2.2E+02 0.0048 24.0 6.0 59 14-82 282-342 (346)
173 PRK09147 succinyldiaminopimela 25.7 3.7E+02 0.0081 22.5 7.4 64 13-85 327-394 (396)
174 PF08236 SRI: SRI (Set2 Rpb1 i 25.6 1.5E+02 0.0033 20.3 4.2 18 69-86 28-45 (88)
175 PLN02483 serine palmitoyltrans 25.5 3.1E+02 0.0067 24.4 7.1 77 2-86 389-465 (489)
176 PRK02627 acetylornithine amino 25.3 3.3E+02 0.0072 22.5 7.0 58 13-86 336-393 (396)
177 PRK11706 TDP-4-oxo-6-deoxy-D-g 24.9 2.7E+02 0.0058 23.4 6.4 73 11-84 288-373 (375)
178 PRK09276 LL-diaminopimelate am 24.9 3.6E+02 0.0078 22.4 7.1 45 12-61 322-368 (385)
179 PRK04053 rps13p 30S ribosomal 24.6 1.5E+02 0.0033 22.7 4.3 48 14-83 22-70 (149)
180 PRK08363 alanine aminotransfer 24.5 3.9E+02 0.0085 22.4 7.3 64 12-85 326-392 (398)
181 PF04343 DUF488: Protein of un 24.5 1E+02 0.0022 21.9 3.2 26 14-39 15-46 (122)
182 PRK11658 UDP-4-amino-4-deoxy-L 24.4 1.5E+02 0.0032 25.1 4.7 73 13-85 291-377 (379)
183 COG1831 Predicted metal-depend 23.7 2.9E+02 0.0062 23.6 6.1 59 10-88 8-70 (285)
184 PF00400 WD40: WD domain, G-be 23.7 62 0.0013 17.4 1.6 17 2-18 23-39 (39)
185 PF00690 Cation_ATPase_N: Cati 23.6 95 0.0021 19.7 2.7 25 21-49 18-42 (69)
186 PRK14626 hypothetical protein; 23.6 2.7E+02 0.0059 20.1 5.3 19 70-88 63-81 (110)
187 PRK14623 hypothetical protein; 23.3 2.3E+02 0.005 20.5 4.9 41 73-136 60-102 (106)
188 COG1902 NemA NADH:flavin oxido 23.3 1.5E+02 0.0032 25.8 4.5 49 43-91 112-161 (363)
189 PRK04335 cell division protein 23.3 4.8E+02 0.01 22.5 7.5 33 13-45 176-211 (313)
190 PF14258 DUF4350: Domain of un 23.2 1.8E+02 0.0038 18.4 3.9 54 26-83 7-62 (70)
191 TIGR00496 frr ribosome recycli 23.1 3.7E+02 0.0079 20.9 9.5 48 10-66 51-98 (176)
192 PRK09082 methionine aminotrans 23.0 3.4E+02 0.0073 22.7 6.6 50 12-62 319-370 (386)
193 PRK10949 protease 4; Provision 23.0 1.9E+02 0.0041 27.0 5.4 51 23-87 183-238 (618)
194 PLN02450 1-aminocyclopropane-1 23.0 2.6E+02 0.0056 24.6 6.1 63 14-86 359-429 (468)
195 PF12725 DUF3810: Protein of u 22.6 4.1E+02 0.0089 22.5 7.0 71 64-141 90-161 (318)
196 TIGR03540 DapC_direct LL-diami 22.3 4.5E+02 0.0098 21.8 7.7 47 12-62 320-367 (383)
197 PRK06423 phosphoribosylformylg 22.3 2.2E+02 0.0048 18.6 4.3 51 13-79 3-57 (73)
198 PRK07505 hypothetical protein; 22.0 2.8E+02 0.0061 23.4 6.0 55 26-86 344-398 (402)
199 KOG3914 WD repeat protein WDR4 21.0 75 0.0016 28.2 2.3 20 2-21 205-224 (390)
200 smart00320 WD40 WD40 repeats. 20.8 65 0.0014 15.2 1.2 13 5-17 27-39 (40)
201 PF00266 Aminotran_5: Aminotra 20.3 3.2E+02 0.0068 22.6 5.8 60 10-76 307-370 (371)
No 1
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-42 Score=294.05 Aligned_cols=136 Identities=62% Similarity=0.957 Sum_probs=128.5
Q ss_pred CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
+||+++|||||||||||||++.|++|..+|++||.|+|.+|||++|+|.+++.||||||||||||+|||.|+||++|+++
T Consensus 340 ~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~f 419 (477)
T KOG2467|consen 340 RGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADF 419 (477)
T ss_pred cCceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcccchhhhHHhhhcccc-cHHHHHHHHHHHHHHHhhCCCCCCc
Q 032257 81 FDAAVKLTVKIKSETQGTKLKDFVATTQSAN-FQSEIAKRCHDVEEYAKQFPTIGFE 136 (144)
Q Consensus 81 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ir~~V~~l~~~fPi~~~~ 136 (144)
|+++++++.+++.+.++++++||++.+.+++ ..+++.++|++|++|+.+||+|+++
T Consensus 420 i~~av~i~~~~~~~~~~~~lkdf~~~~~~~~~~~~~v~~Lr~~Ve~fa~~fp~pg~~ 476 (477)
T KOG2467|consen 420 IDRAVKIALEIQKEAGGKKLKDFKKFLSENKVMSEEVAELRKRVEEFAGQFPMPGFE 476 (477)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999998766699999999887654 3357899999999999999999975
No 2
>PLN02271 serine hydroxymethyltransferase
Probab=100.00 E-value=7.3e-39 Score=285.68 Aligned_cols=132 Identities=40% Similarity=0.682 Sum_probs=121.7
Q ss_pred CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
+||+|++|||||||||||++++|++|..++++|++|||++|||.||+|.+++.||||||||+|||+|||+|+||++||+|
T Consensus 454 ~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~ 533 (586)
T PLN02271 454 RKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADF 533 (586)
T ss_pred CCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCCCc
Q 032257 81 FDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFE 136 (144)
Q Consensus 81 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~~~ 136 (144)
|.+++.++++++.+ .++++++|++...++ +.++++|++|.+||++||+|++|
T Consensus 534 i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~i~~l~~~V~~~~~~fp~p~~~ 585 (586)
T PLN02271 534 LLRAAQIASAVQRE-HGKLQKEFLKGLQNN---KDIVELRNRVEAFASQFAMPGFD 585 (586)
T ss_pred HHHHHhhhhhhhhh-cchhhhhhhhccCCH---HHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999988777765 356788887666543 57889999999999999999875
No 3
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-38 Score=271.75 Aligned_cols=110 Identities=41% Similarity=0.686 Sum_probs=103.0
Q ss_pred CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHH
Q 032257 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAY 79 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~ 79 (144)
+||+|++|||||||||||+++.|++|+.+++.|+++||++|||.||||+ +|++||||||||||+|||||+|+||++||+
T Consensus 303 ~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~ 382 (413)
T COG0112 303 RGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIAD 382 (413)
T ss_pred cCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHH
Confidence 6999999999999999999988999999999999999999999999997 899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCC
Q 032257 80 FFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIG 134 (144)
Q Consensus 80 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~ 134 (144)
||.++|... .+.++++|++|.+||++||+|.
T Consensus 383 ~I~~vl~~~------------------------~~~~~~vk~~V~~l~~~fp~y~ 413 (413)
T COG0112 383 LIADVLDGL------------------------KDVPAEVKEEVAELCRRFPLYK 413 (413)
T ss_pred HHHHHHhcc------------------------chhHHHHHHHHHHHHHhCCCCC
Confidence 999999631 1346789999999999999984
No 4
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.98 E-value=7.1e-32 Score=236.69 Aligned_cols=143 Identities=57% Similarity=0.946 Sum_probs=126.7
Q ss_pred CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
+||+++++|||||+++||+++.|++|.++++.|+++||.+|+|.+|+|.+++.||||||||+++|+|||+++||++||++
T Consensus 333 ~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~ 412 (475)
T PLN03226 333 KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEF 412 (475)
T ss_pred CCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCCCcccccccCC
Q 032257 81 FDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETMKYKS 144 (144)
Q Consensus 81 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~~~~~~~~~~~ 144 (144)
|.++|..+...+++ .++++++|......+...+.++++|++|.+||++||+|+++..+|||++
T Consensus 413 i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~~~~~~~~~~ 475 (475)
T PLN03226 413 LHRAVTIALKIQKE-HGKKLKDFKKGLESNDFSKDIEALRAEVEEFATSFPMPGFDKESMKYKE 475 (475)
T ss_pred HHHHHHHhhhhhhh-cccchhhhhhhccccccHHHHHHHHHHHHHHHHhCCCCCCCccccccCC
Confidence 99999987666555 3567777754432221135688999999999999999999999999985
No 5
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.96 E-value=2.5e-29 Score=217.23 Aligned_cols=81 Identities=54% Similarity=0.918 Sum_probs=70.7
Q ss_pred CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
+||+|++|||||||||||++++|++|.+++++|+++||++|+|.+|+|.+++.+|||||||+++|+|||+|+||++||+|
T Consensus 319 ~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 319 RGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL 398 (399)
T ss_dssp TT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred CCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H
Q 032257 81 F 81 (144)
Q Consensus 81 i 81 (144)
|
T Consensus 399 I 399 (399)
T PF00464_consen 399 I 399 (399)
T ss_dssp H
T ss_pred C
Confidence 7
No 6
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.92 E-value=4.2e-25 Score=195.15 Aligned_cols=130 Identities=31% Similarity=0.485 Sum_probs=107.4
Q ss_pred CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHH
Q 032257 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAY 79 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~ 79 (144)
+||++++||||||+|+||+.+.+++|..+++.|+++||.||+|++|+++ +++.+||||||++++|+||++++||+++++
T Consensus 358 ~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad 437 (493)
T PRK13580 358 RGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAE 437 (493)
T ss_pred cCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHH
Confidence 5999999999999999999998889999999999999999999999997 778999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCC-CCc
Q 032257 80 FFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTI-GFE 136 (144)
Q Consensus 80 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~-~~~ 136 (144)
+|.+++......+.. .+.++++ +...+ .+.++++|++|.+||.+||+| +++
T Consensus 438 ~l~~~l~~~~~~~~~-~~~~~~~--~~~~~---~~~~~~~~~~v~~~~~~~p~~~~~~ 489 (493)
T PRK13580 438 LIVKVLSNTTPGTTA-EGAPSKA--KYELD---EGVAQEVRARVAELLARFPLYPEID 489 (493)
T ss_pred HHHHHHHhhhhcccc-ccccccc--cccCC---HHHHHHHHHHHHHHHHhCCCCCccC
Confidence 999999643222111 1233333 11111 256789999999999999995 443
No 7
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.83 E-value=8.9e-20 Score=158.14 Aligned_cols=131 Identities=53% Similarity=0.857 Sum_probs=110.4
Q ss_pred CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
.|+++++++|++|++++++...++++..+...|+++||.++++.+|+++.+..+++||+|+..+|+|||+++||++++++
T Consensus 322 ~g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~ 401 (452)
T PTZ00094 322 RGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADF 401 (452)
T ss_pred CCcEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHH
Confidence 38899988889999999998889999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCCC
Q 032257 81 FDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 135 (144)
Q Consensus 81 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~~ 135 (144)
|.+++.......++. +++..+|.+...+ ...++++|++|.+||.+||+|+.
T Consensus 402 l~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~ 452 (452)
T PTZ00094 402 LDRAVKLAQEIQKQV-GKKLVDFKKALEK---NPELQKLRQEVVEFASQFPFPGI 452 (452)
T ss_pred HHHHHHHHhhhhhhc-ccchhhhhhhccc---HHHHHHHHHHHHHHHHhCCCCCC
Confidence 999998765554332 3333344332222 25688999999999999999973
No 8
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.72 E-value=8.2e-17 Score=138.64 Aligned_cols=111 Identities=43% Similarity=0.720 Sum_probs=98.2
Q ss_pred CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHH
Q 032257 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAY 79 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~ 79 (144)
.||+++.++||+|+++|++...+.++..+.+.|+++||.++.+.+|+|. .|..+++||+|+.++|+||++++|++++++
T Consensus 305 ~G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~ 384 (416)
T PRK13034 305 RGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIAN 384 (416)
T ss_pred cCCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHH
Confidence 3788886679999999999888889999999999999999999999984 778899999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCC
Q 032257 80 FFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTI 133 (144)
Q Consensus 80 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~ 133 (144)
.|.+++.. .+ + .+.++.||++|.+|+++||+|
T Consensus 385 ~l~~~~~~---~~-----------------~--~~~~~~~~~~~~~~~~~~~~~ 416 (416)
T PRK13034 385 WILDVLDD---LG-----------------N--AALEQRVRKEVKALCSRFPIY 416 (416)
T ss_pred HHHHHHhc---CC-----------------C--HHHHHHHHHHHHHHHHhCCCC
Confidence 99999852 10 0 244688999999999999986
No 9
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.37 E-value=9.4e-12 Score=105.69 Aligned_cols=112 Identities=42% Similarity=0.733 Sum_probs=93.1
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
|+++..+++++|++++++.+.+++...+.+.|.+.||.++....|... ++..+.++|||+.++|++|++++|+..+++.
T Consensus 303 g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~ 382 (416)
T PRK00011 303 GFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAEL 382 (416)
T ss_pred CCeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHH
Confidence 677766678899999998776778889999999999999987778764 5666789999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCCC
Q 032257 81 FDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 135 (144)
Q Consensus 81 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~~ 135 (144)
|.+++..- . + ...+++||.+|.+|+++||.|.|
T Consensus 383 l~~~~~~~---~----------------~---~~~~~~~~~~~~~~~~~~~~~~~ 415 (416)
T PRK00011 383 IADVLDNP---D----------------D---EAVIEEVKEEVKELCKRFPLYKY 415 (416)
T ss_pred HHHHHhcc---C----------------c---chhHHHHHHHHHHHHHhCCCCCC
Confidence 98877420 0 0 13568899999999999997654
No 10
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.98 E-value=5.5e-09 Score=87.98 Aligned_cols=85 Identities=54% Similarity=0.889 Sum_probs=73.4
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCC-CCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~-~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
|+.++.....+|++|+++.+.+.++..+.+.|++.||.++....|+... +..+.+||||+..+|++|++++||+++++.
T Consensus 299 g~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~ 378 (402)
T cd00378 299 GFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADF 378 (402)
T ss_pred CCeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHH
Confidence 6777655567999999998777788999999999999999877888753 445679999999999999999999999999
Q ss_pred HHHHHH
Q 032257 81 FDAAVK 86 (144)
Q Consensus 81 i~~~l~ 86 (144)
|.+++.
T Consensus 379 l~~~~~ 384 (402)
T cd00378 379 IARALK 384 (402)
T ss_pred HHHHHh
Confidence 999885
No 11
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=97.83 E-value=6.8e-05 Score=65.85 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=61.8
Q ss_pred CCeeeeCCCccceeeEeccCCC-------CCHHH-HHHHHhhcCceeecccC---CCCCCC-----CCCCceeecchhhh
Q 032257 2 GYELVSGGTENHLVLVNLKNKG-------IDGSR-VEKVLEAVHIAANKNTV---PGDVSA-----MVPGGIRMGTPALT 65 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~g-------i~g~~-~~~~Le~~gI~vnkn~l---P~d~~~-----~~~sgiRlGT~a~T 65 (144)
|++++. -+-.|.+++|+..+. .++.. +.++|+++||.+..... |.|+.. ....++||++|
T Consensus 311 G~~v~~-P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~p--- 386 (431)
T cd00617 311 GVPIVE-PAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIP--- 386 (431)
T ss_pred CCCccC-CCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEecc---
Confidence 677775 233499999987541 23444 55899999999876433 666521 13579999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhh
Q 032257 66 SRGFVEEDFAKVAYFFDAAVKLT 88 (144)
Q Consensus 66 tRG~~e~dm~~ia~~i~~~l~~~ 88 (144)
+|+++.++|+.||+.|.++++..
T Consensus 387 rr~~t~~~~~~~~~~~~~~~~~~ 409 (431)
T cd00617 387 RRVYTQDHMDYVAAAVIALYERR 409 (431)
T ss_pred ccccCHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999988653
No 12
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=97.58 E-value=0.00032 Score=61.87 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCCeeee--CCCccceeeEeccCC-------CC-CHHHHHHHHhhcCceeeccc---CCCCCCC-----CCCCceeecch
Q 032257 1 MGYELVS--GGTENHLVLVNLKNK-------GI-DGSRVEKVLEAVHIAANKNT---VPGDVSA-----MVPGGIRMGTP 62 (144)
Q Consensus 1 ~G~~vv~--ggTd~Hlvlvdl~~~-------gi-~g~~~~~~Le~~gI~vnkn~---lP~d~~~-----~~~sgiRlGT~ 62 (144)
.|++++. || |.+++|++.. +. +..-+..+|+++||.+.... .|.|+.. .....+||+.+
T Consensus 335 ~G~~~~~p~Gg---~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~ 411 (460)
T PRK13238 335 AGVPIQTPAGG---HAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIP 411 (460)
T ss_pred CCCCeEccCCc---eEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecc
Confidence 4788884 44 9999999764 22 46688899999999998755 6665421 23579999999
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 63 ALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 63 a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
+|+++.++|+.+|+.|..+.+
T Consensus 412 ---rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 412 ---RRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred ---cccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988664
No 13
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=89.74 E-value=0.85 Score=38.39 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=51.5
Q ss_pred CCeeeeCCC---ccceeeEeccCCCCCHHHHHHHHhhcCceeeccc---CCCCCCCCCCCceeecchhhhhcCCCHHHHH
Q 032257 2 GYELVSGGT---ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNT---VPGDVSAMVPGGIRMGTPALTSRGFVEEDFA 75 (144)
Q Consensus 2 G~~vv~ggT---d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~---lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~ 75 (144)
|++++.... ..+++.+.+. ++++.++.+.|.+.||.+..-. -|.-.....++.|||+....| +++|++
T Consensus 316 g~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~----t~~di~ 389 (403)
T TIGR01979 316 GLRIYGPRDAEDRGGIISFNVE--GVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYN----TEEDID 389 (403)
T ss_pred CEEEeCCCCccccCceEEEEeC--CcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCC----CHHHHH
Confidence 455654221 2678888764 4678899999999999997421 110000012367999877665 568999
Q ss_pred HHHHHHHHHHH
Q 032257 76 KVAYFFDAAVK 86 (144)
Q Consensus 76 ~ia~~i~~~l~ 86 (144)
.+.+.|.+++.
T Consensus 390 ~l~~~l~~~~~ 400 (403)
T TIGR01979 390 ALVEALKKVRK 400 (403)
T ss_pred HHHHHHHHHHH
Confidence 99988876553
No 14
>PRK06225 aspartate aminotransferase; Provisional
Probab=88.95 E-value=3.3 Score=34.75 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=49.2
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
...-++++++...+++..++.+.|.+.||.+-... +......++.+||+.. ..++||.+..+.|.+++.
T Consensus 307 ~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~--~~~~~~~~~~iR~s~~------~~~e~l~~~~~~l~~~~~ 375 (380)
T PRK06225 307 SHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGT--YTSKRFGDRYIRVSFS------IPREQVEVFCEEFPDVVE 375 (380)
T ss_pred CCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCc--ccCcCCCCceEEEEeC------CCHHHHHHHHHHHHHHHH
Confidence 34457889987767889999999999999875421 1112223467999842 367999999988877774
No 15
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=88.51 E-value=1.7 Score=35.43 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=52.8
Q ss_pred CCeeeeCC----CccceeeEeccCC-CCCHHHHHHHHhhcCceeecccCCCCCCC-C----------CC-------Ccee
Q 032257 2 GYELVSGG----TENHLVLVNLKNK-GIDGSRVEKVLEAVHIAANKNTVPGDVSA-M----------VP-------GGIR 58 (144)
Q Consensus 2 G~~vv~gg----Td~Hlvlvdl~~~-gi~g~~~~~~Le~~gI~vnkn~lP~d~~~-~----------~~-------sgiR 58 (144)
|++++... ...+++.+.+... +.+..++.+.|.+.||.+.....|....+ . .| +.||
T Consensus 253 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 332 (352)
T cd00616 253 GIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLS 332 (352)
T ss_pred CccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEE
Confidence 45555432 2457777877542 67899999999999999987776654311 1 12 5788
Q ss_pred ecchhhhhcCCCHHHHHHHHHHH
Q 032257 59 MGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 59 lGT~a~TtRG~~e~dm~~ia~~i 81 (144)
|... -.++++||+.|++.|
T Consensus 333 l~~~----~~~t~~di~~i~~~l 351 (352)
T cd00616 333 LPLH----PSLTEEEIDRVIEAL 351 (352)
T ss_pred ccCC----CCCCHHHHHHHHHHh
Confidence 8854 477899999998865
No 16
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=86.37 E-value=4.5 Score=33.41 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=43.8
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
....+|+++ .+++..++.+.|.+.||.+..... + ....+..|||+.. .++|++++.+.+.+++
T Consensus 298 ~~~~i~~~~--~~~~~~~~~~~l~~~gv~v~~~~~-f--~~~~~~~lRis~~-------~~~~~~~l~~~L~~il 360 (361)
T PRK00950 298 EANFVLVDV--TPMTAKEFCEELLKRGVIVRDCTS-F--RGLGDYYIRVSIG-------TFEENERFLEILKEIV 360 (361)
T ss_pred cceEEEEEC--CCCCHHHHHHHHHHCCEEEeeCCc-c--CCCCCCeEEEECC-------CHHHHHHHHHHHHHHh
Confidence 345788888 356888888898889998874221 1 1122457999965 5678888888877654
No 17
>PLN02721 threonine aldolase
Probab=85.41 E-value=6.6 Score=32.02 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=48.2
Q ss_pred CCCccceeeEeccC-CCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 8 GGTENHLVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 8 ggTd~Hlvlvdl~~-~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.....+++++++.. .+.+...+.+.|.+.||.+.. + .+..|||... -..+++||+++.+.+.+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~----~-----~~~~lR~~~~----~~~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 285 AAVETNIVYFDITDGSRITAEKLCKSLEEHGVLLMP----G-----NSSRIRVVTH----HQISDSDVQYTLSCFQQAA 350 (353)
T ss_pred CCccceEEEEEccCCccccHHHHHHHHHhCCcEEec----C-----CCceEEEEec----CcCCHHHHHHHHHHHHHHh
Confidence 34556788888754 235788899999999999873 2 2357999853 2457899999999887766
No 18
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=84.78 E-value=6.4 Score=32.34 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=47.7
Q ss_pred CCeeeeC-CC-ccceeeEeccCCCCCHHHHHHHHhhc-CceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHH
Q 032257 2 GYELVSG-GT-ENHLVLVNLKNKGIDGSRVEKVLEAV-HIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (144)
Q Consensus 2 G~~vv~g-gT-d~Hlvlvdl~~~gi~g~~~~~~Le~~-gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia 78 (144)
|+++.+. .. -.+++++.+ +.++++..+.+.|.+. ||.+..-. . +..+..|||+.... .+++|++++.
