Query 032264
Match_columns 144
No_of_seqs 109 out of 643
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_I Photosystem 1 reaction 38.4 21 0.00071 20.6 2.1 18 10-27 9-26 (38)
2 1iie_A Protein (HLA-DR antigen 16.9 73 0.0025 20.9 2.0 14 39-52 47-60 (75)
3 3bv8_A Tetrahydrodipicolinate 13.1 60 0.0021 21.8 0.8 27 96-122 56-83 (87)
4 2kwt_A Protease NS2-3; NS2 dom 11.7 95 0.0033 17.2 1.2 11 40-50 7-17 (33)
5 4hkr_A Calcium release-activat 11.2 5.5E+02 0.019 19.8 5.8 24 88-111 164-187 (214)
6 1jrj_A Exendin-4; Trp-CAGE, GL 10.9 11 0.00038 21.9 -3.0 15 129-143 21-35 (39)
7 3lw5_I PSI-I, photosystem I re 10.3 18 0.0006 19.9 -2.1 18 11-28 4-21 (30)
8 2wsc_I Photosystem I reaction 8.7 23 0.0008 20.6 -2.1 21 10-30 3-23 (40)
9 2ki9_A Cannabinoid receptor 2; 7.4 2.1E+02 0.0071 14.5 1.5 10 61-70 14-23 (33)
10 2drn_C 24-residues peptide fro 6.3 1.2E+02 0.004 15.8 0.1 15 104-118 7-21 (26)
No 1
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=38.39 E-value=21 Score=20.59 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=15.9
Q ss_pred hHHHHHHhHHHHHHHHHH
Q 032264 10 GVHSLAGPVLMLLYPLYA 27 (144)
Q Consensus 10 ~l~~l~~~~vg~lyPay~ 27 (144)
.+.++..+++|++.||..
T Consensus 9 ~LPsI~VPlVglvfPai~ 26 (38)
T 1jb0_I 9 FLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp THHHHHHHHHHTHHHHHH
T ss_pred hCChhhHhHHHHHHHHHH
Confidence 588999999999999965
No 2
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=16.91 E-value=73 Score=20.88 Aligned_cols=14 Identities=29% Similarity=0.911 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHH
Q 032264 39 DDEQWLAYWILYSF 52 (144)
Q Consensus 39 ~~~~WL~YWiv~a~ 52 (144)
....|+.||.+|-+
T Consensus 47 ~FEsWM~~WLLFeM 60 (75)
T 1iie_A 47 VFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35789999998854
No 3
>3bv8_A Tetrahydrodipicolinate acetyltransferase; PFAM08503, structural genomics, PSI-2, PR structure initiative; 1.75A {Staphylococcus aureus subsp}
Probab=13.08 E-value=60 Score=21.79 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=21.0
Q ss_pred HHHhHHHhhhccc-chhhhhccCCCCCc
Q 032264 96 FVRQQIRQYRGGK-DHHQHQHRKSSPTG 122 (144)
Q Consensus 96 ~i~P~l~~~e~~I-D~~l~~~r~~~~~~ 122 (144)
-|+|+++.++..| |-.+|.-|++|+.-
T Consensus 56 ~i~~~le~n~~~I~dy~iEnDrRNSAIP 83 (87)
T 3bv8_A 56 DWKPFYEAYGSQFEDIEIEMDRRNSAIP 83 (87)
T ss_dssp HHHHHHHHHGGGEEEEEEEECGGGGCCC
T ss_pred HHHHHHHhhhhhccEEEEEecCcccccc
Confidence 4899999998775 56679989887643
No 4
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=11.71 E-value=95 Score=17.22 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=7.6
Q ss_pred hHHHHHHHHHH
Q 032264 40 DEQWLAYWILY 50 (144)
Q Consensus 40 ~~~WL~YWiv~ 50 (144)
..-|++|+++-
T Consensus 7 ~lWWlqYfi~R 17 (33)
T 2kwt_A 7 LIWWLQYFITR 17 (33)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35688888764
No 5
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=11.23 E-value=5.5e+02 Score=19.84 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHhHHHhhhcccchh
Q 032264 88 GAAFIYERFVRQQIRQYRGGKDHH 111 (144)
Q Consensus 88 GA~~lY~~~i~P~l~~~e~~ID~~ 111 (144)
-|-..|++++....+++.++|++.
