Query 032263
Match_columns 144
No_of_seqs 148 out of 1202
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 19:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 4.6E-26 1.6E-30 151.8 5.5 62 55-116 2-63 (63)
2 3igm_B PF14_0633 protein; AP2 94.4 0.019 6.6E-07 39.1 2.2 28 51-81 3-31 (77)
3 1u3e_M HNH homing endonuclease 93.1 0.0028 9.7E-08 47.9 -4.3 38 56-97 109-146 (174)
4 1z1b_A Integrase; protein-DNA 80.0 2.1 7.2E-05 33.5 4.6 41 58-103 15-55 (356)
5 3jtz_A Integrase; four strande 70.2 9.2 0.00031 25.7 5.1 44 59-103 28-75 (88)
6 3ju0_A Phage integrase; four s 53.2 21 0.00073 24.8 4.7 48 59-107 28-80 (108)
7 1b69_A Protein (integrase); in 49.2 16 0.00054 24.1 3.2 29 51-81 7-35 (69)
8 1x60_A Sporulation-specific N- 36.9 18 0.00061 22.8 1.9 22 80-101 47-68 (79)
9 2ftc_I Mitochondrial ribosomal 36.9 48 0.0016 23.5 4.4 35 66-104 79-114 (118)
10 1uta_A FTSN, MSGA, cell divisi 34.3 23 0.00077 22.6 2.1 23 79-101 46-68 (81)
11 2bn8_A CEDA, cell division act 27.5 33 0.0011 23.1 2.1 38 54-95 38-75 (87)
12 3r8s_M 50S ribosomal protein L 21.5 92 0.0032 22.6 3.7 33 67-104 92-125 (136)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=4.6e-26 Score=151.76 Aligned_cols=62 Identities=74% Similarity=1.296 Sum_probs=58.9
Q ss_pred ceeeeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCcccc
Q 032263 55 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLI 116 (144)
Q Consensus 55 gyrGV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD~Aa~~l~G~~A~~NFP~~~ 116 (144)
+|+||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.++.+|||+++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 69999988899999999998877899999999999999999999999999999999999864
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=94.42 E-value=0.019 Score=39.12 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=22.7
Q ss_pred CCCCceeeeEECC-CCeEEEEEeccCCCCeee
Q 032263 51 HVRVNYRGVRKRP-WGKFAAEIRDRKKNGSRL 81 (144)
Q Consensus 51 ~~~SgyrGV~~~~-~gkW~A~I~~~~~~gk~i 81 (144)
..+|+|+||+|.+ .+.|.|+-.. +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence 4689999999887 6999999988 56554
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=93.14 E-value=0.0028 Score=47.86 Aligned_cols=38 Identities=8% Similarity=-0.106 Sum_probs=29.6
Q ss_pred eeeeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHH
Q 032263 56 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYD 97 (144)
Q Consensus 56 yrGV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD 97 (144)
++||.+...++|.+.|.. + +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence 467765224678899988 5 5678999999999999974
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=80.03 E-value=2.1 Score=33.48 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=31.4
Q ss_pred eeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHHHHHHHh
Q 032263 58 GVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKM 103 (144)
Q Consensus 58 GV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD~Aa~~l 103 (144)
||++++.|.|+.++.. +||++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5777778899988765 788899996 8888887776655444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=70.21 E-value=9.2 Score=25.69 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=30.0
Q ss_pred eEECCCC--eEEEEEeccCCCCeeeccCCCC--CHHHHHHHHHHHHHHh
Q 032263 59 VRKRPWG--KFAAEIRDRKKNGSRLWLGTYD--TPEGAALAYDRAAFKM 103 (144)
Q Consensus 59 V~~~~~g--kW~A~I~~~~~~gk~i~LGtF~--t~EeAA~AYD~Aa~~l 103 (144)
|...++| .|+-+.+...+ .+++-||.|+ |+++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk-~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGK-ESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTE-EEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCe-EEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3445543 59988887332 3567899997 5888888777766555
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=53.21 E-value=21 Score=24.78 Aligned_cols=48 Identities=27% Similarity=0.254 Sum_probs=30.6
Q ss_pred eEECCCC--eEEEEEeccCCCCeeeccCCCC--CHHHHHHHHHHHHHHh-cCCC
Q 032263 59 VRKRPWG--KFAAEIRDRKKNGSRLWLGTYD--TPEGAALAYDRAAFKM-RGSK 107 (144)
Q Consensus 59 V~~~~~g--kW~A~I~~~~~~gk~i~LGtF~--t~EeAA~AYD~Aa~~l-~G~~ 107 (144)
|...++| .|.-+.+...+ .+++-||.|+ |+.+|....+.+...+ .|.+
T Consensus 28 L~V~psG~K~w~~rYr~~GK-~~~~~LG~yp~~SLa~AR~~a~~~r~~l~~GiD 80 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKK-QRLLALGVYPAVSLADARQRRDEAKKLLAAGID 80 (108)
T ss_dssp EEECTTSCEEEEEEEEETTE-EEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCCEEEEEEEEEcCc-eEEEecCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 3445544 59888887332 2457799997 4788877776655544 4444
No 7
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=49.25 E-value=16 Score=24.07 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=21.5
Q ss_pred CCCCceeeeEECCCCeEEEEEeccCCCCeee
Q 032263 51 HVRVNYRGVRKRPWGKFAAEIRDRKKNGSRL 81 (144)
Q Consensus 51 ~~~SgyrGV~~~~~gkW~A~I~~~~~~gk~i 81 (144)
.+..-+.|+++++.|+|+.++.+.. |++.
