Query 032260
Match_columns 144
No_of_seqs 153 out of 1286
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 11:44:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03557 zinc transporter ZitB 99.8 6.6E-20 1.4E-24 153.9 9.9 71 74-144 14-84 (312)
2 COG1230 CzcD Co/Zn/Cd efflux s 99.8 2.1E-18 4.5E-23 145.7 9.7 79 66-144 9-87 (296)
3 COG0053 MMT1 Predicted Co/Zn/C 99.7 1E-17 2.2E-22 141.2 9.1 72 73-144 7-78 (304)
4 PRK09509 fieF ferrous iron eff 99.7 1.8E-16 4E-21 131.8 9.5 70 75-144 7-76 (299)
5 KOG1485 Mitochondrial Fe2+ tra 99.6 9E-15 2E-19 128.0 8.9 68 77-144 113-180 (412)
6 TIGR01297 CDF cation diffusion 99.4 1.1E-13 2.4E-18 111.8 3.7 54 91-144 2-55 (268)
7 PF01545 Cation_efflux: Cation 99.3 1.4E-13 3.1E-18 111.5 -0.7 64 81-144 1-64 (284)
8 KOG1482 Zn2+ transporter [Inor 99.3 2.7E-12 5.7E-17 111.3 6.9 69 76-144 70-138 (379)
9 KOG1483 Zn2+ transporter ZNT1 99.1 4.1E-11 8.9E-16 104.6 4.6 66 78-143 8-73 (404)
10 KOG1484 Putative Zn2+ transpor 99.1 4.3E-10 9.3E-15 96.8 7.4 68 77-144 33-100 (354)
11 KOG2802 Membrane protein HUEL 99.0 7.5E-10 1.6E-14 97.0 6.2 67 78-144 206-272 (503)
12 COG3965 Predicted Co/Zn/Cd cat 98.9 4E-09 8.6E-14 88.8 6.3 70 75-144 16-86 (314)
13 COG0053 MMT1 Predicted Co/Zn/C 96.5 0.01 2.2E-07 50.3 7.4 51 79-129 121-171 (304)
14 TIGR01297 CDF cation diffusion 95.5 0.048 1E-06 43.9 6.6 54 78-131 97-150 (268)
15 PRK09509 fieF ferrous iron eff 95.2 0.11 2.4E-06 43.3 7.9 53 80-132 120-172 (299)
16 PRK03557 zinc transporter ZitB 81.7 7.6 0.00016 32.7 7.4 30 102-131 148-177 (312)
17 KOG1485 Mitochondrial Fe2+ tra 71.9 13 0.00029 33.4 6.4 54 81-134 233-286 (412)
18 PF11712 Vma12: Endoplasmic re 62.3 36 0.00079 25.5 6.3 48 80-127 76-126 (142)
19 PF01545 Cation_efflux: Cation 39.4 18 0.0004 29.0 1.6 52 81-132 109-162 (284)
20 COG5546 Small integral membran 36.6 34 0.00073 24.1 2.3 42 80-128 12-53 (80)
21 PF08047 His_leader: Histidine 32.8 26 0.00056 17.5 0.9 8 63-70 7-14 (16)
22 PF04246 RseC_MucC: Positive r 32.7 2E+02 0.0043 21.0 7.9 51 87-137 73-123 (135)
23 PF09685 Tic20: Tic20-like pro 28.7 1.9E+02 0.0042 19.7 9.2 25 117-141 80-104 (109)
24 PF04892 VanZ: VanZ like famil 28.0 99 0.0021 21.9 3.7 29 108-136 103-131 (133)
25 PRK09727 his operon leader pep 27.6 31 0.00067 19.1 0.7 12 61-72 5-16 (26)
26 PF02532 PsbI: Photosystem II 26.3 1.6E+02 0.0034 17.8 3.8 24 80-103 3-26 (36)
27 PF14995 TMEM107: Transmembran 25.6 2.1E+02 0.0046 21.3 5.2 47 75-121 41-92 (124)
28 PF04531 Phage_holin_1: Bacter 24.7 2.4E+02 0.0053 19.5 6.3 47 78-126 10-56 (84)
29 PF02628 COX15-CtaA: Cytochrom 20.8 3.8E+02 0.0082 22.1 6.4 58 77-134 95-155 (302)
No 1
>PRK03557 zinc transporter ZitB; Provisional
Probab=99.81 E-value=6.6e-20 Score=153.92 Aligned_cols=71 Identities=24% Similarity=0.438 Sum_probs=67.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 74 GKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 74 ~~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
++..+|++++++++|++++++|+++|+++||+||++||+||++|+++.+++++++++++||+|++|||||+
T Consensus 14 ~~~~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~ 84 (312)
T PRK03557 14 EDNNARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWL 84 (312)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999996
No 2
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.1e-18 Score=145.69 Aligned_cols=79 Identities=28% Similarity=0.410 Sum_probs=72.0
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 66 HDHHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 66 h~h~~~~~~~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
|+|+|.+...+.+|++++++++|++++++|+++|+++||+||+||++|+++|+++.+++++++++++||++++|||||+
T Consensus 9 h~h~~~~~~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~ 87 (296)