T Consensus 279 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~gI~~~~g~----~-~~~~~~iRis~~~~----~~~e~v~~~~ 348 (356)
T cd06451 279 GLKLLAKPELRSPTVTAVLV-PEGVDGDEVVRRLMKRYNIEIAGGL----G-PTAGKVFRIGHMGE----ATREDVLGVL 348 (356)
T ss_pred CCeeccCcccCCCceEEEEC-CCCCCHHHHHHHHHHhCCEEEeccc----c-cccCCEEEEecCCC----CCHHHHHHHH
Confidence 5666542 11 123334544 3467888999898887 99986421 1 12335799997665 5578999998
Q ss_pred HHHHHHH
Q 032257 79 YFFDAAV 85 (144)
Q Consensus 79 ~~i~~~l 85 (144)
+.+.+++
T Consensus 349 ~~l~~~~ 355 (356)
T cd06451 349 SALEEAL 355 (356)
T ss_pred HHHHHHh
Confidence 8887765
No 19
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=84.51 E-value=5.3 Score=32.89 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=47.2
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
|++++. ....+++.+++. ++.++.+.|.+.||.+.... .++.|||+.... .+++|+..+.+.+
T Consensus 303 g~~~~~-~~~~~~v~~~~~----~~~~v~~~L~~~gi~v~~~~--------~~~~iRis~~~~----~t~edi~~~~~~l 365 (371)
T PRK13520 303 GFEPVI-EPVLNIVAFDDP----NPDEVREKLRERGWRVSVTR--------CPEALRIVCMPH----VTREHIENFLEDL 365 (371)
T ss_pred CCEEec-CCCceEEEEecC----CHHHHHHHHHHCCceeccCC--------CCCEEEEEEECC----CCHHHHHHHHHHH
Confidence 565332 235678888764 57888888988899987521 135799997664 4679999988887
Q ss_pred HHHH
Q 032257 82 DAAV 85 (144)
Q Consensus 82 ~~~l 85 (144)
..++
T Consensus 366 ~~~~ 369 (371)
T PRK13520 366 KEVK 369 (371)
T ss_pred HHHh
Confidence 6654
No 20
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=83.27 E-value=8.2 Score=31.97 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=44.0
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
...++|+++ +.+.+..++.+.|.+.||.+....-++ .+..|||+.. ..+|++.+.+.+.+++
T Consensus 303 ~g~~~~i~~-~~~~~~~~~~~~L~~~gI~v~~~~~~~-----~~~~iRis~~-------~~~e~~~l~~aL~~~~ 364 (367)
T PRK02731 303 VGNFILVDF-DDGKDAAEAYQALLKRGVIVRPVAGYG-----LPNALRITIG-------TEEENRRFLAALKEFL 364 (367)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHCCEEEEeCCCCC-----CCCeEEEecC-------CHHHHHHHHHHHHHHH
Confidence 457889987 345678888899999999987532111 2357999963 4678888887776655
No 21
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=81.43 E-value=1.9 Score=36.80 Aligned_cols=63 Identities=25% Similarity=0.299 Sum_probs=43.9
Q ss_pred CCCeeee--CCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhh
Q 032257 1 MGYELVS--GGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPAL 64 (144)
Q Consensus 1 ~G~~vv~--ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~ 64 (144)
||-.|++ --.|--||++|.+.....-...|+-||++||++|| .-|+=. .....+||.+++...
T Consensus 129 RGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk-~~Pniy~k~kk~gGi~f~~T~~ 194 (364)
T KOG1486|consen 129 RGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNK-RKPNIYFKKKKTGGISFNTTVP 194 (364)
T ss_pred CCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccC-CCCCeEEEeeccCCeEEeeeec
Confidence 3455555 44566678888776665566889999999999998 445443 444568999986443
No 22
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=79.19 E-value=15 Score=30.16 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=44.5
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
|+++.- ...+.+++++. +.+..++.+.|.+.||.+.. +..+ .....+||+.. .+++++++.+.|
T Consensus 284 g~~~~~--~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~----~~~~-~~~~~iRis~~-------~~~~~~~~~~~L 347 (353)
T PRK05387 284 GFEVLP--SKANFVFARHP--SHDAAELAAKLRERGIIVRH----FNKP-RIDQFLRITIG-------TDEEMEALVDAL 347 (353)
T ss_pred CCeECC--CcCcEEEEECC--CCCHHHHHHHHHHCCEEEEE----CCCC-CCCCeEEEEeC-------CHHHHHHHHHHH
Confidence 454432 23456777765 46788888889999999952 2211 22467999863 457888777777
Q ss_pred HHHH
Q 032257 82 DAAV 85 (144)
Q Consensus 82 ~~~l 85 (144)
.+++
T Consensus 348 ~~~~ 351 (353)
T PRK05387 348 KEIL 351 (353)
T ss_pred HHHh
Confidence 6654
No 23
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=77.96 E-value=12 Score=30.58 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=41.1
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
|+++.. +....+++++.. ++.++.+.|.+.||.+.. +.. ... +..+||+.. +++|++.+.+.
T Consensus 282 g~~~~~--~~g~~~~~~~~~---~~~~~~~~L~~~gI~v~~----g~~f~~~-~~~iRls~~-------~~~~i~~~~~~ 344 (346)
T TIGR01141 282 GLEVYP--SDANFVLIRFPR---DADALFEALLEKGIIVRD----LNSYPGL-PNCLRITVG-------TREENDRFLAA 344 (346)
T ss_pred CCEECC--CcCCEEEEecCC---CHHHHHHHHHHCCeEEEe----CCCcCCC-CCeEEEecC-------CHHHHHHHHHH
Confidence 555443 245688888764 678888999999998873 322 112 567999953 46777766544
No 24
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=76.17 E-value=10 Score=32.16 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=43.3
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcC--ceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVH--IAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~g--I~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
+...+.++.+..|+++.++.+.|.+.+ |.+-. .+.+ .+.+||.... +.++|++.+++.+.++
T Consensus 299 ~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~--~~~~-----~~~~~l~~~~-----~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 299 ARAEIRFDESELGMTAADVVQALRQGEPAIYTRG--YKAN-----EGIIEIDPRS-----VTGGQLDIIVERIREI 362 (363)
T ss_pred ceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEee--eeec-----CCeEEEEeec-----CCHHHHHHHHHHHHHh
Confidence 445566777667999999999998777 55532 2111 2457877553 7799999999887654
No 25
>PRK07908 hypothetical protein; Provisional
Probab=75.02 E-value=15 Score=30.44 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=44.4
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
.....+|+++.+ ...+.+.|++.||.+. |++. ....+..+||+.. .++|++.+.+-+.+++.
T Consensus 284 ~~g~~~~~~~~~----~~~~~~~l~~~gI~v~----~g~~f~~~~~~~vRis~~-------~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 284 AAAPFVLVRVPD----AELLRKRLRERGIAVR----RGDTFPGLDPDYLRLAVR-------PRAEVPVLVQALAEILK 346 (349)
T ss_pred CCceEEEEECCc----HHHHHHHHHhCCEEEE----ECCCCCCCCCCeEEEEeC-------CCccHHHHHHHHHHHHh
Confidence 446677888753 6788899999999987 3332 2223568999972 57889988888877653
No 26
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=74.85 E-value=15 Score=30.98 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=48.4
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCC---CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV---SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~---~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
..+.++.+++. ++++.++.+.|.+.||.+..-..+..+ ....++.|||+....+ +++|++.+.+.|.+++.
T Consensus 324 ~~~~i~~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~n----t~edid~ll~al~~~~~ 397 (401)
T PRK10874 324 QDSSLLAFDFA--GVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYN----TQSDVDALVNAVDRALE 397 (401)
T ss_pred CCCcEEEEEEC--CcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccC----CHHHHHHHHHHHHHHHH
Confidence 34667777764 567889999999999998853322110 0011367999987764 67899998888877653
No 27
>PRK07179 hypothetical protein; Provisional
Probab=74.50 E-value=14 Score=31.30 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=48.4
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
|+++.+ ..+++.+.+.. ..++..+.+.|.+.||.+..-.-|..+ ...+.|||..... .+++|+.++.+.+
T Consensus 323 g~~v~~---~~~i~~l~~~~-~~~~~~~~~~L~~~GI~~~~~~~p~~~--~~~~~lRis~~~~----~t~edi~~~~~~l 392 (407)
T PRK07179 323 GYNIRS---ESQIIALETGS-ERNTEVLRDALEERNVFGAVFCAPATP--KNRNLIRLSLNAD----LTASDLDRVLEVC 392 (407)
T ss_pred CCCCCC---CCCEEEEEeCC-HHHHHHHHHHHHHCCceEeeecCCCCC--CCCceEEEEECCC----CCHHHHHHHHHHH
Confidence 455552 45777776432 224567778888999986532333322 2246799997654 4679999998888
Q ss_pred HHHHH
Q 032257 82 DAAVK 86 (144)
Q Consensus 82 ~~~l~ 86 (144)
.+++.
T Consensus 393 ~~~~~ 397 (407)
T PRK07179 393 REARD 397 (407)
T ss_pred HHHHH
Confidence 77664
No 28
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=73.21 E-value=21 Score=30.21 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=45.3
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccC--CCCCCC--CCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTV--PGDVSA--MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~l--P~d~~~--~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
.-.+|+++...+++..+..+.|.+.||.+..-.. |+.... ...+.+||+... .+++|++..+.|.+++.
T Consensus 338 g~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~------~~~~l~~~i~~l~~~~~ 410 (416)
T PRK09440 338 AIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ------DDEEIEKGIAILAEEVE 410 (416)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecC------CHHHHHHHHHHHHHHHH
Confidence 4577888876556778888889999998875322 111110 012479999641 47888888877777664
No 29
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=73.13 E-value=19 Score=30.88 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=49.4
Q ss_pred CCccceeeEeccCCCC--------CHHHHHHHHhhcCceeeccc-CCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHH
Q 032257 9 GTENHLVLVNLKNKGI--------DGSRVEKVLEAVHIAANKNT-VPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (144)
Q Consensus 9 gTd~Hlvlvdl~~~gi--------~g~~~~~~Le~~gI~vnkn~-lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia 78 (144)
.++++++-+.+.+... -+..+.+.|.+.||.+.... -|.-. +...|.-|||- ++.+.+++|++++.
T Consensus 298 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~----~~~~~t~eei~~~~ 373 (392)
T PLN03227 298 DPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVV----ANASHTREDIDKLL 373 (392)
T ss_pred CCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEE----ecCCCCHHHHHHHH
Confidence 3578888888743211 12467777888899986421 11111 11224568986 68899999999999
Q ss_pred HHHHHHHH
Q 032257 79 YFFDAAVK 86 (144)
Q Consensus 79 ~~i~~~l~ 86 (144)
+.+.+++.
T Consensus 374 ~~l~~~~~ 381 (392)
T PLN03227 374 TVLGEAVE 381 (392)
T ss_pred HHHHHHHH
Confidence 99988885
No 30
>PRK06108 aspartate aminotransferase; Provisional
Probab=72.79 E-value=17 Score=30.16 Aligned_cols=61 Identities=10% Similarity=0.123 Sum_probs=38.4
Q ss_pred eeeEeccCCCCCHHHHHH-HHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 14 LVLVNLKNKGIDGSRVEK-VLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 14 lvlvdl~~~gi~g~~~~~-~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.+|+++.+. .+..+..+ +|++.||.+- |+.. .+..++.+||+... .++++++..+.|.+++
T Consensus 318 ~~~~~l~~~-~~~~~~~~~ll~~~gV~v~----pg~~f~~~~~~~~Ris~~~------~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 318 YAFFRIPGV-TDSLALAKRLVDEAGLGLA----PGTAFGPGGEGFLRWCFAR------DPARLDEAVERLRRFL 380 (382)
T ss_pred EEEEeCCCC-CCHHHHHHHHHHhCCEEEe----CchhhCCCCCCEEEEEecC------CHHHHHHHHHHHHHHH
Confidence 457777542 35555555 4588999884 4332 22234679997553 6788887777776654
No 31
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=72.67 E-value=29 Score=29.10 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=44.2
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
.....+++++...+.....+.+.|.+.||.+. .|+.. ..+..+||+.. .++|+..+.+.+.+++.
T Consensus 300 ~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~---~p~~~--~~~~~iRis~~-------~~~~~~~~~~al~~~~~ 364 (369)
T PRK08153 300 SATNFVAIDCGRDGAFARAVLDGLIARDIFVR---MPGVA--PLDRCIRVSCG-------PDEELDLFAEALPEALE 364 (369)
T ss_pred CcCcEEEEECCCCcccHHHHHHHHHHCCeEEe---eCCCC--CCCCeEEEecC-------CHHHHHHHHHHHHHHHH
Confidence 44567888875434456677777778899983 24432 12357999965 47889888888777664
No 32
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=72.60 E-value=15 Score=31.16 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=47.2
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHH-hhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~L-e~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
|+++. ..+++++.+.+. .+.+..++.+.| ++.||.+.....|.-+ ...+.|||..+...+ ++|++.+.+.
T Consensus 320 g~~~~--~~~~~~~~i~~~-~~~~~~~~~~~L~~~~GI~v~~~~~p~~~--~~~~~lRis~~~~~t----~edid~l~~a 390 (410)
T PRK13392 320 GIPVM--PSPSHIVPVMVG-DPTLCKAISDRLMSEHGIYIQPINYPTVP--RGTERLRITPTPLHD----DEDIDALVAA 390 (410)
T ss_pred CCCCC--CCCCCEEEEEeC-CHHHHHHHHHHHHHhCCEEEeeeCCCCCC--CCCceEEEEECCCCC----HHHHHHHHHH
Confidence 45543 356788777653 122344566655 6899999975444322 123579999765443 6889888888
Q ss_pred HHHHH
Q 032257 81 FDAAV 85 (144)
Q Consensus 81 i~~~l 85 (144)
+.+++
T Consensus 391 L~~~~ 395 (410)
T PRK13392 391 LVAIW 395 (410)
T ss_pred HHHHH
Confidence 77765
No 33
>PLN02822 serine palmitoyltransferase
Probab=70.73 E-value=21 Score=31.66 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=50.5
Q ss_pred CCeeeeCCCccceeeEeccCC-CC---C---HH-HHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNK-GI---D---GS-RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEED 73 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~-gi---~---g~-~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~d 73 (144)
|+++. .-..+.++++++.+. +. + .. -+.++|++.||.+.....|.-.....+.+|||.. +.+.+++|
T Consensus 389 g~~~~-~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~i----s~~~t~ed 463 (481)
T PLN02822 389 GLSIG-SNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFV----SAGHTESD 463 (481)
T ss_pred CcccC-CCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEE----CCCCCHHH
Confidence 44442 235688888888542 11 1 12 3445566899999965445433222345799974 34568899
Q ss_pred HHHHHHHHHHHHH
Q 032257 74 FAKVAYFFDAAVK 86 (144)
Q Consensus 74 m~~ia~~i~~~l~ 86 (144)
+.+..+.|.+++.
T Consensus 464 I~~~~~~l~~~~~ 476 (481)
T PLN02822 464 ILKASESLKRVAA 476 (481)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887774
No 34
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=70.63 E-value=15 Score=31.00 Aligned_cols=75 Identities=12% Similarity=0.103 Sum_probs=46.2
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHH-hhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~L-e~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
|++++ .++++++.+.+.. .-...++.+.| ++.||.+..-..|.-+ ...+.|||..+.. .+++|+.++.+.
T Consensus 319 g~~~~--~~~~~i~~i~~~~-~~~a~~~~~~L~~~~Gi~v~~~~~p~~~--~g~~~lRis~~~~----~t~edi~~~~~~ 389 (402)
T TIGR01821 319 GIPVI--PNPSHIVPVIIGD-AALCKKVSDLLLNKHGIYVQPINYPTVP--RGTERLRITPTPA----HTDKMIDDLVEA 389 (402)
T ss_pred CCCcC--CCCCCEEEEEeCC-HHHHHHHHHHHHhcCCEEEEeECCCCCC--CCCceEEEEeCCC----CCHHHHHHHHHH
Confidence 55544 2467787776532 11244555555 6779999875444322 1235799997664 456889888888
Q ss_pred HHHHH
Q 032257 81 FDAAV 85 (144)
Q Consensus 81 i~~~l 85 (144)
+.+++
T Consensus 390 l~~~~ 394 (402)
T TIGR01821 390 LLLVW 394 (402)
T ss_pred HHHHH
Confidence 77665
No 35
>PRK09064 5-aminolevulinate synthase; Validated
Probab=70.41 E-value=13 Score=31.38 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=48.0
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHH-hhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~L-e~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
|++++. ..++++.+.+.. .....++.+.| ++.||.+.....|.-+ ...+.|||..+.. .+++|++++.+.
T Consensus 320 g~~~~~--~~~~iv~i~~~~-~~~~~~l~~~L~~~~gi~v~~~~~p~~~--~~~~~lRis~~~~----~t~edi~~l~~~ 390 (407)
T PRK09064 320 GIPVMP--NESHIVPVMVGD-PEKCKKASDMLLEEHGIYVQPINYPTVP--RGTERLRITPTPF----HTDEMIDHLVEA 390 (407)
T ss_pred CCCCCC--CCCCEEEEEeCC-HHHHHHHHHHHHHhCCEEEeeECCCCCC--CCCceEEEEeCCC----CCHHHHHHHHHH
Confidence 566553 457788777532 12345566655 6779999865444321 1224699985433 457999999999
Q ss_pred HHHHHH
Q 032257 81 FDAAVK 86 (144)
Q Consensus 81 i~~~l~ 86 (144)
|.+++.
T Consensus 391 l~~~~~ 396 (407)
T PRK09064 391 LVEVWA 396 (407)
T ss_pred HHHHHH
Confidence 887764
No 36
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=70.05 E-value=12 Score=32.76 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=45.6
Q ss_pred CCeeee--CCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCC-C-CCCCCCceeecchhhhhcCCCHHHHHHH
Q 032257 2 GYELVS--GGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-V-SAMVPGGIRMGTPALTSRGFVEEDFAKV 77 (144)
Q Consensus 2 G~~vv~--ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d-~-~~~~~sgiRlGT~a~TtRG~~e~dm~~i 77 (144)
|-.+++ -.-|-=++++|+....---..+++-|+.+||.+|+ -|.+ . .....+||||..+.- .-++.+++.+.|
T Consensus 131 G~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk--~~p~V~I~kk~~gGI~i~~t~~-l~~~d~~~ir~i 207 (365)
T COG1163 131 GRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNK--RPPDVTIKKKESGGIRINGTGP-LTHLDEDTVRAI 207 (365)
T ss_pred cceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecC--CCCceEEEEeccCCEEEecccc-cccCCHHHHHHH
Confidence 344444 33444456677654331144788999999999997 3444 2 334457999975433 236777777765
Q ss_pred H
Q 032257 78 A 78 (144)
Q Consensus 78 a 78 (144)
-
T Consensus 208 L 208 (365)
T COG1163 208 L 208 (365)
T ss_pred H
Confidence 4
No 37
>PRK00153 hypothetical protein; Validated
Probab=69.72 E-value=14 Score=26.24 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCCC
Q 032257 70 VEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 135 (144)
Q Consensus 70 ~e~dm~~ia~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~~ 135 (144)
.++|.+.+.++|..|+..|.+ ..-+..+++...++..+++|++
T Consensus 61 ~~~d~e~LedlI~~A~n~A~~-----------------------~~~~~~~e~m~~~~gg~~~pgl 103 (104)
T PRK00153 61 DPEDVEMLEDLILAAFNDALR-----------------------KAEETMKEKMGKLTGGLLPPGF 103 (104)
T ss_pred CCcCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhCCCCCCCC
Confidence 457888999999999875422 1223566778888888988875
No 38
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=69.70 E-value=20 Score=29.97 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=45.4
Q ss_pred CeeeeC---CCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCC--------CCCCCCCCCceeecchhhhhcCCCH
Q 032257 3 YELVSG---GTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVP--------GDVSAMVPGGIRMGTPALTSRGFVE 71 (144)
Q Consensus 3 ~~vv~g---gTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP--------~d~~~~~~sgiRlGT~a~TtRG~~e 71 (144)
++++.. ...++++.+.+. +.+..++.+.|++.||.+...... +.+ ...+.|||+....++ +
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~--~~~~~iRis~~~~~t----~ 387 (397)
T TIGR01976 316 VTLYGVARLAARVPTVSFTVH--GLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLN--DEGGVVRVGLAHYNT----A 387 (397)
T ss_pred EEEeCCCCccCCCceEEEEeC--CcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCC--CCCCeEEEEeeccCC----H
Confidence 566553 346778877664 567888999999999999854211 111 123569999877653 5
Q ss_pred HHHHHHHH
Q 032257 72 EDFAKVAY 79 (144)
Q Consensus 72 ~dm~~ia~ 79 (144)
+|+..+.+
T Consensus 388 ~di~~l~~ 395 (397)
T TIGR01976 388 EEVDRLLE 395 (397)
T ss_pred HHHHHHHH
Confidence 67766654
No 39
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=69.33 E-value=18 Score=29.79 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
|++++. ...+++++.+.. +.+..++.+.|.+.||.+..-..|.. +.....|||+.+.. .+++|++++.+.|
T Consensus 311 ~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~~--~~~~~~lRis~~~~----~~~~~i~~~l~~l 381 (385)
T PRK05958 311 GFQLMD--SQSAIQPLIVGD-NERALALAAALQEQGFWVGAIRPPTV--PAGTSRLRITLTAA----HTEADIDRLLEAL 381 (385)
T ss_pred CCCcCC--CCCCEEEEEeCC-HHHHHHHHHHHHHCCceEecccCCCC--CCCCceEEEEecCC----CCHHHHHHHHHHH
Confidence 444443 355678887642 23566788888889999975332221 11135799986432 4678999888887
Q ss_pred HHH
Q 032257 82 DAA 84 (144)
Q Consensus 82 ~~~ 84 (144)
.++
T Consensus 382 ~~~ 384 (385)
T PRK05958 382 AEA 384 (385)
T ss_pred Hhc
Confidence 654
No 40
>PRK14622 hypothetical protein; Provisional
Probab=68.00 E-value=18 Score=26.04 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCCCc
Q 032257 69 FVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFE 136 (144)
Q Consensus 69 ~~e~dm~~ia~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~~~ 136 (144)
+.++|.+.+-++|..|+..|.+ ..-+...++...++..+|+|++.
