Query 032258
Match_columns 144
No_of_seqs 204 out of 1307
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 11:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.9 1E-22 2.2E-27 132.3 7.4 61 13-73 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.9 2.4E-22 5.2E-27 132.0 8.2 63 14-76 1-63 (64)
3 PHA00280 putative NHN endonucl 99.6 5.5E-16 1.2E-20 114.0 7.2 62 3-67 57-119 (121)
4 PF00847 AP2: AP2 domain; Int 99.3 5.9E-12 1.3E-16 79.8 5.6 52 13-64 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 86.1 3.4 7.4E-05 24.8 5.3 38 25-62 1-42 (46)
6 PF13356 DUF4102: Domain of un 82.0 6.8 0.00015 26.4 6.0 43 19-61 28-74 (89)
7 PF08846 DUF1816: Domain of un 71.1 12 0.00025 25.0 4.5 40 25-64 9-48 (68)
8 cd00801 INT_P4 Bacteriophage P 68.5 12 0.00025 30.2 5.0 38 24-61 10-49 (357)
9 PRK09692 integrase; Provisiona 67.6 18 0.00038 30.7 6.1 39 18-56 33-77 (413)
10 PHA02601 int integrase; Provis 62.0 14 0.00031 30.0 4.4 44 17-61 2-46 (333)
11 PF05036 SPOR: Sporulation rel 58.5 14 0.00031 23.1 3.1 24 35-58 42-65 (76)
12 PF08471 Ribonuc_red_2_N: Clas 42.0 30 0.00065 24.4 2.8 21 41-61 70-90 (93)
13 PRK10927 essential cell divisi 38.7 50 0.0011 28.3 4.1 34 26-59 273-306 (319)
14 PF14112 DUF4284: Domain of un 38.5 24 0.00052 25.6 1.9 18 37-54 2-19 (122)
15 cd04516 TBP_eukaryotes eukaryo 38.5 1.8E+02 0.004 22.4 7.2 48 12-62 33-81 (174)
16 COG0197 RplP Ribosomal protein 37.6 69 0.0015 24.4 4.3 37 25-64 95-131 (146)
17 PLN00062 TATA-box-binding prot 37.3 2E+02 0.0043 22.4 7.3 49 11-62 32-81 (179)
18 PF00352 TBP: Transcription fa 36.6 1.3E+02 0.0028 20.1 5.5 46 13-61 36-82 (86)
19 PF10729 CedA: Cell division a 31.9 98 0.0021 20.9 3.9 39 11-52 29-67 (80)
20 COG3087 FtsN Cell division pro 30.3 78 0.0017 26.4 3.8 32 26-57 216-249 (264)
21 COG2185 Sbm Methylmalonyl-CoA 27.7 46 0.001 25.2 2.0 18 37-54 42-59 (143)
22 PF12286 DUF3622: Protein of u 27.1 1E+02 0.0022 20.7 3.3 30 23-52 15-48 (71)
23 PF07494 Reg_prop: Two compone 26.7 1E+02 0.0022 15.7 2.8 8 38-45 17-24 (24)
24 cd04517 TLF TBP-like factors ( 25.3 3.2E+02 0.0068 21.0 6.8 46 14-62 35-81 (174)
25 TIGR01164 rplP_bact ribosomal 24.8 1.8E+02 0.0039 21.2 4.7 34 25-61 91-124 (126)
26 PRK09203 rplP 50S ribosomal pr 23.3 1.8E+02 0.0038 21.6 4.4 36 25-63 92-127 (138)
27 PRK12757 cell division protein 23.2 1.4E+02 0.0029 24.8 4.1 32 27-58 211-242 (256)
28 cd01433 Ribosomal_L16_L10e Rib 22.2 2.1E+02 0.0045 20.2 4.4 36 25-62 71-106 (112)
29 CHL00044 rpl16 ribosomal prote 22.0 1.9E+02 0.0042 21.4 4.3 36 25-63 92-127 (135)
30 PF11453 DUF2950: Protein of u 21.3 80 0.0017 26.4 2.4 49 43-99 3-59 (271)
31 PF12404 DUF3663: Peptidase ; 20.3 53 0.0012 22.4 0.9 41 58-98 10-50 (77)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.88 E-value=1e-22 Score=132.34 Aligned_cols=61 Identities=66% Similarity=1.210 Sum_probs=57.7
Q ss_pred CceeEEEEcCCCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 032258 13 GRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN 73 (144)
Q Consensus 13 S~yrGV~~~~~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFp~~ 73 (144)
|+|+||+++++|||+|+|+++..++++|||+|+|+|||++|||.++++++|.++.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899999988899999999776688999999999999999999999999999999999975
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.88 E-value=2.4e-22 Score=132.00 Aligned_cols=63 Identities=57% Similarity=1.103 Sum_probs=60.0
Q ss_pred ceeEEEEcCCCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 032258 14 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNPPE 76 (144)
Q Consensus 14 ~yrGV~~~~~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFp~~~~~ 76 (144)
+|+||+++++|||+|+|+++.+++.+|||+|+|+||||+|||.++++++|..+.+|||.+.|+
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 599999888999999999877899999999999999999999999999999999999999886
No 3
>PHA00280 putative NHN endonuclease
Probab=99.64 E-value=5.5e-16 Score=113.98 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCceeEEEEcC-CCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCC
