BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032266
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
 pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
           With Tetrahydrofolate
          Length = 443

 Score = 26.2 bits (56), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 78  ATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWL 112
           ATG LAG +      GLPP++      +   VR+L
Sbjct: 348 ATGFLAGLNAARKALGLPPVAPPEESMLGGLVRYL 382


>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
           With Glutathione
          Length = 443

 Score = 25.8 bits (55), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 78  ATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWL 112
           ATG LAG +      GLPP++      +   VR+L
Sbjct: 348 ATGFLAGLNAARKALGLPPVAPPEESXLGGLVRYL 382


>pdb|1AJ0|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
           Dihydropteroate Synthase
 pdb|1AJ2|A Chain A, Crystal Structure Of A Binary Complex Of E. Coli
           Dihydropteroate Synthase
 pdb|1AJZ|A Chain A, Structure Of Dihydropteroate Pyrophosphorylase
          Length = 282

 Score = 25.8 bits (55), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 2   DNIVDALSSAYKEFVAAAANVLE---------AKELSVAQKTAATDAALENFKQRWELFR 52
           ++++DA+  A    + A A +++         A E+SV ++       +E   QR+E++ 
Sbjct: 35  NSLIDAVKHA-NLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVW- 92

Query: 53  VACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLP 95
           ++ D ++  V     ++G+  + D  + S  G    AA TGLP
Sbjct: 93  ISVDTSKPEVIRESAKVGAHIINDIRSLSEPGALEAAAETGLP 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.127    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,268,136
Number of Sequences: 62578
Number of extensions: 94263
Number of successful extensions: 274
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 4
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)