T Consensus 58 l~~ed~e~LeDLI~aA~N~A~~-----------------------k~~~~~~~~m~~~tgg~~lPG~~ 102 (103)
T PRK14622 58 VDPNDKAMLEDLVTAAVNAAVE-----------------------KARTAADESMSKATGGIKIPGIA 102 (103)
T ss_pred cCcccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhCCCCCCCCC
Confidence 3578999999999998865422 11133557788899999999874
No 41
>PRK14625 hypothetical protein; Provisional
Probab=67.94 E-value=17 Score=26.45 Aligned_cols=45 Identities=20% Similarity=0.034 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCC--CCCCcc
Q 032257 70 VEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFP--TIGFEK 137 (144)
Q Consensus 70 ~e~dm~~ia~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fP--i~~~~~ 137 (144)
.++|-+.+-++|..|+..|.. ..-+...++...++..+| +|++.+
T Consensus 60 ~~eD~e~LeDLI~aA~NdA~~-----------------------k~~~~~~~~m~~~tgg~~~~lPG~~~ 106 (109)
T PRK14625 60 QPGEGEVIADLIVAAHADAKK-----------------------KLDAKQAQLMQEAAGPMAGLMGGLPG 106 (109)
T ss_pred CCccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 667889999999888864322 111345577888999999 898863
No 42
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=67.23 E-value=33 Score=28.46 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=44.5
Q ss_pred CCeeeeCC-CccceeeEeccC-------CCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHH
Q 032257 2 GYELVSGG-TENHLVLVNLKN-------KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEED 73 (144)
Q Consensus 2 G~~vv~gg-Td~Hlvlvdl~~-------~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~d 73 (144)
|++++..+ ..+.+++++... .+-+|.++.+.|.+.||.+.. |+. ..-+|++ +.|.+++|
T Consensus 282 g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~---~~~-----~~~~ri~-----~~g~~~e~ 348 (361)
T cd06452 282 GIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIK---PGL-----TRYFKLS-----TYGLTWEQ 348 (361)
T ss_pred CeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEc---CCC-----ceEEEEE-----ecCCCHHH
Confidence 67776433 345577777531 123466788888888998531 111 1247877 46788899
Q ss_pred HHHHHHHHHHH
Q 032257 74 FAKVAYFFDAA 84 (144)
Q Consensus 74 m~~ia~~i~~~ 84 (144)
++.+.+.+.++
T Consensus 349 ~~~l~~al~~~ 359 (361)
T cd06452 349 VEYVVDAFKEI 359 (361)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 43
>PRK10534 L-threonine aldolase; Provisional
Probab=67.11 E-value=24 Score=28.74 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
|+++. -++++.+++++.. .+..++.+.|.+.||.+.. + +.+||... .| .++++++++-+.+
T Consensus 267 g~~~~--~~~~nfv~~~~~~--~~~~~~~~~l~~~gi~v~~----~-------~~~rl~~~---~r-~t~e~~~~~~~~l 327 (333)
T PRK10534 267 GADVM--RQDTNMLFVRVGE--EQAAALGEYMRERNVLINA----S-------PIVRLVTH---LD-VSREQLAEVVAHW 327 (333)
T ss_pred CCccC--CCCceEEEEECCc--hhHHHHHHHHHHcCeeecC----C-------ceEEEEEE---eC-CCHHHHHHHHHHH
Confidence 55544 2478899998753 2467888999999999942 2 14788653 23 4788888888777
Q ss_pred HHHH
Q 032257 82 DAAV 85 (144)
Q Consensus 82 ~~~l 85 (144)
.+.+
T Consensus 328 ~~~~ 331 (333)
T PRK10534 328 RAFL 331 (333)
T ss_pred HHHh
Confidence 5443
No 44
>PRK08361 aspartate aminotransferase; Provisional
Probab=67.07 E-value=30 Score=29.12 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=39.5
Q ss_pred cceeeEeccCCCCCHHHHHHHH-hhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~L-e~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+-.+|+++...+++..+....| ++.||.+. |+.. ....++.+||+.. ..++++.+-.+.|.+++
T Consensus 323 ~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~----pg~~f~~~~~~~iRi~~~------~~~~~l~~al~~l~~~l 388 (391)
T PRK08361 323 AFYVFANIDETGMSSEDFAEWLLEKARVVVI----PGTAFGKAGEGYIRISYA------TSKEKLIEAMERMEKAL 388 (391)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHhCCEEEc----CchhhCCCCCCEEEEEec------CCHHHHHHHHHHHHHHH
Confidence 3467788876677777777665 57899876 3332 2222467999854 24556555555554444
No 45
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=66.89 E-value=28 Score=28.16 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=40.5
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
.|.+++.....+.+..++.+.|.+.||.+.....+ ..+.....|||+.. .-..++|++++.+.|.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~--~~~~~~~~iRi~~~----~~~~~~~i~~~~~~l~~ 347 (349)
T cd06454 282 SHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYP--TVPRGTARLRISLS----AAHTKEDIDRLLEALKE 347 (349)
T ss_pred CCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCC--ccCCCCCeEEEEEe----CCCCHHHHHHHHHHHHH
Confidence 45544433222446777888888889999863221 11112357999963 33567899988887754
No 46
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=66.17 E-value=16 Score=30.22 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=43.1
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhc-CceeecccC--C--CCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAV-HIAANKNTV--P--GDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~-gI~vnkn~l--P--~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
.+++.+.+ .++++.++.+.|.+. ||.+..... + .+. .+...+.|||+.... .+++|++.+.+.|.+
T Consensus 304 ~~~v~~~~--~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~----~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 304 VGVVSFTV--EGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYF----NTEEEIEKLLEALSE 375 (376)
T ss_pred CCeEEEEE--CCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCC----CCHHHHHHHHHHHhh
Confidence 45666665 367899999999887 999876321 0 000 122346899997554 567888888777643
No 47
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=66.05 E-value=35 Score=29.22 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=42.5
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.-.+|+++.. +..+....|.+.||.+..-..-+... ....|||+... ..++++++..+.|.+++
T Consensus 366 g~f~~~~l~~---~~~~~~~~l~~~gV~v~pg~~f~~~~--~~~~iRis~~~-----~~~~~i~~~~~~l~~~~ 429 (431)
T PRK15481 366 GLNLWLPLDT---DSQATALTLAKSGWLVREGEAFGVSA--PSHGLRITLST-----LNDAEINRLAADLHQAL 429 (431)
T ss_pred eEEEEEECCC---CHHHHHHHHHHCCcEEecCCccccCC--CCCeEEEEcCC-----CChHHHHHHHHHHHHHh
Confidence 3567888753 45677777888999987422211111 13469998533 45789999998888876
No 48
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=65.77 E-value=39 Score=28.36 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=46.3
Q ss_pred CCeeee-CCCccceeeEeccCC-------CCCHHHHHHHHhhcCce-eecccCCCCCCCCCCCceeecchhhhhcCCCHH
Q 032257 2 GYELVS-GGTENHLVLVNLKNK-------GIDGSRVEKVLEAVHIA-ANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEE 72 (144)
Q Consensus 2 G~~vv~-ggTd~Hlvlvdl~~~-------gi~g~~~~~~Le~~gI~-vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~ 72 (144)
|+++++ ...+++.+++++... .-.+..+.+.|.+.||. +. |+. +.-|||.. .|.+++
T Consensus 288 g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir----~~~-----~~~iRis~-----~~~t~e 353 (370)
T TIGR02539 288 GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIR----SGQ-----TKYFKLSV-----YGLTKE 353 (370)
T ss_pred CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcccc----CCc-----ceEEEEEe-----cCCCHH
Confidence 666653 346788998986421 11345688888888996 22 211 23699985 246889
Q ss_pred HHHHHHHHHHHHH
Q 032257 73 DFAKVAYFFDAAV 85 (144)
Q Consensus 73 dm~~ia~~i~~~l 85 (144)
|++++.+.+.+++
T Consensus 354 ~i~~l~~~L~~~~ 366 (370)
T TIGR02539 354 QVEYVVDSFEEIV 366 (370)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877655
No 49
>PRK03321 putative aminotransferase; Provisional
Probab=65.54 E-value=35 Score=28.05 Aligned_cols=55 Identities=11% Similarity=-0.003 Sum_probs=40.2
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
...+|+++. .+..+..+.|.+.||.+.. + ...+|||+. -..++++.+.+.+.+++
T Consensus 295 g~~i~i~l~---~~~~~~~~~l~~~gI~v~~----~-----~~~~iRi~~-------~~~~~~~~~~~al~~~~ 349 (352)
T PRK03321 295 ANFVWLPLG---ERTADFAAAAAEAGVVVRP----F-----AGEGVRVTI-------GAPEENDAFLRAARAWR 349 (352)
T ss_pred CCEEEEeCC---CCHHHHHHHHHHCCEEEEc----c-----CCCcEEEee-------CCHHHHHHHHHHHHHHh
Confidence 346888873 2567788889999999863 2 234799995 36788998888877665
No 50
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=65.11 E-value=49 Score=27.34 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=46.2
Q ss_pred CCeeeeC-CCccce-eeEeccCC-CCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHH
Q 032257 2 GYELVSG-GTENHL-VLVNLKNK-GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (144)
Q Consensus 2 G~~vv~g-gTd~Hl-vlvdl~~~-gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia 78 (144)
|+.+++. ...++. .++.+.+. .++...+.+.|.+.||.+..-..+ .+..||||...- .+.+|+++..
T Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~------~~~~iRi~~~~~----~~~edv~~~l 353 (363)
T TIGR02326 284 GFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVS------QVDCFRIGNIGE----VDAADITRLL 353 (363)
T ss_pred CCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCC------CCCEEEEecCCC----CCHHHHHHHH
Confidence 5555532 223443 33444321 367788888899999998632211 235899996432 2578999988
Q ss_pred HHHHHHH
Q 032257 79 YFFDAAV 85 (144)
Q Consensus 79 ~~i~~~l 85 (144)
+.|.+++
T Consensus 354 ~~l~~~l 360 (363)
T TIGR02326 354 TAIGKAM 360 (363)
T ss_pred HHHHHHh
Confidence 8887766
No 51
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=65.05 E-value=17 Score=24.74 Aligned_cols=52 Identities=12% Similarity=0.023 Sum_probs=34.2
Q ss_pred ecchhhhhcCCCHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCC
Q 032257 59 MGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTI 133 (144)
Q Consensus 59 lGT~a~TtRG~~e~dm~~ia~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~ 133 (144)
+=...+.-+-+.+.+-..|+++|..++..|.. ..-+..++.+..++..+++|
T Consensus 42 v~~i~i~~~~~~~~~~~~L~~~I~~A~n~A~~-----------------------~a~~~~~~~~~~~~g~~~~P 93 (93)
T PF02575_consen 42 VVDIEIDPSALRPLDPEELEDLIVEAVNDAQK-----------------------KAREKAQEEMAELTGGLGLP 93 (93)
T ss_dssp EEEEEE-GGGGCTS-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHTT-S-
T ss_pred EEEEEEehHhhccCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCCC
Confidence 33445556667778899999999999975422 12345777888899888887
No 52
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=64.92 E-value=32 Score=29.08 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=45.4
Q ss_pred CCeeeeCC-CccceeeEecc-------CCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHH
Q 032257 2 GYELVSGG-TENHLVLVNLK-------NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEED 73 (144)
Q Consensus 2 G~~vv~gg-Td~Hlvlvdl~-------~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~d 73 (144)
|++++... ..++++.+|.. ..+.+|.++.+.|.+.||.. ++.+. ..-+|+++ .|.+++|
T Consensus 301 g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~----~~~~~----~~i~ri~~-----~g~t~~d 367 (387)
T PRK09331 301 GFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHG----IKPGA----TKEFKLST-----YGLTWEQ 367 (387)
T ss_pred CEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceE----EccCC----ceEEEEEe-----ccCCHHH
Confidence 77777532 34555556643 23446778999999999962 22211 12377775 6677899
Q ss_pred HHHHHHHHHHHH
Q 032257 74 FAKVAYFFDAAV 85 (144)
Q Consensus 74 m~~ia~~i~~~l 85 (144)
+..+.+.+.+++
T Consensus 368 i~~l~~aL~~i~ 379 (387)
T PRK09331 368 VEYVADAFKEIA 379 (387)
T ss_pred HHHHHHHHHHHH
Confidence 988888876655
No 53
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=64.21 E-value=43 Score=27.65 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=38.4
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
..+|+++. .+..++.+.|.+.||.+......+ .+..|||+.. .++|+..+.+.|.++
T Consensus 302 ~~i~~~~~---~~~~~~~~~l~~~gv~v~~g~~f~-----~~~~iRi~~~-------~~~~~~~l~~al~~~ 358 (359)
T PRK03158 302 NFIFVDTG---RDANELFEALLKKGYIVRSGAALG-----FPTGVRITIG-------LKEQNDKIIELLKEL 358 (359)
T ss_pred cEEEEECC---CCHHHHHHHHHHCCeEEeeCCCCC-----CCCeEEEecC-------CHHHHHHHHHHHHHh
Confidence 36778763 467778888888899887432221 2357999843 678888887776553
No 54
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=62.35 E-value=35 Score=27.18 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=42.3
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
....++++.+.. +.+...+.+.|.+.||.+.....+.. ..++.|||+.... .+|+..+.+.|
T Consensus 287 ~~g~~~~~~~~~-~~~~~~~~~~l~~~gi~i~~~~~~~~---~~~~~iRi~~~~~------~~~i~~~~~al 348 (350)
T cd00609 287 SGGFFLWLDLPE-GDDEEFLERLLLEAGVVVRPGSAFGE---GGEGFVRLSFATP------EEELEEALERL 348 (350)
T ss_pred CccEEEEEecCC-CChHHHHHHHHHhCCEEEeccccccc---CCCCeEEEEeeCC------HHHHHHHHHHh
Confidence 335677777653 24678899999999999886433322 3456899995544 67887776654
No 55
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=61.86 E-value=51 Score=27.22 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 23 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 23 gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
+++..++.+.|.+.||.+..-..+ ..+.+|||+.. -.+++|++.+.+.+.+++.
T Consensus 309 ~~~~~~l~~~L~~~gi~v~~g~~~------~~~~iRis~~~----~~t~edi~~~l~~L~~~l~ 362 (368)
T PRK13479 309 AYDFKEFYERLKEQGFVIYPGKLT------QVDTFRIGCIG----DVDAADIRRLVAAIAEALY 362 (368)
T ss_pred CcCHHHHHHHHHHCCEEEecCCCC------CCCEEEEecCC----CCCHHHHHHHHHHHHHHHH
Confidence 467788888999999999532111 13579999643 2458999999988887764
No 56
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=61.73 E-value=35 Score=27.61 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=45.4
Q ss_pred CCeeeeC-CCccc-eeeEeccC-CCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHH
Q 032257 2 GYELVSG-GTENH-LVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (144)
Q Consensus 2 G~~vv~g-gTd~H-lvlvdl~~-~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia 78 (144)
|++++.. ...+. ++++.+.. ...+..++.+.|.+.||.+..- ... ....|||+.... .+++||+.+.
T Consensus 279 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~----~~~--~~~~iRis~~~~----~~~~~i~~~~ 348 (355)
T TIGR03301 279 GFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPG----KLT--LADTFRIGTIGE----IDAADIERLL 348 (355)
T ss_pred CCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECC----ccc--cccEEEEecCCC----CCHHHHHHHH
Confidence 5554432 22344 34566543 2256678899999999998742 111 115799986443 4578999988
Q ss_pred HHHHHH
Q 032257 79 YFFDAA 84 (144)
Q Consensus 79 ~~i~~~ 84 (144)
+.|.++
T Consensus 349 ~~l~~~ 354 (355)
T TIGR03301 349 EAIKDA 354 (355)
T ss_pred HHHHhh
Confidence 887654
No 57
>PRK10637 cysG siroheme synthase; Provisional
Probab=61.32 E-value=33 Score=30.32 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=52.6
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeec--chhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG--TPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlG--T~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+.|||++-..... -..++.+.+.+.||.||-..-|.......|+=+|-| +.+++|-|-++.=-+.|-+.|.+.+
T Consensus 72 ~~~lv~~at~d~~-~n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~~lr~~ie~~~ 147 (457)
T PRK10637 72 TCWLAIAATDDDA-VNQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLL 147 (457)
T ss_pred CCEEEEECCCCHH-HhHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHHHHHHHHHHhc
Confidence 4566666543334 345667778889999998777776655666767777 5678899998887777777776665
No 58
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=61.07 E-value=44 Score=29.61 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=49.4
Q ss_pred CCccceeeEecc---CCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 9 GTENHLVLVNLK---NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 9 gTd~Hlvlvdl~---~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+.-.|.++++.. ..|++..++.+.|.+.||.+.....|.- ....+|+...+.|++ +|+..+.+.+.++.
T Consensus 375 ~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~----~~~~l~is~~e~~t~----edid~l~~~l~~i~ 446 (481)
T PRK04366 375 RPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLI----VPEALMIEPTETESK----ETLDAFIAAMKQIA 446 (481)
T ss_pred CCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccc----cCCeEEEcccCCCCH----HHHHHHHHHHHHHH
Confidence 344477888853 2366788999999999998774333322 134699998887664 88888888877766
Q ss_pred H
Q 032257 86 K 86 (144)
Q Consensus 86 ~ 86 (144)
.
T Consensus 447 ~ 447 (481)
T PRK04366 447 E 447 (481)
T ss_pred H
Confidence 4
No 59
>PLN00175 aminotransferase family protein; Provisional
Probab=60.96 E-value=39 Score=29.03 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=41.0
Q ss_pred cceeeEeccCCCC-CHH-HHHHHHhhcCceeecccCCCCC----CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGI-DGS-RVEKVLEAVHIAANKNTVPGDV----SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 12 ~Hlvlvdl~~~gi-~g~-~~~~~Le~~gI~vnkn~lP~d~----~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
++.+|+++.+.++ +.. -++.+|++.||.+. |+.. .......|||+.. ..+++|++..+.|.+++
T Consensus 342 ~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~F~~~~~~~~~~iRls~~------~~~e~l~~~~~rL~~~~ 411 (413)
T PLN00175 342 TYFVMVDHTPFGFENDIAFCEYLIEEVGVAAI----PPSVFYLNPEDGKNLVRFAFC------KDEETLRAAVERMKTKL 411 (413)
T ss_pred eEEEEEeccccCCCCHHHHHHHHHHhCCEEEe----CchHhCCCCCCCCCEEEEEEc------CCHHHHHHHHHHHHHHH
Confidence 5778999865565 444 44556688999886 4331 1112346999964 24788888777776655
No 60
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=59.34 E-value=40 Score=28.97 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=45.2
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
|++++ .+..-|.+.+++. .+..++.+.|.+.||.+....-|+.+ .. ..-+|++....++ ++|+.++.+.+
T Consensus 373 g~~~~-~~~~~~~~~v~~~---~~~~~~~~~L~~~gi~~~~~~~~~~~-~~-~~~~rvs~~~~~t----~e~i~~l~~~L 442 (447)
T PRK00451 373 GVELF-DGPFFNEFVVRLP---KPAEEVNEALLEKGILGGYDLGRYYP-EL-GNHLLVCVTEKRT----KEDIDALVAAL 442 (447)
T ss_pred CEEec-CCCeEEEEEEecC---CCHHHHHHHHHhcCCCCCcccccccC-Cc-CCEEEEecCCCCC----HHHHHHHHHHH
Confidence 45555 4444455667752 46788888899999886433333322 11 2468998776654 47888877776
Q ss_pred HHH
Q 032257 82 DAA 84 (144)
Q Consensus 82 ~~~ 84 (144)
.++
T Consensus 443 ~~~ 445 (447)
T PRK00451 443 GEV 445 (447)
T ss_pred HHH
Confidence 544
No 61
>PRK09105 putative aminotransferase; Provisional
Probab=59.24 E-value=63 Score=27.21 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=38.3
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+.-++++++. .+..++.+.|.+.||.+.. ..+ ..++.+||+.. .+++++.+.+.+.+++
T Consensus 310 ~~~f~~~~~~---~~~~~l~~~L~~~gI~v~~-~~~-----~~~~~~Ris~~-------~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 310 QANCFMVDVK---RPAKAVADAMAKQGVFIGR-SWP-----IWPNWVRVTVG-------SEEEMAAFRSAFAKVM 368 (370)
T ss_pred CCcEEEEeCC---CCHHHHHHHHHHCCcEEec-CCC-----CCCCeEEEEcC-------CHHHHHHHHHHHHHHh
Confidence 3446677764 4677777777777999932 221 12467999965 3677887777765543
No 62
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=59.24 E-value=37 Score=28.52 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=46.8
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCC--CC-CCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV--SA-MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~--~~-~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
..++++.+.+. ++++.++.+.|.+.||.+..-.-.... .. ..++.||++..-.| +++|+..+.+.|.+++.
T Consensus 321 ~~~~i~~~~~~--~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~----t~~ei~~l~~~l~~~~~ 394 (398)
T TIGR03392 321 PGSSLLAFDFA--GVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYN----TQQDVDALVDAVGAALE 394 (398)
T ss_pred CCCcEEEEEeC--CcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccC----CHHHHHHHHHHHHHHHH
Confidence 34667776654 678889999999999998743211100 00 01357999976554 46888888888877653
No 63
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=59.22 E-value=59 Score=27.48 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=40.8
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
.....+|+++.. +++..++.+.|.+.||.+.. +.. +..+..+||+.. .++||+.+.+-+.+
T Consensus 318 ~~~~f~~~~~~~-~~~~~~~~~~l~~~gI~v~~----~~~-~~~~~~lRis~~-------~~~~~~~l~~al~~ 378 (380)
T PLN03026 318 SDANFILCRVTS-GRDAKKLKEDLAKMGVMVRH----YNS-KELKGYIRVSVG-------KPEHTDALMEALKQ 378 (380)
T ss_pred CCCeEEEEECCC-CCCHHHHHHHHHHCCeEEEE----CCC-CCCCCEEEEecC-------CHHHHHHHHHHHHH
Confidence 345677888653 56778888888899998853 222 112356999855 46778877776543
No 64
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=58.56 E-value=46 Score=27.47 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=38.4
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
.-.+|+++. +..++.+.|.+.||.+...... .+..+..+||+.. .++++..+.+-+.+
T Consensus 297 ~~~~~~~~~----~~~~~~~~l~~~gI~v~~~~~f---~~~~~~~iRis~~-------~~~~~~~l~~al~~ 354 (356)
T PRK04870 297 ANFILVRVP----DAAAVFDGLKTRGVLVKNLSGM---HPLLANCLRVTVG-------TPEENAQFLAALKA 354 (356)
T ss_pred CeEEEEECC----CHHHHHHHHHHCCEEEEECCCC---CCCCCCeEEEeCC-------CHHHHHHHHHHHHH
Confidence 346788764 5788889999999999742221 1122457999965 46777766665544
No 65
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=58.44 E-value=47 Score=28.15 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=39.9
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecc-hhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT-PALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT-~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+++.+.+. +++.++.+.|.+.||.+.. ..++.|||+. +-.| +++|+..+.+.|.+++
T Consensus 348 ~~v~~~~~---~~~~~~~~~L~~~gi~v~~---------~~~~~iRiS~~~~~n----t~~did~l~~~l~~~~ 405 (406)
T TIGR01814 348 CQLSLTHP---VPGKAVFQALIKRGVIGDK---------REPSVIRVAPVPLYN----TFVDVYDAVNVLEEIL 405 (406)
T ss_pred CeEEEEec---CCHHHHHHHHHHCCEEEec---------cCCCeEEEechhccC----CHHHHHHHHHHHHHHh
Confidence 46666553 4788999999999998852 1135799996 3454 4588888888776543
No 66
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=58.11 E-value=31 Score=29.22 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=37.0
Q ss_pred CCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 24 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 24 i~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.+..++.+.|.+.||.+.. ..+..|||..+ ..++++|++++.+.+.+++
T Consensus 352 ~~~~~l~~~l~~~Gv~v~~---------~~~~~lRi~p~----l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 352 RTAWDLCLKLKEKGLLAKP---------THGNIIRLAPP----LVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred hHHHHHHHHHHhCCEEEEe---------cCCCEEEEeCC----ccCCHHHHHHHHHHHHHHh
Confidence 3567778888889999853 12357999975 4578899999998887765
No 67
>PF05370 DUF749: Domain of unknown function (DUF749); InterPro: IPR008032 This is a family of unknown function found in archaebacterial proteins. The family has been solved via structural genomics techniques and comprises of segregated helical and anti-parallel beta sheet regions. It is a putative metal-binding protein. ; PDB: 1IQS_A 1IQO_A.