Q 032258 3 RPSGGREGNNGRYKGVRMRK-WGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSAT 67 (144)
Q Consensus 3 r~~~~~~~~~S~yrGV~~~~-~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~ 67 (144)
+|.+.+++|+|+|+||+|++ .|||+|+|+ .+||+++||.|+++|+|+.||+ ++.+++|+++.
T Consensus 57 ~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 57 WNMKTPKSNTSGLKGLSWSKEREMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred cccCCCCCCCCCCCeeEEecCCCeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 56777889999999999876 689999999 7788999999999999999997 67889999875
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.30 E-value=5.9e-12 Score=79.78 Aligned_cols=52 Identities=37% Similarity=0.521 Sum_probs=45.2
Q ss_pred CceeEEEEcC-CCcEEEEEeccCC---CeeEeeccCCCHHHHHHHHHHHHHHhcCC
Q 032258 13 GRYKGVRMRK-WGKWVAEVRQPNS---RGRIWLGSYKTADEAARAYDAAVVCLRGS 64 (144)
Q Consensus 13 S~yrGV~~~~-~gkw~A~I~~~~~---~k~i~LG~f~t~eeAA~AYd~aa~~~~G~ 64 (144)
|+|+||++++ .++|+|+|++... ++.++||.|++++||+++++.+...++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 7899999876 6899999997321 48999999999999999999999999874
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=86.13 E-value=3.4 Score=24.77 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=29.0
Q ss_pred cEEEEEe--cc--CCCeeEeeccCCCHHHHHHHHHHHHHHhc
Q 032258 25 KWVAEVR--QP--NSRGRIWLGSYKTADEAARAYDAAVVCLR 62 (144)
Q Consensus 25 kw~A~I~--~~--~~~k~i~LG~f~t~eeAA~AYd~aa~~~~ 62 (144)
+|...|. .+ +++++++-+.|.|..||..+.......+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 4777773 33 34468899999999999999988777654
No 6
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=82.00 E-value=6.8 Score=26.42 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=29.5
Q ss_pred EEcCCC--cEEEEEeccCCCeeEeeccCCC--HHHHHHHHHHHHHHh
Q 032258 19 RMRKWG--KWVAEVRQPNSRGRIWLGSYKT--ADEAARAYDAAVVCL 61 (144)
Q Consensus 19 ~~~~~g--kw~A~I~~~~~~k~i~LG~f~t--~eeAA~AYd~aa~~~ 61 (144)
+..+.| .|.-+.+..++.+++.||.|++ ..+|..........+
T Consensus 28 ~v~~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~ 74 (89)
T PF13356_consen 28 RVTPSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALV 74 (89)
T ss_dssp EE-TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred EEEeCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence 445665 5999998777777999999976 566665555544444
No 7
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=71.07 E-value=12 Score=24.98 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=30.9
Q ss_pred cEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcCC
Q 032258 25 KWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGS 64 (144)
Q Consensus 25 kw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G~ 64 (144)
.|-++|.-..-.-..|.|-|++.+||..+...-...+..+
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~E 48 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLESE 48 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHhh
Confidence 5888998655556899999999999999876665555443
No 8
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=68.47 E-value=12 Score=30.18 Aligned_cols=38 Identities=34% Similarity=0.445 Sum_probs=28.9
Q ss_pred CcEEEEEeccCCCeeEeeccCC--CHHHHHHHHHHHHHHh
Q 032258 24 GKWVAEVRQPNSRGRIWLGSYK--TADEAARAYDAAVVCL 61 (144)
Q Consensus 24 gkw~A~I~~~~~~k~i~LG~f~--t~eeAA~AYd~aa~~~ 61 (144)
+.|+.+++..++..++.||+|+ +.++|..........+
T Consensus 10 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~ 49 (357)
T cd00801 10 KSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALL 49 (357)
T ss_pred EEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 3699999987777789999996 6777777666655444
No 9
>PRK09692 integrase; Provisional
Probab=67.60 E-value=18 Score=30.71 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=25.3
Q ss_pred EEEcCCC--cEEEEEecc--CCCeeEeeccCC--CHHHHHHHHHH
Q 032258 18 VRMRKWG--KWVAEVRQP--NSRGRIWLGSYK--TADEAARAYDA 56 (144)
Q Consensus 18 V~~~~~g--kw~A~I~~~--~~~k~i~LG~f~--t~eeAA~AYd~ 56 (144)
|+..+.| .|+.+.+.+ ++.+++.||.|+ |..+|......
