RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032257
(144 letters)
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism;
HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP:
c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A*
1bj4_A* 1eji_A*
Length = 483
Score = 191 bits (488), Expect = 4e-60
Identities = 67/137 (48%), Positives = 91/137 (66%), Gaps = 2/137 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY++V+GG++NHL+LV+L++KG DG R EKVLEA IA NKNT PGD SA+ P G+R+GT
Sbjct: 345 GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGT 404
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET-QGTKLKDFVATTQS-ANFQSEIAKR 119
PALTSRG +E+DF KVA+F ++LTV+I+ +T LK+F Q +
Sbjct: 405 PALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRAL 464
Query: 120 CHDVEEYAKQFPTIGFE 136
+VE +A FP G
Sbjct: 465 RQEVESFAALFPLPGLP 481
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural
genomics consortium, SGC; 2.04A {Homo sapiens} SCOP:
c.67.1.4 PDB: 3ou5_A
Length = 490
Score = 190 bits (484), Expect = 2e-59
Identities = 70/137 (51%), Positives = 96/137 (70%), Gaps = 3/137 (2%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
GY LVSGGT+NHLVLV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G
Sbjct: 355 GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGA 414
Query: 62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATT-QSANFQSEIAKRC 120
PALTSR F E+DF +V F D V + +++KS+T KL+DF + + + +A
Sbjct: 415 PALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDSETSQRLANLR 472
Query: 121 HDVEEYAKQFPTIGFEK 137
VE++A+ FP GF++
Sbjct: 473 QRVEQFARAFPMPGFDE 489
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural
genomics; HET: PLP; 1.15A {Thermus thermophilus}
Length = 407
Score = 120 bits (303), Expect = 1e-33
Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
GY +V+GGT+NHL LV+L+ KG+ G E+ L+AV I NKN +P D V GIR+G
Sbjct: 301 GYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIG 360
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA+T+RGF E+ VA D A+
Sbjct: 361 TPAITTRGFTPEEMPLVAELIDRALL 386
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory,
pyridoxal phosphate, one-carbon metabolism,
PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus
stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A*
1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A*
2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A*
2vgv_A* 2vgw_A* ...
Length = 405
Score = 119 bits (301), Expect = 2e-33
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G+ LVSGGT+NHL+LV+L+ + + G EKVL+ V I NKNT+P D S V GIR+G
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
T A+T+RGF E+ ++A +K
Sbjct: 360 TAAVTTRGFGLEEMDEIAAIIGLVLK 385
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon
metabolism, pyridoxal phosphate, structural genomics;
HET: LLP; 1.50A {Mycobacterium tuberculosis}
Length = 447
Score = 119 bits (301), Expect = 4e-33
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G +VSGGT+ HLVLV+L++ +DG E +L V I N+N VP D MV G+R+G
Sbjct: 327 GVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIG 386
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPAL +RGF + +F +VA A+
Sbjct: 387 TPALATRGFGDTEFTEVADIIATALA 412
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011,
serine hydroxymethyltransfera salmonella typhimurium.;
HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A*
3g8m_A* 1eqb_A*
Length = 420
Score = 118 bits (299), Expect = 5e-33
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
GY++VSGGTENHL L++L +K + G + L +I NKN+VP D S V GIR+G
Sbjct: 309 GYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIG 368
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
+PA+T RGF E + ++A + +
Sbjct: 369 SPAVTRRGFKEAEVKELAGWMCDVLD 394
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA)
sandwich, CSGI transferase, structural genomics; HET:
MSE; 1.80A {Campylobacter jejuni}
Length = 417
Score = 118 bits (298), Expect = 8e-33
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
++LVS GT+NHLVL++ ++ G + L I ANKNTVPG+ S + G+R+G
Sbjct: 302 KFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLG 361
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPALT+RGF E++ V+ + +