Probab=57.94 E-value=7.5 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=23.6
Q ss_pred CCCccceeeEeccCCCCCHHHHHHHHhhcCceeeccc
Q 032257 8 GGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNT 44 (144)
Q Consensus 8 ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~ 44 (144)
-||.+|+|+. +.+.. +=.++.+-|++.|-.+|.++
T Consensus 45 ~gTtSy~v~F-Ld~~~-~ieeIk~eL~e~ga~lN~dS 79 (87)
T PF05370_consen 45 QGTTSYQVFF-LDSYN-SIEEIKEELKEAGAKLNHDS 79 (87)
T ss_dssp TTTT-EEEEE--S----S-HHHHHHHHHHHHSSS-SS
T ss_pred cCCceEEEEE-EcCCC-CHHHHHHHHHHcCceecccH
Confidence 6899988885 33333 67899999999999999764
No 68
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=57.49 E-value=32 Score=29.18 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=46.4
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHh-hcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLE-AVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le-~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
|++++. .+.+++.+.+.. ..+..++.+.|. +.||.+.....|.-+ ...+.|||..+... +++|+.++.+.
T Consensus 319 g~~~~~--~~~~i~~v~~~~-~~~~~~l~~~L~~~~Gi~v~~~~~p~~p--~g~~~iRis~~~~~----t~edid~l~~~ 389 (406)
T PRK13393 319 GIPHLP--NPSHIVPVMVGD-PVLCKQISDELLDRYGIYVQPINYPTVP--RGTERLRITPSPLH----TDADIEHLVQA 389 (406)
T ss_pred CCCcCC--CCCCeEEEEeCC-HHHHHHHHHHHHHhCCEEEEeECCCCCC--CCCceEEEEECCCC----CHHHHHHHHHH
Confidence 455442 356676665421 123455666564 579999875444322 12356999865544 46999999988
Q ss_pred HHHHHH
Q 032257 81 FDAAVK 86 (144)
Q Consensus 81 i~~~l~ 86 (144)
|.+++.
T Consensus 390 l~~~~~ 395 (406)
T PRK13393 390 LSEIWA 395 (406)
T ss_pred HHHHHH
Confidence 877764
No 69
>PRK07683 aminotransferase A; Validated
Probab=57.35 E-value=62 Score=27.26 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=40.7
Q ss_pred cceeeEeccCCCCCHHHHH-HHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVE-KVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~-~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+..+|+.+...+++..+.. .+|++.||.+-.... + .+..+..+||+.. ..++++++--+.|.+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~-f--~~~~~~~~Ri~~~------~~~~~~~~al~~l~~~l 381 (387)
T PRK07683 316 AFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSA-F--SEYGEGYVRLSYA------YSIETLKEGLDRLEAFL 381 (387)
T ss_pred eEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchh-h--CCCCCCeEEEEec------CCHHHHHHHHHHHHHHH
Confidence 4456676665566665554 568999998764221 1 1222467999864 25777777777766655
No 70
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=56.65 E-value=22 Score=31.55 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 23 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 23 gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
|++..++.++.++.||.+-+ || ||+.+ |+.+..++.||+-|.++
T Consensus 352 Gls~~QV~rLree~~IY~v~------------sG-Ri~va-----Gl~~~ni~~va~ai~~v 395 (396)
T COG1448 352 GLSPEQVDRLREEFGIYLVA------------SG-RINVA-----GLNTSNIDYVAKAIAAV 395 (396)
T ss_pred CCCHHHHHHHHHhccEEEec------------CC-eeeec-----cCChhhHHHHHHHHHhh
Confidence 89999999999999999886 45 99965 55567788888887665
No 71
>PRK07777 aminotransferase; Validated
Probab=56.31 E-value=51 Score=27.62 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=38.0
Q ss_pred cceeeEeccCCC-CCHHHHHHHH-hhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKG-IDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 12 ~Hlvlvdl~~~g-i~g~~~~~~L-e~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
+..+|+++++.+ .++.+..+.| ++.||.+..-..-+...+.....+||+.. ..++++++--+.|.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~------~~~~~l~~~l~~l~~ 382 (387)
T PRK07777 315 TYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC------KRDDTLDEAIRRLRA 382 (387)
T ss_pred ceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec------CCHHHHHHHHHHHHH
Confidence 466777876433 3667766666 68999887422111111222457999864 236666665555544
No 72
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=54.55 E-value=64 Score=26.89 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=47.9
Q ss_pred CCeeeeCCC--ccceeeEeccCCCCCHHHHHHHHhhcCceeecc--cCCCCC------------CCCCCCceeecchhhh
Q 032257 2 GYELVSGGT--ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKN--TVPGDV------------SAMVPGGIRMGTPALT 65 (144)
Q Consensus 2 G~~vv~ggT--d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn--~lP~d~------------~~~~~sgiRlGT~a~T 65 (144)
|+.++.... ..+.+++.+. ++++..+...|++.||.+..- +-++.. .+...+.||++..-.|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~ 357 (382)
T TIGR03403 280 DVFVVGDREHRVPNTILISIK--GVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFT 357 (382)
T ss_pred CEEEECCCCCCcCCEEEEEeC--CCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCC
Confidence 455554321 1346666664 678988888899999999841 111111 0111256999976654
Q ss_pred hcCCCHHHHHHHHHHHHHHH
Q 032257 66 SRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 66 tRG~~e~dm~~ia~~i~~~l 85 (144)
+++|+..+.+.|.+++
T Consensus 358 ----t~~did~~~~~l~~~~ 373 (382)
T TIGR03403 358 ----TEEEIDYTIEVFKKAV 373 (382)
T ss_pred ----CHHHHHHHHHHHHHHH
Confidence 4578877777776655
No 73
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=54.52 E-value=65 Score=26.68 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=36.4
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
.-.+|+++. +...+.+.|.+.||.+.. +......+.++||+.. .+++++.+-+.|.+
T Consensus 292 ~~~~~i~~~----~~~~~~~~l~~~gV~v~~----~~~~~~~~~~iRis~~-------~~~~~~~l~~~l~~ 348 (351)
T PRK14807 292 TNFILVKFK----DADYVYQGLLERGILVRD----FSKVEGLEGALRITVS-------SCEANDYLINGLKE 348 (351)
T ss_pred ccEEEEEcC----CHHHHHHHHHHCCEEEEE----CCCCCCCCCeEEEEcC-------CHHHHHHHHHHHHH
Confidence 335778764 467888888889999852 3221122467999965 35667666655544
No 74
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=54.48 E-value=57 Score=26.82 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=39.7
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 82 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~ 82 (144)
...+++.+.+. +...+.+.|.+.||.+.... .+..||++.... .+++|+..+.+.|.
T Consensus 315 ~~~~~v~~~~~----~~~~v~~~L~~~gi~v~~~~--------~~~~iRis~~~~----~t~edid~l~~~L~ 371 (373)
T TIGR03812 315 PVLNIVAFEVD----DPEEVRKKLRDRGWYVSVTR--------CPKALRIVVMPH----VTREHIEEFLEDLK 371 (373)
T ss_pred CCceEEEEEeC----CHHHHHHHHHHCCceeccCC--------CCCEEEEEEECC----CCHHHHHHHHHHHh
Confidence 45677777643 35678888888899986431 135799987653 56788888877654
No 75
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=53.36 E-value=87 Score=25.96 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=39.1
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHH-HHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRV-EKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAY 79 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~-~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~ 79 (144)
|+.+.. +....+|+++.. +..+. +++|++.||.+. |++. ....+..|||+... ++++.++.+
T Consensus 288 ~~~~~~--~~~~fl~~~~~~---~~~~l~~~ll~~~gv~v~----pg~~f~~~~~~~iRi~~~~-------~~~~~~l~~ 351 (360)
T PRK07392 288 GLTPLP--SAANFLLVQSQG---SALQLQEKLLQQHRILIR----DCLSFPELGDRYFRVAVRT-------EAENQRLLE 351 (360)
T ss_pred CcEECC--CCCCEEEEEcCC---CHHHHHHHHHhhCCEEEE----eCCCCCCCCCCEEEEEeCC-------HHHHHHHHH
Confidence 444443 334577788653 34444 455788999987 3432 22234579998543 345666666
Q ss_pred HHHHHH
Q 032257 80 FFDAAV 85 (144)
Q Consensus 80 ~i~~~l 85 (144)
-+.+.+
T Consensus 352 al~~~~ 357 (360)
T PRK07392 352 ALAAIL 357 (360)
T ss_pred HHHHHh
Confidence 655544
No 76
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=53.17 E-value=67 Score=26.67 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=44.2
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeeccc--CCCCC------------CCCCCCceeecchhhhhcCCCHHHHHHHHH
Q 032257 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNT--VPGDV------------SAMVPGGIRMGTPALTSRGFVEEDFAKVAY 79 (144)
Q Consensus 14 lvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~--lP~d~------------~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~ 79 (144)
.+.+.+. ++++.++...|++.||.+..-. -+... ....++.||++..-.|++ +|+..+.+
T Consensus 291 ~~~~~~~--~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~----~di~~~~~ 364 (379)
T TIGR03402 291 TVNISFE--YIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTE----EDIDYVLE 364 (379)
T ss_pred EEEEEec--CCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCH----HHHHHHHH
Confidence 4444433 5788999999999999987411 11111 012247899998777664 78888888
Q ss_pred HHHHHHH
Q 032257 80 FFDAAVK 86 (144)
Q Consensus 80 ~i~~~l~ 86 (144)
.|.+++.
T Consensus 365 ~l~~~~~ 371 (379)
T TIGR03402 365 VLPPIIA 371 (379)
T ss_pred HHHHHHH
Confidence 8776653
No 77
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=52.85 E-value=71 Score=26.74 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=37.6
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
-.+|+++.. +++..++.+.|.+.||.+.. . ++.+||+... ++++++.-+.|.+++
T Consensus 315 ~f~~~~l~~-~~~~~~~~~~l~~~gi~v~~----~------~~~lRls~~~-------~~~~~~~l~~l~~~l 369 (374)
T PRK02610 315 NFLYLRLSQ-DAALAALHQALKAQGTLVRH----T------GGGLRITIGT-------PEENQRTLERLQAAL 369 (374)
T ss_pred eEEEEeCCC-CCCHHHHHHHHHHCCEEEEe----C------CCeEEEeCCC-------HHHHHHHHHHHHHHH
Confidence 367888753 56788888899999999852 1 2579998542 356666555555544
No 78
>PLN02955 8-amino-7-oxononanoate synthase
Probab=52.58 E-value=58 Score=29.48 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=51.0
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
.+|++.|-+.... ....+.+.|.+.||.|+.-.-|.-+ ...+.|||.. +-+.+++|++.+.+.+.++..
T Consensus 392 ~sPI~pI~ig~~~-~a~~~~~~L~~~Gi~v~~i~yPtVP--~g~~rLRi~l----sA~Ht~edId~lv~~L~~~~~ 460 (476)
T PLN02955 392 SSPIISLVVGNQE-KALKASRYLLKSGFHVMAIRPPTVP--PNSCRLRVTL----SAAHTTEDVKKLITALSSCLD 460 (476)
T ss_pred CCCEEEEEeCCHH-HHHHHHHHHHHCCCEEEEECCCCCC--CCCceEEEee----CCCCCHHHHHHHHHHHHHHHh
Confidence 3788877664333 6677888999999999976666553 2346799986 556778999999998877664
No 79
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=52.54 E-value=86 Score=25.99 Aligned_cols=63 Identities=5% Similarity=0.051 Sum_probs=41.1
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
+.-.+|+++.. ++.++.+.|.+.||.+..-... ....+..|||+.. ++++++.+-+.+.++++
T Consensus 292 ~~~~~~~~~~~---~~~~~~~~l~~~gI~v~~~~~f---~~~~~~~iRis~~-------~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 292 RANYLFLRCER---PDIDLQRALLTQRILIRSCANY---PGLDSRYYRVAIR-------SAAENERLLAALRNVLT 354 (356)
T ss_pred CCcEEEEEcCC---ChHHHHHHHHHCCeEEEECCCC---CCCCCCEEEEEEc-------CHHHHHHHHHHHHHHHc
Confidence 44567787652 4567777887899988742211 1222357999963 56888888888776553
No 80
>PRK02948 cysteine desulfurase; Provisional
Probab=51.82 E-value=55 Score=27.23 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhhcCceeecccC---CCC-----------CCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 22 KGIDGSRVEKVLEAVHIAANKNTV---PGD-----------VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 22 ~gi~g~~~~~~Le~~gI~vnkn~l---P~d-----------~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.++++.++...|++.||.+....- +.- +.+...+.|||+.... .+++|+..+.+.|.+++
T Consensus 299 ~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~----~t~~di~~l~~~l~~~~ 372 (381)
T PRK02948 299 KGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQ----TTKDQIDTTIHALETIG 372 (381)
T ss_pred CCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCC----CCHHHHHHHHHHHHHHH
Confidence 367788888889999999985221 110 0111235799996544 46789988888877665
No 81
>PRK06207 aspartate aminotransferase; Provisional
Probab=51.47 E-value=80 Score=26.91 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=39.6
Q ss_pred ceeeEeccCCCCCHHHHHHHH-hhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~L-e~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
-.+|+++...+++..+..+.| ++.||.+- |+.. .+..+..+||+... .++++++--+.|.+++
T Consensus 336 ~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~----pG~~F~~~~~~~~Ris~~~------~~~~l~~al~rl~~~l 400 (405)
T PRK06207 336 SYLFPRLPRLAVSLHDFVKILRLQAGVIVT----PGTEFSPHTADSIRLNFSQ------DHAAAVAAAERIAQLI 400 (405)
T ss_pred EEEEEeCcccCCCHHHHHHHHHHhcCEEEe----CchHhCCCCCCeEEEEecC------CHHHHHHHHHHHHHHH
Confidence 377889876566777777766 58999886 4432 22224579999642 3566666555554444
No 82
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=51.32 E-value=41 Score=28.43 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=47.2
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeeccc---CCCCCCCCCCCceeecchhhhhcCCCHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNT---VPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~---lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia 78 (144)
|+++++..--.+++.+.+. ++++.++.+.|++.||.+..-. .|.-.....++.||++....|+ ++|++.+.
T Consensus 322 ~~~~~~~~~~~~iv~~~~~--~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt----~~did~l~ 395 (406)
T PRK09295 322 DLTLYGPQNRLGVIAFNLG--KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT----HEEVDRLV 395 (406)
T ss_pred CEEEeCCCCCceEEEEEEC--CcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCC----HHHHHHHH
Confidence 4455542212466666654 5688899999999999986421 1100000112459999776554 67888888
Q ss_pred HHHHHHH
Q 032257 79 YFFDAAV 85 (144)
Q Consensus 79 ~~i~~~l 85 (144)
+.|.++.
T Consensus 396 ~~l~~i~ 402 (406)
T PRK09295 396 AGLQRIH 402 (406)
T ss_pred HHHHHHH
Confidence 8776543
No 83
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=50.75 E-value=26 Score=31.00 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=39.9
Q ss_pred cceeeEeccCCCCCH-HHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDG-SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA 78 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g-~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia 78 (144)
|=|+|+|+|..|++. .-.+-+|+++++.+|.=..-|... .+-+|+- .-|.|-.-++-++.|+
T Consensus 319 TYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g---~gf~RlN--~acpr~~L~eal~ri~ 381 (388)
T COG1168 319 TYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEG---SGFVRLN--FACPRAILEEALERLK 381 (388)
T ss_pred ceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCC---CceEEEe--cCCCHHHHHHHHHHHH
Confidence 468999999999996 777788999999999633333222 1237763 2244444444444444
No 84
>PRK05839 hypothetical protein; Provisional
Probab=49.37 E-value=92 Score=26.13 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=36.7
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
=.+|+++.+ +..-+++++++.||.+..-...+. +...++.+||+.. ..++++.+..+.|.+++
T Consensus 310 ~fi~~~~~~---~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~~~iRis~~------~~~~~~~~~l~~l~~~l 372 (374)
T PRK05839 310 FYVWLPVDN---DEEFTKKLYQNEGIKVLPGSFLGR-NGIGKGYVRIALV------YDTPKLEKALEIIKTYL 372 (374)
T ss_pred EEEEEeCCC---hHHHHHHHHHHCCEEEeCchhhCC-CCCCCCeEEEEec------CCHHHHHHHHHHHHHHh
Confidence 366787752 233444445679998874222111 1123578999972 24677777776666655
No 85
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=49.08 E-value=83 Score=23.24 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=36.9
Q ss_pred eeeEeccC-CCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 14 LVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 14 lvlvdl~~-~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
.+.+-|+. +||.-..|..+|..+||..|. |+| -++++++..|.++|.+
T Consensus 14 ~v~~aLt~i~GIG~~~A~~ic~~lgi~~~~---------------~~~-------~Lt~~qi~~l~~~i~~ 62 (122)
T CHL00137 14 RIEYALTYIYGIGLTSAKEILEKANIDPDI---------------RTK-------DLTDEQISALREIIEE 62 (122)
T ss_pred EeeeeecccccccHHHHHHHHHHcCcCcCc---------------Ccc-------cCCHHHHHHHHHHHHH
Confidence 33444443 699999999999999987663 444 4889999999999865
No 86
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=49.00 E-value=35 Score=28.16 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=45.4
Q ss_pred CCeeeeC-CCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCC---CCCCCCCceeecchhhhhcCCCHHHHHHH
Q 032257 2 GYELVSG-GTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD---VSAMVPGGIRMGTPALTSRGFVEEDFAKV 77 (144)
Q Consensus 2 G~~vv~g-gTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d---~~~~~~sgiRlGT~a~TtRG~~e~dm~~i 77 (144)
|++++.. ..+.+++.+.+. ++++.++.+.|.+.||.+..-..... .....+..||+.....| +++||+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~----t~~di~~~ 369 (373)
T cd06453 296 GVRVYGDAEDRAGVVSFNLE--GIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYN----TEEEIDAL 369 (373)
T ss_pred CeEEeCCccccCCeEEEEEC--CcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCC----CHHHHHHH
Confidence 4556532 245778888764 46888999999999998863221100 01112457999976554 45777777
Q ss_pred HHH
Q 032257 78 AYF 80 (144)
Q Consensus 78 a~~ 80 (144)
++.
T Consensus 370 ~~~ 372 (373)
T cd06453 370 VEA 372 (373)
T ss_pred Hhh
Confidence 654
No 87
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=48.95 E-value=45 Score=27.05 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=44.0
Q ss_pred CCeeeeCCCccceeeEeccCC---CCCHHHHHHHHhhcCce-eecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNK---GIDGSRVEKVLEAVHIA-ANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKV 77 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~---gi~g~~~~~~Le~~gI~-vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~i 77 (144)
|+.++ +..+..++.+.+.+. +++..++.+.|.+.|+. +.....+ .+..+||+..... .+++|++.+
T Consensus 269 ~~~~~-~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~------~~~~lRis~~~~~---~t~~di~~l 338 (345)
T cd06450 269 GFELL-GEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLG------GPNVLRFVVTNPL---TTRDDADAL 338 (345)
T ss_pred CeEEe-cCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEEC------CeEEEEEEecCCC---CCHHHHHHH
Confidence 44454 335678888887653 46677788888888654 4322121 2357999865431 256888887
Q ss_pred HHHHHH
Q 032257 78 AYFFDA 83 (144)
Q Consensus 78 a~~i~~ 83 (144)
.+-|.+
T Consensus 339 ~~~l~~ 344 (345)
T cd06450 339 LEDIER 344 (345)
T ss_pred HHHHHh
Confidence 776543
No 88
>PRK08175 aminotransferase; Validated
Probab=48.69 E-value=1.2e+02 Score=25.64 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=37.7
Q ss_pred ceeeEeccCC--CCCHHHHH-HHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNK--GIDGSRVE-KVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~--gi~g~~~~-~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
=.+|+++... .++..++. ++|++.||.+..-...+ +..+..|||+.. -.++.|++.-+.|.+++
T Consensus 321 ~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~---~~~~~~lRis~~------~~~~~~~~al~~l~~~l 387 (395)
T PRK08175 321 MYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFG---DYGDTHVRFALI------ENRDRIRQAIRGIKAMF 387 (395)
T ss_pred EEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhC---cCCCCeEEEEeC------CCHHHHHHHHHHHHHHH
Confidence 3677887542 23455565 46778999997432211 222357999752 24566766666665555
No 89
>PRK08636 aspartate aminotransferase; Provisional
Probab=48.29 E-value=1.1e+02 Score=25.86 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=38.7
Q ss_pred eeeEeccCC--CCCHHHHH-HHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 14 LVLVNLKNK--GIDGSRVE-KVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 14 lvlvdl~~~--gi~g~~~~-~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
.+|+++.+. +++..+.. +.|++.||.+. |+.. .......+||+.. ..++++++..+.|.+++.
T Consensus 333 ~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~----pg~~f~~~~~~~iRi~~~------~~~~~l~~~~~rl~~~l~ 399 (403)
T PRK08636 333 FVWAKIPEPARHLGSLEFSKQLLTEAKVAVS----PGIGFGEYGDEYVRIALI------ENENRIRQAARNIKKFLK 399 (403)
T ss_pred EEEEECCCccCCCCHHHHHHHHHHhCCEEEe----cchhhCcCCCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 668887642 33445554 56778999876 3432 1112357999863 246777777777666653
No 90
>PRK06348 aspartate aminotransferase; Provisional
Probab=48.27 E-value=94 Score=26.06 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=35.0
Q ss_pred ceeeEeccCCCCCHHHHHHH-HhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~-Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
-.+|+++...+++..+.... +++.||.+-. +.. .....+.|||+.. ..++++++-.+.|
T Consensus 319 ~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~p----g~~f~~~~~~~iRi~~~------~~~~~l~~al~~l 379 (384)
T PRK06348 319 IYAFINIKKTGLSSVEFCEKLLKEAHVLVIP----GKAFGESGEGYIRLACT------VGIEVLEEAFNRI 379 (384)
T ss_pred EEEEEecccCCCCHHHHHHHHHHhCCEEEcC----chhhccCCCCeEEEEec------CCHHHHHHHHHHH
Confidence 35678876556777765554 5789998863 332 1112468999962 2355555444433
No 91
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=48.13 E-value=46 Score=27.89 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 23 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 23 gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
+..+..+.+.|++.||.+..-+.|. .+.||+....-+ +++|++.+.+.|.+++.
