Query 032269
Match_columns 144
No_of_seqs 240 out of 1375
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 11:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03136 Ferredoxin; Provision 100.0 1.4E-29 3E-34 186.7 11.9 140 4-143 6-148 (148)
2 CHL00134 petF ferredoxin; Vali 99.9 1.5E-26 3.2E-31 160.3 10.8 97 47-143 1-99 (99)
3 TIGR02008 fdx_plant ferredoxin 99.9 3E-26 6.6E-31 158.0 10.2 95 49-143 2-97 (97)
4 PRK10684 HCP oxidoreductase, N 99.9 2.3E-26 4.9E-31 188.0 8.8 125 4-135 208-332 (332)
5 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 2.8E-25 6.1E-30 182.5 10.1 132 3-136 211-351 (352)
6 PTZ00038 ferredoxin; Provision 99.9 1.7E-24 3.7E-29 165.1 10.4 96 48-143 94-189 (191)
7 PRK10713 2Fe-2S ferredoxin Yfa 99.9 1.7E-23 3.6E-28 140.9 9.3 82 50-136 2-84 (84)
8 PRK07609 CDP-6-deoxy-delta-3,4 99.8 8.9E-21 1.9E-25 155.1 10.0 90 50-141 3-94 (339)
9 cd00207 fer2 2Fe-2S iron-sulfu 99.8 4.8E-20 1E-24 122.3 8.5 75 61-135 10-84 (84)
10 COG0633 Fdx Ferredoxin [Energy 99.8 5.6E-20 1.2E-24 128.0 7.6 81 60-140 14-99 (102)
11 PLN02593 adrenodoxin-like ferr 99.8 6.7E-20 1.4E-24 130.5 7.9 91 50-140 1-104 (117)
12 PRK05713 hypothetical protein; 99.8 7.9E-20 1.7E-24 148.4 9.3 80 58-138 7-86 (312)
13 PRK11872 antC anthranilate dio 99.8 1.6E-19 3.5E-24 148.3 10.5 91 50-140 3-96 (340)
14 TIGR02007 fdx_isc ferredoxin, 99.8 1.7E-19 3.7E-24 127.0 8.1 85 56-141 12-104 (110)
15 TIGR01941 nqrF NADH:ubiquinone 99.8 3.6E-19 7.8E-24 149.4 9.3 92 47-138 27-122 (405)
16 PTZ00490 Ferredoxin superfamil 99.8 9E-19 2E-23 128.5 8.3 92 49-140 35-139 (143)
17 PRK05464 Na(+)-translocating N 99.7 5.6E-18 1.2E-22 142.3 9.9 89 49-138 35-126 (409)
18 PF00111 Fer2: 2Fe-2S iron-sul 99.7 1.4E-18 2.9E-23 114.4 4.8 69 60-129 7-78 (78)
19 COG2871 NqrF Na+-transporting 99.7 1.5E-17 3.2E-22 133.8 6.6 93 49-144 36-131 (410)
20 COG3894 Uncharacterized metal- 99.6 2.5E-15 5.4E-20 127.8 4.8 89 50-142 2-92 (614)
21 PRK07569 bidirectional hydroge 99.3 6.9E-12 1.5E-16 98.7 7.2 73 47-139 1-79 (234)
22 PF13510 Fer2_4: 2Fe-2S iron-s 99.3 8.9E-12 1.9E-16 83.4 5.0 69 49-138 3-81 (82)
23 KOG3309 Ferredoxin [Energy pro 99.2 7.1E-11 1.5E-15 86.9 7.1 92 49-140 43-146 (159)
24 PRK08166 NADH dehydrogenase su 99.1 1.4E-10 3.1E-15 105.4 7.3 75 50-139 2-82 (847)
25 PTZ00305 NADH:ubiquinone oxido 98.9 4.7E-09 1E-13 84.9 6.9 72 48-139 67-145 (297)
26 PRK06259 succinate dehydrogena 98.8 1.2E-08 2.5E-13 87.7 7.5 60 61-138 23-88 (486)
27 PRK12814 putative NADPH-depend 98.7 2.4E-08 5.2E-13 88.7 7.0 73 47-139 1-79 (652)
