BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032264
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
 pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
 pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
 pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
          Length = 632

 Score = 28.5 bits (62), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 56  TEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFR-GAAF--IYERFVR 98
           TE++L P++++I +  S+ L L A + +P F  GA F  +Y   +R
Sbjct: 319 TELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMR 364


>pdb|2QM0|A Chain A, Crystal Structure Of Bes Protein From Bacillus Cereus
 pdb|2QM0|B Chain B, Crystal Structure Of Bes Protein From Bacillus Cereus
          Length = 275

 Score = 27.3 bits (59), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 22  LYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLE 65
            Y    SV++ ++P K D + W      ++F T  E  L+P +E
Sbjct: 101 CYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIE 144


>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
           Bacillus Halodenitrificans
          Length = 202

 Score = 26.6 bits (57), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 97  VRQQIRQYRGGKDHHQHQHRKSSPTGTGKGKNKFVDFIMPKKGEHEAY 144
           +R  +R   GG  +H    +  SP G GK   +  D I  K G  E +
Sbjct: 68  IRTAVRNNGGGHANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKF 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,893,717
Number of Sequences: 62578
Number of extensions: 201858
Number of successful extensions: 1433
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1411
Number of HSP's gapped (non-prelim): 28
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)