T Consensus 7 kgr~L~~GesqR~dG~Y~yry~d~~--Gkr~ 35 (69)
T 1b69_A 7 RGRILKTGESQRKDGRYLYKYIDSF--GEPQ 35 (69)
T ss_dssp SSSCCCTTEEECSSSCEEEEEECTT--SSEE
T ss_pred CCCccCCCeEEccCCcEEEEEEcCC--CCEE
Confidence 3345678899999999999998843 4443
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=36.90 E-value=18 Score=22.83 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=18.1
Q ss_pred eeccCCCCCHHHHHHHHHHHHH
Q 032263 80 RLWLGTYDTPEGAALAYDRAAF 101 (144)
Q Consensus 80 ~i~LGtF~t~EeAA~AYD~Aa~ 101 (144)
++++|.|.+.++|..+.+....
T Consensus 47 RV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 47 KVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHH
Confidence 5788999999999988776554
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=36.87 E-value=48 Score=23.52 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=27.6
Q ss_pred eEEEEEeccCCCCeeec-cCCCCCHHHHHHHHHHHHHHhc
Q 032263 66 KFAAEIRDRKKNGSRLW-LGTYDTPEGAALAYDRAAFKMR 104 (144)
Q Consensus 66 kW~A~I~~~~~~gk~i~-LGtF~t~EeAA~AYD~Aa~~l~ 104 (144)
-|.|+|.. |+-++ ++...+++.|..|...|+.+|=
T Consensus 79 ~wva~Vk~----G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKA----GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECC----CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 39999976 45554 6666889999999999998873
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=34.27 E-value=23 Score=22.65 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=18.7
Q ss_pred eeeccCCCCCHHHHHHHHHHHHH
Q 032263 79 SRLWLGTYDTPEGAALAYDRAAF 101 (144)
Q Consensus 79 k~i~LGtF~t~EeAA~AYD~Aa~ 101 (144)
-++.+|-|.+.++|..+.+....
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 36888999999999988776655
No 11
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=27.54 E-value=33 Score=23.11 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=25.7
Q ss_pred CceeeeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHH
Q 032263 54 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALA 95 (144)
Q Consensus 54 SgyrGV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~A 95 (144)
-+|+.|..-+ |||+|.+.. .-.-.---.|..+|.|.+=
T Consensus 38 d~frdvw~lr-gkyvafvl~---ge~frrspafsvpesaqrw 75 (87)
T 2bn8_A 38 DSFRDVWMLR-GKYVAFVLM---GESFLRSPAFTVPESAQRW 75 (87)
T ss_dssp TTCTTEEEET-TEEEEBCCS---SSCCCBCCCBSSHHHHHHH
T ss_pred ccchhheeec-cceEEEEEe---chhhccCCccCCcHHHHHH
Confidence 4788887655 999999877 2122223567888877653
No 12
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=21.54 E-value=92 Score=22.62 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=26.1
Q ss_pred EEEEEeccCCCCeeec-cCCCCCHHHHHHHHHHHHHHhc
Q 032263 67 FAAEIRDRKKNGSRLW-LGTYDTPEGAALAYDRAAFKMR 104 (144)
Q Consensus 67 W~A~I~~~~~~gk~i~-LGtF~t~EeAA~AYD~Aa~~l~ 104 (144)
|.|+|.. |+-++ ++. .+++.|..|...|+.+|=
T Consensus 92 wva~Vk~----G~ilfEi~g-~~~~~A~eAlr~a~~KLP 125 (136)
T 3r8s_M 92 WVALIQP----GKVLYEMDG-VPEELAREAFKLAAAKLP 125 (136)
T ss_dssp EEEEECT----TCEEEEEES-SCHHHHHHHHHHHHTTCS
T ss_pred EEEEECC----CCEEEEEeC-CCHHHHHHHHHHHHhcCC
Confidence 9999976 45555 655 489999999999988764
Done!