Query 032260
Match_columns 144
No_of_seqs 153 out of 1286
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 19:06:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 99.6 2.6E-17 8.7E-22 133.9 0.9 67 78-144 3-69 (283)
2 3j1z_P YIIP, cation efflux fam 99.6 4.3E-17 1.5E-21 134.8 1.2 68 77-144 11-78 (306)
3 3h90_A Ferrous-iron efflux pum 83.6 0.28 9.6E-06 39.1 0.7 50 79-128 112-161 (283)
4 4g1u_A Hemin transport system 78.6 0.84 2.9E-05 38.6 1.9 12 96-107 45-56 (357)
5 3j1z_P YIIP, cation efflux fam 74.1 0.58 2E-05 38.0 -0.3 50 80-129 122-171 (306)
6 2yjp_A Putative ABC transporte 57.4 2.2 7.5E-05 32.6 0.0 9 63-71 2-10 (291)
7 4dve_A Biotin transporter BIOY 55.4 9.9 0.00034 29.5 3.5 12 76-87 16-27 (198)
8 3un6_A Hypothetical protein sa 52.4 3 0.0001 33.0 0.0 7 64-70 3-9 (341)
9 3rlb_A THIT; S-component, ECF 43.6 13 0.00044 28.7 2.4 9 78-86 19-27 (192)
10 3cio_A ETK, tyrosine-protein k 32.0 9.7 0.00033 30.3 0.0 8 108-115 84-91 (299)
11 2c07_A 3-oxoacyl-(acyl-carrier 31.5 10 0.00034 29.2 0.0 8 63-70 2-9 (285)
12 2ivd_A PPO, PPOX, protoporphyr 26.4 3 0.0001 34.3 -4.1 25 63-87 2-26 (478)
13 2yln_A Putative ABC transporte 25.8 14 0.00049 27.9 0.0 6 63-68 2-7 (283)
14 2c0d_A Thioredoxin peroxidase 25.7 15 0.0005 27.9 0.0 7 63-69 2-8 (221)
15 2krk_A 26S protease regulatory 25.1 50 0.0017 21.5 2.6 10 63-72 2-11 (86)
16 2zyd_A 6-phosphogluconate dehy 23.6 13 0.00044 31.9 -0.7 10 63-72 2-11 (480)
17 3arc_I Photosystem II reaction 21.5 1.3E+02 0.0045 17.5 3.8 24 80-103 3-26 (38)
18 4b1m_A Levanase; hydrolase, CB 20.0 22 0.00075 26.3 0.0 6 63-68 2-7 (185)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=99.63 E-value=2.6e-17 Score=133.95 Aligned_cols=67 Identities=24% Similarity=0.247 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 78 ~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
+|.+++++++|++++++|+++|+++||+||++||+||++|+++.+++++++++++||+|++|||||+
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~ 69 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHG 69 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcch
Confidence 5789999999999999999999999999999999999999999999999999999999999999996
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=99.62 E-value=4.3e-17 Score=134.81 Aligned_cols=68 Identities=29% Similarity=0.384 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260 77 AENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144 (144)
Q Consensus 77 ~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~ 144 (144)
.|++.++++++|++++++|+++|+++||+||+|||+||++|+++.+++++++++++||+|++|||||+
T Consensus 11 vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~ 78 (306)
T 3j1z_P 11 VKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHG 78 (306)
T ss_dssp SSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchh
Confidence 56788999999999999999999999999999999999999999999999999999999999999996
No 3
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=83.63 E-value=0.28 Score=39.09 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHH
Q 032260 79 NIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSY 128 (144)
Q Consensus 79 r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al 128 (144)
-...+++++|.+++..+.-.+--.+|.++.+|+.|.++|+++++..++++
T Consensus 112 ~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~ 161 (283)
T 3h90_A 112 IVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLAL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888887777777778899999999999999999876655544
No 4
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=78.58 E-value=0.84 Score=38.57 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=3.6
Q ss_pred HHHHHHhchHHH
Q 032260 96 ALTGYLSGSTAI 107 (144)
Q Consensus 96 ii~G~~sgSlAL 107 (144)
++.++..|+..+
T Consensus 45 ~~~sl~~G~~~i 56 (357)
T 4g1u_A 45 ALGSANMGALSL 56 (357)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHhCCCCC
Confidence 344555565544
No 5
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=74.07 E-value=0.58 Score=37.97 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032260 80 IFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYK 129 (144)
Q Consensus 80 ~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~ 129 (144)
...++++.++.+...+--.+--.+|.++.+|+.|..+|++.++..++++-
T Consensus 122 v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~ 171 (306)
T 3j1z_P 122 VSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALV 171 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTS
T ss_pred hhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHH
Confidence 34445555555555555555667899999999999999988766555443
No 6
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=57.45 E-value=2.2 Score=32.62 Aligned_cols=9 Identities=56% Similarity=1.228 Sum_probs=0.0
Q ss_pred CCCCCCCCc
Q 032260 63 GHSHDHHQQ 71 (144)
Q Consensus 63 ~~~h~h~~~ 71 (144)
||+|+|||+
T Consensus 2 ~~~~~~~~~ 10 (291)
T 2yjp_A 2 GHHHHHHHH 10 (291)
T ss_dssp ---------
T ss_pred Ccccccccc
Confidence 444433333
No 7
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=55.37 E-value=9.9 Score=29.52 Aligned_cols=12 Identities=0% Similarity=0.066 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHH
Q 032260 76 DAENIFRLGLAS 87 (144)
Q Consensus 76 ~~~r~l~isl~i 87 (144)
+.+....+++..