T COG1230 9 HGHDHAHDNPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYK 87 (296)
T ss_pred cCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHh
Confidence 3333334456788999999999999999999999999999999999999999999999999999999999999999995
No 3
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1e-17 Score=141.17 Aligned_cols=72 Identities=40% Similarity=0.579 Sum_probs=69.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 73 SGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 73 ~~~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
+.+..++..++++++|++++++|+++|+++||.||+|||+||++|++++++.++++++++||||++||||||
T Consensus 7 ~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~ 78 (304)
T COG0053 7 RLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHG 78 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCch
Confidence 356788999999999999999999999999999999999999999999999999999999999999999996
No 4
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=99.68 E-value=1.8e-16 Score=131.83 Aligned_cols=70 Identities=23% Similarity=0.253 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 75 KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 75 ~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
+..+|..++++++|++++++|+++|+++||+||++||+||+.|+++.++++++.++++||+|++|||||+
T Consensus 7 ~~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~ 76 (299)
T PRK09509 7 RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHG 76 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999996
No 5
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.57 E-value=9e-15 Score=127.96 Aligned_cols=68 Identities=43% Similarity=0.573 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 77 AENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 77 ~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
++++.++++++|++++++|+++|+++||+||+||++|++.|+++.++.++.++.++||++.+||+|++
T Consensus 113 ~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~ 180 (412)
T KOG1485|consen 113 ERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRG 180 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999986
No 6
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=99.42 E-value=1.1e-13 Score=111.78 Aligned_cols=54 Identities=48% Similarity=0.720 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 91 LAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 91 l~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
++++|+++|+++||.||++||+|++.|+++.++.++++++++||||++|||||+
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~ 55 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHG 55 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchH
Confidence 467899999999999999999999999999999999999999999999999996
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=99.33 E-value=1.4e-13 Score=111.51 Aligned_cols=64 Identities=33% Similarity=0.527 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 81 FRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 81 l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
++++++++++++++|+++|+++||.++++|++|++.|+++.++++++.+.++||+|++|||||+
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~ 64 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYG 64 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSST
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchh
Confidence 5789999999999999999999999999999999999999999999999999999999999996
No 8
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.7e-12 Score=111.35 Aligned_cols=69 Identities=32% Similarity=0.430 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 76 DAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 76 ~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
..+|.++++.++++++++.|+++|+.+||+|+++||.|.++|+.+..++++++|+++||++++.+|||.