Sbjct: 362 TPALTARGFKEKEMEIVSNYIADILD 387
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A,
one-carbon metabolism, pyridoxa phosphate, structural
genomics; 1.60A {Burkholderia pseudomallei}
Length = 425
Score = 118 bits (297), Expect = 1e-32
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMG 60
G +LV+GGT+NHL+LV+L+ KG+ G++VE+ LE I NKN +P D + GIR+G
Sbjct: 310 GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLG 369
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVK 86
TPA T+RGF +F +V +
Sbjct: 370 TPAGTTRGFGAAEFREVGRLILEVFE 395
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.004
Identities = 26/154 (16%), Positives = 44/154 (28%), Gaps = 56/154 (36%)
Query: 10 TENH---LVLVN------LKNKGID-------G-S--------------RVEKVLEAVHI 38
T+ L L+ LK+KG+ G S +E ++E V
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 39 --AANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQ 96
+ VP D G+ P + F +E V V+ ++ T
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV-------VE---RVGKRTG 1838
Query: 97 GTKLKDFVATTQSANFQSE-----IAKRCHDVEE 125
V + N+ E A ++
Sbjct: 1839 W-----LV---EIVNYNVENQQYVAAGDLRALDT 1864
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 26.9 bits (60), Expect = 2.5
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 32 VLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
VL + + + V GG+R GT
Sbjct: 387 VLAETMPILEQRNLKDKLEVFVDGGVRRGT 416
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 26.8 bits (59), Expect = 3.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 131 PTIGFEKETMKYK 143
PT+GF ET+ YK
Sbjct: 352 PTVGFNVETVTYK 364
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 26.4 bits (59), Expect = 3.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 124 EEYAKQFPTIGFEKETMKYKS 144
E PTIGF ET++YK+
Sbjct: 23 GEIVTTIPTIGFNVETVEYKN 43
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer,
structural genomics, PSI, structure initiative; NMR
{Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Length = 76
Score = 25.2 bits (55), Expect = 3.3
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTS-----RGFVEEDFAKV 77
RVEK+++ + K V D++ M G T + R V ++F K
Sbjct: 11 RVEKIIQDLLDVLVKEEVTPDLALMCLG--NAVTNIIAQVPESKRVAVVDNFTKA 63
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 26.4 bits (58), Expect = 3.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 131 PTIGFEKETMKYK 143
PTIGF ET++YK
Sbjct: 195 PTIGFNVETVEYK 207
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 26.0 bits (58), Expect = 3.8
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 124 EEYAKQFPTIGFEKETMKYK 143
E+ + PT GF ++++ +
Sbjct: 39 EDISHITPTQGFNIKSVQSQ 58
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 25.7 bits (57), Expect = 5.0
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 124 EEYAKQFPTIGFEKETMKYK 143
E PTIG E +
Sbjct: 44 NEVVHTSPTIGSNVEEIVIN 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 5.4
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 18/42 (42%)
Query: 31 KVLEA-VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVE 71
K L+A + + A SA PAL + +E
Sbjct: 23 KKLQASLKLYA-----DD--SA----------PALAIKATME 47
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 25.7 bits (57), Expect = 6.0
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 124 EEYAKQFPTIGFEKETMKYK 143
E+ PT+GF +T++++
Sbjct: 41 EDVDTISPTLGFNIKTLEHR 60
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 25.3 bits (56), Expect = 6.6
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 124 EEYAKQFPTIGFEKETMKYK 143
E PTIG E +
Sbjct: 39 NEVVHTSPTIGSNVEEIVIN 58
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid
ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus
horikoshii} SCOP: c.55.3.1
Length = 220
Score = 25.7 bits (57), Expect = 6.7
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 114 SEIAK--RCHDVEEYAKQFPTIGFEK 137
S IAK R ++E+ +++ G
Sbjct: 145 SIIAKVTRDREIEKLKQKYGEFGSGY 170
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 25.4 bits (56), Expect = 6.7
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 15 VLVNLKNKGIDGSRVEKVLEAVHIA 39
V + + KG+D ++L+A+ +
Sbjct: 94 VYLYEELKGLDRDLFLEMLKALKLG 118
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix,
hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1
PDB: 1i3a_A 3p83_D*
Length = 225
Score = 25.3 bits (56), Expect = 7.1
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 114 SEIAK--RCHDVEEYAKQFPTIGFEK 137
S IAK R ++E ++F G
Sbjct: 159 SIIAKVEREREIERLKEKFGDFGSGY 184
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 25.3 bits (56), Expect = 7.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 131 PTIGFEKETMKYK 143
PTIGF ET++YK
Sbjct: 59 PTIGFNVETVEYK 71
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha,
northeast structural GEN consortium, NESG, structural
genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1
PDB: 2qti_A
Length = 80
Score = 24.4 bits (53), Expect = 7.2
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 77
+VE ++ + + K+ P D+S M G + SR V E FAK
Sbjct: 11 QVESLIAEILVVLEKHKAPTDLSLMALGNCVTHLLERKVPSESRQAVAEQFAKA 64
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 25.3 bits (56), Expect = 7.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 131 PTIGFEKETMKYK 143
PTIGF E K
Sbjct: 53 PTIGFSIEKFKSS 65
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 25.2 bits (56), Expect = 7.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 124 EEYAKQFPTIGFEKETMKYKS 144
E PTIGF ET+ YK+
Sbjct: 30 GEVVTTIPTIGFNVETVTYKN 50
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 25.3 bits (54), Expect = 7.4
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 23 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTP 62
G+ R+ + + TVP S G++ G
Sbjct: 130 GVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVD 169
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics,
PSI-2, protein structure initiative; NMR {Haemophilus
influenzae} SCOP: a.284.1.1
Length = 80
Score = 24.4 bits (53), Expect = 7.4
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 77
++ ++ + K+ P D+S + G + + T + + F+
Sbjct: 11 QLSAIVNDMIAVLEKHKAPVDLSLIALGNMASNLLTTSVPQTQCEALAQAFSNS 64
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural
genomics, PSI-2, protein structure initiative; NMR
{Vibrio parahaemolyticus} SCOP: a.284.1.1
Length = 83
Score = 24.4 bits (53), Expect = 7.5
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 77
+VEK+L V + K+ +++ M+ G + A + R + E FA+
Sbjct: 11 QVEKILAEVALVLEKHAASPELTLMIAGNIATNVLNQRVAASQRKLIAEKFAQA 64
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural
genomics, PSI-2, protein initiative, northeast
structural genomics consortium, NESG; NMR {Escherichia
coli} SCOP: a.284.1.1
Length = 83
Score = 24.5 bits (53), Expect = 7.7
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 28 RVEKVLEAVHIAANKNTVPGDVSAMVPGG----IRMGTPALTSRGFVEEDFAKV 77
+VE++L + K+ P D+S MV G + + A R + FA+
Sbjct: 11 QVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARA 64
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 25.3 bits (56), Expect = 8.3
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 26 GSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 85
G K+ A +A D+ + I + +++ED++ AY + +
Sbjct: 474 GKGAAKLRVAGVVAPTLPR--EDLEKI----IA----HFLIQQYLKEDYSFTAYATISYL 523
Query: 86 KLTVK 90
K+ K
Sbjct: 524 KIGPK 528
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation
protein family, structural genomics; 2.64A {Thermus
thermophilus} SCOP: d.204.1.1
Length = 105
Score = 24.5 bits (54), Expect = 8.6
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 61 TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVA 105
T A+ R +VE+ A++ + D + V + K A
Sbjct: 14 TDAI--RDYVEKKLARLDRYQDGELMAKVVLSLAGSPHVEKKARA 56
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 25.2 bits (56), Expect = 8.8
Identities = 3/13 (23%), Positives = 4/13 (30%)
Query: 131 PTIGFEKETMKYK 143
PT E +
Sbjct: 53 PTWHPTSEELAIG 65
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 24.9 bits (55), Expect = 9.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 124 EEYAKQFPTIGFEKETMKYKS 144
+ PT+G ET++YK+
Sbjct: 45 GDVVTTVPTVGVNLETLQYKN 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.362
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,128,949
Number of extensions: 118664
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 53
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.7 bits)