T Consensus 296 ~~~~~~~~~~L~~~gi~v~~~~~~~------~~~iRis~~~~~----t~edid~l~~~L~~~~~ 349 (370)
T PRK05937 296 GISEQELYSKLVETGIRVGVVCFPT------GPFLRVNLHAFN----TEDEVDILVSVLATYLE 349 (370)
T ss_pred ChhHHHHHHHHHHCCeeEEeeCCCC------CCEEEEEcCCCC----CHHHHHHHHHHHHHHHH
Confidence 3467888999999999987433331 236999876554 56999999999888774
No 92
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=47.09 E-value=63 Score=26.09 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=40.7
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
...++++++.. +.++.++.+.|.+.||.+.....|+.. .....|||+....+ +++||+++.+.|
T Consensus 296 ~~~~~~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~~~--~~~~~iRis~~~~~----~~~~i~~~l~~l 359 (360)
T TIGR00858 296 CTPIVPVIIGD-NASALALAEELQQQGIFVGAIRPPTVP--AGTSRLRLTLSAAH----TPGDIDRLAEAL 359 (360)
T ss_pred CCCEEEEEeCC-HHHHHHHHHHHHHCCeeEeeeCCCCCC--CCCceEEEEEcCCC----CHHHHHHHHHhh
Confidence 34578887642 345778888899999999854333321 11246999976543 357777766543
No 93
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.03 E-value=60 Score=23.60 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCCC
Q 032257 71 EEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 135 (144)
Q Consensus 71 e~dm~~ia~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~~ 135 (144)
++|.+.+-++|..|++-|.+ ..-+..+++..+++..+| |+|
T Consensus 64 peD~E~LeDLi~aA~ndA~~-----------------------kv~e~~~e~m~~~t~gm~-PG~ 104 (105)
T COG0718 64 PEDKEMLEDLILAAFNDAKK-----------------------KVEETRKEKMGALTGGMP-PGF 104 (105)
T ss_pred cccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhhccCC-CCC
Confidence 78899999999888864311 122345778888998887 664
No 94
>PRK07682 hypothetical protein; Validated
Probab=46.61 E-value=1.2e+02 Score=25.24 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=38.5
Q ss_pred ceeeEeccCCCCCHHHHHHH-HhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~-Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
..+|+++...+++..+..+. |++.||.+..-.. + .+..++.+||+.. ..++++++--+.|.+++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~-f--~~~~~~~iRis~~------~~~~~l~~~l~~l~~~l 374 (378)
T PRK07682 310 FYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSV-F--GESGEGFIRCSYA------TSLEQLQEAMKRMKRFV 374 (378)
T ss_pred EEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchh-h--CcCCCCeEEEEeC------CCHHHHHHHHHHHHHHH
Confidence 45667776556677766655 5688998874221 1 1112467999854 13566666666665554
No 95
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=44.80 E-value=82 Score=26.19 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=40.5
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.+++++++.. +...+.+.|.+.||.+-. .. ...|||..+.. .+++++.++.+.|.++|
T Consensus 320 g~~~~i~~~~---~~~~~~~~l~~~gv~v~~----~g-----~~~lRi~p~~~----~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 320 GLMIGIECTE---EVAPVIEQLREEGLLVLS----AG-----PNVIRLLPPLV----VTKEELDQAVYLLKKVL 377 (377)
T ss_pred ceEEEEEecc---hHHHHHHHHHHCCeEEec----CC-----CCEEEEECCcc----cCHHHHHHHHHHHHHhC
Confidence 4688888754 266778889999998842 21 24699985432 55788888888876653
No 96
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=44.38 E-value=1.2e+02 Score=25.42 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=40.4
Q ss_pred eeeEeccC-CCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 14 LVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 14 lvlvdl~~-~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
++++.+.. .+.+...+.+.|.+.||.+.. . ....|||+.+ -.++++|+++..+.|.+++.
T Consensus 334 ~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~----~-----~~~~lRi~~~----~~~~~~~i~~~l~~l~~~l~ 394 (400)
T PTZ00125 334 LNAIVFDHSDGVNAWDLCLKLKENGLLAKP----T-----HDNIIRFAPP----LVITKEQLDQALEIIKKVLK 394 (400)
T ss_pred EEEEEEccCcchHHHHHHHHHHHCCeEEee----c-----CCCEEEEECC----ccCCHHHHHHHHHHHHHHHH
Confidence 44454432 234556667777788999852 2 1356999965 33678999999999888774
No 97
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=44.28 E-value=1.5e+02 Score=26.21 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=42.9
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 14 lvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.+|+++ +.+++...+...+.+.|+.+-.-.-.+...+...+++|||-...+ ++++++-...+.+++
T Consensus 388 flwl~l-~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~-----~e~i~~gi~~l~~~~ 453 (459)
T COG1167 388 FLWLEL-PEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPS-----EEEIEEGIKRLAALL 453 (459)
T ss_pred EEEEEc-CCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCC-----HHHHHHHHHHHHHHH
Confidence 456665 457888888888888998887633333332224569999966655 466665555555555
No 98
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=44.25 E-value=1.3e+02 Score=25.19 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=38.8
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
+| +|+++. +..++.+.|.+.||.+... +..+..+..+||+.. .+++|..+.+.+.+.
T Consensus 304 ~f-~~~~~~----~~~~~~~~l~~~gI~v~~~----~~~~~~~~~~Ris~~-------~~~~~~~l~~al~~~ 360 (364)
T PRK04781 304 NF-LLVRFD----DAEAAFQALLAAGVVVRDQ----RAAPRLSDALRITLG-------TPEQNDRVLAALQRT 360 (364)
T ss_pred cE-EEEEcC----CHHHHHHHHHHCCeEEeeC----CCCCCCCCeEEEeCC-------CHHHHHHHHHHHHHH
Confidence 54 677774 4678888999999999742 211112356999964 478888888776553
No 99
>PRK05764 aspartate aminotransferase; Provisional
Probab=43.91 E-value=1.7e+02 Score=24.37 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=41.8
Q ss_pred CCeeeeCCCccceeeEeccCC----CCCHHHHH-HHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNK----GIDGSRVE-KVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAK 76 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~----gi~g~~~~-~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ 76 (144)
|+++. ...-+..+|+++... +.+..+.. .+|++.||.+-. +..-+. ...+||+.. ..+++|.+
T Consensus 313 g~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~----g~~f~~-~~~vRis~~------~~~~~~~~ 380 (393)
T PRK05764 313 GLECP-KPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVP----GIAFGA-PGYVRLSYA------TSLEDLEE 380 (393)
T ss_pred CCccc-CCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEcc----ccccCC-CCEEEEEec------CCHHHHHH
Confidence 44443 234455677887542 11235554 556788998753 322111 467999843 35788877
Q ss_pred HHHHHHHHHH
Q 032257 77 VAYFFDAAVK 86 (144)
Q Consensus 77 ia~~i~~~l~ 86 (144)
..+.|.+++.
T Consensus 381 ~i~~l~~~~~ 390 (393)
T PRK05764 381 GLERIERFLE 390 (393)
T ss_pred HHHHHHHHHH
Confidence 7777766653
No 100
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=43.69 E-value=1e+02 Score=26.03 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=42.7
Q ss_pred EeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 17 VNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 17 vdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
+.+ ..|++..++...|++.||.+... ... ....-+|||.... .+++|++.+.+.|.++++
T Consensus 300 v~~-~~g~~~~~v~~~L~~~gI~i~~~---~~~--l~~~~vRis~~~~----~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 300 IDF-VDDIDAATVAKILRANGIVDTEP---YRK--LGRNQLRVAMFPA----IDPDDVEALTECVDWVVE 359 (361)
T ss_pred EEC-CCccCHHHHHHHHHHCCCeeccC---ccc--cCCCcEEEEcCCC----CCHHHHHHHHHHHHHHHh
Confidence 445 46899999999999999998431 111 2234599997664 447889888888877653
No 101
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=43.69 E-value=22 Score=31.54 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=17.8
Q ss_pred cCCCCCHHHHHHHHhhcCceeecc
Q 032257 20 KNKGIDGSRVEKVLEAVHIAANKN 43 (144)
Q Consensus 20 ~~~gi~g~~~~~~Le~~gI~vnkn 43 (144)
+..|++|..+++.|.+.||.+.+.
T Consensus 377 ~~~Gi~g~~~~~~L~~~~I~~Ek~ 400 (417)
T PF01276_consen 377 SELGIPGYIVEKYLREHGIQVEKT 400 (417)
T ss_dssp -SS---HHHHHHHHHHTTEE-SEE
T ss_pred cccCCCHHHHHHHHHHcCCEEEec
Confidence 678999999999999999999985
No 102
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=42.26 E-value=2e+02 Score=23.99 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=37.5
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
-.+|+++. .+..++.+.|.+.||.+- |+... ..+..|||+.. .+++++.+.+-+.+.
T Consensus 312 ~fl~~~~~---~~~~~l~~~l~~~gi~v~----p~~~~-~~~~~iRi~~~-------~~~~~~~l~~~l~~i 368 (371)
T PRK05166 312 NFLFFDAR---RPASAVAEALLRQGVIVK----PWKQP-GFETFIRVSIG-------SPEENDHFVAALDKV 368 (371)
T ss_pred CEEEEeCC---CCHHHHHHHHHHCCeEEe----cCCCC-CCCCeEEEEcC-------CHHHHHHHHHHHHHH
Confidence 35688864 256777778878899876 34321 12567999976 356677777766554
No 103
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=42.21 E-value=1.3e+02 Score=25.35 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=39.7
Q ss_pred CCCccceeeEeccCCCCCHHH-HHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 8 GGTENHLVLVNLKNKGIDGSR-VEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 8 ggTd~Hlvlvdl~~~gi~g~~-~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
++...-.+|+++.. +++..+ ++.+|++.||.+.. ++. .......+||+.. + .+++|++-.+.|.++
T Consensus 334 ~~~~~~f~~v~l~~-~~~~~~l~~~l~~~~gv~v~p----g~~f~~~~~~~iRis~~-----~-~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 334 GGEHAPYLWVKTPE-GISSWDFFDFLLYQYHVVGTP----GSGFGPSGEGFVRFSAF-----G-KRENIVEACERIKEA 401 (402)
T ss_pred CCCceeEEEEECCC-CCCHHHHHHHHHHhCCEEEeC----chhhCCCCCCEEEEEec-----C-CHHHHHHHHHHHHhh
Confidence 34455577888754 556655 55556789998874 332 1112357999932 2 567777666665543
No 104
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=42.03 E-value=1.2e+02 Score=24.98 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=32.6
Q ss_pred CHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 25 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 25 ~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
+..++.+.|.+.||.+.. +. .+..|||+... .++++.++.+-+...
T Consensus 280 ~~~~~~~~l~~~gi~v~~----f~----~~~~iRis~~~------~~~~~~~l~~al~~~ 325 (330)
T PRK05664 280 DAAALHEFLARRGILTRL----FE----QPASLRFGLPA------DEADWARLDQALLAY 325 (330)
T ss_pred CHHHHHHHHHHCCeEEEE----CC----CCCeEEEECCC------CHHHHHHHHHHHHHH
Confidence 678888999999999952 21 23589999654 357777777665443
No 105
>PRK08960 hypothetical protein; Provisional
Probab=41.85 E-value=1.5e+02 Score=24.85 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=36.8
Q ss_pred cceeeEeccCCCCCHHHHHH-HHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEK-VLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~-~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
.-.+|+++...+.+..+..+ +|++.||.+..-...+.. .....+||+... ..+.+.+..+.|.++
T Consensus 319 ~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~~iRi~~~~------~~~~l~~al~~l~~~ 384 (387)
T PRK08960 319 AFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRH--QAGQHVRFAYTQ------SLPRLQEAVERIARG 384 (387)
T ss_pred eEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCC--CCCCeEEEEecC------CHHHHHHHHHHHHHH
Confidence 45678888654456666654 568899988742221111 123579998653 245555544444443
No 106
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=41.55 E-value=95 Score=25.95 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=39.1
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
.-++++++. .+..++.+.|.+.||.+. |. ..+.|||..+.. ++++|+++.-+.|.++
T Consensus 318 g~~~~~~~~---~~~~~~~~~l~~~Gi~v~----~~-----~~~~lR~~~~~~----~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 318 GYMIGIETT---ADLSQLVEAARDKGLIVL----TA-----GTNVIRLLPPLT----LTKEEIEQGIAILSEV 374 (375)
T ss_pred ceEEEEEec---CcHHHHHHHHHhCCCEEe----cC-----CCCEEEEcCCCc----cCHHHHHHHHHHHHHh
Confidence 345666663 256788889999999884 22 236799996433 4578888888777554
No 107
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=41.34 E-value=1.8e+02 Score=24.12 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=37.6
Q ss_pred ccceeeE-eccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLV-NLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 11 d~Hlvlv-dl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+..++++ ++. +...+.+.|.+.||.+... . .+..+||+.. .+++|..+.+.+.+++
T Consensus 306 ~~~~~~~~~~~----~~~~~~~~l~~~Gv~v~~~----~----~~~~iRi~~~-------~~~~~~~~~~~l~~~~ 362 (368)
T PRK03317 306 DANFVLFGRFA----DRHAVWQGLLDRGVLIRDV----G----IPGWLRVTIG-------TPEENDAFLAALAEVL 362 (368)
T ss_pred CCcEEEEeccC----CHHHHHHHHHHCCEEEEeC----C----CCCeEEEecC-------CHHHHHHHHHHHHHHH
Confidence 3445554 442 5678888888999998632 1 1357999954 4578888877776665
No 108
>PLN02397 aspartate transaminase
Probab=41.31 E-value=67 Score=27.69 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=34.8
Q ss_pred CHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 25 DGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 25 ~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
+...+.++|+++||.+.. +| ||.. -|..++++.++++-|.+++.
T Consensus 377 ~~~~~~~Ll~~~~V~v~~------------~~-Ri~~-----~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 377 NKEQVDRMTKEYHIYMTR------------DG-RISM-----AGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred CHHHHHHHHHhCCEEECC------------CC-eEEE-----eeCCHHHHHHHHHHHHHHHh
Confidence 467888999999999952 34 8874 34667899999999999885
No 109
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=40.98 E-value=52 Score=28.01 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=49.5
Q ss_pred CCeeeeCCC-----ccceeeEeccCCCCCHHHHHHHHhhc-Cceeeccc---CCCCCCCCCCCceeecchhhhhcCCCHH
Q 032257 2 GYELVSGGT-----ENHLVLVNLKNKGIDGSRVEKVLEAV-HIAANKNT---VPGDVSAMVPGGIRMGTPALTSRGFVEE 72 (144)
Q Consensus 2 G~~vv~ggT-----d~Hlvlvdl~~~gi~g~~~~~~Le~~-gI~vnkn~---lP~d~~~~~~sgiRlGT~a~TtRG~~e~ 72 (144)
|+++++... -.+++.+.+. ++++.++.+.|.+. ||.+..-. -|.-..-..+..|||+..-.|+ ++
T Consensus 330 g~~i~~~~~~~~~~r~~~v~~~~~--~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt----~~ 403 (424)
T PLN02855 330 GVRIYGPKPSEGVGRAALCAFNVE--GIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNT----KE 403 (424)
T ss_pred CEEEeCCCcccccCcccEEEEEEC--CcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCC----HH
Confidence 566665321 1246666553 57888999999887 99877421 1100000112469999877765 48
Q ss_pred HHHHHHHHHHHHHH
Q 032257 73 DFAKVAYFFDAAVK 86 (144)
Q Consensus 73 dm~~ia~~i~~~l~ 86 (144)
|++.+.+.|.+++.
T Consensus 404 di~~l~~~l~~~~~ 417 (424)
T PLN02855 404 EVDAFIHALKDTIA 417 (424)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877764
No 110
>PRK07337 aminotransferase; Validated
Probab=40.96 E-value=1.8e+02 Score=24.33 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=38.8
Q ss_pred CccceeeEeccCC----CCCHHHH-HHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNK----GIDGSRV-EKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 10 Td~Hlvlvdl~~~----gi~g~~~-~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
.....+|++++.. .++..+. +++|++.||.+..-..-+.. .....+||+... .++++++--+.|.++
T Consensus 315 ~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~--~~~~~~Ri~~~~------~~~~l~~~l~rl~~~ 386 (388)
T PRK07337 315 DGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPH--APRDYIRLSYAT------SMSRLEEAVARLGKL 386 (388)
T ss_pred CeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCC--CCCCEEEEEecC------CHHHHHHHHHHHHHH
Confidence 3456888998753 2466664 46688999988632111111 123579998642 356665555555443
No 111
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=40.81 E-value=1.3e+02 Score=24.75 Aligned_cols=69 Identities=16% Similarity=0.086 Sum_probs=39.9
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
+..++.+.+. .+.+..++.+.|.+.||.+.....|.. +.....|||+.... .+++|+++..+.|.+++.
T Consensus 324 ~~~~~~~~~~-~~~~~~~~~~~L~~~gI~v~~~~~~~~--~~~~~~iRi~~~~~----~~~~~i~~~l~~L~~~~~ 392 (397)
T PRK06939 324 EHPIIPVMLG-DAKLAQEFADRLLEEGVYVIGFSFPVV--PKGQARIRTQMSAA----HTKEQLDRAIDAFEKVGK 392 (397)
T ss_pred CCCEEEEEEC-CHHHHHHHHHHHHHCCceEeeeCCCCC--CCCCceEEEEECCC----CCHHHHHHHHHHHHHHHH
Confidence 3444444332 223456666666666999874332221 11234699885432 457888888888877663
No 112
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=40.38 E-value=1e+02 Score=25.39 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=37.8
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
.++++.+.+ +..++.+.|.+.||.+.. .. +..|||..+.. .+++++++.-+.|.++
T Consensus 323 ~~~~~~~~~---~~~~~~~~l~~~Gv~v~~----~~-----~~~lRi~~~~~----~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 323 LMLGIELEA---PCKDIVKKALEKGLLVNC----AG-----PKVLRFLPPLI----ITKEEIDEAVSALEEA 378 (379)
T ss_pred eEEEEEecC---cHHHHHHHHHHCCcEEee----CC-----CCEEEEECCCc----CCHHHHHHHHHHHHHh
Confidence 356666543 367888889999999873 11 25699985432 2368888887777654
No 113
>PRK14624 hypothetical protein; Provisional
Probab=40.25 E-value=76 Score=23.33 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCCC
Q 032257 70 VEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGF 135 (144)
Q Consensus 70 ~e~dm~~ia~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~~ 135 (144)
.++|-+.+-++|..|++-|.. ..-+.-.++...++..+|+|++
T Consensus 64 d~eD~E~LeDLI~aAvNdA~~-----------------------k~~e~~~e~m~~~tgGm~lPGl 106 (115)
T PRK14624 64 DADDNKMLEDLVMAATNDALK-----------------------KAKEATAYEFQNASGGLDFSEI 106 (115)
T ss_pred CcccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhCCCCCCch
Confidence 567888899999888864321 1113455778888999999874
No 114
>PRK06855 aminotransferase; Validated
Probab=40.04 E-value=1.6e+02 Score=25.47 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 27 ~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
..+..+|++.||.+. |++.=.....++||+... ..+++|++..+.|.+++.
T Consensus 378 ~~~~~l~~~~gV~v~----PG~~F~~~~~~~Rls~~~-----~~~~~i~~~~~~l~~~~~ 428 (433)
T PRK06855 378 RFVYYLLASTGICVV----PLSSFCTELNGFRVTLLE-----RDEEKFEWIYQTLAEKIE 428 (433)
T ss_pred HHHHHHHHHcCEEEe----cCCcCCCCCCceEEEECC-----CcHHHHHHHHHHHHHHHH
Confidence 344567889999775 555411123579999644 357888888877777663
No 115
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=39.86 E-value=1.2e+02 Score=25.05 Aligned_cols=56 Identities=13% Similarity=0.001 Sum_probs=35.3
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 14 lvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
.+|+++. .+.....+.|.+.||.+..-.. +. +..+..+||+... .+++|++..+.|
T Consensus 307 ~~~~~~~---~~~~~~~~~l~~~gv~v~pg~~-f~--~~~~~~iRi~~~~------~~~~~~~~~~~l 362 (364)
T PRK07865 307 YLWATRG---EDCWDTVAWLAERGILVAPGDF-YG--PAGAQHVRVALTA------TDERIAAAVERL 362 (364)
T ss_pred EEEEeCC---CCHHHHHHHHHHCCEEEeCccc-cC--cCCCCEEEEEecC------CHHHHHHHHHHh
Confidence 4666652 3556777889999998874221 11 1124689999643 367887776654
No 116
>PRK05957 aspartate aminotransferase; Provisional
Probab=39.67 E-value=1.4e+02 Score=25.12 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=37.9
Q ss_pred ceeeEeccCCCCCHHHHHHHH-hhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~L-e~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
-.+|+++. .+++..++.+.| ++.||.+-. ++. .......+||+...+ .+++|++-.+.|.+++
T Consensus 319 ~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~p----g~~f~~~~~~~iRis~~~~-----~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 319 FYCFLKVN-TDLNDFELVKQLIREYRVAVIP----GTTFGMKNGCYLRIAYGAL-----QKATAKEGIERLVQGL 383 (389)
T ss_pred EEEEEeCC-CCCChHHHHHHHHHHCCEEEcc----chhhCCCCCCEEEEEEecC-----CHHHHHHHHHHHHHHH
Confidence 35677774 467777776666 578998763 332 111134699996443 3566666666555544
No 117
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=39.32 E-value=1.4e+02 Score=26.67 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=37.9
Q ss_pred eeeEeccCCCCC-------HHHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 14 LVLVNLKNKGID-------GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 14 lvlvdl~~~gi~-------g~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.+|+|++..--+ -.-++++++++||.+. |+.. .+..++.+||+... +.++++++--+.|.+++
T Consensus 366 flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~----pGs~F~~~~~g~~Ri~fa~-----~~~~~l~~al~rl~~~l 436 (496)
T PLN02376 366 FAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVS----PGSSFRCTEPGWFRICFAN-----MDDDTLHVALGRIQDFV 436 (496)
T ss_pred EEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEe----CccccCCCCCCEEEEEeeC-----CCHHHHHHHHHHHHHHH
Confidence 678998642111 2234456677899876 4443 22235679998543 44566666666666666
Q ss_pred H
Q 032257 86 K 86 (144)
Q Consensus 86 ~ 86 (144)
.
T Consensus 437 ~ 437 (496)
T PLN02376 437 S 437 (496)
T ss_pred H
Confidence 4
No 118
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=39.18 E-value=1.4e+02 Score=26.99 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCCeeeeCCCccceeeEeccCC-------CCCHH-HHHHHHhhcCceeec---c---cCCCCCCCCCC--Cceeecchhh
Q 032257 1 MGYELVSGGTENHLVLVNLKNK-------GIDGS-RVEKVLEAVHIAANK---N---TVPGDVSAMVP--GGIRMGTPAL 64 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~-------gi~g~-~~~~~Le~~gI~vnk---n---~lP~d~~~~~~--sgiRlGT~a~ 64 (144)
+|++|+. .+-.|.|+||.+.+ ...+. -+..+....||+.-- - .-|.......+ -=+|| ++
T Consensus 335 ~Gvpv~~-p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rl---ai 410 (460)
T PRK13237 335 AGVPIVE-PVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRL---TI 410 (460)
T ss_pred CCCceec-CCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeee---cc
Confidence 4888886 23339999997653 33343 455566778887641 1 11211111111 23675 56
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhh
Q 032257 65 TSRGFVEEDFAKVAYFFDAAVKLT 88 (144)
Q Consensus 65 TtRG~~e~dm~~ia~~i~~~l~~~ 88 (144)
-+|=++-+.|..||+-+..+.+..