T Consensus 70 ~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~ 138 (379)
T KOG1482|consen 70 AAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFH 138 (379)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceeccee
Confidence 357899999999999999999999999999999999999999999999999999999999999999984
No 9
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.13 E-value=4.1e-11 Score=104.57 Aligned_cols=66 Identities=27% Similarity=0.384 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 032260 78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGH 143 (144)
Q Consensus 78 ~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~ 143 (144)
+..+...++++++|+++|++.|++++|+||++|++|+++|++++++++++++.+++.++.++||||
T Consensus 8 ~~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw 73 (404)
T KOG1483|consen 8 SLRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGW 73 (404)
T ss_pred ccceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcch
Confidence 456777889999999999999999999999999999999999999999999999997889999998
No 10
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.06 E-value=4.3e-10 Score=96.82 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 77 AENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 77 ~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
..|.+.+.+++|+.++.+|++.|.+++|+.|++|++|++.|+.++.+.+++.+++++|++.+|+|||+
T Consensus 33 ~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~ 100 (354)
T KOG1484|consen 33 DSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYG 100 (354)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchh
Confidence 34678888899999999999999999999999999999999999999999999999999999999984
No 11
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=98.98 E-value=7.5e-10 Score=97.02 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 78 ~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
.|...+++++|++-+..|+.+++.|||-+|+|+++||++|....++..++++.+.+.||..|||||+
T Consensus 206 ~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYs 272 (503)
T KOG2802|consen 206 GRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYS 272 (503)
T ss_pred CceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Confidence 4567789999999999999999999999999999999999999999999999999999999999995
No 12
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.87 E-value=4e-09 Score=88.83 Aligned_cols=70 Identities=30% Similarity=0.459 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCCC
Q 032260 75 KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAK-APKDKEHPYGHF 144 (144)
Q Consensus 75 ~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~-kp~d~~~pfG~~ 144 (144)
.-+++.+.++++.+++++...++.|+++||.+++.||++|+.|++..+++++..++.. +|.|.|||||+|
T Consensus 16 ~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~Gfw 86 (314)
T COG3965 16 SNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFW 86 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchh
Confidence 3467899999999999999999999999999999999999999999999999888887 677779999986
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.01 Score=50.32 Aligned_cols=51 Identities=27% Similarity=0.211 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032260 79 NIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYK 129 (144)
Q Consensus 79 r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~ 129 (144)
-...++++++..+...+.-.|--+||.+|.||+.|..+|+++++..++++-
T Consensus 121 ~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~ 171 (304)
T COG0053 121 GVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL 171 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888899999999999999999999999999988876
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=95.51 E-value=0.048 Score=43.92 Aligned_cols=54 Identities=28% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032260 78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAA 131 (144)
Q Consensus 78 ~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a 131 (144)
-....+++++|+++...+.-.|.-.+|.++.+|+.|.+.|+++++..+++...+
T Consensus 97 ~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~ 150 (268)
T TIGR01297 97 LIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLI 150 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888889999999999999999999998888877655
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=95.18 E-value=0.11 Score=43.30 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 032260 80 IFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAK 132 (144)
Q Consensus 80 ~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~ 132 (144)
...+++++|+++...+...+-.++|.++.+|+.|...|+++++..++++.++.
T Consensus 120 ~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~ 172 (299)
T PRK09509 120 VTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW 172 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777887777777788889999999999999999999988888877653
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=81.70 E-value=7.6 Score=32.75 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=25.8
Q ss_pred hchHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032260 102 SGSTAIIADAAHSISDVVLSSIALWSYKAA 131 (144)
Q Consensus 102 sgSlALlADA~Hsl~Dv~a~~v~l~al~~a 131 (144)
.+|.++.+|+.|.+.|+++++..+++..+.
