BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032269
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803
Length = 97
Score = 160 bits (404), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 73/96 (76%), Positives = 84/96 (87%)
Query: 47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS 106
MA+Y VKLITP GE I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS
Sbjct: 1 MASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQS 60
Query: 107 EQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
+QSFLDDDQ+ G+VLTC AYPTSD TIETHKEE+L
Sbjct: 61 DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96
>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|1DOY|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|2KAJ|A Chain A, Nmr Structure Of Gallium Substituted Ferredoxin
Length = 96
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 83/95 (87%)
Query: 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
A+Y VKLITP GE I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS+
Sbjct: 1 ASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
QSFLDDDQ+ G+VLTC AYPTSD TIETHKEE+L
Sbjct: 61 QSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95
>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|3B2F|A Chain A, Maize Ferredoxin 1
pdb|3B2F|B Chain B, Maize Ferredoxin 1
Length = 98
Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 83/97 (85%)
Query: 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
ATY VKLITP GE E+ PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG+VDQS+
Sbjct: 1 ATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 144
QS+LDD Q+ +G+VLTC AYPTSDV IETHKEEEL G
Sbjct: 61 QSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTG 97
>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
pdb|3P63|B Chain B, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
Length = 96
Score = 156 bits (394), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 81/95 (85%)
Query: 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
ATYKV LI P G + I PDD +ILDAAEEAG+DLPYSCRAGACS+C GK++SGTVDQS+
Sbjct: 1 ATYKVTLINPTGNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
QSFLDDDQ+ G+VLTC AYPTSD IETHKEEEL
Sbjct: 61 QSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 95
>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin
And Ferredoxin:thioredoxin Reductase
pdb|2PVO|D Chain D, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 96
Score = 155 bits (392), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 71/95 (74%), Positives = 83/95 (87%)
Query: 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
A+Y VKLITP GE I C DD++ILDAAEEAGL+LPYSCRAGACS+C GK+ +G+VDQS+
Sbjct: 1 ASYTVKLITPDGESSIECSDDTYILDAAEEAGLELPYSCRAGACSTCAGKITAGSVDQSD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
QSFLDDDQ+ G+VLTC AYPTSD TIETHKEE+L
Sbjct: 61 QSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95
>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s]
Ferredoxin, Nmr, 18 Structures
Length = 96
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 81/96 (84%)
Query: 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
ATY VKLITP GE E C DD ++LD AEE G+D+PYSCRAG+CSSC GKVVSG++DQS+
Sbjct: 1 ATYNVKLITPDGEVEFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQSD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
QSFLDD+QM G+VLTC AYPTSDV IETHKEEE+
Sbjct: 61 QSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEEEIV 96
>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca
Length = 94
Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/93 (79%), Positives = 80/93 (86%)
Query: 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
YKV L TP GEE I CP+D++ILDAAEEAGLDLPYSCRAGACSSC GKV SG VDQS+QS
Sbjct: 1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQS 60
Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
FLDD QMG+GFVLTC AYPTSDVTI TH+E L
Sbjct: 61 FLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93
>pdb|1A70|A Chain A, Spinach Ferredoxin
Length = 97
Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 80/93 (86%)
Query: 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
YKV L+TP G E CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QS
Sbjct: 3 YKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQS 62
Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
FLDDDQ+ EG+VLTCAAYP SDVTIETHK+EEL
Sbjct: 63 FLDDDQIDEGWVLTCAAYPVSDVTIETHKKEEL 95
>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
pdb|1RFK|B Chain B, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
Length = 98
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/97 (73%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
ATYKV LI G + I PDD +ILDAAEEAG+DLPYSCRAGACS+C GK++SGTVDQ
Sbjct: 1 ATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
S+QSFLDDDQ+ G+VLTC AYPTSD IETHKEEEL
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 97
>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k
pdb|1QOB|B Chain B, Ferredoxin Mutation D62k
Length = 98
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
