Query 032258
Match_columns 144
No_of_seqs 204 out of 1307
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 19:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.6E-26 5.4E-31 151.3 6.5 60 14-73 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 91.2 0.18 6.1E-06 33.4 3.2 26 10-35 3-29 (77)
3 3jtz_A Integrase; four strande 89.9 0.84 2.9E-05 30.4 5.8 45 18-62 28-76 (88)
4 1z1b_A Integrase; protein-DNA 87.8 0.81 2.8E-05 35.8 5.3 41 17-61 15-55 (356)
5 3ju0_A Phage integrase; four s 84.6 2.1 7.3E-05 29.5 5.5 45 18-62 28-76 (108)
6 1u3e_M HNH homing endonuclease 83.0 0.2 6.7E-06 37.1 -0.4 38 15-55 109-146 (174)
7 1x60_A Sporulation-specific N- 63.2 5.5 0.00019 25.0 2.7 33 27-59 36-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 58.0 7.9 0.00027 24.5 2.8 33 27-59 36-68 (81)
9 1b69_A Protein (integrase); in 58.0 12 0.00041 24.0 3.6 29 12-40 9-38 (69)
10 2ftc_I Mitochondrial ribosomal 43.3 45 0.0015 23.2 5.0 37 25-63 79-115 (118)
11 3r8s_M 50S ribosomal protein L 26.9 88 0.003 22.3 4.4 36 25-63 91-126 (136)
12 3eik_A Tata-box-binding protei 24.2 1.7E+02 0.0057 22.5 5.8 49 12-63 74-123 (218)
13 3lwd_A 6-phosphogluconolactona 22.9 82 0.0028 23.8 3.8 33 42-74 103-147 (226)
14 1kcq_A Gelsolin, brevin, ADF, 21.8 1.5E+02 0.0053 19.2 4.7 36 25-60 28-63 (104)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=1.6e-26 Score=151.26 Aligned_cols=60 Identities=53% Similarity=1.011 Sum_probs=56.9
Q ss_pred ceeEEEEcCCCcEEEEEeccCC-CeeEeeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 032258 14 RYKGVRMRKWGKWVAEVRQPNS-RGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN 73 (144)
Q Consensus 14 ~yrGV~~~~~gkw~A~I~~~~~-~k~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFp~~ 73 (144)
+||||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999999999999999874 68999999999999999999999999999999999975
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=91.19 E-value=0.18 Score=33.42 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.0
Q ss_pred CCCCceeEEEEcC-CCcEEEEEeccCC
Q 032258 10 GNNGRYKGVRMRK-WGKWVAEVRQPNS 35 (144)
Q Consensus 10 ~~~S~yrGV~~~~-~gkw~A~I~~~~~ 35 (144)
..+|+|+||+|.+ .+.|.|.-.+.++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~ 29 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGAS 29 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCe
Confidence 4679999999986 5899999996644
No 3
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=89.91 E-value=0.84 Score=30.45 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=34.2
Q ss_pred EEEcCCC--cEEEEEeccCCCeeEeeccCC--CHHHHHHHHHHHHHHhc
Q 032258 18 VRMRKWG--KWVAEVRQPNSRGRIWLGSYK--TADEAARAYDAAVVCLR 62 (144)
Q Consensus 18 V~~~~~g--kw~A~I~~~~~~k~i~LG~f~--t~eeAA~AYd~aa~~~~ 62 (144)
++..++| .|+-+.+..++.+++.||.|+ |.++|....+.+...+.
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence 3455665 599988877777789999997 58888888777776653
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=87.82 E-value=0.81 Score=35.76 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=29.7
Q ss_pred EEEEcCCCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 032258 17 GVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCL 61 (144)
Q Consensus 17 GV~~~~~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~ 61 (144)
||+.++.|.|..+.. .+|+++.+|. |..||......+...+
T Consensus 15 ~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 577777789987765 5667889996 8888877766554433
No 5
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=84.61 E-value=2.1 Score=29.54 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=33.5
Q ss_pred EEEcCCC--cEEEEEeccCCCeeEeeccCC--CHHHHHHHHHHHHHHhc
Q 032258 18 VRMRKWG--KWVAEVRQPNSRGRIWLGSYK--TADEAARAYDAAVVCLR 62 (144)
Q Consensus 18 V~~~~~g--kw~A~I~~~~~~k~i~LG~f~--t~eeAA~AYd~aa~~~~ 62 (144)
|+..++| .|+-+.+..++.+++.||.|+ |..+|....+.+...+.
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~ 76 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLA 76 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3455665 599988876777789999997 58888877777666653
No 6
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=83.02 E-value=0.2 Score=37.11 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=28.1
Q ss_pred eeEEEEcCCCcEEEEEeccCCCeeEeeccCCCHHHHHHHHH
Q 032258 15 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYD 55 (144)
Q Consensus 15 yrGV~~~~~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd 55 (144)
.+||.+.+.++|.+.|... +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence 3566442235688888854 4677999999999999964
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=63.18 E-value=5.5 Score=25.00 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=23.1
Q ss_pred EEEEeccCCCeeEeeccCCCHHHHHHHHHHHHH
Q 032258 27 VAEVRQPNSRGRIWLGSYKTADEAARAYDAAVV 59 (144)
Q Consensus 27 ~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~ 59 (144)
.+.|.....--+|++|.|.+.++|..+-+....