T Consensus 148 ~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~ 177 (312)
T PRK03557 148 EKNLNVRAAALHVLGDLLGSVGAIIAALII 177 (312)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998887776554
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=71.89 E-value=13 Score=33.41 Aligned_cols=54 Identities=17% Similarity=0.038 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCC
Q 032260 81 FRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAP 134 (144)
Q Consensus 81 l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp 134 (144)
..+++....+.+.+=...+-.++|-.++|-|+|=..|+++..++|+|.+.+..-
T Consensus 233 i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~ 286 (412)
T KOG1485|consen 233 IAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYY 286 (412)
T ss_pred heehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 334444444555555567888999999999999999999999999999988653
No 18
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=62.31 E-value=36 Score=25.51 Aligned_cols=48 Identities=8% Similarity=0.006 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HH-HhchHH-HHHhhHHHHHHHHHHHHHHHH
Q 032260 80 IFRLGLASDVGLAAGKALT-GY-LSGSTA-IIADAAHSISDVVLSSIALWS 127 (144)
Q Consensus 80 ~l~isl~inlil~i~eii~-G~-~sgSlA-LlADA~Hsl~Dv~a~~v~l~a 127 (144)
.-.+++++|+++.++-.++ || ++++.. -..++.-.+.-+++.++.+++
T Consensus 76 ~~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvA 126 (142)
T PF11712_consen 76 KRQLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVA 126 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 4557788888887665544 33 555555 568888888888888777665
No 19
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=39.43 E-value=18 Score=29.05 Aligned_cols=52 Identities=31% Similarity=0.147 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--hHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 032260 81 FRLGLASDVGLAAGKALTGYLSG--STAIIADAAHSISDVVLSSIALWSYKAAK 132 (144)
Q Consensus 81 l~isl~inlil~i~eii~G~~sg--SlALlADA~Hsl~Dv~a~~v~l~al~~a~ 132 (144)
..+++++|+++.....-.+--.+ |.++.+|+.|.+.|++.++..+++.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~ 162 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAY 162 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSS
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHH
Confidence 55666666666665555544466 99999999999999998877666555443
No 20
>COG5546 Small integral membrane protein [Function unknown]
Probab=36.57 E-value=34 Score=24.10 Aligned_cols=42 Identities=12% Similarity=0.297 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHH
Q 032260 80 IFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSY 128 (144)
Q Consensus 80 ~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al 128 (144)
..+++ ++..+|.++|-+.|++. .-+-+| +.|.+..++.++++
T Consensus 12 vf~va-il~~ifllAQqll~~fG--I~~~~n----l~d~~n~i~~ll~l 53 (80)
T COG5546 12 VFLVA-ILGAIFLLAQQLLGWFG--IKLPSN----LADIANTIVTLLVL 53 (80)
T ss_pred eehHH-HHHHHHHHHHHHHHHee--eecchh----HHHHHHHHHHHHHH
Confidence 34444 45566666777776664 444444 67777766665544
No 21
>PF08047 His_leader: Histidine operon leader peptide; InterPro: IPR012565 This family consists of the leader peptide of the histidine (his) operon. The his operon contains all the genes necessary for histidine biosynthesis. The region corresponding to the untranslated 5'-end of the transcript, named the his leader region, displays the typical features of the T box transcriptional attenuation mechanism which is involved in the regulation of many amino acid biosynthetic operons [].; GO: 0000105 histidine biosynthetic process
Probab=32.77 E-value=26 Score=17.51 Aligned_cols=8 Identities=50% Similarity=1.012 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 032260 63 GHSHDHHQ 70 (144)
Q Consensus 63 ~~~h~h~~ 70 (144)
++.|+|+|
T Consensus 7 k~hhhhhh 14 (16)
T PF08047_consen 7 KHHHHHHH 14 (16)
T ss_pred cccccccC
Confidence 33344443
No 22
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=32.69 E-value=2e+02 Score=21.01 Aligned_cols=51 Identities=10% Similarity=-0.054 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 032260 87 SDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDK 137 (144)
Q Consensus 87 inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~ 137 (144)
+-.++=++=+++|++.++.....|.+--+.-++..++.++.++.-.|...+
T Consensus 73 l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~~~ 123 (135)
T PF04246_consen 73 LVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRLKK 123 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333444444445555555555558888888888888888888877665443
No 23
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=28.65 E-value=1.9e+02 Score=19.67 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCC
Q 032260 117 DVVLSSIALWSYKAAKAPKDKEHPY 141 (144)
Q Consensus 117 Dv~a~~v~l~al~~a~kp~d~~~pf 141 (144)
-++..+..+++...+.+..+.++|+
T Consensus 80 ~l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 80 WLLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHHCCCeeecCe
Confidence 3444566667777777777777775
No 24
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=28.04 E-value=99 Score=21.93 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=22.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 032260 108 IADAAHSISDVVLSSIALWSYKAAKAPKD 136 (144)
Q Consensus 108 lADA~Hsl~Dv~a~~v~l~al~~a~kp~d 136 (144)
.+|--|-+.|.+..+++.+..+...|.-.