28 COG1034 NuoG NADH dehydrogenas 98.7 3.4E-08 7.4E-13 88.1 6.5 71 49-139 1-77 (693)
29 PRK09130 NADH dehydrogenase su 98.7 4.5E-08 9.8E-13 87.6 7.0 71 50-139 2-78 (687)
30 TIGR01973 NuoG NADH-quinone ox 98.6 1.1E-07 2.4E-12 83.7 6.2 66 58-139 4-75 (603)
31 PRK09129 NADH dehydrogenase su 98.5 2.1E-07 4.4E-12 84.2 6.8 70 50-139 2-77 (776)
32 PRK08493 NADH dehydrogenase su 98.5 2.8E-07 6.1E-12 83.9 7.0 68 50-139 2-75 (819)
33 PRK07860 NADH dehydrogenase su 98.5 3.7E-07 8.1E-12 82.9 6.7 69 49-137 4-78 (797)
34 PF13085 Fer2_3: 2Fe-2S iron-s 98.4 7.8E-07 1.7E-11 62.7 5.4 53 61-131 21-79 (110)
35 PRK08640 sdhB succinate dehydr 98.2 1.5E-06 3.3E-11 69.2 5.0 57 61-135 25-97 (249)
36 PRK13552 frdB fumarate reducta 98.2 1.5E-06 3.2E-11 68.9 4.9 57 61-135 26-92 (239)
37 PRK11433 aldehyde oxidoreducta 98.2 9E-06 2E-10 63.5 8.0 49 50-102 52-103 (217)
38 PRK12386 fumarate reductase ir 98.2 4.4E-06 9.6E-11 66.7 6.2 38 61-98 22-65 (251)
39 PRK12385 fumarate reductase ir 98.1 3.4E-06 7.4E-11 67.0 4.4 58 61-136 27-93 (244)
40 PRK12577 succinate dehydrogena 98.1 7.7E-06 1.7E-10 67.5 6.0 38 61-98 21-64 (329)
41 PRK09908 xanthine dehydrogenas 98.1 1.3E-05 2.9E-10 59.9 6.3 51 51-102 8-59 (159)
42 COG3383 Uncharacterized anaero 98.0 1.2E-05 2.5E-10 72.4 6.9 68 49-138 5-78 (978)
43 TIGR00384 dhsB succinate dehyd 97.9 6.3E-06 1.4E-10 64.2 3.1 40 61-101 17-62 (220)
44 PRK07570 succinate dehydrogena 97.9 7E-06 1.5E-10 65.5 3.2 56 61-128 22-88 (250)
45 PLN00129 succinate dehydrogena 97.8 1.8E-05 3.9E-10 64.0 3.9 50 62-129 63-121 (276)
46 TIGR03193 4hydroxCoAred 4-hydr 97.8 4.9E-05 1.1E-09 56.2 5.8 49 51-102 3-53 (148)
47 PRK12575 succinate dehydrogena 97.8 2.3E-05 5E-10 62.0 4.3 57 62-136 26-91 (235)
48 PRK12576 succinate dehydrogena 97.8 4.1E-05 9E-10 61.9 5.7 40 61-101 27-72 (279)
49 PRK05950 sdhB succinate dehydr 97.8 2.7E-05 5.9E-10 61.1 4.3 41 61-102 20-67 (232)
50 COG0479 FrdB Succinate dehydro 97.8 2.8E-05 6.1E-10 61.5 4.2 38 61-98 22-65 (234)
51 COG1018 Hmp Flavodoxin reducta 97.7 2E-05 4.2E-10 63.4 2.1 66 3-76 200-266 (266)
52 TIGR03198 pucE xanthine dehydr 97.4 0.00043 9.3E-09 51.4 5.9 50 50-102 4-55 (151)
53 COG2080 CoxS Aerobic-type carb 97.3 0.00072 1.6E-08 50.3 5.9 51 49-102 3-55 (156)
54 TIGR02963 xanthine_xdhA xanthi 96.8 0.0019 4.2E-08 55.8 4.9 39 60-98 9-50 (467)
55 TIGR03311 Se_dep_Molyb_1 selen 96.7 0.0032 7E-08 58.0 5.8 47 51-102 2-50 (848)
56 PRK09800 putative hypoxanthine 96.6 0.0044 9.4E-08 57.9 6.0 50 50-102 3-54 (956)
57 KOG2282 NADH-ubiquinone oxidor 96.5 0.0046 9.9E-08 54.0 4.8 42 58-100 38-85 (708)
