Query 032264
Match_columns 144
No_of_seqs 109 out of 643
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 19:11:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032264.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032264hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 38.6 21 0.0015 18.5 3.4 22 8-29 10-31 (34)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 25.5 28 0.0021 17.0 2.4 18 13-30 5-22 (27)
3 d1iiea_ a.109.1.1 (A:) Class I 17.5 32 0.0024 21.0 2.0 14 39-52 47-60 (75)
4 d2csba4 a.60.2.4 (A:465-519) T 9.9 62 0.0045 18.0 1.5 22 24-45 1-22 (55)
5 d1m56d_ f.23.8.1 (D:) Bacteria 8.6 1.3E+02 0.0092 16.2 2.4 27 56-82 12-38 (42)
6 d1q90r_ f.23.12.1 (R:) ISP sub 8.4 1.4E+02 0.011 15.7 2.6 18 10-27 17-34 (39)
7 d1qled_ f.23.8.1 (D:) Bacteria 8.2 1.3E+02 0.0097 16.1 2.4 27 56-82 13-39 (43)
8 d2fyuk1 f.23.15.1 (K:1-53) Sub 7.7 1.8E+02 0.013 16.2 3.0 26 44-70 21-48 (53)
9 d2id6a1 a.4.1.9 (A:1-75) Trans 5.8 1.2E+02 0.0089 16.8 1.6 25 92-116 50-74 (75)
10 d2v9va1 a.4.5.35 (A:377-437) C 5.7 89 0.0065 17.6 0.8 26 94-119 4-29 (61)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=38.63 E-value=21 Score=18.49 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=17.5
Q ss_pred HHhHHHHHHhHHHHHHHHHHHH
Q 032264 8 IYGVHSLAGPVLMLLYPLYASV 29 (144)
Q Consensus 8 l~~l~~l~~~~vg~lyPay~S~ 29 (144)
|..+++..+..+|.+||..+-|
T Consensus 10 lltfgt~tg~alg~lypvvkyf 31 (34)
T d2e74d2 10 LLAFGTVTGVALGALYPLVKYF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHhhhhhHHhhc
Confidence 4567888899999999987643
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.48 E-value=28 Score=16.97 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=13.2
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 032264 13 SLAGPVLMLLYPLYASVV 30 (144)
Q Consensus 13 ~l~~~~vg~lyPay~S~k 30 (144)
-+...+.|+.|-||+.+|
T Consensus 5 li~~tl~glf~aayqqyk 22 (27)
T d2e74g1 5 LVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHhc
Confidence 344567788888888775
No 3
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.53 E-value=32 Score=21.01 Aligned_cols=14 Identities=29% Similarity=0.911 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHH
Q 032264 39 DDEQWLAYWILYSF 52 (144)
Q Consensus 39 ~~~~WL~YWiv~a~ 52 (144)
..+.|+.+|.+|-.
T Consensus 47 ~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 47 VFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46789999998854
No 4
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=9.94 E-value=62 Score=17.95 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=15.8
Q ss_pred HHHHHHHHhhCCChhhhHHHHH
Q 032264 24 PLYASVVAIESPSKVDDEQWLA 45 (144)
Q Consensus 24 Pay~S~kaL~~~~~~~~~~WL~ 45 (144)
|+|+|.-.++--+.+...+.|.
T Consensus 1 pgyaslisirgidreraerllk 22 (55)
T d2csba4 1 PGYASLISIRGIDRERAERLLK 22 (55)
T ss_dssp TTHHHHHTSTTCCHHHHHHHHH
T ss_pred CCccceeeeecccHHHHHHHHH
Confidence 7788888888777666655554
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.60 E-value=1.3e+02 Score=16.15 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=14.9
Q ss_pred HHHHhhhhhcccchhHHHHHHHHHHHh
Q 032264 56 TEMVLQPVLEWIPIWYSVKLVLAAWLV 82 (144)
Q Consensus 56 ~E~~~~~il~wiPfY~~iKl~flvwL~ 82 (144)
-|-.++.++.|...-..+-++++++|.
T Consensus 12 QEKTF~gFik~~t~~~i~~i~~liflA 38 (42)
T d1m56d_ 12 QEKTFAGFVRMVTWAAVVIVAALIFLA 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555553
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.37 E-value=1.4e+02 Score=15.65 Aligned_cols=18 Identities=17% Similarity=-0.034 Sum_probs=14.2
Q ss_pred hHHHHHHhHHHHHHHHHH
Q 032264 10 GVHSLAGPVLMLLYPLYA 27 (144)
Q Consensus 10 ~l~~l~~~~vg~lyPay~ 27 (144)
.++.+.....|.++|-.+
T Consensus 17 l~G~~~~~~~g~l~py~~ 34 (39)
T d1q90r_ 17 LAGGAGLPITTLALGYGA 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhhhhhccceeE
Confidence 478888889999998643
No 7
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=8.23 E-value=1.3e+02 Score=16.14 Aligned_cols=27 Identities=4% Similarity=0.073 Sum_probs=15.5
Q ss_pred HHHHhhhhhcccchhHHHHHHHHHHHh
Q 032264 56 TEMVLQPVLEWIPIWYSVKLVLAAWLV 82 (144)
Q Consensus 56 ~E~~~~~il~wiPfY~~iKl~flvwL~ 82 (144)
-|-.++.++.|...-..+-++++++|.
T Consensus 13 QEkTF~gFi~~~t~~~i~~i~~liflA 39 (43)
T d1qled_ 13 QQATFAGFIKGATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666555555566666554
No 8
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.73 E-value=1.8e+02 Score=16.20 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhh--hhcccchh
Q 032264 44 LAYWILYSFLTLTEMVLQP--VLEWIPIW 70 (144)
Q Consensus 44 L~YWiv~a~~~~~E~~~~~--il~wiPfY 70 (144)
+.+|=..|...++- +.|. ++.|+|+|
T Consensus 21 ~~~~G~a~gl~lvy-~TDWklil~yvPyy 48 (53)
T d2fyuk1 21 ASLWGAVGAVGLVW-ATDWRLILDWVPYI 48 (53)
T ss_dssp HHHHHHHHHHHHHH-HHTCHHHHTSSSSC
T ss_pred hhhhhhhhheeeee-eehHHHHHhhhhhh
Confidence 34555555544443 3443 67999987
No 9
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=5.79 E-value=1.2e+02 Score=16.83 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=15.8
Q ss_pred HHHHHHHhHHHhhhcccchhhhhcc
Q 032264 92 IYERFVRQQIRQYRGGKDHHQHQHR 116 (144)
Q Consensus 92 lY~~~i~P~l~~~e~~ID~~l~~~r 116 (144)
++..++.....+....+++.+.+.|
T Consensus 50 Ll~~~~~~~~~~~~~~~~~~l~~~~ 74 (75)
T d2id6a1 50 LYYQAYMSVTEKLQKEFENFLMKNR 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 4445566666667777777776554
No 10
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=5.73 E-value=89 Score=17.58 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=20.9
Q ss_pred HHHHHhHHHhhhcccchhhhhccCCC
Q 032264 94 ERFVRQQIRQYRGGKDHHQHQHRKSS 119 (144)
Q Consensus 94 ~~~i~P~l~~~e~~ID~~l~~~r~~~ 119 (144)
++++...+.++..++|-.-..+|+|-
T Consensus 4 ekilaqiiqehregldwqeaatrasl 29 (61)
T d2v9va1 4 EKILAQIIQEHREGLDWQEAATRASL 29 (61)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHhhc
Confidence 46788888999999998777788773
Done!