AT+KV LI G + EI PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
S+QSFLDDDQ+ G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61 SKQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1FXA|A Chain A, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1FXA|B Chain B, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1QT9|A Chain A, Oxidized [2fe-2s] Ferredoxin From Anabaena Pcc7119
pdb|1CZP|A Chain A, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1CZP|B Chain B, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1EWY|C Chain C, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 98
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
AT+KV LI G + EI PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
S+QSFLDDDQ+ G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina
Platensis Refined At 2.5 Angstroms Resolution:
Structural Comparisons Of Plant-Type Ferredoxins And An
Electrostatic Potential Analysis
Length = 98
Score = 144 bits (362), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
ATYKV LI G E I+C DD++ILDAAEEAGLDLPYSCRAGACS+C G + SGT+DQ
Sbjct: 1 ATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
S+QSFLDDDQ+ G+VLTC AYPTSD TI+TH+EE L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 97
>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a
pdb|1QOG|B Chain B, Ferredoxin Mutation S47a
Length = 98
Score = 143 bits (360), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
AT+KV LI G + EI PDD +ILDAAEE G DLP+SCRAGAC++C GK+VSGTVDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACATCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
S+QSFLDDDQ+ G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k
Length = 98
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
AT+KV LI G + EI PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
S+QSFLDDDQ+ G+VLTC AYPTSDV I+THK+E+L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKKEDL 97
>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k
Length = 98
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
AT+KV LI G + EI PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
S+QSFLDDDQ+ G+VLTC AYPTSDV I+THKE++L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEKDL 97
>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k
pdb|1QOF|B Chain B, Ferredoxin Mutation Q70k
Length = 98
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
AT+KV LI G + EI PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
S+QSFLDDD++ G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61 SDQSFLDDDKIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant
Length = 98
Score = 142 bits (357), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 79/97 (81%), Gaps = 2/97 (2%)
Query: 48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
AT+KV LI G + EI PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
S+QSFLD DQ+ G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61 SDQSFLDKDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s
pdb|1QOA|B Chain B, Ferredoxin Mutation C49s
Length = 98
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 79/97 (81%), Gaps = 2/97 (2%)
Query: 48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
AT+KV LI G + EI PDD +ILDAAEE G DLP+SCRAGACS+ GK+VSGTVDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTSAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
S+QSFLDDDQ+ G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|B Chain B, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|C Chain C, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|D Chain D, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
Length = 97
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV-DQS 106
A+YKV L TP G+ I PDD +ILD AEE GLDLPYSCRAGACS+C GK+VSG DQS
Sbjct: 1 ASYKVTLKTPDGDNVITVPDDEYILDVAEEQGLDLPYSCRAGACSTCAGKLVSGPAPDQS 60
Query: 107 EQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
+QSFLDDDQ+ G++LTC AYPT D IETHKEE L
Sbjct: 61 DQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96
>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin
pdb|3B2G|B Chain B, Leptolyngbya Boryana Ferredoxin
Length = 98
Score = 135 bits (340), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 77/96 (80%), Gaps = 2/96 (2%)
Query: 49 TYKVKLI--TPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS 106
++KV LI T G I PDD +ILDAAEE G+DLPYSCRAGACS+C GK+ +GTVDQS
Sbjct: 2 SFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQS 61
Query: 107 EQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
+QSFLDDDQ+ G+VLTC AYPTSD TI TH+EE+L
Sbjct: 62 DQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 97
>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
pdb|1FRR|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
Length = 95
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 75/93 (80%)
Query: 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
YK L TP GE ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VD+SE S
Sbjct: 2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGS 61
Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