58 PLN00192 aldehyde oxidase 95.9 0.015 3.3E-07 56.0 6.0 48 50-99 6-56 (1344)
59 TIGR03313 Se_sel_red_Mo probab 95.7 0.015 3.3E-07 54.3 4.9 42 60-102 7-50 (951)
60 TIGR02969 mam_aldehyde_ox alde 95.5 0.021 4.5E-07 55.1 5.1 47 50-99 3-53 (1330)
61 TIGR01372 soxA sarcosine oxida 95.2 0.088 1.9E-06 49.4 8.0 75 47-138 10-95 (985)
62 cd06220 DHOD_e_trans_like2 FAD 95.1 0.0084 1.8E-07 46.5 1.0 31 69-99 180-216 (233)
63 KOG3049 Succinate dehydrogenas 94.7 0.065 1.4E-06 42.3 4.7 32 67-98 75-112 (288)
64 COG4630 XdhA Xanthine dehydrog 92.2 0.41 8.8E-06 40.8 5.8 49 50-98 7-58 (493)
65 cd06219 DHOD_e_trans_like1 FAD 88.8 0.51 1.1E-05 36.9 3.5 31 70-101 194-230 (248)
66 PRK00054 dihydroorotate dehydr 87.8 0.39 8.4E-06 37.6 2.2 31 70-100 195-231 (250)
67 PLN02906 xanthine dehydrogenas 86.8 0.67 1.5E-05 45.0 3.5 32 68-99 1-33 (1319)
68 cd06218 DHOD_e_trans FAD/NAD b 86.7 0.79 1.7E-05 35.8 3.4 32 69-100 193-230 (246)
69 PRK08345 cytochrome-c3 hydroge 84.2 0.69 1.5E-05 37.2 2.0 33 69-101 225-266 (289)
70 KOG0430 Xanthine dehydrogenase 84.0 1.9 4.2E-05 41.3 5.0 37 64-100 16-54 (1257)
71 PF10418 DHODB_Fe-S_bind: Iron 81.1 0.98 2.1E-05 26.0 1.3 18 84-101 4-21 (40)
72 PRK05659 sulfur carrier protei 80.0 3.6 7.8E-05 25.5 3.8 28 51-82 2-29 (66)
73 PRK06222 ferredoxin-NADP(+) re 79.7 1.8 3.9E-05 34.6 2.8 28 71-98 196-229 (281)
74 cd06221 sulfite_reductase_like 78.5 1.7 3.6E-05 34.1 2.3 29 69-97 203-240 (253)
75 PRK08364 sulfur carrier protei 77.4 6.3 0.00014 25.0 4.4 36 47-82 2-37 (70)
76 cd01760 RBD Ubiquitin-like dom 75.2 5.2 0.00011 25.9 3.6 23 55-77 5-28 (72)
77 TIGR02911 sulfite_red_B sulfit 74.8 1.8 4E-05 34.2 1.6 27 71-97 205-240 (261)
78 PRK07440 hypothetical protein; 72.8 9.6 0.00021 24.3 4.4 29 50-82 5-33 (70)
79 PRK05802 hypothetical protein; 72.5 2.7 5.8E-05 34.5 2.1 28 71-98 269-304 (320)
80 PRK12778 putative bifunctional 71.2 3.9 8.4E-05 37.3 3.0 29 70-98 195-229 (752)
81 PRK01777 hypothetical protein; 70.8 12 0.00026 25.5 4.7 24 61-84 19-42 (95)
82 PRK05863 sulfur carrier protei 70.0 11 0.00025 23.4 4.2 28 51-82 2-29 (65)
83 PRK08221 anaerobic sulfite red 67.4 4 8.6E-05 32.3 2.0 28 70-97 206-242 (263)
84 PRK08345 cytochrome-c3 hydroge 66.9 1.3 2.9E-05 35.5 -0.8 29 4-33 217-245 (289)
85 PRK06083 sulfur carrier protei 66.4 13 0.00029 24.6 4.1 31 47-81 16-46 (84)
86 PF02824 TGS: TGS domain; Int 64.3 9.6 0.00021 23.4 2.9 30 56-86 5-34 (60)
87 PRK06944 sulfur carrier protei 63.6 15 0.00032 22.5 3.7 27 51-81 2-28 (65)