T Consensus 164 Fa~hFYrsL~~hk~e~~~~~i~el 187 (214)
T 4hkr_A 164 FAIHFYRSLVSHKYEVTVSGIREL 187 (214)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999998888877654
No 6
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=10.88 E-value=11 Score=21.89 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=9.3
Q ss_pred ceeeeecCCCCCCCC
Q 032264 129 KFVDFIMPKKGEHEA 143 (144)
Q Consensus 129 ~~~~~~~~~~~~~~~ 143 (144)
+||+.+++.|+.+++
T Consensus 21 ~fv~wL~~~k~r~~~ 35 (39)
T 1jrj_A 21 LFIEWLKNGGPSSGA 35 (39)
T ss_dssp HHHHHHHTTGGGSSS
T ss_pred HHHHHHHcCCCCCCC
Confidence 566666666655543
No 7
>3lw5_I PSI-I, photosystem I reaction center subunit VIII; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_I*
Probab=10.27 E-value=18 Score=19.86 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=13.8
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 032264 11 VHSLAGPVLMLLYPLYAS 28 (144)
Q Consensus 11 l~~l~~~~vg~lyPay~S 28 (144)
+.++..+++|++.||..-
T Consensus 4 LPsi~VPlVGlvfPai~M 21 (30)
T 3lw5_I 4 LPSLFVPLVGLLFPAVAM 21 (30)
T ss_dssp CCTTTTCCCCCHHHHHHH
T ss_pred CcchHHhHHHHHHHHHHH
Confidence 566777889999998653
No 8
>2wsc_I Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_I* 2wsf_I*
Probab=8.75 E-value=23 Score=20.60 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=15.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHH
Q 032264 10 GVHSLAGPVLMLLYPLYASVV 30 (144)
Q Consensus 10 ~l~~l~~~~vg~lyPay~S~k 30 (144)
.+.++..+++|++.||..-.-
T Consensus 3 ~LPsIfVPlVGLvfPAi~Mal 23 (40)
T 2wsc_I 3 NLPSLFVPLVGLLFPAVAMAS 23 (40)
T ss_dssp CCCTTTTCCCCCHHHHHHHHH
T ss_pred CCcchHHhHHHHHHHHHHHHH
Confidence 356777888999999976543
No 9
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=7.40 E-value=2.1e+02 Score=14.55 Aligned_cols=10 Identities=20% Similarity=0.767 Sum_probs=7.2
Q ss_pred hhhhcccchh
Q 032264 61 QPVLEWIPIW 70 (144)
Q Consensus 61 ~~il~wiPfY 70 (144)
-+++.|.|++
T Consensus 14 ~F~icW~P~~ 23 (33)
T 2ki9_A 14 VLLICWFPVL 23 (33)
T ss_dssp HHTTTSSHHH
T ss_pred HHHHHHhHHH
Confidence 4568899954
No 10
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=6.29 E-value=1.2e+02 Score=15.84 Aligned_cols=15 Identities=13% Similarity=-0.110 Sum_probs=11.4
Q ss_pred hhcccchhhhhccCC
Q 032264 104 YRGGKDHHQHQHRKS 118 (144)
Q Consensus 104 ~e~~ID~~l~~~r~~ 118 (144)
..+.+|..++|-|+|
T Consensus 7 A~RIVdaVi~qvkas 21 (26)
T 2drn_C 7 ASRIVDAVIEQVKAA 21 (26)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 345678888998888
Done!