T Consensus 411 prr~yt~~h~~~v~~~~~~~~~~~ 434 (460)
T PRK13237 411 PRRVYTYAHMDVVADSVIKLYKHR 434 (460)
T ss_pred ccccccHHHHHHHHHHHHHHHHhH
Confidence 799999999999999988877653
No 119
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=39.16 E-value=1.6e+02 Score=24.98 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=38.8
Q ss_pred CCccceeeEeccCCCCCHHHH-HHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 9 GTENHLVLVNLKNKGIDGSRV-EKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 9 gTd~Hlvlvdl~~~gi~g~~~-~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
+.-...+|+++.. +++..+. +.++++.||.+.. +.. .+.....+||+. . ..+++|++-.+.|.++
T Consensus 342 ~~g~~f~wi~~~~-~~~~~~~~~~l~~~~gv~v~p----g~~f~~~~~~~iRi~~-~-----~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 342 GVNAPYIWVKTPD-GMSSWDFFDKLLQEANVVGTP----GSGFGPSGEGYFRLSA-F-----GSRENVLEAMERIKKA 408 (409)
T ss_pred CCcceEEEEECCC-CCCHHHHHHHHHHHCCEEEeC----hhHhCCCCCCEEEEEc-c-----CCHHHHHHHHHHHHhh
Confidence 3345578999864 4565554 4556788998863 332 111235799983 2 2467777766665543
No 120
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=38.66 E-value=48 Score=28.91 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=19.6
Q ss_pred CCCCCCc-eeecchhhhhcCCCHHHHHHHHHHHHHHHHh
Q 032257 50 SAMVPGG-IRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (144)
Q Consensus 50 ~~~~~sg-iRlGT~a~TtRG~~e~dm~~ia~~i~~~l~~ 87 (144)
+|.+||| ||+= .|...+++-|...|-.
T Consensus 85 ~pl~~~~~iRvK-----------nE~~tl~~si~S~Lpa 112 (347)
T PF06306_consen 85 SPLNPWAFIRVK-----------NEAMTLAESIESILPA 112 (347)
T ss_pred CCCCcceEEEEc-----------chhhhHHHHHHHHHHH
Confidence 7889998 8986 5556677777766643
No 121
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=38.36 E-value=1.7e+02 Score=24.16 Aligned_cols=53 Identities=21% Similarity=0.168 Sum_probs=35.5
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
-.+|+++. +..++.+.|.+.||.+... .. +..+..|||+.. .++||+.+.+.+
T Consensus 297 ~f~~~~~~----~~~~~~~~l~~~gv~v~~~----~~-~~~~~~lRis~~-------~~e~~~~l~~al 349 (354)
T PRK04635 297 NYVLAKFD----DVDAVFKALWDAGIVARAY----KD-PRLANCIRFSFS-------NRAETDKLIGLI 349 (354)
T ss_pred cEEEEECC----CHHHHHHHHHHCCEEEEEC----CC-CCCCCeEEEEeC-------CHHHHHHHHHHH
Confidence 36778764 4678888999999999632 11 112356999942 468887776654
No 122
>PRK15029 arginine decarboxylase; Provisional
Probab=38.33 E-value=67 Score=30.76 Aligned_cols=55 Identities=20% Similarity=0.119 Sum_probs=39.7
Q ss_pred eeEeccCCCCCHH---------HHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHH
Q 032257 15 VLVNLKNKGIDGS---------RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 82 (144)
Q Consensus 15 vlvdl~~~gi~g~---------~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~ 82 (144)
+.|+++..|++|. .+++.|++.||.+-+...- ....|++-|-+++++..+-+-+.
T Consensus 536 lti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~~-------------~vL~l~s~g~t~~~~~~L~~aL~ 599 (755)
T PRK15029 536 VSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDF-------------QIMFLFSMGVTRGKWGTLVNTLC 599 (755)
T ss_pred EEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecCCC-------------eEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566667778887 9999999999999984211 13567777888888886655443
No 123
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=37.88 E-value=84 Score=25.70 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=46.0
Q ss_pred CceeecchhhhhcCCCHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhh-CCC
Q 032257 55 GGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQ-FPT 132 (144)
Q Consensus 55 sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~-fPi 132 (144)
+.+|+=..++|+|-.+..+...|=..|.+.|..- +......+|++.+.. ..|-.++.+.++. ||+
T Consensus 116 y~~RV~~~~~T~~ra~tSqk~aIRk~M~eii~~~------a~e~~f~~fv~~li~-------g~i~~~I~~~akkIyPL 181 (214)
T COG1890 116 YVLRVKAMAFTRRRAKTSQKRAIRKIMFEIIEEK------ASELTFEEFVQELIP-------GRIAAEIEEAAKKIYPL 181 (214)
T ss_pred cEEEEEEEEEEehhcccchHHHHHHHHHHHHHHH------hccCCHHHHHHHHhh-------hhHHHHHHHHhhhcccc
Confidence 6799999999999999999999999999998531 112334556654433 2355556666654 776
No 124
>PRK06836 aspartate aminotransferase; Provisional
Probab=37.36 E-value=1.6e+02 Score=24.86 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=40.4
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
+-.+|+++.. .+..++.+.|.+.||.+.. +..- ..+.++||+.. ..+++|.+--+.|.+++.
T Consensus 329 g~~~~~~~~~--~~~~~~~~~l~~~gv~v~~----g~~f-~~~~~iRi~~~------~~~~~~~~~i~~l~~~l~ 390 (394)
T PRK06836 329 AFYLFPKSPE--EDDVAFCEKAKKHNLLLVP----GSGF-GCPGYFRLSYC------VDTETIERSLPAFEKLAK 390 (394)
T ss_pred eEEEEEeCCC--CCHHHHHHHHHhCCEEEEC----chhc-CCCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence 3345565543 3778888889999998863 3320 02367999974 247887777777766663
No 125
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=37.29 E-value=40 Score=26.79 Aligned_cols=45 Identities=27% Similarity=0.486 Sum_probs=34.3
Q ss_pred eEecc-CCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHH
Q 032257 16 LVNLK-NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAK 76 (144)
Q Consensus 16 lvdl~-~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ 76 (144)
|-++. +.+++..+..+.|...||... -||+|. -+.+|+.-+||..
T Consensus 134 W~~~~~g~~Lt~r~La~~L~~ygI~s~--------------~ir~~~--~~~KGY~r~~f~D 179 (184)
T PF12307_consen 134 WATWNRGKPLTPRQLAKLLKEYGIRSK--------------NIRFGG--SQAKGYRREDFAD 179 (184)
T ss_pred hhhcCCCCCCCHHHHHHHHHHCCCCCC--------------ceeeCC--CCCCceeHHHHHH
Confidence 34444 678999999999999999543 378743 3689999888865
No 126
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=36.92 E-value=1.8e+02 Score=24.04 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=37.6
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
-.+|+++. +..+..+.|.+.||.+..-...+ .+..+||+.. .+++|++..+.|.+++
T Consensus 299 ~f~~~~~~----~~~~~~~~l~~~gv~v~~g~~f~-----~~~~iRls~~-------~~~~~~~~l~~L~~~l 355 (357)
T PRK14809 299 NFVLAEVG----DASAVAEAAQERGVIVRDCTSFG-----LPECIRITCG-------TREETERAVEVLNEVL 355 (357)
T ss_pred CEEEEECC----CHHHHHHHHHHCCEEEEECccCC-----CCCeEEEecC-------CHHHHHHHHHHHHHHh
Confidence 35677763 46777888999999888533221 1357999842 2577877777766554
No 127
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=36.83 E-value=1.3e+02 Score=22.80 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHHh
Q 032257 23 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 87 (144)
Q Consensus 23 gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~~ 87 (144)
|..=.=|.+.|+++|+.++....-.|- ||+= =-.+-++++|+++|+..|.+++..
T Consensus 75 GCp~~Catk~l~~AGv~~D~~l~itdl------GikK----~~~~D~~~edv~kv~~~i~e~l~~ 129 (135)
T COG4273 75 GCPLRCATKCLAEAGVQADVHLTITDL------GIKK----TYPSDCKDEDVEKVARTIKEALTI 129 (135)
T ss_pred CChHHHHHHHHHHhccceeEEEEehhc------cccc----CCCCCCCHHHHHHHHHHHHHHhhh
Confidence 556677889999999999987665553 1221 124678999999999999999865
No 128
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=36.59 E-value=16 Score=34.42 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=24.5
Q ss_pred CCCccceeeEe---ccCCCCCHHHHHHHHhhcCc
Q 032257 8 GGTENHLVLVN---LKNKGIDGSRVEKVLEAVHI 38 (144)
Q Consensus 8 ggTd~Hlvlvd---l~~~gi~g~~~~~~Le~~gI 38 (144)
=|||+|.-+|| +..+|+.|-+||..+----|
T Consensus 205 VGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpi 238 (892)
T KOG0452|consen 205 VGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPI 238 (892)
T ss_pred ccccCcceeecccceeeccccceehhhhhhcCch
Confidence 38999999999 56789999999987643333
No 129
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=36.51 E-value=1.1e+02 Score=24.83 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=29.4
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCC
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD 48 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d 48 (144)
--+++|++=.|++|.+.++.|.+.||..---.+.|-
T Consensus 50 GclllDvrMPg~sGlelq~~L~~~~~~~PVIfiTGh 85 (202)
T COG4566 50 GCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLTGH 85 (202)
T ss_pred CeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEeCC
Confidence 457899999999999999999999987665555443
No 130
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=35.76 E-value=1.5e+02 Score=24.89 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=41.7
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
..+++.+++...+.+..++.+.|.+.||.+.. .....|||..+. ..+++|++++.+.+.+++
T Consensus 338 ~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~---------~~~~~lR~~p~~----~~t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 338 RGLMLAVELEPEAGGARQYCEALKERGLLAKD---------THDHTIRLAPPL----VITREQVDWALEQIAKVL 399 (401)
T ss_pred cceEEEEEEecCchhHHHHHHHHHHCCeEEec---------CCCCEEEEeCCc----ccCHHHHHHHHHHHHHHh
Confidence 45566666644333566777888888999852 123579998643 356789988888887665
No 131
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=35.38 E-value=2e+02 Score=24.09 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=41.8
Q ss_pred cceeeEeccC-CCCCHHHHHHHHhhcCceeecccCCCCC-CCC--------CC-------CceeecchhhhhcCCCHHHH
Q 032257 12 NHLVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDV-SAM--------VP-------GGIRMGTPALTSRGFVEEDF 74 (144)
Q Consensus 12 ~Hlvlvdl~~-~gi~g~~~~~~Le~~gI~vnkn~lP~d~-~~~--------~~-------sgiRlGT~a~TtRG~~e~dm 74 (144)
.|+..+-+.. .+++..++.+.|.+.||.+.....|-.. +.+ .| ..|+|.. --.++++||
T Consensus 294 ~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~----~~~l~~~dv 369 (380)
T TIGR03588 294 WHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPL----HPALTLEQQ 369 (380)
T ss_pred EEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCC----CCCCCHHHH
Confidence 3565555533 4678999999999999988754434221 110 01 2333332 235678888
Q ss_pred HHHHHHHHHH
Q 032257 75 AKVAYFFDAA 84 (144)
Q Consensus 75 ~~ia~~i~~~ 84 (144)
+.|.+.|.++
T Consensus 370 ~~i~~~l~~~ 379 (380)
T TIGR03588 370 QRVVETLRKV 379 (380)
T ss_pred HHHHHHHHHh
Confidence 8888777654
No 132
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=35.27 E-value=96 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=22.3
Q ss_pred ecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 59 MGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 59 lGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
++..-+.++||+++++..|++.+...+.
T Consensus 194 ~n~~g~~~~~~~~~~~~~i~~a~~~~~~ 221 (262)
T PRK05289 194 LNLVGLKRRGFSREEIHALRRAYKLLYR 221 (262)
T ss_pred cchhhhhhCCCCHHHHHHHHHHHHHHHH
Confidence 4555678999999999999988766664
No 133
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=35.26 E-value=1.4e+02 Score=23.41 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=41.4
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeec--chhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG--TPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlG--T~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+.++|+.-.....++ ..+.+.+ +.++.||-..-|-......|+=++-| +.+++|-|-++.=-+.|-+-|...+
T Consensus 70 ~adlViaaT~d~elN-~~i~~~a-~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~ 144 (202)
T PRK06718 70 DAFLVIAATNDPRVN-EQVKEDL-PENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALY 144 (202)
T ss_pred CceEEEEcCCCHHHH-HHHHHHH-HhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHc
Confidence 445555533333333 3444445 55889987666655544455555555 3456788887766666665555443
No 134
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=35.00 E-value=69 Score=26.38 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=35.2
Q ss_pred CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCC----CC-CCCCCCceeecchhhhhcCC
Q 032257 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPG----DV-SAMVPGGIRMGTPALTSRGF 69 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~----d~-~~~~~sgiRlGT~a~TtRG~ 69 (144)
.|++++|.| || -+|- | ++...|+...-.+....+|. .. .-....|+|||...+|.+-+
T Consensus 57 ~G~D~iTlG--NH--~fD~------g-el~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~ 119 (255)
T cd07382 57 AGVDVITMG--NH--TWDK------K-EILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVF 119 (255)
T ss_pred cCCCEEEec--cc--ccCc------c-hHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccC
Confidence 378888887 99 4452 2 56677777643333333343 22 11133699999999986644
No 135
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=34.76 E-value=59 Score=24.74 Aligned_cols=45 Identities=33% Similarity=0.531 Sum_probs=25.9
Q ss_pred CCeeeeCCCcc----------ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCC
Q 032257 2 GYELVSGGTEN----------HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF 69 (144)
Q Consensus 2 G~~vv~ggTd~----------Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~ 69 (144)
+..+++||||- .-.+||++... |-.+|..+. .+|+|| +.+|..-+
T Consensus 23 ~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~----------eL~~I~~~~------------~~l~IG-A~vtl~~l 77 (171)
T PF00941_consen 23 DARIVAGGTDLGVQMREGILSPDVLIDLSRIP----------ELNGISEDD------------GGLRIG-AAVTLSEL 77 (171)
T ss_dssp TEEEESS-TTHHHHHHTTS---SEEEEGTTSG----------GGG-EEEET------------SEEEEE-TTSBHHHH
T ss_pred CCEEEeCCCccchhcccCccccceEEEeEEec----------ccccEEEec------------cEEEEC-CCccHHHH
Confidence 46788999973 33677775321 233555552 689999 55565444
No 136
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=34.76 E-value=69 Score=28.97 Aligned_cols=19 Identities=5% Similarity=0.095 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 032257 114 SEIAKRCHDVEEYAKQFPT 132 (144)
Q Consensus 114 ~~~~~ir~~V~~l~~~fPi 132 (144)
+.++++|+++++-..+-|+
T Consensus 432 ~~l~~lR~~Lr~~~~~SpL 450 (468)
T PF13844_consen 432 ERLRALRAKLRDRRSKSPL 450 (468)
T ss_dssp HHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 4677888888876666665
No 137
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=34.35 E-value=1.7e+02 Score=23.00 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCceeecccCCCCCCCCCCCceeecc--hhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 27 SRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT--PALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 27 ~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT--~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
..+...+.+.||.||...-|.......|+=+|-|- .+++|-|-++.=-+.|-+-|.+.+
T Consensus 84 ~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l 144 (205)
T TIGR01470 84 RRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLL 144 (205)
T ss_pred HHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhc
Confidence 46677778889999977666655444555566662 357888988877777777766655
No 138
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=34.25 E-value=1.4e+02 Score=26.28 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=47.3
Q ss_pred CCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 8 GGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 8 ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
..+++|.+-+=+.... ...+++..|.+.||.+..-.-|.=+ ..++.|||--. -..+++|+..+++.+.++
T Consensus 318 ~~s~s~I~pv~~gd~~-~a~~~s~~l~~~Gi~v~~i~~PTVp--~gtarlRi~lt----a~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 318 LPSESPIIPVILGDEE-RALEASRALLEEGIYVSAIRPPTVP--KGTARLRITLT----AAHTEEDIDRLAEALSEV 387 (388)
T ss_pred CCCCCCeeeeEeCCHH-HHHHHHHHHHHCCeeEeeecCCCCC--CCcceEEEEec----CCCCHHHHHHHHHHHHhh
Confidence 5678888866554433 3555566666669999976555544 23578999853 456789999888887653
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=34.17 E-value=58 Score=28.68 Aligned_cols=43 Identities=28% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhc-CceeecccCCCC
Q 032257 1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAV-HIAANKNTVPGD 48 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~-gI~vnkn~lP~d 48 (144)
+|-.++++|+|.-|+++++ +-++.-..||.. .-.-|+++.|+-
T Consensus 192 ~gd~i~ScGmDhslk~W~l-----~~~~f~~~lE~s~~~~~~~t~~pfp 235 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRL-----NVKEFKNKLELSITYSPNKTTRPFP 235 (385)
T ss_pred CCCeeeccCCcceEEEEec-----ChhHHhhhhhhhcccCCCCccCcCC
Confidence 3667899999999999985 556677778776 444556665544
No 140
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=33.20 E-value=78 Score=26.33 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=39.2
Q ss_pred CCccceeeEeccCC-CCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 9 GTENHLVLVNLKNK-GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 9 gTd~Hlvlvdl~~~-gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
+...|.+++++... +.+..++.+.|.+.||.+.... +..++.|||..+..+ +++|++++.+.
T Consensus 335 ~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~------~~~~~~lRis~~~~~----t~edid~~~~~ 397 (398)
T cd00613 335 GPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMY------LPVDGTLMIEPTETE----TKEELDALLEA 397 (398)
T ss_pred CCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccc------cCCCCeEEEEcCCCC----CHHHHHHHHHh
Confidence 34456677877542 4566778888888899875422 123467999765543 45777766543
No 141
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=33.00 E-value=54 Score=22.44 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCC
Q 032257 114 SEIAKRCHDVEEYAKQFPTIGF 135 (144)
Q Consensus 114 ~~~~~ir~~V~~l~~~fPi~~~ 135 (144)
..+.+||++|-+-+++||+++.
T Consensus 10 ~Tl~~iK~~lw~~A~~~PL~~~ 31 (78)
T PF02192_consen 10 ATLSEIKEELWEEAKKYPLFSL 31 (78)
T ss_dssp -BHHHHHHHHHHHGGGSTTCCC
T ss_pred CcHHHHHHHHHHHHHhCChHHH
Confidence 4678999999999999999874
No 142
>TIGR03631 bact_S13 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.
Probab=33.00 E-value=1.8e+02 Score=21.07 Aligned_cols=51 Identities=29% Similarity=0.438 Sum_probs=38.1
Q ss_pred ccceeeEeccC-CCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 11 d~Hlvlvdl~~-~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
++-.+..-|+. +||.-..|..+|+.+||.-++ | ..-++++++..|.++|..
T Consensus 9 ~~k~v~~aL~~i~GIG~~~a~~i~~~lgi~~~~---------------~-------~~~L~~~qi~~l~~~l~~ 60 (113)
T TIGR03631 9 NNKRVEIALTYIYGIGRTRARKILEKAGIDPDK---------------R-------VKDLTEEELNAIREEIEA 60 (113)
T ss_pred CCCEEeeeeeeeecccHHHHHHHHHHhCcCccc---------------c-------cccCCHHHHHHHHHHHHh
Confidence 34445555544 599999999999999986664 3 446788999999999854
No 143
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=32.98 E-value=2.6e+02 Score=23.12 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=36.4
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 14 lvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
.+|+++. +..++.+.|.+.||.+.. +. .+..|||+. +-.++|+..+.+.+.+++.
T Consensus 278 f~~~~~~----~~~~l~~~l~~~GI~vr~----~~----~~~~lRisi------~~~~~e~~~l~~al~~~~~ 332 (339)
T PRK06959 278 FSWTDDP----RAAALHAALARRGIWTRY----FA----PPPSVRFGL------PADEAEWQRLEDALAECVP 332 (339)
T ss_pred EEEEeCC----CHHHHHHHHHhCCeEEEE----CC----CCCeEEEEC------CCCHHHHHHHHHHHHHHHH
Confidence 4467753 467788888999999952 11 134799983 1234688888777766554
No 144
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=32.97 E-value=1.9e+02 Score=26.08 Aligned_cols=84 Identities=12% Similarity=0.114 Sum_probs=53.4
Q ss_pred CCCeeeeCCCccceeeEeccCC-------CCCHH-HHHHHHhhcCceeec---ccCCCCC---CCCCC--Cceeecchhh
Q 032257 1 MGYELVSGGTENHLVLVNLKNK-------GIDGS-RVEKVLEAVHIAANK---NTVPGDV---SAMVP--GGIRMGTPAL 64 (144)
Q Consensus 1 ~G~~vv~ggTd~Hlvlvdl~~~-------gi~g~-~~~~~Le~~gI~vnk---n~lP~d~---~~~~~--sgiRlGT~a~ 64 (144)
.|++|+. .+.+|+|++|++.+ ...+. -+..+....||+.-- -+.-.|+ ....+ -=+|| ++
T Consensus 328 ~Gvpv~~-p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rl---ai 403 (450)
T TIGR02618 328 AGVPIVE-PVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRL---TI 403 (450)
T ss_pred CCCcccC-CCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeee---cc
Confidence 3778864 56679999997653 33333 345556678887543 1111221 11111 23675 56
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhh
Q 032257 65 TSRGFVEEDFAKVAYFFDAAVKLT 88 (144)
Q Consensus 65 TtRG~~e~dm~~ia~~i~~~l~~~ 88 (144)
-+|=++-+.|..||+-+..+.+..
