Query 032264
Match_columns 144
No_of_seqs 109 out of 643
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1725 Protein involved in me 100.0 3.4E-31 7.3E-36 208.0 9.8 111 4-114 50-160 (186)
2 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 6.9E-31 1.5E-35 185.0 10.3 92 10-101 3-94 (94)
3 KOG1726 HVA22/DP1 gene product 100.0 2.4E-30 5.1E-35 208.1 8.4 105 12-116 2-108 (225)
4 COG5052 YOP1 Protein involved 99.9 6.9E-23 1.5E-27 159.6 7.5 108 14-121 61-170 (186)
5 KOG1726 HVA22/DP1 gene product 89.8 4.4 9.5E-05 33.2 9.6 112 4-116 41-175 (225)
6 PRK11877 psaI photosystem I re 41.1 27 0.00059 20.9 2.1 20 9-28 8-27 (38)
7 CHL00186 psaI photosystem I su 40.4 24 0.00051 21.0 1.7 20 9-28 4-23 (36)
8 TIGR03052 PS_I_psaI photosyste 29.9 22 0.00047 20.4 0.4 19 10-28 2-20 (31)
9 PF14975 DUF4512: Domain of un 29.7 45 0.00098 23.5 2.1 18 90-107 12-29 (88)
10 COG5415 Predicted integral mem 26.3 2.6E+02 0.0057 23.1 6.1 75 38-117 36-110 (251)
11 KOG0365 Beta subunit of farnes 26.1 63 0.0014 28.6 2.7 17 40-56 98-114 (423)
12 PF00796 PSI_8: Photosystem I 24.9 23 0.00049 19.4 -0.1 16 12-27 2-17 (25)
13 PF15061 DUF4538: Domain of un 24.5 62 0.0013 21.1 1.9 26 1-26 1-26 (58)
14 COG2832 Uncharacterized protei 22.0 2.3E+02 0.005 21.1 4.7 46 47-97 6-51 (119)
15 PF11888 DUF3408: Protein of u 20.4 1.5E+02 0.0032 21.9 3.5 45 71-116 89-134 (136)
No 1
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.4e-31 Score=207.95 Aligned_cols=111 Identities=45% Similarity=0.785 Sum_probs=105.8
Q ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhc
Q 032264 4 FWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVL 83 (144)
Q Consensus 4 ~~~ll~~l~~l~~~~vg~lyPay~S~kaL~~~~~~~~~~WL~YWiv~a~~~~~E~~~~~il~wiPfY~~iKl~flvwL~~ 83 (144)
+|-+++..+.++|+++|++||+|+|++|+|++++.|+++||+||++||++.++|...+.+++|+|+||++|++|++||.+
T Consensus 50 v~l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~l 129 (186)
T KOG1725|consen 50 VYLLFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVL 129 (186)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHhHHHhhhcccchhhhh
Q 032264 84 PQFRGAAFIYERFVRQQIRQYRGGKDHHQHQ 114 (144)
Q Consensus 84 P~~~GA~~lY~~~i~P~l~~~e~~ID~~l~~ 114 (144)
|+++||..+|+++++|++.++..++|+..+.
T Consensus 130 P~~~Ga~~iY~~~vrp~~~~~~~~~~~~~~~ 160 (186)
T KOG1725|consen 130 PQFNGAAIIYNHIVRPFFLKHSREIDDIEDA 160 (186)
T ss_pred cCCCCceeeechhhhhhhhhhhhhhhhhhhc
Confidence 9999999999999999999999999988754
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.97 E-value=6.9e-31 Score=184.95 Aligned_cols=92 Identities=43% Similarity=0.904 Sum_probs=89.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhcCCCCcH
Q 032264 10 GVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGA 89 (144)
Q Consensus 10 ~l~~l~~~~vg~lyPay~S~kaL~~~~~~~~~~WL~YWiv~a~~~~~E~~~~~il~wiPfY~~iKl~flvwL~~P~~~GA 89 (144)
...+++|+++|++||+|+|+|+++++++++.++||+||+++|+++++|.+++.+++|+|+|+++|+++++||.+|+++||
T Consensus 3 ~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~~~Ga 82 (94)
T PF03134_consen 3 FIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQFQGA 82 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCCCCcH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHH
Q 032264 90 AFIYERFVRQQI 101 (144)
Q Consensus 90 ~~lY~~~i~P~l 101 (144)
+++|+++++|.+
T Consensus 83 ~~iy~~~i~P~~ 94 (94)
T PF03134_consen 83 EYIYDKFIRPFL 94 (94)
T ss_pred HHHHHHHccccC
Confidence 999999999974
No 3