FLDD QM EGFVLTC A P SD+ IETHKEEEL
Sbjct: 62 FLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94
>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|B Chain B, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|C Chain C, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|D Chain D, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
Length = 96
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 72/95 (75%)
Query: 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
A+YKV L TP G+ I PDD +ILD AEE GLDLPYSCRAGACS+C GK+VSG +
Sbjct: 1 ASYKVTLKTPDGDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDED 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
QSFLDDDQ+ G++LTC AYPT D IETHKEE L
Sbjct: 61 QSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 95
>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elongatus
pdb|2CJN|A Chain A, Structure Of Ferredoxin, Nmr, Minimized Average Structure
pdb|2CJO|A Chain A, Structure Of Ferredoxin, Nmr, 10 Structures
Length = 97
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
Query: 48 ATYKVKLITPGGEEE-INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS 106
ATYKV L+ P G E I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS
Sbjct: 1 ATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQS 60
Query: 107 EQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
+QSFLDDDQ+ +GFVLTC AYP SD I T++EEEL
Sbjct: 61 DQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 96
>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
pdb|3AB5|B Chain B, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
Length = 97
Score = 132 bits (332), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 76/95 (80%), Gaps = 2/95 (2%)
Query: 50 YKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
YK++L+ G + I C D +ILDAAEE G+DLPYSCRAGACS+C GK+V G+VDQS+
Sbjct: 2 YKIQLVNQKEGIDVTIQCAGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSD 61
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
QSFLD+DQ+ +GF+LTC AYPTSD I+TH+EE L
Sbjct: 62 QSFLDEDQISKGFILTCVAYPTSDCVIQTHQEEAL 96
>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
pdb|1IUE|B Chain B, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
Length = 98
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 68/95 (71%)
Query: 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
A Y + L T GE++I C +D +ILDA+E ++LPYSCR G+CS+C K+V G VD +
Sbjct: 1 AFYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
QS+LD++Q+ + ++L C YP SD IETHKE+EL
Sbjct: 61 QSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDEL 95
>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E. Arvense
Length = 93
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Query: 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
YKV L TP G+ + ++D E DLP SC+AGACS+C GK+VSGTVDQSE S
Sbjct: 2 YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGS 60
Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
FLDD+Q+ +G+VLTC A P SDV IETHKE+EL
Sbjct: 61 FLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93
>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant,
Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120
Determined To 1.7 Angstroms Resolution
Length = 98
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 72/98 (73%), Gaps = 2/98 (2%)
Query: 48 ATYKVKLITPGGEEE--INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
A+Y+V+LI + + I +++ ILD AEE G++LP+SC +G+CSSC GKVV G VDQ
Sbjct: 1 ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
S+Q FLDD+QMG+GF L C YP S+ TI+TH+E LA
Sbjct: 61 SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 98
>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 69 SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV-LTCAAY 127
+IL+AAE G D P+SCRAGAC++C V G +D Q L D+++ E V LTC
Sbjct: 46 EYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVRLTCIGS 105
Query: 128 PTSD 131
P +D
Sbjct: 106 PAAD 109
>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 69 SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV-LTCAAY 127
+IL+AAE G D P+SCRAGAC++C V G +D Q L D+++ E V LTC
Sbjct: 46 EYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVRLTCIGS 105
Query: 128 PTSD 131
P +D
Sbjct: 106 PAAD 109
>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui
Length = 128
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 69 SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV-LTCAAY 127
+IL+AAE G D P+SCRAGAC++C V+ G +D Q L D+++ + V LTC
Sbjct: 46 EYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGS 105
Query: 128 PTSD 131
P +D
Sbjct: 106 PDAD 109
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQ 105
MA YKV L P ++E+ +++ +++A AG+++ C AG C C +VV G
Sbjct: 1 MAEYKV-LFKPD-QKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRV 58
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIE 135
L +++ +G+VL C YP SD+ IE
Sbjct: 59 ESYGKLKQEEIAQGYVLACQTYPESDLIIE 88
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 73 DAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDD----DQMGEGFVLTCAAYP 128
DAA +++P CR G C +C SG D E ++++D ++ +G+VL C P