88 smart00455 RBD Raf-like Ras-bi 63.4 14 0.00029 23.6 3.6 22 56-77 6-28 (70)
89 cd06192 DHOD_e_trans_like FAD/ 61.0 5.1 0.00011 31.0 1.5 16 83-98 213-228 (243)
90 cd01816 Raf_RBD Ubiquitin doma 58.2 15 0.00033 24.0 3.1 23 56-78 6-29 (74)
91 COG2104 ThiS Sulfur transfer p 56.9 29 0.00062 22.2 4.2 29 50-82 3-31 (68)
92 PRK08053 sulfur carrier protei 55.6 30 0.00064 21.4 4.1 28 51-82 2-29 (66)
93 PRK12779 putative bifunctional 54.5 12 0.00027 35.3 3.1 29 70-98 861-895 (944)
94 PRK06567 putative bifunctional 52.9 6.6 0.00014 37.5 1.0 33 82-131 970-1003(1028)
95 PF02196 RBD: Raf-like Ras-bin 52.4 27 0.00058 22.3 3.6 23 56-78 7-30 (71)
96 PRK12775 putative trifunctiona 49.7 14 0.00031 35.1 2.7 28 71-98 196-229 (1006)
97 PF03658 Ub-RnfH: RnfH family 49.0 25 0.00054 23.5 3.1 21 61-81 16-36 (84)
98 TIGR01683 thiS thiamine biosyn 42.4 39 0.00084 20.7 3.1 23 58-81 4-26 (64)
99 cd00565 ThiS ThiaminS ubiquiti 42.2 50 0.0011 20.2 3.6 27 52-82 2-28 (65)
100 PF03990 DUF348: Domain of unk 42.1 44 0.00095 19.0 3.1 26 58-83 7-32 (43)
101 PRK06437 hypothetical protein; 41.4 64 0.0014 20.2 4.1 22 61-82 13-34 (67)
102 PRK07696 sulfur carrier protei 40.6 65 0.0014 20.1 4.0 28 51-82 2-30 (67)
103 cd01817 RGS12_RBD Ubiquitin do 37.9 56 0.0012 21.3 3.4 22 56-77 6-28 (73)
104 PF10531 SLBB: SLBB domain; I 37.4 22 0.00048 21.5 1.4 23 62-84 13-35 (59)
105 COG4070 Predicted peptidyl-pro 35.5 54 0.0012 28.4 3.8 31 51-85 3-33 (512)
106 PF11543 UN_NPL4: Nuclear pore 34.5 72 0.0016 20.8 3.6 27 50-76 5-31 (80)
107 PF04225 OapA: Opacity-associa 34.0 40 0.00087 22.2 2.3 21 62-82 4-24 (85)
108 cd01995 ExsB ExsB is a transcr 33.5 31 0.00067 25.0 1.9 29 67-95 125-158 (169)
109 TIGR02911 sulfite_red_B sulfit 31.8 11 0.00025 29.6 -0.8 26 4-30 195-220 (261)
110 cd01813 UBP_N UBP ubiquitin pr 31.7 71 0.0015 20.3 3.1 24 51-74 2-25 (74)
111 PF01476 LysM: LysM domain; I 29.1 56 0.0012 17.9 2.1 19 64-82 2-20 (44)
112 cd01818 TIAM1_RBD Ubiquitin do 29.0 90 0.0019 20.6 3.2 21 57-77 7-28 (77)
113 cd01812 BAG1_N Ubiquitin-like 27.5 96 0.0021 18.8 3.2 26 51-76 2-27 (71)
114 PF11470 TUG-UBL1: GLUT4 regul 27.3 82 0.0018 19.8 2.8 19 60-78 8-26 (65)
115 cd01808 hPLIC_N Ubiquitin-like 26.9 1.1E+02 0.0025 18.7 3.5 24 51-74 2-25 (71)
116 COG3061 OapA Cell envelope opa 26.8 55 0.0012 26.0 2.3 24 60-83 159-182 (242)
117 cd06221 sulfite_reductase_like 26.7 14 0.0003 28.9 -1.1 29 4-33 195-223 (253)
118 TIGR02899 spore_safA spore coa 26.4 44 0.00096 17.9 1.3 18 65-82 1-18 (44)
119 PRK05783 hypothetical protein; 26.2 97 0.0021 20.6 3.1 31 49-82 4-34 (84)