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=99.96 E-value=2.4e-30 Score=208.13 Aligned_cols=105 Identities=28% Similarity=0.586 Sum_probs=99.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhC--CChhhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhcCCCCcH
Q 032264 12 HSLAGPVLMLLYPLYASVVAIES--PSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGA 89 (144)
Q Consensus 12 ~~l~~~~vg~lyPay~S~kaL~~--~~~~~~~~WL~YWiv~a~~~~~E~~~~~il~wiPfY~~iKl~flvwL~~P~~~GA 89 (144)
.++...++|++||||+|+|++++ ++.++++.|++||||+|+++++|.++|.+++|+|||+++|++|++||.+|.++|+
T Consensus 2 ~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G~ 81 (225)
T KOG1726|consen 2 IRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKGA 81 (225)
T ss_pred eehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCcc
Confidence 35678899999999999999999 6678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhhcccchhhhhcc
Q 032264 90 AFIYERFVRQQIRQYRGGKDHHQHQHR 116 (144)
Q Consensus 90 ~~lY~~~i~P~l~~~e~~ID~~l~~~r 116 (144)
.++|+++++|++.+||++||+.+.+-|
T Consensus 82 ~~vY~~f~~p~ls~~E~eid~~l~~~k 108 (225)
T KOG1726|consen 82 SYVYRKFLRPFLSKHEEEIDRMLVEAK 108 (225)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999998733
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.88 E-value=6.9e-23 Score=159.58 Aligned_cols=108 Identities=25% Similarity=0.479 Sum_probs=100.9
Q ss_pred HHHhHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhcCCCCcHHHHH
Q 032264 14 LAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIY 93 (144)
Q Consensus 14 l~~~~vg~lyPay~S~kaL~~~~~~~~~~WL~YWiv~a~~~~~E~~~~~il~wiPfY~~iKl~flvwL~~P~~~GA~~lY 93 (144)
++.+++|+..|++.|.+++++.++.|++||++||+|+++.+++|.+...+++|+|+||..|.+|++|+..|+++||..+|
T Consensus 61 ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~prt~GA~~IY 140 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRTEGARIIY 140 (186)
T ss_pred HHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCceeeeH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhhcc-cchhhhh-ccCCCCC
Q 032264 94 ERFVRQQIRQYRGG-KDHHQHQ-HRKSSPT 121 (144)
Q Consensus 94 ~~~i~P~l~~~e~~-ID~~l~~-~r~~~~~ 121 (144)
+++++|.+++|.-+ ||+.+.+ +|+|.++
T Consensus 141 ~~~i~p~~s~~~~~~IektV~~~~~A~a~~ 170 (186)
T COG5052 141 DDIIAPDVSDHGFRTIEKTVKNGTKASAAV 170 (186)
T ss_pred HhhccccccHHHHHHHHHHHHhhccccHHH
Confidence 99999999987766 9998855 7777433
No 5
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=89.78 E-value=4.4 Score=33.19 Aligned_cols=112 Identities=7% Similarity=0.047 Sum_probs=90.0
Q ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHhh--------CC---------------ChhhhHHHHHHHHHHHHHHHHHHHh
Q 032264 4 FWNLIYGVHSLAGPVLMLLYPLYASVVAIE--------SP---------------SKVDDEQWLAYWILYSFLTLTEMVL 60 (144)
Q Consensus 4 ~~~ll~~l~~l~~~~vg~lyPay~S~kaL~--------~~---------------~~~~~~~WL~YWiv~a~~~~~E~~~ 60 (144)
++.++..+..+.-.++. -.|.|.=+|.+- ++ ..++...-+.+|....++..++.+.
T Consensus 41 v~A~~t~~e~~~d~~ls-w~P~Y~e~Kl~fv~wL~~p~t~G~~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~ 119 (225)
T KOG1726|consen 41 VFAALTVFETLTDFLLS-WFPFYSEFKLAFVIWLLSPATKGASYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSIL 119 (225)
T ss_pred HHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHhhccccccCccHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666 677777777652 11 1245678899999999999999999
Q ss_pred hhhhcccchhHHHHHHHHHHHhcCCCCcHHHHHHHHHHhHHHhhhcccchhhhhcc
Q 032264 61 QPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQHR 116 (144)
Q Consensus 61 ~~il~wiPfY~~iKl~flvwL~~P~~~GA~~lY~~~i~P~l~~~e~~ID~~l~~~r 116 (144)
...+.+-+.|-.=+.....|...|+.+++...++.-..|-.+.....+-+.+++..