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~ 77 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAE 77 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHH
Confidence 3445666 599988754 333457899999 67666554433
No 10
>PHA02601 int integrase; Provisional
Probab=61.95 E-value=14 Score=29.97 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=28.5
Q ss_pred EEEEcCCCcEEEEEecc-CCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 032258 17 GVRMRKWGKWVAEVRQP-NSRGRIWLGSYKTADEAARAYDAAVVCL 61 (144)
Q Consensus 17 GV~~~~~gkw~A~I~~~-~~~k~i~LG~f~t~eeAA~AYd~aa~~~ 61 (144)
+|+..++|+|++++... ..|+++. .+|.|..||....+.....+
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence 45556678999999853 2345554 36999988876655544433
No 11
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=58.45 E-value=14 Score=23.06 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=17.7
Q ss_pred CCeeEeeccCCCHHHHHHHHHHHH
Q 032258 35 SRGRIWLGSYKTADEAARAYDAAV 58 (144)
Q Consensus 35 ~~k~i~LG~f~t~eeAA~AYd~aa 58 (144)
..-+|.+|.|++.++|..+.....
T Consensus 42 ~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 42 PWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp TCEEEEECCECTCCHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHh
Confidence 334788888888888877776555
No 12
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=41.95 E-value=30 Score=24.43 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.9
Q ss_pred eccCCCHHHHHHHHHHHHHHh
Q 032258 41 LGSYKTADEAARAYDAAVVCL 61 (144)
Q Consensus 41 LG~f~t~eeAA~AYd~aa~~~ 61 (144)
-|.|+|+|+|..=||..+..|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 489999999999999877554
No 13
>PRK10927 essential cell division protein FtsN; Provisional
Probab=38.74 E-value=50 Score=28.26 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=25.3
Q ss_pred EEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHH
Q 032258 26 WVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVV 59 (144)
Q Consensus 26 w~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~ 59 (144)
|.|+|...+.-.+|.||-|.+.++|-++.++..-
T Consensus 273 ~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~ 306 (319)
T PRK10927 273 FDSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 306 (319)
T ss_pred CeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666654444458999999999999998877654
No 14
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=38.50 E-value=24 Score=25.58 Aligned_cols=18 Identities=33% Similarity=0.837 Sum_probs=13.8
Q ss_pred eeEeeccCCCHHHHHHHH
Q 032258 37 GRIWLGSYKTADEAARAY 54 (144)
Q Consensus 37 k~i~LG~f~t~eeAA~AY 54 (144)
..||||.|.+.++=-.=.
T Consensus 2 VsiWiG~f~s~~el~~Y~ 19 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEEYF 19 (122)
T ss_pred eEEEEecCCCHHHHHHHh
Confidence 369999999988765544
No 15
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=38.48 E-value=1.8e+02 Score=22.36 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=35.4
Q ss_pred CCceeEEEEcC-CCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhc
Q 032258 12 NGRYKGVRMRK-WGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLR 62 (144)
Q Consensus 12 ~S~yrGV~~~~-~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~ 62 (144)
..+|.||..|- .-+-.+-|. ..||-+--|. .++|+|..|.++.+..+.