Sbjct: 28 DAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRP 87
Query: 129 TSDVTIETHKEEEL 142
TSD + E+
Sbjct: 88 TSDAVFQIQASSEV 101
>pdb|1JQ4|A Chain A, [2fe-2s] Domain Of Methane Monooxygenase Reductase From
Methylococcus Capsulatus (Bath)
Length = 98
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 50 YKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQ 108
+ + +T GE C D ++ AA + L SCR G C++C G D
Sbjct: 5 HTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGC 64
Query: 109 SF--LDDDQMGEGFVLTCAAYPTSDVTIE 135
S L ++ EG VL C YP +D+ IE
Sbjct: 65 SVQALPPEEEEEGLVLLCRTYPKTDLEIE 93
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
+ V+L G EI P + IL+ +A + +P SC +G C SC + SG D +
Sbjct: 238 FTVRLSRSGTSFEI--PANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDMV 295
Query: 110 FLDDDQ 115
DD++
Sbjct: 296 LRDDEK 301
>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx
pdb|1I7H|B Chain B, Crystal Sturcuture Of Fdx
pdb|1I7H|C Chain C, Crystal Sturcuture Of Fdx
Length = 111
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 65 CPDDSF--------ILDAAEEAGLDLPYSC-RAGACSSCTGKVVSGTVDQSEQSFLDDDQ 115
CPD + ILDAA G+++ ++C ++ AC++C V G E S +DD
Sbjct: 13 CPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDM 72
Query: 116 MGEGF------VLTCAAYPT-SDVTIE 135
+ + + L+C A T D+ +E
Sbjct: 73 LDKAWGLEPESRLSCQARVTDEDLVVE 99
>pdb|3EVZ|A Chain A, Crystal Strucure Of Methyltransferase From Pyrococcus
Furiosus
Length = 230
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 55 ITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR 87
+ PGG+ + PD +L+ +E G+ L YS +
Sbjct: 169 LNPGGKVALYLPDKEKLLNVIKERGIKLGYSVK 201
>pdb|2L3U|A Chain A, Solution Structure Of Domain Iv From The Ybbr Family
Protein Of Desulfitobacterium Hafniense: Northeast
Structural Genomics Consortium Target Dhr29a
Length = 98
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 13 FIRSKP---TATSLKAMP----NMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINC 65
+ KP + +++A P N+ + L + G+ V T K+ P G E ++
Sbjct: 18 LVLEKPLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVSI 77
Query: 66 PDDSFILDAAEE 77
PD ++ L A E+
Sbjct: 78 PDVTYTLKAKED 89
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 1 MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLK 37
++ LS MVS S + P L A P G +I GLK
Sbjct: 484 LSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLK 520
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 1 MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLK 37
++ LS MVS S + P L A P G +I GLK
Sbjct: 484 LSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLK 520
>pdb|3KL9|A Chain A, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|B Chain B, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|C Chain C, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|D Chain D, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|E Chain E, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|F Chain F, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|G Chain G, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|H Chain H, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|I Chain I, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|J Chain J, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|K Chain K, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|L Chain L, Crystal Structure Of Pepa From Streptococcus Pneumoniae
Length = 355
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 70 FILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV 103
F+L AEEAG+ Y C G + + +G V
Sbjct: 273 FLLTTAEEAGIKYQYYCGKGGTDAGAAHLKNGGV 306
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGL 80
AT K KLI P EEE P++ + + G+
Sbjct: 1 ATLKEKLIAPVAEEEATVPNNKITVVGVGQVGM 33
>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 241
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 80 LDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP-TSDVTIET 136
L+ + CRAG C SC G +++G + ++ D + G +L A+ D++++T
Sbjct: 51 LNFDFVCRAGICGSC-GMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDT 107
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGL 80
AT K KLI P EEE P++ + + G+
Sbjct: 1 ATLKEKLIAPVAEEEATVPNNKITVVGVGQVGM 33
>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|B Chain B, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|E Chain E, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|B Chain B, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|E Chain E, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
Length = 239
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 80 LDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP-TSDVTIET 136
L+ + CRAG C SC G +++G + ++ D + G +L A+ D++++T
Sbjct: 51 LNFDFVCRAGICGSC-GMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDT 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,980,068
Number of Sequences: 62578
Number of extensions: 151699
Number of successful extensions: 311
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 51
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)