120 PRK08221 anaerobic sulfite red 26.2 16 0.00034 28.9 -0.9 28 4-32 197-224 (263)
121 PF09012 FeoC: FeoC like trans 26.0 34 0.00075 21.3 0.9 27 69-96 32-62 (69)
122 PRK11106 queuosine biosynthesi 26.0 53 0.0012 25.8 2.1 29 69-97 166-203 (231)
123 PRK00969 hypothetical protein; 25.3 1.2E+02 0.0025 27.0 4.2 34 50-87 2-35 (508)
124 cd00118 LysM Lysin domain, fou 24.1 78 0.0017 16.2 2.1 21 62-82 2-22 (46)
125 cd01791 Ubl5 UBL5 ubiquitin-li 23.6 1.7E+02 0.0037 18.5 3.8 25 50-74 2-27 (73)
126 PRK06549 acetyl-CoA carboxylas 22.4 73 0.0016 22.9 2.1 19 46-67 1-20 (130)
127 PF14451 Ub-Mut7C: Mut7-C ubiq 22.4 1.8E+02 0.0039 19.1 3.8 23 61-83 25-47 (81)
128 PF06508 QueC: Queuosine biosy 22.3 39 0.00085 26.0 0.7 29 66-95 162-197 (209)
129 TIGR00364 exsB protein. This p 22.2 69 0.0015 24.0 2.0 28 68-95 161-196 (201)
130 COG1828 PurS Phosphoribosylfor 21.4 1.5E+02 0.0031 19.8 3.2 30 49-81 3-32 (83)
131 cd01790 Herp_N Homocysteine-re 20.9 2E+02 0.0043 18.8 3.8 27 50-76 2-31 (79)
132 COG2440 FixX Ferredoxin-like p 20.8 43 0.00093 23.2 0.6 11 90-100 69-79 (99)
133 cd01668 TGS_RelA_SpoT TGS_RelA 20.5 1.3E+02 0.0028 17.3 2.7 26 56-82 5-30 (60)
134 smart00213 UBQ Ubiquitin homol 20.5 1.8E+02 0.0038 16.8 3.3 24 51-74 2-25 (64)
No 1
>PLN03136 Ferredoxin; Provisional
Probab=99.96 E-value=1.4e-29 Score=186.68 Aligned_cols=140 Identities=69% Similarity=1.168 Sum_probs=118.1
Q ss_pred ccccccchHHHhcCCcccccCCCCCce-eeeccCCc--CCCCccccccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCC
Q 032269 4 LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKA--NRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGL 80 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~e~F~~~~--~~~~~~~~m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi 80 (144)
+.++....+|+++.+..+++++..... .-+||... .+.++.+.|..++|+|+.+++.++|++++|++|||+++++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~V~l~~~~~~~~~~~~~g~tILdAa~~~Gi 85 (148)
T PLN03136 6 LSSAIVSTSFLRRQQTPISLRSLPSANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAAEEAGI 85 (148)
T ss_pred hhhhhhhhhcccccccccccccccccccccccccccccccCcccceeeeEEEEEecCCCcEEEEeCCCCcHHHHHHHcCC
Confidence 466666677887777666665543332 45788887 445677888889999965666458999999999999999999
Q ss_pred CCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCCeEEEcCCccccc
Q 032269 81 DLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143 (144)
Q Consensus 81 ~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~~~~~~~~~ 143 (144)
++||+|+.|.||+|+++|++|.+++.+...|++++.++||+|+||++|.+|++|+++.+++|.