T Consensus 120 ~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 175 (225)
T KOG1726|consen 120 KRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKKAPDLDVLENEV 175 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCccccccccCCcccchhhh
Confidence 99999999999999999999999999999999999999988887777777776633
No 6
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=41.14 E-value=27 Score=20.93 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=17.1
Q ss_pred HhHHHHHHhHHHHHHHHHHH
Q 032264 9 YGVHSLAGPVLMLLYPLYAS 28 (144)
Q Consensus 9 ~~l~~l~~~~vg~lyPay~S 28 (144)
..|.++..+++|++.||..-
T Consensus 8 s~LPsI~VPlVGlvfPai~M 27 (38)
T PRK11877 8 SWLPWIFVPLVGWVFPAVFM 27 (38)
T ss_pred HhCchHHHHHHHHHHHHHHH
Confidence 56889999999999999653
No 7
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=40.38 E-value=24 Score=20.98 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.7
Q ss_pred HhHHHHHHhHHHHHHHHHHH
Q 032264 9 YGVHSLAGPVLMLLYPLYAS 28 (144)
Q Consensus 9 ~~l~~l~~~~vg~lyPay~S 28 (144)
..+.++..+++|++.||..-
T Consensus 4 s~LPsI~VPlVGlvfPai~M 23 (36)
T CHL00186 4 SNLPSILVPLVGLVFPAIAM 23 (36)
T ss_pred ccCchhHHhHHHHHHHHHHH
Confidence 45788999999999999754
No 8
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=29.92 E-value=22 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=15.0
Q ss_pred hHHHHHHhHHHHHHHHHHH
Q 032264 10 GVHSLAGPVLMLLYPLYAS 28 (144)
Q Consensus 10 ~l~~l~~~~vg~lyPay~S 28 (144)
.+.++..+++|++.||..-
T Consensus 2 ~LPsI~VPlVglvfPai~M 20 (31)
T TIGR03052 2 WLPSIFVPLVGLVFPAVFM 20 (31)
T ss_pred CCceeehhHHHHHHHHHHH
Confidence 3567788999999999654
No 9
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=29.70 E-value=45 Score=23.50 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=14.4
Q ss_pred HHHHHHHHHhHHHhhhcc
Q 032264 90 AFIYERFVRQQIRQYRGG 107 (144)
Q Consensus 90 ~~lY~~~i~P~l~~~e~~ 107 (144)
.+||++||+|++-++-+.
T Consensus 12 LwIykkFlqP~i~~~~sp 29 (88)
T PF14975_consen 12 LWIYKKFLQPYIYPFWSP 29 (88)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 368999999998777664
No 10
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=26.32 E-value=2.6e+02 Score=23.10 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhcCCCCcHHHHHHHHHHhHHHhhhcccchhhhhccC
Q 032264 38 VDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQHRK 117 (144)
Q Consensus 38 ~~~~~WL~YWiv~a~~~~~E~~~~~il~wiPfY~~iKl~flvwL~~P~~~GA~~lY~~~i~P~l~~~e~~ID~~l~~~r~ 117 (144)
....+|+.=-.|+++-..+-.. +.+..--|.|.-.-.+.+.-|. .||-|+++-.+.-+.+.+-.++-+.++++|+
T Consensus 36 s~l~~~~~r~tv~slAl~~l~~-S~iy~~~~~y~~~~~It~~llg----s~slymfrwal~~lye~r~~r~~~~L~kLra 110 (251)
T COG5415 36 SILSQWQSRLTVYSLALTVLAL-SYIYWEYHGYRPYLVITALLLG----SGSLYMFRWALTKLYEFRNNRRLRKLAKLRA 110 (251)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH-HHHHhhccccchhHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4567899888888876655433 2222223555322222222221 5899999999988888888888888887765
No 11
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=63 Score=28.61 Aligned_cols=17 Identities=41% Similarity=1.028 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032264 40 DEQWLAYWILYSFLTLT 56 (144)
Q Consensus 40 ~~~WL~YWiv~a~~~~~ 56 (144)
-+.|++||++=++-.+-
T Consensus 98 SR~Wm~YWil~sl~lL~ 114 (423)
T KOG0365|consen 98 SRPWMCYWILNSLALLD 114 (423)
T ss_pred CcchhHHHHHHHHHHhc
Confidence 37899999998875443
No 12
>PF00796 PSI_8: Photosystem I reaction centre subunit VIII; InterPro: IPR001302 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. This entry represents subunit VIII (PsaI) of the photosystem I (PSI) reaction centre. PSI is located, along with photosystem II (PSII), in the thylakoid photosynthetic membranes of plants, green algae and cyanobacteria. The crystal structure of PSI from the thermophilic cyanobacterium Synechococcus elongatus (Thermosynechococcus elongatus) has 12 protein subunits and 127 cofactors comprising 96 chlorophylls, 2 phylloquinones, 3 4Fe4S clusters, 22 carotenoids, 4 lipids, and a putative calcium ion []. PsaI consists of a single transmembrane helix, and has a crucial role in aiding normal structural organisation of PsaL within the PSI complex and the absence of PsaI alters PsaL organisation, leading to a small, but physiologically significant, defect in PSI function []. PsaL encodes a subunit of PSI and is necessary for trimerisation of PSI. PsaL may constitute the trimer-forming domain in the structure of PSI []. ; GO: 0015979 photosynthesis, 0009522 photosystem I; PDB: 2WSF_I 2O01_I 3LW5_I 2WSE_I 2WSC_I 1JB0_I 3PCQ_I.