T Consensus 33 Pe~fpgli~Rl~~Pk~t~lIF--~SGKiviTGa-ks~e~a~~a~~~i~~~L~ 81 (174)
T cd04516 33 PKRFAAVIMRIREPKTTALIF--SSGKMVCTGA-KSEDDSKLAARKYARIIQ 81 (174)
T ss_pred CccCcEEEEEeCCCcEEEEEE--CCCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 45788996664 346677777 6776776676 578899999988887774
No 16
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=37.63 E-value=69 Score=24.40 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=30.4
Q ss_pred cEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcCC
Q 032258 25 KWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGS 64 (144)
Q Consensus 25 kw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G~ 64 (144)
.|+|.|. .|+.++-=..++++.|.+|.-.|+.+|-+.
T Consensus 95 gwaArVk---pG~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 95 GWAARVK---PGRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEEec---CCcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 5999998 355777777888999999999999888654
No 17
>PLN00062 TATA-box-binding protein; Provisional
Probab=37.27 E-value=2e+02 Score=22.35 Aligned_cols=49 Identities=22% Similarity=0.146 Sum_probs=35.2
Q ss_pred CCCceeEEEEcC-CCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhc
Q 032258 11 NNGRYKGVRMRK-WGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLR 62 (144)
Q Consensus 11 ~~S~yrGV~~~~-~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~ 62 (144)
+..+|-||..|- .-+=.+-|. ..||-+--| ..++|+|..|.++.+..+.
T Consensus 32 ePe~fpgli~Rl~~Pk~t~lIF--~SGKiviTG-aks~e~a~~a~~~~~~~L~ 81 (179)
T PLN00062 32 NPKRFAAVIMRIREPKTTALIF--ASGKMVCTG-AKSEHDSKLAARKYARIIQ 81 (179)
T ss_pred CCccCcEEEEEeCCCcEEEEEE--CCCeEEEEe-cCCHHHHHHHHHHHHHHHH
Confidence 345789996664 346677777 666565555 4788999999998887774
No 18
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=36.55 E-value=1.3e+02 Score=20.05 Aligned_cols=46 Identities=24% Similarity=0.266 Sum_probs=32.9
Q ss_pred CceeEEEEcC-CCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 032258 13 GRYKGVRMRK-WGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCL 61 (144)
Q Consensus 13 S~yrGV~~~~-~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~ 61 (144)
.+|.||.++- .-+-...|. ..||-+..|. .++|++..|.+.....+
T Consensus 36 e~fpgl~~r~~~p~~t~~IF--~sGki~itGa-ks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 36 ERFPGLIYRLRNPKATVLIF--SSGKIVITGA-KSEEEAKKAIEKILPIL 82 (86)
T ss_dssp TTESSEEEEETTTTEEEEEE--TTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEeecCCcEEEEEE--cCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 4688986653 336666777 6776666664 78999999998877655
No 19
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=31.93 E-value=98 Score=20.86 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCCceeEEEEcCCCcEEEEEeccCCCeeEeeccCCCHHHHHH
Q 032258 11 NNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAAR 52 (144)
Q Consensus 11 ~~S~yrGV~~~~~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~ 52 (144)
.--+||-|.. -.|||+|.+..... -.---.|..+|.|-+
T Consensus 29 k~dgfrdvw~-lrgkyvafvl~ge~--f~rsp~fs~pesaqr 67 (80)
T PF10729_consen 29 KMDGFRDVWQ-LRGKYVAFVLMGEH--FRRSPAFSVPESAQR 67 (80)
T ss_dssp -TTTECCECC-CCCEEEEEEESSS---EEE---BSSHHHHHH
T ss_pred hcccccceee-eccceEEEEEecch--hccCCCcCCcHHHHH
Confidence 3457888743 34899999984322 333456888887765
No 20
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=30.28 E-value=78 Score=26.41 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=23.5
Q ss_pred EEEEEe--ccCCCeeEeeccCCCHHHHHHHHHHH
Q 032258 26 WVAEVR--QPNSRGRIWLGSYKTADEAARAYDAA 57 (144)
Q Consensus 26 w~A~I~--~~~~~k~i~LG~f~t~eeAA~AYd~a 57 (144)
..++|. .++...++-||.|++.++|..|-++.