T Consensus 86 ~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC~a~p~sD~~Ie~~~e~~l~ 148 (148)
T PLN03136 86 DLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAIM 148 (148)
T ss_pred CCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEeEeEECCCcEEecCChhhcC
Confidence 999999999999999999999999887778999999999999999999999999999998873
No 2
>CHL00134 petF ferredoxin; Validated
Probab=99.94 E-value=1.5e-26 Score=160.28 Aligned_cols=97 Identities=73% Similarity=1.213 Sum_probs=86.4
Q ss_pred ccceEEEEEcC-CC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEee
Q 032269 47 MATYKVKLITP-GG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTC 124 (144)
Q Consensus 47 m~~~~V~i~~~-~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaC 124 (144)
|+.++|+|..+ ++ .+.|++++|+|||++++++||++|++|+.|.||+|++++++|++.+.+...|+++++++||+|+|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C 80 (99)
T CHL00134 1 MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTC 80 (99)
T ss_pred CCeEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEe
Confidence 56789999431 33 34799999999999999999999999999999999999999999887666788888999999999
Q ss_pred eceECCCeEEEcCCccccc
Q 032269 125 AAYPTSDVTIETHKEEELA 143 (144)
Q Consensus 125 q~~~~~dl~I~~~~~~~~~ 143 (144)
|++|.+|++|++++++++|
T Consensus 81 ~~~~~~d~~i~~~~~~~~~ 99 (99)
T CHL00134 81 VAYPTSDCTILTHQEEELY 99 (99)
T ss_pred eCEECCCeEEEeccccccC
Confidence 9999999999999998876
No 3
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.94 E-value=3e-26 Score=158.02 Aligned_cols=95 Identities=78% Similarity=1.292 Sum_probs=85.3
Q ss_pred ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeece
Q 032269 49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAY 127 (144)
Q Consensus 49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~ 127 (144)
.++|+|+.+++ .+.|.+++|+|||++++++|+++|++|++|.||+|+++|++|.+++.+...|+++++++|++|+||++
T Consensus 2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~ 81 (97)
T TIGR02008 2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAY 81 (97)
T ss_pred eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCE
Confidence 36788854555 34899999999999999999999999999999999999999999876666688888999999999999
Q ss_pred ECCCeEEEcCCccccc
Q 032269 128 PTSDVTIETHKEEELA 143 (144)
Q Consensus 128 ~~~dl~I~~~~~~~~~ 143 (144)
+.+|++|++++++++|
T Consensus 82 ~~~di~v~~~~~~~~~ 97 (97)
T TIGR02008 82 PTSDCTIETHKEEDLY 97 (97)
T ss_pred ECCCeEEEeccccccC
Confidence 9999999999998876
No 4
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.93 E-value=2.3e-26 Score=188.04 Aligned_cols=125 Identities=22% Similarity=0.381 Sum_probs=108.5
Q ss_pred ccccccchHHHhcCCcccccCCCCCceeeeccCCcCCCCccccccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCC
Q 032269 4 LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLP 83 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~F~~~~~~~~~~~~m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~ 83 (144)
+|||..|+..+.+.+...+.+. ++||+|.|+.+.... ....++|++ ...++ ++++++|+|||++++++|++++
T Consensus 208 iCGP~~m~~~v~~~l~~~Gv~~-~~i~~E~F~~~~~~~----~~~~~~v~~-~~~~~-~~~~~~~~~lL~~~~~~gi~~~ 280 (332)
T PRK10684 208 TCGPAPYMDWVEQEVKALGVTA-DRFFKEKFFTPVAEA----ATSGLTFTK-LQPAR-EFYAPVGTTLLEALESNKVPVV 280 (332)
T ss_pred EECCHHHHHHHHHHHHHcCCCH-HHeEeeccCCCCCCc----CCCceEEEE-ecCCE-EEEeCCCChHHHHHHHcCCCcc
Confidence 7999999999999998877777 999999998653111 123577888 44554 7999999999999999999999
Q ss_pred CCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCCeEEE
Q 032269 84 YSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIE 135 (144)
Q Consensus 84 ~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~ 135 (144)
++|+.|.||+|++++++|++.+.....|+++++++|++|+||++|.+|++|+
T Consensus 281 ~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~d~~i~ 332 (332)
T PRK10684 281 AACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA 332 (332)
T ss_pred CCCCCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeCEECCCeEEC
Confidence 9999999999999999999998766779999999999999999999998873
No 5
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.92 E-value=2.8e-25 Score=182.48 Aligned_cols=132 Identities=30% Similarity=0.490 Sum_probs=107.5
Q ss_pred cccccccchHHHhcCCcccccCCCCCceeeeccCCcCCC--Ccc----ccccceEEEEEcCCCe-EE-EEcCCchhHHHH