Probab=24.87 E-value=23 Score=19.40 Aligned_cols=16 Identities=31% Similarity=0.521 Sum_probs=12.3
Q ss_pred HHHHHhHHHHHHHHHH
Q 032264 12 HSLAGPVLMLLYPLYA 27 (144)
Q Consensus 12 ~~l~~~~vg~lyPay~ 27 (144)
.++..+++|.+.||..
T Consensus 2 Psi~VPlvGlvfPai~ 17 (25)
T PF00796_consen 2 PSIFVPLVGLVFPAIA 17 (25)
T ss_dssp CCCCCHHHHCHHHHHH
T ss_pred CeEEeehHHHHhHHHH
Confidence 4556788999999865
No 13
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=24.51 E-value=62 Score=21.14 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=20.2
Q ss_pred CchHHHHHHhHHHHHHhHHHHHHHHH
Q 032264 1 MSRFWNLIYGVHSLAGPVLMLLYPLY 26 (144)
Q Consensus 1 ~~~~~~ll~~l~~l~~~~vg~lyPay 26 (144)
|++-|-....++.+.+.+-..+||.+
T Consensus 1 m~rg~r~~~~~ggfVg~iG~a~Ypi~ 26 (58)
T PF15061_consen 1 MLRGWRYALFVGGFVGLIGAALYPIY 26 (58)
T ss_pred CCccccchhhHHHHHHHHHHHHhhhh
Confidence 67778777777788877777888875
No 14
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=2.3e+02 Score=21.07 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 032264 47 WILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFV 97 (144)
Q Consensus 47 Wiv~a~~~~~E~~~~~il~wiPfY~~iKl~flvwL~~P~~~GA~~lY~~~i 97 (144)
|++.|+..+.--+.+-++..+|-=.++=+...++. +++...++-++
T Consensus 6 ~i~iGfl~l~LGIiGifLPlLPTTPFlLLaa~cFa-----RsSpRf~~WLl 51 (119)
T COG2832 6 YIILGFLSLALGIIGIFLPLLPTTPFLLLAAACFA-----RSSPRFHAWLL 51 (119)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHH-----cCCcHHHHHHH
Confidence 67888888888888888888887666655555543 45555555544
No 15
>PF11888 DUF3408: Protein of unknown function (DUF3408); InterPro: IPR021823 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.
Probab=20.40 E-value=1.5e+02 Score=21.85 Aligned_cols=45 Identities=11% Similarity=0.240 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhc-CCCCcHHHHHHHHHHhHHHhhhcccchhhhhcc
Q 032264 71 YSVKLVLAAWLVL-PQFRGAAFIYERFVRQQIRQYRGGKDHHQHQHR 116 (144)
Q Consensus 71 ~~iKl~flvwL~~-P~~~GA~~lY~~~i~P~l~~~e~~ID~~l~~~r 116 (144)
..=|+.-++..+- +...-+.|| +++++..|..|...|+...++.+
T Consensus 89 ~h~~l~~Iv~~ig~~~~si~~yi-dNIL~~Hle~~~eeI~~l~~~~~ 134 (136)
T PF11888_consen 89 THERLSRIVRVIGERKMSISGYI-DNILRHHLEEYREEINELYEKKY 134 (136)
T ss_pred HHHHHHHHHHHHCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446777777777 677888888 77999999999999999987644
Done!