T Consensus 216 ~sskI~~~~~~~wyRV~vGP~n~~~~a~~aq~rL 249 (264)
T COG3087 216 ISSKITGVTNGGWYRVRVGPFNSKADAVKAQKRL 249 (264)
T ss_pred ccceeEeecCCceEEEEecCCCcHHHHHHHHHHH
Confidence 345555 33444599999999999999977664
No 21
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.69 E-value=46 Score=25.20 Aligned_cols=18 Identities=44% Similarity=0.542 Sum_probs=15.9
Q ss_pred eeEeeccCCCHHHHHHHH
Q 032258 37 GRIWLGSYKTADEAARAY 54 (144)
Q Consensus 37 k~i~LG~f~t~eeAA~AY 54 (144)
.-+++|.|.|+||++++=
T Consensus 42 eVi~~g~~~tp~e~v~aA 59 (143)
T COG2185 42 EVINLGLFQTPEEAVRAA 59 (143)
T ss_pred eEEecCCcCCHHHHHHHH
Confidence 579999999999999873
No 22
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=27.14 E-value=1e+02 Score=20.69 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=19.2
Q ss_pred CCcEEEEEeccCCCeeEe----eccCCCHHHHHH
Q 032258 23 WGKWVAEVRQPNSRGRIW----LGSYKTADEAAR 52 (144)
Q Consensus 23 ~gkw~A~I~~~~~~k~i~----LG~f~t~eeAA~ 52 (144)
.+.|.|+|.-....++.- --.|+|++||-.
T Consensus 15 ~~~W~aEItR~vTsrkTvVSK~~~GF~SEaeAq~ 48 (71)
T PF12286_consen 15 RNGWTAEITRRVTSRKTVVSKRQDGFASEAEAQA 48 (71)
T ss_pred CCceeeeeeeeecCceeEEEecccCcccHHHHHH
Confidence 467999998544433222 246999988653
No 23
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=26.75 E-value=1e+02 Score=15.72 Aligned_cols=8 Identities=38% Similarity=1.531 Sum_probs=6.7
Q ss_pred eEeeccCC
Q 032258 38 RIWLGSYK 45 (144)
Q Consensus 38 ~i~LG~f~ 45 (144)
++|+||+.
T Consensus 17 ~lWigT~~ 24 (24)
T PF07494_consen 17 NLWIGTYN 24 (24)
T ss_dssp CEEEEETS
T ss_pred CEEEEeCC
Confidence 89999874
No 24
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=25.26 E-value=3.2e+02 Score=20.98 Aligned_cols=46 Identities=30% Similarity=0.241 Sum_probs=34.0
Q ss_pred ceeEEEEcC-CCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhc
Q 032258 14 RYKGVRMRK-WGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLR 62 (144)
Q Consensus 14 ~yrGV~~~~-~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~ 62 (144)
+|.||..|- .-+-.+-|. ..||-+-.| ..++|+|.+|.++.+..+.
T Consensus 35 ~fpgli~R~~~Pk~t~lIF--~sGKiviTG-aks~~~~~~a~~~~~~~l~ 81 (174)
T cd04517 35 RYPKVTMRLREPRATASVW--SSGKITITG-ATSEEEAKQAARRAARLLQ 81 (174)
T ss_pred CCCEEEEEecCCcEEEEEE--CCCeEEEEc-cCCHHHHHHHHHHHHHHHH
Confidence 899997663 347777888 666555444 5889999999998887774
No 25
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=24.82 E-value=1.8e+02 Score=21.23 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=26.0
Q ss_pred cEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 032258 25 KWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCL 61 (144)
Q Consensus 25 kw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~ 61 (144)
.|+|.|. .+..-+-++. .+++.|..|...|+.+|
T Consensus 91 ~~varV~--~G~ilfEi~~-~~~~~a~~al~~a~~KL 124 (126)
T TIGR01164 91 YWVAVVK--PGKILFEIAG-VPEEVAREAFRLAASKL 124 (126)
T ss_pred EEEEEEC--CCCEEEEEeC-CCHHHHHHHHHHHHhcC
Confidence 5999999 3333445555 89999999999988765
No 26
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=23.31 E-value=1.8e+02 Score=21.63 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=27.5
Q ss_pred cEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcC
Q 032258 25 KWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRG 63 (144)
Q Consensus 25 kw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G 63 (144)
.|+|.|. .+.--+-++. .+++.|..|...|+.+|-+
T Consensus 92 ~~varVk--~G~iifEi~~-~~~~~a~~al~~a~~KLP~ 127 (138)
T PRK09203 92 YWVAVVK--PGRILFEIAG-VSEELAREALRLAAAKLPI 127 (138)
T ss_pred EEEEEEC--CCCEEEEEeC-CCHHHHHHHHHHHhccCCC
Confidence 5999999 3333455555 8999999999999887754
No 27
>PRK12757 cell division protein FtsN; Provisional
Probab=23.19 E-value=1.4e+02 Score=24.82 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEEeccCCCeeEeeccCCCHHHHHHHHHHHH
Q 032258 27 VAEVRQPNSRGRIWLGSYKTADEAARAYDAAV 58 (144)
Q Consensus 27 ~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa 58 (144)
.++|...++-.||.||-|.+.++|..+-++..