Q 032269 3 TLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRG--GRV----VAMATYKVKLITPGGE-EE-INCPDDSFILDA 74 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~F~~~~~~~--~~~----~~m~~~~V~i~~~~g~-~~-i~v~~g~tLL~a 74 (144)
-+|||..|+..+++.+...+.+. .+||+|.|+.+..+. .+. .....++|+|. .+|. .. +.+++|+|||++
T Consensus 211 yiCGp~~m~~~v~~~L~~~Gv~~-~~i~~E~F~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~slL~~ 288 (352)
T TIGR02160 211 FLCGPQAMVDDAEQALTGLGVPA-GRVHLELFYTDDEPGREVRHEVSGPEGDVSKVTVT-LDGRSTETSSLSRDESVLDA 288 (352)
T ss_pred EEECCHHHHHHHHHHHHHcCCCH-HHEEEEeccCCCCCcccccccccccCCCceEEEEE-ECCceEEEEecCCCCcHHHH
Confidence 37999999999999999877777 999999998732111 000 11234678884 4553 22 578999999999
Q ss_pred HHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC-eEEEc
Q 032269 75 AEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD-VTIET 136 (144)
Q Consensus 75 ~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d-l~I~~ 136 (144)
++++|++++++|+.|.||+|++++++|++.+.+...|++++.++|++|+||++|.+| ++|++
T Consensus 289 ~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~~~~~~~~ 351 (352)
T TIGR02160 289 ALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAYPLSDKLVVDY 351 (352)
T ss_pred HHHcCCCCcCCCCCccCCCCEEEEeccccccccccCCCHHHHhCCcEEEeeEEECCCcEEEec
Confidence 999999999999999999999999999999877667898899999999999999987 87764
No 6
>PTZ00038 ferredoxin; Provisional
Probab=99.91 E-value=1.7e-24 Score=165.11 Aligned_cols=96 Identities=54% Similarity=1.061 Sum_probs=87.6
Q ss_pred cceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeece
Q 032269 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAY 127 (144)
Q Consensus 48 ~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~ 127 (144)
..++|+|..+++.+++++++|+||||+++++||++|++|+.|.||+|+++|++|++.+.+...|+++++++||+|+||++
T Consensus 94 ~~~~Vt~~~~~g~~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa~ 173 (191)
T PTZ00038 94 LFYNITLQTPDGEKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCY 173 (191)
T ss_pred ceEEEEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeCE
Confidence 35889985465545899999999999999999999999999999999999999999988877899999999999999999
Q ss_pred ECCCeEEEcCCccccc
Q 032269 128 PTSDVTIETHKEEELA 143 (144)
Q Consensus 128 ~~~dl~I~~~~~~~~~ 143 (144)
|.+|++|+++++++++
T Consensus 174 p~sDi~Ie~p~e~~~~ 189 (191)
T PTZ00038 174 PKSDCTIETHKEDELH 189 (191)
T ss_pred ECCCeEEecCChHHhc
Confidence 9999999999988764
No 7
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.90 E-value=1.7e-23 Score=140.90 Aligned_cols=82 Identities=30% Similarity=0.588 Sum_probs=70.0
Q ss_pred eEEEEEcCCCeEEEEcCC-chhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceE
Q 032269 50 YKVKLITPGGEEEINCPD-DSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP 128 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~-g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~ 128 (144)
++|+| .+++. .|.+++ ++|||++++++|+++||+|++|.||+|++++++|++++.+.. ..+.++|++|+||++|
T Consensus 2 ~~v~~-~~~~~-~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~~p 76 (84)
T PRK10713 2 ARVTL-RITGT-QLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCCRA 76 (84)
T ss_pred CEEEE-EeCCc-EEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeCEE
Confidence 57777 55664 799986 599999999999999999999999999999999999875432 2356789999999999
Q ss_pred CCCeEEEc
Q 032269 129 TSDVTIET 136 (144)
Q Consensus 129 ~~dl~I~~ 136 (144)
.+|++|++
T Consensus 77 ~sd~~ie~ 84 (84)
T PRK10713 77 KGDIEIEM 84 (84)
T ss_pred CCCEEEeC
Confidence 99999874
No 8
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.84 E-value=8.9e-21 Score=155.12 Aligned_cols=90 Identities=39% Similarity=0.772 Sum_probs=81.1
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCC--cCCCCCccccCCCeEEeeece
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS--EQSFLDDDQMGEGFVLTCAAY 127 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rLaCq~~ 127 (144)
++|+| .++++ ++++++|+|||++++++|++++++|+.|.||+|++++++|++++. +...|++++.++|++|+||++
T Consensus 3 ~~v~~-~~~~~-~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~ 80 (339)
T PRK07609 3 FQVTL-QPSGR-QFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAK 80 (339)
T ss_pred EEEEE-ecCCe-EEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCE
Confidence 57888 56664 799999999999999999999999999999999999999999875 556788888999999999999
Q ss_pred ECCCeEEEcCCccc
Q 032269 128 PTSDVTIETHKEEE 141 (144)