T Consensus 404 prr~yt~~h~~~v~~~~~~~~~~~ 427 (450)
T TIGR02618 404 PRRVYTYAHMDVVADGIIKLYKHR 427 (450)
T ss_pred ccccccHhHHHHHHHHHHHHHhhH
Confidence 799999999999999988877653
No 145
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=32.84 E-value=2.8e+02 Score=23.32 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=35.4
Q ss_pred eeEeccC-CCCCHHHHH-HHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 15 VLVNLKN-KGIDGSRVE-KVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 15 vlvdl~~-~gi~g~~~~-~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+|+++.. .+.+..+.. +.|++.||.+. |+.. .+.....|||+... .++++++..+.|.+++
T Consensus 323 ~~~~l~~~~~~~~~~~~~~l~~~~gv~v~----pg~~f~~~~~~~iRi~~~~------~~~~l~~~i~~l~~~~ 386 (391)
T PRK07309 323 IFAKIPAGYNQDSFKFLQDFARKKAVAFI----PGAAFGPYGEGYVRLSYAA------SMETIKEAMKRLKEYM 386 (391)
T ss_pred EEEECCCCCCCCHHHHHHHHHHhCCEEEe----CchhhCCCCCCEEEEEecC------CHHHHHHHHHHHHHHH
Confidence 4566643 223455555 56788999876 4432 22224679998542 3566666666665555
No 146
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=32.69 E-value=2e+02 Score=21.13 Aligned_cols=48 Identities=25% Similarity=0.438 Sum_probs=36.7
Q ss_pred eeeEeccC-CCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 14 LVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 14 lvlvdl~~-~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
.+.+-|.. +||.-..|..+|+++||.-|. | ..-++++|...|.++|.+
T Consensus 14 ~v~~aL~~I~GIG~~~a~~i~~~lgi~~~~---------------~-------~~~L~~~qi~~l~~~i~~ 62 (122)
T PRK05179 14 RVVIALTYIYGIGRTRAKEILAAAGIDPDT---------------R-------VKDLTDEELDKIREEIDK 62 (122)
T ss_pred EEEeeecccccccHHHHHHHHHHhCcCccc---------------c-------cccCCHHHHHHHHHHHHh
Confidence 34444444 599999999999999986663 3 446788999999999865
No 147
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=32.03 E-value=2.3e+02 Score=23.01 Aligned_cols=60 Identities=8% Similarity=-0.036 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCceeecccCCCCCCCCCCCceeec--chhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG--TPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 26 g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlG--T~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
-..+.+.+.+.++.||-..-|.......|+=+|-| +.+++|=|-++.=-+.|-+.|...+
T Consensus 99 N~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l 160 (223)
T PRK05562 99 NNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFL 160 (223)
T ss_pred HHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 35666777888999997655655444445544444 3456777888877777776666665
No 148
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=31.66 E-value=97 Score=26.11 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 24 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 24 i~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
++...+++++++.||.+.. +| ||+..+ +.+++++++++.|++++
T Consensus 353 l~~~~~~~l~~~~~V~~~p------------~~-ri~~~~-----~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 353 LTPEQVDRLREEFGVYAVG------------SG-RINVAG-----LNESNIDYVAEAIAAVL 396 (396)
T ss_pred CCHHHHHHHHHcCCEEEcC------------CC-eEEEee-----CCHHHHHHHHHHHHhhC
Confidence 4567889999999997752 23 888533 56688999998887753
No 149
>PRK09265 aminotransferase AlaT; Validated
Probab=31.34 E-value=2.5e+02 Score=23.68 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=39.7
Q ss_pred cceeeEeccCC--CC--CHHHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNK--GI--DGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 12 ~Hlvlvdl~~~--gi--~g~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+-.+|+++... +. +...+.+.|.+.||.+.. +.. ....+..+||+.. ..++++++-.+.|.+++
T Consensus 331 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~p----g~~F~~~~~~~~Ri~~~------~~~e~l~~~l~rl~~~l 399 (404)
T PRK09265 331 ALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQ----GTGFNWPEPDHFRIVTL------PRVDDLEEAIGRIGRFL 399 (404)
T ss_pred ceEEEEEecccccCCCCHHHHHHHHHHhCCEEEEC----chhhCCCCCCeEEEEeC------CCHHHHHHHHHHHHHHH
Confidence 33667776532 11 345678899999998863 322 1112456999862 45777777777766655
No 150
>PRK07681 aspartate aminotransferase; Provisional
Probab=30.61 E-value=2.5e+02 Score=23.63 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=36.7
Q ss_pred cceeeEeccCCCCCHHHHHHH-HhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~-Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
.-.+|+++.. +++..+..+. |++.||.+.. +.. .+..++.+||+.. ..++++.+..+.|.+
T Consensus 322 g~f~~~~l~~-~~~~~~~~~~l~~~~gv~v~p----g~~f~~~~~~~iRis~~------~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 322 SMFVWAEIPK-GWTSLSFAYALMDRANVVVTP----GHAFGPHGEGFVRIALV------QDEEVLQQAVENIRN 384 (399)
T ss_pred eeEEEEECCC-CCCHHHHHHHHHHhCCEEEeC----ChhhCcCCCCeEEEEec------CCHHHHHHHHHHHHH
Confidence 5578888753 5566555544 5569998863 332 1112357999864 235777666655544
No 151
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=30.38 E-value=1.3e+02 Score=28.69 Aligned_cols=47 Identities=23% Similarity=0.130 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 22 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 22 ~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
.|++|..+++.|++.||.+-+... . ....|.+-|-+++++..+-+-+
T Consensus 507 ~Gipg~~v~~~L~e~gI~~E~~d~---~----------~iLfl~s~g~t~~~~~~L~~aL 553 (714)
T PRK15400 507 FGIPASIVAKYLDEHGIVVEKTGP---Y----------NLLFLFSIGIDKTKALSLLRAL 553 (714)
T ss_pred cCCCHHHHHHHHHHcCCEEEecCC---C----------eEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999998521 1 1345667788888887655443
No 152
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=29.65 E-value=2.3e+02 Score=23.49 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=36.0
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
++...+|+++. +..++.+.|.+.||.+-..... . ..+..+||+.. +++||+.+.+.
T Consensus 294 s~~nfi~~~~~----~~~~l~~~L~~~gi~vr~~~~~---~-~~~~~iRis~~-------~~~e~~~l~~a 349 (351)
T PRK01688 294 SETNYILARFT----ASSAVFKSLWDQGIILRDQNKQ---P-GLSNCLRITIG-------TREECQRVIDA 349 (351)
T ss_pred CCCcEEEEEcC----CHHHHHHHHHHCCeEEEECCCc---C-CCCCeEEEeCC-------CHHHHHHHHHh
Confidence 45667888874 4677888888999988642111 1 11356999865 35777766544
No 153
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=29.30 E-value=2.2e+02 Score=23.90 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=41.6
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
..++++.+.. . ....+.+.|.+.||.+... .+..|||..+.. .+++|++++.+.+.+++.
T Consensus 334 g~~~~i~~~~-~-~~~~~~~~l~~~Gv~~~~~---------~~~~iR~~p~~~----~t~~~i~~~~~~l~~~l~ 393 (398)
T PRK03244 334 GLLLGIVLTA-P-VAKAVEAAAREAGFLVNAV---------APDVIRLAPPLI----ITDAQVDAFVAALPAILD 393 (398)
T ss_pred cEEEEEEEec-c-HHHHHHHHHHHCCeEEeec---------CCCEEEEECCCc----CCHHHHHHHHHHHHHHHH
Confidence 3466666642 2 4566777888899998652 125699996553 347999999998888774
No 154
>PRK07550 hypothetical protein; Provisional
Probab=29.25 E-value=2.6e+02 Score=23.26 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=38.8
Q ss_pred cceeeEeccCCCCCHHHHHHH-HhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 82 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~-Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~ 82 (144)
.-.+|+++...+++..+.... +++.||.+..-...+. ...+.+||+... ..++++++..+.|.
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~---~~~~~iRis~~~-----~~~~~~~~~~~~l~ 382 (386)
T PRK07550 319 AYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGP---GQEGYLRLAFAN-----ADVAGIGELVERLR 382 (386)
T ss_pred eEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCC---CCCCEEEEEeec-----CCHHHHHHHHHHHH
Confidence 456777765446777777665 5789998874222221 113579999642 34677777666653
No 155
>PRK08912 hypothetical protein; Provisional
Probab=29.12 E-value=2.7e+02 Score=23.23 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=38.5
Q ss_pred cceeeEeccCCC--CCHHHHHHH-HhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKG--IDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 12 ~Hlvlvdl~~~g--i~g~~~~~~-Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+..+|+++...+ .+..+..+. +++.||.+..-..-+... .....+||+... .++++++--+.|.+++
T Consensus 315 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~-~~~~~iRl~~~~------~~~~l~~~l~rl~~~l 384 (387)
T PRK08912 315 TYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEED-PVTSVVRFCFAK------RDATLDEAVERLAAAR 384 (387)
T ss_pred ceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCC-CCCCEEEEEEeC------CHHHHHHHHHHHHHHH
Confidence 566778886533 456555554 578999887422111111 123579999653 3566666666555544
No 156
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=28.89 E-value=1.5e+02 Score=28.40 Aligned_cols=48 Identities=21% Similarity=0.128 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 21 NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 21 ~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
..|++|..+++.|++.||.+-+...- ....|++-|-+++++..+-+-+
T Consensus 506 ~~Gi~g~~l~~~L~e~gI~~E~~d~~-------------~vL~l~s~g~t~~~~~~L~~aL 553 (713)
T PRK15399 506 EEGIPAALVAKFLDERGIVVEKTGPY-------------NLLFLFSIGIDKTKAMGLLRGL 553 (713)
T ss_pred cCCCCHHHHHHHHHHcCCEEEecCCC-------------eEEEEeCCCCCHHHHHHHHHHH
Confidence 45999999999999999999985221 1355677788888887665443
No 157
>PRK08637 hypothetical protein; Provisional
Probab=28.80 E-value=1.4e+02 Score=25.14 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=35.6
Q ss_pred eeeEeccCCCCCHHHHHHHH-hhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 14 LVLVNLKNKGIDGSRVEKVL-EAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 14 lvlvdl~~~gi~g~~~~~~L-e~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.+|+++. +++..++.+.| ++.||.+.. + ..+.+||+... ..++++++-.+.|.+++
T Consensus 328 ~~~~~l~--~~~~~~l~~~l~~~~gv~~~~----~-----~~~~iRi~~~~-----~~~~~i~~~~~~l~~~~ 384 (388)
T PRK08637 328 FMCLKLK--GVDAEELRVHLLEKYGIGTIA----L-----NETDLRIAFSC-----VEEEDIPELFDSIYKAI 384 (388)
T ss_pred EEEecCC--hHHHHHHHHHHhhhcceEEEe----c-----cCCceEEEeec-----CCHHHHHHHHHHHHHHH
Confidence 5566774 34555555555 678997752 1 13569998543 45788877777776666
No 158
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=28.67 E-value=1.1e+02 Score=22.81 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=37.7
Q ss_pred eeEeccC-CCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 15 VLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 15 vlvdl~~-~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+.+-|.. +||.-..+..+|+++||.-++ -...++|+|+..|.+.|.+-.
T Consensus 15 v~iALt~IyGIG~~~a~~I~~~~gi~~~~----------------------r~~eLteeei~~ir~~i~~~~ 64 (121)
T COG0099 15 VVIALTYIYGIGRRRAKEICKKAGIDPDK----------------------RVGELTEEEIERLRDAIQNKY 64 (121)
T ss_pred EeehhhhhccccHHHHHHHHHHcCCCHhH----------------------hhccCCHHHHHHHHHHHHhcC
Confidence 3444443 699999999999999986553 356889999999999987533
No 159
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=28.20 E-value=2.6e+02 Score=23.61 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=38.7
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.++.+++.. +...+.+.|.+.||.+... .+.-|||..+.. .+++|++++.+.+.+++
T Consensus 339 ~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~---------~~~~iRi~p~l~----~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 339 LFIGVELNE---PARPYCEALKEEGLLCKET---------HETVIRFAPPLV----ITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEEEEEecc---hHHHHHHHHHHCCeEEecC---------CCCEEEEECCcc----cCHHHHHHHHHHHHHHh
Confidence 456676642 4567777788889998631 124699985443 46789998888877654
No 160
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=27.89 E-value=1.8e+02 Score=25.41 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=46.9
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeec---ccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANK---NTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnk---n~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
..++...+ .|+...++...|.+.||.+-. +..|.......++.+|++-.-.+| ++|+..+.+.+.++.
T Consensus 333 ~~~vsF~v--~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt----~edid~l~~aL~~~~ 403 (405)
T COG0520 333 GGIVSFNV--KGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNT----EEDVDRLLEALKKAL 403 (405)
T ss_pred ceEEEEEe--CCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCC----HHHHHHHHHHHHHHh
Confidence 44444444 478999999999999988875 334443333344569999877776 588888887776654
No 161
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=27.79 E-value=2.9e+02 Score=23.24 Aligned_cols=55 Identities=11% Similarity=0.265 Sum_probs=40.6
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
+.-.+|+++. ++.++.+.|.+.||.|-. + +.+|||+... .+||+.+-+.+.+++.
T Consensus 300 ~~nf~~~~~~----~~~~~~~~l~~~GI~Vr~----~------~~~iRis~~~-------~~~~~~l~~al~~~~~ 354 (366)
T PRK01533 300 QTNFIFLPVE----NGGEIYEACAHAGFIIRP----F------PNGVRITVGT-------REQNEGVISVLQQHFE 354 (366)
T ss_pred cCcEEEEeCC----CHHHHHHHHHHCCcEEcc----C------CCceEEeCCC-------HHHHHHHHHHHHHHHH
Confidence 4557888873 467888999999999973 1 3579997532 3788888888877664
No 162
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=27.72 E-value=1e+02 Score=26.89 Aligned_cols=68 Identities=24% Similarity=0.253 Sum_probs=43.0
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
|+++..- +++-+|.+++....+ ..|...|+....+.+-+-.+ --+|+= |.+-.+++|..++...|
T Consensus 273 G~~~~~~-~~tN~vf~~l~~~~i------~~l~~~~~~~~~~~~~~~~~----~~vRfv----ts~a~~~edv~~~~~~~ 337 (342)
T COG2008 273 GVKLAFP-VETNMVFVRLPESAI------EALRLAGALFYRGVLIGAHG----EIVRFV----TSWATSEEDVDELVAAI 337 (342)
T ss_pred CceeccC-CcccEEEEECChHHH------HHHHhhchhheeeeeccCCC----ceEEEE----eeccCCHHHHHHHHHHH
Confidence 7777766 899999999865333 56666666665533211100 127775 56666688888877776
Q ss_pred HHH
Q 032257 82 DAA 84 (144)
Q Consensus 82 ~~~ 84 (144)
..+
T Consensus 338 ~~~ 340 (342)
T COG2008 338 KAL 340 (342)
T ss_pred HHh
Confidence 543
No 163
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=27.68 E-value=1.4e+02 Score=21.17 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 032257 72 EDFAKVAYFFDAAVKLT 88 (144)
Q Consensus 72 ~dm~~ia~~i~~~l~~~ 88 (144)
+|-+.+.++|..|+..|
T Consensus 64 ~d~e~LedlI~~A~N~A 80 (102)
T TIGR00103 64 EDKEALEDMITEALNDA 80 (102)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 57788899988888643
No 164
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=27.67 E-value=1.9e+02 Score=25.49 Aligned_cols=66 Identities=21% Similarity=0.220 Sum_probs=42.6
Q ss_pred CCeeeeCCCccceeeEeccCC---CCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCC
Q 032257 2 GYELVSGGTENHLVLVNLKNK---GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF 69 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~---gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~ 69 (144)
+|++++.+...++|...+++. +++-.++.+.|.+.|+.++....|.--.. -.-+|+=+.+-++||.
T Consensus 347 ~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~--~~~lR~~~~~~~~~~~ 415 (431)
T TIGR01788 347 PFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAED--IVVMRIVVREGFSRDL 415 (431)
T ss_pred CEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCC--eEEEEEEecCCCCHHH
Confidence 467775445667776666542 46778889999999998887665532110 1247987666666663
No 165
>PF08085 Entericidin: Entericidin EcnA/B family; InterPro: IPR012556 This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing [].; GO: 0009636 response to toxin, 0016020 membrane
Probab=27.54 E-value=45 Score=17.47 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=11.6
Q ss_pred hhcCCCHHHHHHHHHHHHH
Q 032257 65 TSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 65 TtRG~~e~dm~~ia~~i~~ 83 (144)
|.+|+++ |+...++-|.+
T Consensus 2 Tv~G~G~-Di~~~G~ai~~ 19 (21)
T PF08085_consen 2 TVRGVGK-DIQSAGEAIER 19 (21)
T ss_pred ccchhhH-hHHHHHHHHhc
Confidence 6677764 67766666544
No 166
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=27.52 E-value=2.5e+02 Score=23.08 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=36.1
Q ss_pred cceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 80 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~ 80 (144)
+-.+|+++.. +++..+..+.|.+.||.+..-...+ ...+..+||+.. -.+++|++.-+.
T Consensus 288 ~~~~~~~~~~-~~~~~~l~~~L~~~gv~v~~g~~f~---~~~~~~~Ri~~~------~~~~~~~~~l~~ 346 (350)
T TIGR03537 288 TFYLWVKVPS-GIDAKDYALRLLENGIVVAPGENFG---SGEEGYVRVALV------PTLEECEEALRL 346 (350)
T ss_pred EEEEEEECCC-CCCHHHHHHHHHHCCEEEcCchhhC---CCCCCEEEEEec------CCHHHHHHHHHH
Confidence 4467788753 5677888888888999887422111 112356999852 245666654433
No 167
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=27.17 E-value=3.5e+02 Score=22.13 Aligned_cols=59 Identities=10% Similarity=-0.043 Sum_probs=36.6
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
-.+|+.+. +..+..+.|.+.||.+-.-.. + ....+..|||+.. .+++|+.+-+.+.+++
T Consensus 273 ~f~~~~~~----~~~~~~~~l~~~gi~v~~~~~-f--~~~~~~~iRis~~-------~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 273 NFITFMIP----DAHDFYSYLLKNGILVRLLDD-Y--ECLGEQYIRIAIR-------RRSFNIKLVNALRNFL 331 (332)
T ss_pred eEEEEEcC----CHHHHHHHHHHCCeEEEECCC-C--CCCCCCEEEEEeC-------CHHHHHHHHHHHHHHh
Confidence 35777763 567777787788998874221 1 1111357999853 2467877777665543
No 168
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=27.00 E-value=2e+02 Score=23.93 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=39.9
Q ss_pred cceeeEeccCCC-------CCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKG-------IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAA 84 (144)
Q Consensus 12 ~Hlvlvdl~~~g-------i~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~ 84 (144)
.+++++.+.... .....+.+.|.+.||.+.... +..+||..+. ..+++|+.+..+.+.++
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~---------~~~lR~~~~~----~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 346 GLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG---------GNVIRLLPPL----IITEEEIDEGLDALDEA 412 (413)
T ss_pred ceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC---------CCEEEEECCC----cCCHHHHHHHHHHHHHh
Confidence 466666664321 346677788888899887532 3468988543 35778888888777654
No 169
>PRK14628 hypothetical protein; Provisional
Probab=26.34 E-value=1.8e+02 Score=21.37 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCC
Q 032257 73 DFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIG 134 (144)
Q Consensus 73 dm~~ia~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~ 134 (144)
|.+.+-++|..|+.-|.. ..-+...++...++..+|+|+
T Consensus 78 D~E~LeDLIiaA~NdA~~-----------------------ka~~~~~~~m~~~tggm~lPG 116 (118)
T PRK14628 78 DFETLKDLLIAGMNEVME-----------------------KIEKRREEEMSKITQQFGIPG 116 (118)
T ss_pred CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhCCCCCCC
Confidence 888899999888864321 111234567778889999987
No 170
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=26.29 E-value=1e+02 Score=26.44 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=23.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 032257 65 TSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (144)
Q Consensus 65 TtRG~~e~dm~~ia~~i~~~l~~~~~~ 91 (144)
+-|.|+++|+++|-+-..++...|++.
T Consensus 145 ~p~~mt~~eI~~ii~~f~~AA~rA~~A 171 (362)
T PRK10605 145 TPRALELEEIPGIVNDFRQAIANAREA 171 (362)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 568999999999999988888877664
No 171
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=26.17 E-value=2.5e+02 Score=24.58 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=40.3
Q ss_pred ceeeEeccCC---C-CC-H-HHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNK---G-ID-G-SRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~---g-i~-g-~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
=.+|+|++.. . .. . .-++++|+++||.+. ||.. .+..++-+||.... +.++++++--+.|.+++
T Consensus 365 ~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~----pG~~f~~~~~g~fRi~fa~-----~~~~~l~~gl~Ri~~~l 435 (447)
T PLN02607 365 LFCWMNLSPLLETPTREGELALWDSILREVKLNIS----PGSSCHCSEPGWFRVCFAN-----MSEDTLEVALKRIHRFM 435 (447)
T ss_pred EEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEc----CccccCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHH
Confidence 3678898642 0 01 1 224467788999876 5554 33346789998543 45677777777777766
Q ss_pred H
Q 032257 86 K 86 (144)
Q Consensus 86 ~ 86 (144)
.
T Consensus 436 ~ 436 (447)
T PLN02607 436 D 436 (447)
T ss_pred H
Confidence 4
No 172
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=25.77 E-value=2.2e+02 Score=23.97 Aligned_cols=59 Identities=7% Similarity=-0.094 Sum_probs=34.9
Q ss_pred eeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceee--cchhhhhcCCCHHHHHHHHHHHH
Q 032257 14 LVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRM--GTPALTSRGFVEEDFAKVAYFFD 82 (144)
Q Consensus 14 lvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRl--GT~a~TtRG~~e~dm~~ia~~i~ 82 (144)
.+++++...+ +...+.+.|++.||.+.. +..-+..+.-+|| |+++-++ .+|+.+.+.|.
T Consensus 282 f~~~~~~~~~-~~~~~~~ll~~~gV~v~~----~~~f~~~~~~vRis~~~~~~~~-----~~~~~~~~al~ 342 (346)
T TIGR03576 282 FVIKGVEEEK-LIEIGLDLLRNYGIITIT----AVGMPGASKTLRFDLAAKDAER-----IGDDYLVEAVK 342 (346)
T ss_pred EEEEeCCCCC-HHHHHHHHHHhCCEEEeC----CcccCCCCCeEEEEEecChHHh-----cCHHHHHHHHH
Confidence 7888876421 347888999999998883 2210111345888 4443332 25666655543
No 173
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=25.71 E-value=3.7e+02 Score=22.48 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=35.1
Q ss_pred ceeeEeccCCCCCHHHH-HHHHhhcCceeecccCCCC---CCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRV-EKVLEAVHIAANKNTVPGD---VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~-~~~Le~~gI~vnkn~lP~d---~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
=.+|+++. ++..+. .++|++.||.+..-...+. .....++.+||+... .++++++..+.|.+++
T Consensus 327 ~f~~~~~~---~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~------~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 327 FYLWAKVP---GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA------PLAECVEAAERIVDFC 394 (396)
T ss_pred EEEEEECC---CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC------CHHHHHHHHHHHHHHh
Confidence 35678875 345555 5556789998864222111 111224679998542 2566666555554443
No 174
>PF08236 SRI: SRI (Set2 Rpb1 interacting) domain; InterPro: IPR013257 The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilises the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. ; GO: 0018024 histone-lysine N-methyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0034968 histone lysine methylation, 0005694 chromosome; PDB: 2A7O_A 2C5Z_A.
Probab=25.63 E-value=1.5e+02 Score=20.32 Aligned_cols=18 Identities=17% Similarity=0.312 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 032257 69 FVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 69 ~~e~dm~~ia~~i~~~l~ 86 (144)
++.+||..+|.-|...|.
T Consensus 28 ~~~ddfK~~ar~lt~~l~ 45 (88)
T PF08236_consen 28 LSKDDFKHLARKLTHKLV 45 (88)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 778999999988877774
No 175
>PLN02483 serine palmitoyltransferase
Probab=25.45 E-value=3.1e+02 Score=24.38 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=45.0
Q ss_pred CCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHH
Q 032257 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF 81 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i 81 (144)
|+.+. +..++..+.+=+-.. ....++.+.|.+.||.+.....|. .|...+.+||...+.. +++|+++..+.|
T Consensus 389 G~~v~-~~~~sp~~~l~l~~~-~~~~~~~~~Ll~~GI~v~~~~fp~--~p~~~~~vRi~isa~~----t~edId~~l~~L 460 (489)
T PLN02483 389 GFEVL-GDNDSPVMPIMLYNP-AKIPAFSRECLKQNVAVVVVGFPA--TPLLLARARICISASH----SREDLIKALEVI 460 (489)
T ss_pred CCccc-CCCCCCEEEEEECCH-HHHHHHHHHHHHCCcEEeeeCCCC--CCCCCceEEEEeCCCC----CHHHHHHHHHHH
Confidence 45443 334455554432211 133456666677899998533332 2233467999865543 478999888888
Q ss_pred HHHHH
Q 032257 82 DAAVK 86 (144)
Q Consensus 82 ~~~l~ 86 (144)
.+++.
T Consensus 461 ~~~~~ 465 (489)
T PLN02483 461 SEVGD 465 (489)
T ss_pred HHHHH
Confidence 88764
No 176
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=25.31 E-value=3.3e+02 Score=22.54 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=37.9
Q ss_pred ceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 13 HLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 13 Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
-++++.+ ..+.....+.|.+.||.+... . +..|||..+. ..+++|+++..+.|.+++.