T Consensus 103 ~~d~~Dv~~n~~G~~lG~~l~~~~~~~~~ 131 (133)
T PF04892_consen 103 SFDIDDVLANTLGALLGYLLYRLIRKRWQ 131 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777888888888888887777766443
No 25
>PRK09727 his operon leader peptide; Provisional
Probab=27.56 E-value=31 Score=19.11 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=5.9
Q ss_pred ccCCCCCCCCcc
Q 032260 61 HLGHSHDHHQQL 72 (144)
Q Consensus 61 ~~~~~h~h~~~~ 72 (144)
..+|.|+|+|++
T Consensus 5 qfkhhhhhhhpd 16 (26)
T PRK09727 5 QFKHHHHHHHPD 16 (26)
T ss_pred eeeccccccCCC
Confidence 334555555544
No 26
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=26.33 E-value=1.6e+02 Score=17.85 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 032260 80 IFRLGLASDVGLAAGKALTGYLSG 103 (144)
Q Consensus 80 ~l~isl~inlil~i~eii~G~~sg 103 (144)
.+++.+.+.+++++.=++.|+++|
T Consensus 3 ~LK~~Vy~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 3 TLKIFVYTVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeehhhHHHHHHHHhccccCC
Confidence 355666666777777777887765
No 27
>PF14995 TMEM107: Transmembrane protein
Probab=25.60 E-value=2.1e+02 Score=21.33 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----HHHhchHHHHHhhHHHHHHHHHH
Q 032260 75 KDAENIFRLGLASDVGLAAGKALT-----GYLSGSTAIIADAAHSISDVVLS 121 (144)
Q Consensus 75 ~~~~r~l~isl~inlil~i~eii~-----G~~sgSlALlADA~Hsl~Dv~a~ 121 (144)
+..++.+.+.++++++..++|+++ ...+++.+++.-..|..+-++.+
T Consensus 41 ~~~~~~l~v~L~~s~~~l~ie~~g~~sG~smf~~~~nllsi~~H~~a~v~l~ 92 (124)
T PF14995_consen 41 STADTSLVVALSVSLLCLAIEFWGFFSGVSMFSPTQNLLSICAHASAAVLLS 92 (124)
T ss_pred HHhhhheehHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHH
Confidence 345567778888888888888854 34678899999999988766543
No 28
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.73 E-value=2.4e+02 Score=19.48 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHH
Q 032260 78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALW 126 (144)
Q Consensus 78 ~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~ 126 (144)
.+..|++++..+ +..++.+.+ ++|=.+...+-...+.+.+..+++++
T Consensus 10 N~~~w~ali~~i-~l~vq~~~~-~fg~~~~~~~~~~~i~~~v~~vl~iL 56 (84)
T PF04531_consen 10 NKAFWVALISAI-LLLVQQVGG-LFGWGADFDVLLDQISNIVNAVLTIL 56 (84)
T ss_pred CHHHHHHHHHHH-HHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHH
Confidence 456677665544 444555555 44443334444455555555555444
No 29
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=20.82 E-value=3.8e+02 Score=22.13 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHH---HHhhHHHHHHHHHHHHHHHHHHHhcCC
Q 032260 77 AENIFRLGLASDVGLAAGKALTGYLSGSTAI---IADAAHSISDVVLSSIALWSYKAAKAP 134 (144)
Q Consensus 77 ~~r~l~isl~inlil~i~eii~G~~sgSlAL---lADA~Hsl~Dv~a~~v~l~al~~a~kp 134 (144)
.++.+.....+.+++.++|.+.|.++=-..+ ..-++|.+.-++......+....+.++
T Consensus 95 ~~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l~~~~~~~~Hl~~a~~~~~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 95 IRRRLRWLALLALVLVILQGLLGAWTVLSGLVSPYVVTLHLLLALLIFALLVWLALRARRP 155 (302)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3455666777788888999888877665554 557899998888888887777777666
Done!