T Consensus 211 ~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk 242 (256)
T PRK12757 211 ESRITTGGGWNRVVLGPYNSKAAADKMLQRLK 242 (256)
T ss_pred ceEEeecCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444333334777888888888777766655
No 28
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=22.19 E-value=2.1e+02 Score=20.16 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=25.9
Q ss_pred cEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhc
Q 032258 25 KWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLR 62 (144)
Q Consensus 25 kw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~ 62 (144)
.|+|.|. .+..-+-++.....+.|..|...++.++-
T Consensus 71 ~~~a~v~--~G~iifEi~~~~~~~~~~~alk~a~~Klp 106 (112)
T cd01433 71 GWVARVK--PGQILFEVRGVPEEEVAKEALRRAAKKLP 106 (112)
T ss_pred EEEEEEC--CCCEEEEEeCcCcHHHHHHHHHHhhccCC
Confidence 6999999 34334555555558999999888887763
No 29
>CHL00044 rpl16 ribosomal protein L16
Probab=21.98 E-value=1.9e+02 Score=21.42 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=25.8
Q ss_pred cEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcC
Q 032258 25 KWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRG 63 (144)
Q Consensus 25 kw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G 63 (144)
.|+|.|. .+..-+-++. .+++.|..|...|+.+|-.
T Consensus 92 ~~va~V~--~G~ilfEi~g-~~~~~ak~al~~a~~KLP~ 127 (135)
T CHL00044 92 YWVAVVK--PGRILYEMGG-VSETIARAAIKIAAYKMPI 127 (135)
T ss_pred EEEEEEC--CCcEEEEEeC-CCHHHHHHHHHHHhhcCCC
Confidence 5999999 3333444555 6678999999998887743
No 30
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=21.29 E-value=80 Score=26.42 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=31.6
Q ss_pred cCCCHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 032258 43 SYKTADEAARAYDAAVVC--------LRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRA 99 (144)
Q Consensus 43 ~f~t~eeAA~AYd~aa~~--------~~G~~a~~NFp~~~~~~~~~~~~s~~~iq~~a~~~a~~~ 99 (144)
.|+|+|+|+.|+-.|+.. +.|....-=. |. .....+++..|.+..+.+.
T Consensus 3 ~F~tPe~Aa~Al~~Av~~~d~~aL~~vLG~~~~~~v-------p~-~~~d~~~~~~Fl~~w~~~h 59 (271)
T PF11453_consen 3 VFPTPEAAADALVDAVATNDEDALAKVLGPDWRDLV-------PS-GGADREDRYRFLRAWAEKH 59 (271)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHhCccHHhcc-------CC-CCccHHHHHHHHHHHHhhc
Confidence 699999999999666543 4444332111 11 2266888888888776654
No 31
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=20.28 E-value=53 Score=22.38 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=27.9
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 032258 58 VVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARR 98 (144)
Q Consensus 58 a~~~~G~~a~~NFp~~~~~~~~~~~~s~~~iq~~a~~~a~~ 98 (144)
+-..||++|.+.|-.....+-+........||.++++....
T Consensus 10 A~a~WG~~AllSf~~~ga~IHl~~~~~l~~IQrAaRkLd~q 50 (77)
T PF12404_consen 10 AAAHWGEKALLSFNEQGATIHLSEGDDLRAIQRAARKLDGQ 50 (77)
T ss_pred ChhHhCcCcEEEEcCCCEEEEECCCcchHHHHHHHHHHhhC
Confidence 33467889999888776666554455667788877765443
Done!