T Consensus 36 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 36 DSIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp CEEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344443333348999999999999988766554
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=57.98 E-value=7.9 Score=24.53 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=23.9
Q ss_pred EEEEeccCCCeeEeeccCCCHHHHHHHHHHHHH
Q 032258 27 VAEVRQPNSRGRIWLGSYKTADEAARAYDAAVV 59 (144)
Q Consensus 27 ~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~ 59 (144)
.+.|.....--+|.+|.|.+.++|..+-++...
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 455553334459999999999999888766554
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=57.96 E-value=12 Score=24.02 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=21.1
Q ss_pred CCceeEEEEcCCCcEEEEEecc-CCCeeEe
Q 032258 12 NGRYKGVRMRKWGKWVAEVRQP-NSRGRIW 40 (144)
Q Consensus 12 ~S~yrGV~~~~~gkw~A~I~~~-~~~k~i~ 40 (144)
.--+.|++.++.|+|+..+.+. ++.+.||
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~~Gkr~~vY 38 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDSFGEPQFVY 38 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCeEEccCCcEEEEEEcCCCCEEEEE
Confidence 3557789999999999999876 3333444
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=43.26 E-value=45 Score=23.21 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=29.2
Q ss_pred cEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcC
Q 032258 25 KWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRG 63 (144)
Q Consensus 25 kw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G 63 (144)
.|+|.|. -+..-+-++...+++.|..|...|+.+|-+
T Consensus 79 ~wva~Vk--~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVK--AGRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEEC--CCCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 5999998 444456666668899999999999988743
No 11
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=26.94 E-value=88 Score=22.29 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=27.9
Q ss_pred cEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcC
Q 032258 25 KWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRG 63 (144)
Q Consensus 25 kw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G 63 (144)
.|+|.|. .+..-+-++. .+++.|..|...|+.+|-+
T Consensus 91 ~wva~Vk--~G~ilfEi~g-~~~~~A~eAlr~a~~KLP~ 126 (136)
T 3r8s_M 91 YWVALIQ--PGKVLYEMDG-VPEELAREAFKLAAAKLPI 126 (136)
T ss_dssp EEEEEEC--TTCEEEEEES-SCHHHHHHHHHHHHTTCSS
T ss_pred EEEEEEC--CCCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 4999998 4444556666 5999999999999988754
No 12
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=24.18 E-value=1.7e+02 Score=22.52 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=36.8
Q ss_pred CCceeEEEEc-CCCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcC
Q 032258 12 NGRYKGVRMR-KWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRG 63 (144)
Q Consensus 12 ~S~yrGV~~~-~~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G 63 (144)
..+|-||.+| ..-+-.+-|. ..||-+..|. .++|+|..|.++.+..+..
T Consensus 74 Pe~Fpglv~Rl~~Pk~t~LIF--~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~ 123 (218)
T 3eik_A 74 PKRFAAVIMRIREPKTTALIF--ASGKMVITGA-KSEKSSRMAAQRYAKIIHK 123 (218)
T ss_dssp TTTCSSEEEEETTTTEEEEEC--TTSEEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCcEEEEEE--CCCeEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence 3568888555 3457888888 7777777776 6799999999998887753
No 13
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=22.89 E-value=82 Score=23.83 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=25.1
Q ss_pred ccCCCHHHHHHHHHHHHHHhc-C-----------CCCCCCCCCCC
Q 032258 42 GSYKTADEAARAYDAAVVCLR-G-----------SSATLNFPDNP 74 (144)
Q Consensus 42 G~f~t~eeAA~AYd~aa~~~~-G-----------~~a~~NFp~~~ 74 (144)
|.-.++|++++.|+.....+. + .+...|||.++
T Consensus 103 ~~~~~~~~~~~~ye~~i~~~~~~~Dl~lLG~G~dGH~as~fPg~~ 147 (226)
T 3lwd_A 103 TDDDTPEAGVETVAERLESLPWPASAVILGMGGDGHTASLFPDSE 147 (226)
T ss_dssp CSSSSHHHHHHHHHHHHHTSCSSBSEEEECCCTTSCBTTBCTTCT
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCCCEEEECcCCCCCeeecCCCCh
Confidence 556789999999999877653 2 24579999865
No 14
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=21.80 E-value=1.5e+02 Score=19.23 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=28.9
Q ss_pred cEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHH
Q 032258 25 KWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVC 60 (144)
Q Consensus 25 kw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~ 60 (144)
.--+.|-+.+..-.+|.|...+..|...|-+.|...
T Consensus 28 s~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 28 NGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp TTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345677766666689999999999999999888654
Done!