T Consensus 336 ~~~~i~~---~~~~~~~~~~l~~~Gv~v~~~----~-----~~~lRi~~~~----~~~~~~i~~~~~~l~~~l~ 393 (396)
T PRK02627 336 LMIGIEL---DRPAAEIVKKALEKGLLINVT----G-----DNVLRLLPPL----IISKEEIDEAVDRLEEVLK 393 (396)
T ss_pred EEEEEEe---cCcHHHHHHHHHHCCeEEeec----C-----CCEEEEECCc----ccCHHHHHHHHHHHHHHHH
Confidence 3566665 235666767777779998641 1 2459997432 2468999988888877763
No 177
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=24.89 E-value=2.7e+02 Score=23.40 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=41.1
Q ss_pred ccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCC-CCCC---------CCceeecchhh---hhcCCCHHHHHHH
Q 032257 11 ENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMV---------PGGIRMGTPAL---TSRGFVEEDFAKV 77 (144)
Q Consensus 11 d~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~-~~~~---------~sgiRlGT~a~---TtRG~~e~dm~~i 77 (144)
..|++++-+.. +.+..++.+.|.+.||.+...-.|--. +.+. |..-++..-.+ .--+++++||+.|
T Consensus 288 ~~~~~~~~~~~-~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i 366 (375)
T PRK11706 288 NAHMFYIKLRD-LEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTV 366 (375)
T ss_pred eeEEEEEEECC-cCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHH
Confidence 36677776643 457899999999999987643333221 1111 01111111111 1235778888888
Q ss_pred HHHHHHH
Q 032257 78 AYFFDAA 84 (144)
Q Consensus 78 a~~i~~~ 84 (144)
.+.|.++
T Consensus 367 ~~~i~~~ 373 (375)
T PRK11706 367 IDTILEF 373 (375)
T ss_pred HHHHHHH
Confidence 7776654
No 178
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=24.88 E-value=3.6e+02 Score=22.37 Aligned_cols=45 Identities=13% Similarity=0.255 Sum_probs=27.6
Q ss_pred cceeeEeccCCCCCHHHHHH-HHhhcCceeecccCCCCC-CCCCCCceeecc
Q 032257 12 NHLVLVNLKNKGIDGSRVEK-VLEAVHIAANKNTVPGDV-SAMVPGGIRMGT 61 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~-~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT 61 (144)
+-.+|+++.. +++..+..+ +|++.||.+.. +.. ....+..+||+.
T Consensus 322 ~~~~~v~~~~-~~~~~~l~~~ll~~~gi~v~~----g~~f~~~~~~~~Ris~ 368 (385)
T PRK09276 322 TFYVWAPVPK-GYTSAEFATLLLDKAGVVVTP----GNGFGEYGEGYFRIAL 368 (385)
T ss_pred ceEEEEECCC-CCCHHHHHHHHHHhCCEEECC----chhhCCCCCCeEEEEe
Confidence 4457888753 566776555 45788998863 332 111235799985
No 179
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=24.65 E-value=1.5e+02 Score=22.70 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=36.9
Q ss_pred eeeEeccC-CCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHH
Q 032257 14 LVLVNLKN-KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDA 83 (144)
Q Consensus 14 lvlvdl~~-~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~ 83 (144)
.+.+-|+. +||.-..|..+|+.+||..++ | ..-++++++..|.++|.+
T Consensus 22 ~i~~aLt~IyGIG~~~a~~Ic~~lgi~~~~---------------~-------~~~Lt~~qi~~l~~~i~~ 70 (149)
T PRK04053 22 PVEYALTGIKGIGRRTARAIARKLGLDPNA---------------K-------LGYLSDEEIEKIEEALED 70 (149)
T ss_pred EEeeeccccccccHHHHHHHHHHcCcCCCC---------------c-------cCcCCHHHHHHHHHHHHh
Confidence 34444444 599999999999999987664 3 345789999999999865
No 180
>PRK08363 alanine aminotransferase; Validated
Probab=24.50 E-value=3.9e+02 Score=22.37 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=36.8
Q ss_pred cceeeEeccCCC-CCH-HHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 12 NHLVLVNLKNKG-IDG-SRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 12 ~Hlvlvdl~~~g-i~g-~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
+..+|+.+.... .+. ..+.+.|.+.||.+.. +.. ....+..+||... -.++++++-.+.|.+++
T Consensus 326 ~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~----g~~f~~~~~~~iRis~~------~~~~~l~~~l~~l~~~~ 392 (398)
T PRK08363 326 AFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVH----GSGFGEYGAGHFRLVFL------PPVEILEEAMDRFEEFM 392 (398)
T ss_pred EEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeC----chhhCCCCCCeEEEEec------CCHHHHHHHHHHHHHHH
Confidence 444555665421 233 4457788999998863 332 1122357999853 23677776666665544
No 181
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=24.48 E-value=1e+02 Score=21.94 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.8
Q ss_pred eeeEeccC--C----CCCHHHHHHHHhhcCce
Q 032257 14 LVLVNLKN--K----GIDGSRVEKVLEAVHIA 39 (144)
Q Consensus 14 lvlvdl~~--~----gi~g~~~~~~Le~~gI~ 39 (144)
-+|||+|. . |++...++..|+++||.
T Consensus 15 ~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~ 46 (122)
T PF04343_consen 15 RVLVDVRLWPRSRKPGFNKEDLASFLEEAGIE 46 (122)
T ss_pred eEEEEECCCCCCCCCCCCHHHHHHHHHHCCce
Confidence 37899764 4 77999999999999986
No 182
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=24.42 E-value=1.5e+02 Score=25.14 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=43.0
Q ss_pred ceeeEeccC--CCCCHHHHHHHHhhcCceeecccCCCCC-CCC--------CCCceeecchhhh---hcCCCHHHHHHHH
Q 032257 13 HLVLVNLKN--KGIDGSRVEKVLEAVHIAANKNTVPGDV-SAM--------VPGGIRMGTPALT---SRGFVEEDFAKVA 78 (144)
Q Consensus 13 Hlvlvdl~~--~gi~g~~~~~~Le~~gI~vnkn~lP~d~-~~~--------~~sgiRlGT~a~T---tRG~~e~dm~~ia 78 (144)
|++.+-+.. .+++..++.+.|.+.||-+..-..|--. +.+ -|..-++.--.++ --+++++|+..|+
T Consensus 291 ~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~ 370 (379)
T PRK11658 291 HLFIIRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVI 370 (379)
T ss_pred EEEEEEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHH
Confidence 665554432 4678899999999999987643333221 111 1112222222233 4578889998888
Q ss_pred HHHHHHH
Q 032257 79 YFFDAAV 85 (144)
Q Consensus 79 ~~i~~~l 85 (144)
+.|.+++
T Consensus 371 ~~i~~~~ 377 (379)
T PRK11658 371 TALQQIA 377 (379)
T ss_pred HHHHHHH
Confidence 8877654
No 183
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=23.73 E-value=2.9e+02 Score=23.62 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=39.7
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCc----eeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHI----AANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI----~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
||||+=+=... | .+.+|.+...++|= .+|+ | |.....++.+.+|+..+=++-.+.+
T Consensus 8 ~DnH~H~np~~--g-g~~ea~~~F~rAGGt~~il~nl---p--------------s~~~g~~~~~~edy~r~yd~~lr~v 67 (285)
T COG1831 8 TDNHFHLNPKN--G-GALEAARRFHRAGGTHLILVNL---P--------------SWSYGIAPTGGEDYRRLYDIHLRLV 67 (285)
T ss_pred ecceeeecCCc--C-cHHHHHHHHHHcCCcEEEEeec---c--------------cccccCCCCcHHHHHHHHHHHHHHH
Confidence 89997654432 4 68999999999983 3443 1 2334466777888888777766655
Q ss_pred Hhh
Q 032257 86 KLT 88 (144)
Q Consensus 86 ~~~ 88 (144)
..+
T Consensus 68 e~~ 70 (285)
T COG1831 68 EKI 70 (285)
T ss_pred HHH
Confidence 544
No 184
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=23.73 E-value=62 Score=17.45 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=12.8
Q ss_pred CCeeeeCCCccceeeEe
Q 032257 2 GYELVSGGTENHLVLVN 18 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvd 18 (144)
+-.+++++.|..+.++|
T Consensus 23 ~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 23 GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEETTSEEEEEE
T ss_pred cccceeeCCCCEEEEEC
Confidence 34578888998888775
No 185
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=23.58 E-value=95 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHhhcCceeecccCCCCC
Q 032257 21 NKGIDGSRVEKVLEAVHIAANKNTVPGDV 49 (144)
Q Consensus 21 ~~gi~g~~~~~~Le~~gI~vnkn~lP~d~ 49 (144)
..|++..++++++++.| .|.+|..+
T Consensus 18 ~~GLs~~ev~~r~~~~G----~N~l~~~~ 42 (69)
T PF00690_consen 18 SQGLSSEEVEERRKKYG----PNELPEPK 42 (69)
T ss_dssp SSBBTHHHHHHHHHHHS----SSSTTTTT
T ss_pred CCCCCHHHHHHHHHhcc----cccccccc
Confidence 56999999999999999 68887654
No 186
>PRK14626 hypothetical protein; Provisional
Probab=23.55 E-value=2.7e+02 Score=20.08 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 032257 70 VEEDFAKVAYFFDAAVKLT 88 (144)
Q Consensus 70 ~e~dm~~ia~~i~~~l~~~ 88 (144)
.++|.+.+-++|..|+..|
T Consensus 63 ~~ed~e~LeDLI~aA~N~A 81 (110)
T PRK14626 63 NEDEYEVLKDLLIAAFNEA 81 (110)
T ss_pred CcccHHHHHHHHHHHHHHH
Confidence 4578888999998888654
No 187
>PRK14623 hypothetical protein; Provisional
Probab=23.31 E-value=2.3e+02 Score=20.46 Aligned_cols=41 Identities=10% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHH-hhCC-CCCCc
Q 032257 73 DFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYA-KQFP-TIGFE 136 (144)
Q Consensus 73 dm~~ia~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~-~~fP-i~~~~ 136 (144)
|-+.+.++|..|+..|.+ ..-+.-.++...++ ..+| +|++.
T Consensus 60 D~E~LeDLI~aAvn~A~~-----------------------k~~~~~~~~m~~~t~~g~~~~PG~~ 102 (106)
T PRK14623 60 DKEQLEDYLVLTLNKAIE-----------------------KATEINEAELGAVAKEGMPDIPGMD 102 (106)
T ss_pred CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhcCCCCCCCch
Confidence 788899999888864322 11133556777788 4888 78874
No 188
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=23.26 E-value=1.5e+02 Score=25.81 Aligned_cols=49 Identities=24% Similarity=0.225 Sum_probs=39.0
Q ss_pred ccCCCCCCCCCCCceeecch-hhhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 032257 43 NTVPGDVSAMVPGGIRMGTP-ALTSRGFVEEDFAKVAYFFDAAVKLTVKI 91 (144)
Q Consensus 43 n~lP~d~~~~~~sgiRlGT~-a~TtRG~~e~dm~~ia~~i~~~l~~~~~~ 91 (144)
+..|++.++..||.++.-.. ..|-|-|+++|+++|-+...+|...|++.
T Consensus 112 ~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~A 161 (363)
T COG1902 112 ASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEA 161 (363)
T ss_pred ccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 34555556677788887774 78899999999999999999998887765
No 189
>PRK04335 cell division protein ZipA; Provisional
Probab=23.26 E-value=4.8e+02 Score=22.47 Aligned_cols=33 Identities=9% Similarity=0.281 Sum_probs=25.3
Q ss_pred ceeeEecc---CCCCCHHHHHHHHhhcCceeecccC
Q 032257 13 HLVLVNLK---NKGIDGSRVEKVLEAVHIAANKNTV 45 (144)
Q Consensus 13 Hlvlvdl~---~~gi~g~~~~~~Le~~gI~vnkn~l 45 (144)
..+.+++. +..++|......|+++|...-...|
T Consensus 176 ~vivlnV~a~~~~~f~G~~L~~~le~~Gl~~Gem~I 211 (313)
T PRK04335 176 DVIVLNVHCAGNEPFVGTKLFDSMQQNGLIFGEMDI 211 (313)
T ss_pred cEEEEEEEeCCCCcccHHHHHHHHHHcCCEecCCCc
Confidence 35666663 3568999999999999998876544
No 190
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=23.20 E-value=1.8e+02 Score=18.38 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCC-HHHHHHHHHHHHH
Q 032257 26 GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFV-EEDFAKVAYFFDA 83 (144)
Q Consensus 26 g~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~-e~dm~~ia~~i~~ 83 (144)
...+.+.|++.|+.+....-|.+. ......=|-++-. .-+. +++++++.+|+.+
T Consensus 7 ~~a~~~~L~~~g~~v~~~~~~~~~l~~~~~tll~i~~~----~~~~~~~~~~~l~~~v~~ 62 (70)
T PF14258_consen 7 TYALYQLLEEQGVKVERWRKPYEALEADDGTLLVIGPD----LRLSEPEEAEALLEWVEA 62 (70)
T ss_pred HHHHHHHHHHCCCeeEEecccHHHhCCCCCEEEEEeCC----CCCCchHHHHHHHHHHHc
Confidence 567889999999999977777765 2222223566643 2355 4899999888653
No 191
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=23.07 E-value=3.7e+02 Score=20.93 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=33.4
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhh
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTS 66 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~Tt 66 (144)
.|.++++|.+-..+ .-..+++++..+++-+|.. .. ..-|||-.|.+|.
T Consensus 51 ~~~~~l~I~p~D~~-~~~~I~kAI~~s~lglnP~----~d----g~~Iri~iP~lT~ 98 (176)
T TIGR00496 51 PDARTLVIQPFDKS-NINAIEKAIQRSDLGLNPN----ND----GSVIRVNFPPLTE 98 (176)
T ss_pred CCCCEEEEecCChh-hHHHHHHHHHHCCCCCCcc----cC----CCEEEecCCCCCH
Confidence 36677777654434 5678899999999866642 11 1359999999984
No 192
>PRK09082 methionine aminotransferase; Validated
Probab=23.03 E-value=3.4e+02 Score=22.71 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=30.7
Q ss_pred cceeeEeccC-CCCCHHHHHHH-HhhcCceeecccCCCCCCCCCCCceeecch
Q 032257 12 NHLVLVNLKN-KGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTP 62 (144)
Q Consensus 12 ~Hlvlvdl~~-~gi~g~~~~~~-Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~ 62 (144)
+..+|+++.. .+++..++.+. +++.||.+..-..-+ ..+.....+||+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~-~~~~~~~~~Ri~~~ 370 (386)
T PRK09082 319 TYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFY-ADPFPHRLVRLCFA 370 (386)
T ss_pred eEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhC-CCCCCCCEEEEEec
Confidence 4567788864 35677777665 589999987422111 11222346999963
No 193
>PRK10949 protease 4; Provisional
Probab=23.00 E-value=1.9e+02 Score=27.03 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecc-----hhhhhcCCCHHHHHHHHHHHHHHHHh
Q 032257 23 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT-----PALTSRGFVEEDFAKVAYFFDAAVKL 87 (144)
Q Consensus 23 gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT-----~a~TtRG~~e~dm~~ia~~i~~~l~~ 87 (144)
.....-...+|++.||.+.. +|.|+ -..|++.|++++-+.+-.|+.+.-..
T Consensus 183 ~~~~~~~k~lLdKlGV~~~v--------------~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~ 238 (618)
T PRK10949 183 ATNGLYYKSLLDKLKVSTHV--------------FRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQN 238 (618)
T ss_pred ecchhhHHHHHHHcCCeEEE--------------EEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 33455678999999999985 45544 25678999999988888888776543
No 194
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=22.98 E-value=2.6e+02 Score=24.61 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=38.7
Q ss_pred eeeEeccCCCCCH-------HHHHHHHhhcCceeecccCCCCC-CCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHH
Q 032257 14 LVLVNLKNKGIDG-------SRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85 (144)
Q Consensus 14 lvlvdl~~~gi~g-------~~~~~~Le~~gI~vnkn~lP~d~-~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l 85 (144)
.+|+++... ++. ..++++|+++||.+. |+.. ....+..+||+... ..++++++..+.|.+++
T Consensus 359 flwi~l~~~-~~~~~~~~~~~l~~~ll~~~gV~v~----PG~~f~~~~~g~~Rl~f~~-----~~~~~l~~~l~ri~~~l 428 (468)
T PLN02450 359 FCWVDMRHL-LKSNTFEAEMELWKKIVYEVKLNIS----PGSSCHCTEPGWFRVCFAN-----MSEETLDLAMKRLKSFV 428 (468)
T ss_pred EEEEEchHh-cCcCCchHHHHHHHHHHHhCCEEEe----CccccCCCCCCEEEEEecC-----CCHHHHHHHHHHHHHHH
Confidence 667887531 121 234556788999886 4543 22235679998554 34577777777776666
Q ss_pred H
Q 032257 86 K 86 (144)
Q Consensus 86 ~ 86 (144)
.
T Consensus 429 ~ 429 (468)
T PLN02450 429 E 429 (468)
T ss_pred H
Confidence 4
No 195
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=22.62 E-value=4.1e+02 Score=22.50 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=40.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhh-hhhhhhcccchhhhHHhhhcccccHHHHHHHHHHHHHHHhhCCCCCCcccccc
Q 032257 64 LTSRGFVEEDFAKVAYFFDAAVKLT-VKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETMK 141 (144)
Q Consensus 64 ~TtRG~~e~dm~~ia~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~V~~l~~~fPi~~~~~~~~~ 141 (144)
++.+..+.+|+.++++.+.+-+... .++...-.+ .+ ... ....+..+++++-...+..+||...+...+.|
T Consensus 90 l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~----~~--~~~-~~~~~i~~~~~~~y~~l~~~~p~l~~~~~~~K 161 (318)
T PF12725_consen 90 LETEEYSTEELKELTEYLIEKANELREQITEDDNG----VV--DIP-YDKEEIFEEAREGYENLAERYPFLSGYYPSPK 161 (318)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccc----cc--cCC-CCHHHHHHHHHHHHHHHHHhCCccCCCCCCCc
Confidence 4567788999999998876655432 112110000 00 000 00123456788899999999999654444444
No 196
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=22.34 E-value=4.5e+02 Score=21.75 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=29.4
Q ss_pred cceeeEeccCCCCCHHHHHHH-HhhcCceeecccCCCCCCCCCCCceeecch
Q 032257 12 NHLVLVNLKNKGIDGSRVEKV-LEAVHIAANKNTVPGDVSAMVPGGIRMGTP 62 (144)
Q Consensus 12 ~Hlvlvdl~~~gi~g~~~~~~-Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~ 62 (144)
+-.+|+++.. +++..+..+. |++.||.+-.-..- ....+..+||+..
T Consensus 320 ~~~~~~~l~~-~~~~~~~~~~ll~~~gi~v~~g~~f---~~~~~~~~Ris~~ 367 (383)
T TIGR03540 320 TFYVWVPVPE-GYTSAEFAARLLEETGVVVTPGVGF---GEYGEGYIRISLT 367 (383)
T ss_pred ceEEEEECCC-CCCHHHHHHHHHHHCCEEEecchhh---CccCCCeEEEEec
Confidence 4557888753 6777776665 57899988742211 1111346999964
No 197
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=22.33 E-value=2.2e+02 Score=18.63 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=31.4
Q ss_pred ceeeEeccCCCC---CHHHHHHHHhhcCce-eecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHH
Q 032257 13 HLVLVNLKNKGI---DGSRVEKVLEAVHIA-ANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 79 (144)
Q Consensus 13 Hlvlvdl~~~gi---~g~~~~~~Le~~gI~-vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~ 79 (144)
|.|-|-+++ |+ .|..+.+.|...|+. ++ .+|.| -.++..|.++++.+.+|+
T Consensus 3 ~~v~V~~k~-gv~Dp~G~ti~~~l~~lg~~~v~--------------~Vr~~-k~~~l~~~~~~~~~~i~~ 57 (73)
T PRK06423 3 FKVEVTYKP-GVEDPEALTILKNLNILGYNGIK--------------GVSIS-KVYYFDADSYNEVDEIAG 57 (73)
T ss_pred EEEEEEECC-CCcChHHHHHHHHHHHcCCCCcc--------------eEEEE-EEEEEecCCHHHHHHHHH
Confidence 345555554 33 678888888887753 22 26666 334446677777777665
No 198
>PRK07505 hypothetical protein; Provisional
Probab=21.97 E-value=2.8e+02 Score=23.39 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHHHHHHHH
Q 032257 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 86 (144)
Q Consensus 26 g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~i~~~l~ 86 (144)
..++.+.|.+.||.+.....|.-+ .....|||..+.. .+++|+.++.+.|.+++.
T Consensus 344 ~~~~~~~l~~~Gi~v~~~~~p~~~--~~~~~lRi~~~~~----~t~eei~~~~~~l~~~l~ 398 (402)
T PRK07505 344 AIKAAKQLLDRGFYTSPVFFPVVA--KGRAGLRIMFRAS----HTNDEIKRLCSLLKEILD 398 (402)
T ss_pred HHHHHHHHHHCCCeEeeecCCCCC--CCCceEEEecCcc----CCHHHHHHHHHHHHHHHH
Confidence 456677777889999754333211 1225799986543 356999999998888774
No 199
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=21.05 E-value=75 Score=28.21 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=17.5
Q ss_pred CCeeeeCCCccceeeEeccC
Q 032257 2 GYELVSGGTENHLVLVNLKN 21 (144)
Q Consensus 2 G~~vv~ggTd~Hlvlvdl~~ 21 (144)
++.++++|-|+|+.+||+++
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred CceeeecCCCCcEEEEeccc
Confidence 56789999999999999874
No 200
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=20.75 E-value=65 Score=15.18 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=7.6
Q ss_pred eeeCCCccceeeE
Q 032257 5 LVSGGTENHLVLV 17 (144)
Q Consensus 5 vv~ggTd~Hlvlv 17 (144)
+++++.|+++.++
T Consensus 27 ~~~~~~d~~~~~~ 39 (40)
T smart00320 27 LASASDDGTIKLW 39 (40)
T ss_pred EEEecCCCeEEEc
Confidence 4556666665544
No 201
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=20.28 E-value=3.2e+02 Score=22.60 Aligned_cols=60 Identities=28% Similarity=0.270 Sum_probs=38.3
Q ss_pred CccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCC----CCCCCCCceeecchhhhhcCCCHHHHHH
Q 032257 10 TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD----VSAMVPGGIRMGTPALTSRGFVEEDFAK 76 (144)
Q Consensus 10 Td~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d----~~~~~~sgiRlGT~a~TtRG~~e~dm~~ 76 (144)
.-+.++.+.+ .++++..+.+.|++.||.+.. ..-.. ......++||++....++ ++|+++
T Consensus 307 ~~~~i~~~~~--~~~~~~~~~~~L~~~~I~~~~-G~~~~~~~~~~~~~~~~iRvS~~~~nt----~~dv~~ 370 (371)
T PF00266_consen 307 RRPSIVSFNL--PGSDADDVVKYLEERGIAVST-GSACAGPSLDILGMGGVIRVSLHYYNT----EEDVDR 370 (371)
T ss_dssp BGTTEEEEEE--TTSSHHHHHHHHHHHTEEEEE-STTTCHHHHHHHHTTTEEEEE-GTTSS----HHHHHH
T ss_pred cccceEEEee--cCCCHHHHHHHHhhcCEEEec-cCcccHHHHHHhCCCCEEEEeccCCCC----HHHHhh
Confidence 4456777777 478899999999999999886 11000 000012689999877776 455543
Done!