T Consensus 16 k~r~l~~~alfa 27 (198)
T 4dve_A 16 KVKTLTYSAFMT 27 (198)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 8
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=52.45 E-value=3 Score=32.97 Aligned_cols=7 Identities=57% Similarity=1.028 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 032260 64 HSHDHHQ 70 (144)
Q Consensus 64 ~~h~h~~ 70 (144)
.+|+|||
T Consensus 3 ~~~~~~~ 9 (341)
T 3un6_A 3 SSHHHHH 9 (341)
T ss_dssp -------
T ss_pred Ccccccc
Confidence 3343333
No 9
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=43.60 E-value=13 Score=28.67 Aligned_cols=9 Identities=0% Similarity=0.113 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 032260 78 ENIFRLGLA 86 (144)
Q Consensus 78 ~r~l~isl~ 86 (144)
++....++.
T Consensus 19 ~~lv~~all 27 (192)
T 3rlb_A 19 RLLTEIAFM 27 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 10
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=32.03 E-value=9.7 Score=30.29 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=3.6
Q ss_pred HHhhHHHH
Q 032260 108 IADAAHSI 115 (144)
Q Consensus 108 lADA~Hsl 115 (144)
+++++.++
T Consensus 84 ~~Ea~r~l 91 (299)
T 3cio_A 84 AVEAVRAL 91 (299)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 11
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=31.52 E-value=10 Score=29.24 Aligned_cols=8 Identities=63% Similarity=1.331 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 032260 63 GHSHDHHQ 70 (144)
Q Consensus 63 ~~~h~h~~ 70 (144)
+|+|+|||
T Consensus 2 ~~~~~~~~ 9 (285)
T 2c07_A 2 GHHHHHHH 9 (285)
T ss_dssp --------
T ss_pred Cccccccc
Confidence 34343333
No 12
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=26.35 E-value=3 Score=34.26 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=4.2
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHH
Q 032260 63 GHSHDHHQQLSGKDAENIFRLGLAS 87 (144)
Q Consensus 63 ~~~h~h~~~~~~~~~~r~l~isl~i 87 (144)
+|+|+|||+.......+++.++-.+
T Consensus 2 ~~~~~~~~~~~~~~~~~v~iiG~G~ 26 (478)
T 2ivd_A 2 DHHHHHHHHMPRTTGMNVAVVGGGI 26 (478)
T ss_dssp ---------------CCEEEECCBH
T ss_pred CccccccccCCCCCCCcEEEECCCH
Confidence 3444444444444344444444333
No 13
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=25.83 E-value=14 Score=27.86 Aligned_cols=6 Identities=67% Similarity=1.376 Sum_probs=0.0
Q ss_pred CCCCCC
Q 032260 63 GHSHDH 68 (144)
Q Consensus 63 ~~~h~h 68 (144)
+|+|+|
T Consensus 2 ~~~~~~ 7 (283)
T 2yln_A 2 GHHHHH 7 (283)
T ss_dssp ------
T ss_pred Cccccc
Confidence 344433
No 14
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=25.69 E-value=15 Score=27.90 Aligned_cols=7 Identities=71% Similarity=1.464 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 032260 63 GHSHDHH 69 (144)
Q Consensus 63 ~~~h~h~ 69 (144)
||+|+|+
T Consensus 2 ~~~~~~~ 8 (221)
T 2c0d_A 2 GHHHHHH 8 (221)
T ss_dssp -------
T ss_pred Ccccccc
Confidence 3444333
No 15
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=25.08 E-value=50 Score=21.53 Aligned_cols=10 Identities=50% Similarity=0.996 Sum_probs=4.6
Q ss_pred CCCCCCCCcc
Q 032260 63 GHSHDHHQQL 72 (144)
Q Consensus 63 ~~~h~h~~~~ 72 (144)
||+|+|+.++
T Consensus 2 ~~~~~~~~~P 11 (86)
T 2krk_A 2 GHHHHHHSHP 11 (86)
T ss_dssp CCSSCCCCCC
T ss_pred CCCCCCCCCc
Confidence 5555444333
No 16
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=23.60 E-value=13 Score=31.91 Aligned_cols=10 Identities=50% Similarity=1.042 Sum_probs=0.0
Q ss_pred CCCCCCCCcc
Q 032260 63 GHSHDHHQQL 72 (144)
Q Consensus 63 ~~~h~h~~~~ 72 (144)
+|+|+|||+|
T Consensus 2 ~~~~~~~~~~ 11 (480)
T 2zyd_A 2 GHHHHHHHHH 11 (480)
T ss_dssp ----------
T ss_pred Cccccccccc
Confidence 4444444333
No 17
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=21.54 E-value=1.3e+02 Score=17.52 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 032260 80 IFRLGLASDVGLAAGKALTGYLSG 103 (144)
Q Consensus 80 ~l~isl~inlil~i~eii~G~~sg 103 (144)
.+.+.+.+-+++++.=++.|++++
T Consensus 3 tLKi~Vy~vV~ffvsLFiFGfLsn 26 (38)
T 3arc_I 3 TLKITVYIVVTFFVLLFVFGFLSG 26 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEeeehhHHHHHHHHHHccccCC
Confidence 355666666777777777787765
No 18
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=20.01 E-value=22 Score=26.31 Aligned_cols=6 Identities=67% Similarity=1.376 Sum_probs=0.0
Q ss_pred CCCCCC
Q 032260 63 GHSHDH 68 (144)
Q Consensus 63 ~~~h~h 68 (144)
+|+|+|
T Consensus 2 ~~~~~~ 7 (185)
T 4b1m_A 2 GHHHHH 7 (185)
T ss_dssp ------
T ss_pred Cccccc
Confidence 333333
Done!