Q Consensus 128 ~~~dl~I~~~~~~~ 141 (144)
+.+|++|+++...+
T Consensus 81 ~~~d~~i~~~~~~~ 94 (339)
T PRK07609 81 PLSDLVLEAREVPA 94 (339)
T ss_pred ECCCEEEEeccccc
Confidence 99999999887654
No 9
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.82 E-value=4.8e-20 Score=122.29 Aligned_cols=75 Identities=49% Similarity=0.928 Sum_probs=68.8
Q ss_pred EEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCCeEEE
Q 032269 61 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIE 135 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~ 135 (144)
+++.+++|+|||++++++|+++++.|+.|.||+|+++|.+|.+.+.....++..+..+++||+||+++.+|++|+
T Consensus 10 ~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~i~v~ 84 (84)
T cd00207 10 VEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE 84 (84)
T ss_pred EEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCCcEEC
Confidence 589999999999999999999999999999999999999999987766667777788999999999999999874
No 10
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.81 E-value=5.6e-20 Score=127.99 Aligned_cols=81 Identities=31% Similarity=0.594 Sum_probs=64.6
Q ss_pred eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeC--cccCCc---CCCCCccccCCCeEEeeeceECCCeEE
Q 032269 60 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSG--TVDQSE---QSFLDDDQMGEGFVLTCAAYPTSDVTI 134 (144)
Q Consensus 60 ~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G--~~~~~e---~~~L~~~~~~~g~rLaCq~~~~~dl~I 134 (144)
...+.++.|+|||++++++||+++|+|+.|.||+|+|+|++| .+...+ ...|.+.....++||+||+++.+|+.+
T Consensus 14 ~~~~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~~~d~~i 93 (102)
T COG0633 14 DVTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDI 93 (102)
T ss_pred ceEEeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEECCCcce
Confidence 335666679999999999999999999999999999999999 555432 223443456677999999999999887
Q ss_pred EcCCcc
Q 032269 135 ETHKEE 140 (144)
Q Consensus 135 ~~~~~~ 140 (144)
++....
T Consensus 94 ~~~~~~ 99 (102)
T COG0633 94 EVVEEP 99 (102)
T ss_pred EEEecc
Confidence 655443
No 11
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.81 E-value=6.7e-20 Score=130.51 Aligned_cols=91 Identities=24% Similarity=0.405 Sum_probs=73.6
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCccc-------CCcCCCCC-ccccCCC
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVD-------QSEQSFLD-DDQMGEG 119 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~-------~~e~~~L~-~~~~~~g 119 (144)
++|+|+.++| ++++++++|+|||++++++|+++++.|+ .|.||+|+|+|+++... ..|...|+ ..+..++
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~ 80 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET 80 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence 3688866777 4679999999999999999999999999 79999999999654321 12344566 4567789
Q ss_pred eEEeeeceECC---CeEEEcCCcc
Q 032269 120 FVLTCAAYPTS---DVTIETHKEE 140 (144)
Q Consensus 120 ~rLaCq~~~~~---dl~I~~~~~~ 140 (144)
+|||||+.+.+ |++|++|++.
T Consensus 81 sRLaCQ~~v~~~~~~~~v~ip~~~ 104 (117)
T PLN02593 81 SRLGCQVIAKPELDGMRLALPAAT 104 (117)
T ss_pred eEecceeEeecCCCCEEEEcCchh
Confidence 99999999984 6899998865
No 12
>PRK05713 hypothetical protein; Provisional
Probab=99.81 E-value=7.9e-20 Score=148.43 Aligned_cols=80 Identities=30% Similarity=0.633 Sum_probs=73.1
Q ss_pred CCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCCeEEEcC
Q 032269 58 GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETH 137 (144)
Q Consensus 58 ~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~~~ 137 (144)
+++ +|++++|+|||++++++||.++++|++|.||+|++++++|++.......|+++++++|+||+||+++.+|++|+++
T Consensus 7 ~~~-~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~ 85 (312)
T PRK05713 7 GER-RWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVEVF 85 (312)
T ss_pred CCe-EEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEEec
Confidence 564 7999999999999999999999999999999999999999987655567888889999999999999999999976
Q ss_pred C
Q 032269 138 K 138 (144)
Q Consensus 138 ~ 138 (144)
+
T Consensus 86 ~ 86 (312)
T PRK05713 86 D 86 (312)
T ss_pred C
Confidence 3
No 13
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.81 E-value=1.6e-19 Score=148.33 Aligned_cols=91 Identities=29% Similarity=0.518 Sum_probs=76.6
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccC--CcCCCCCccccCCCeEEeeec
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ--SEQSFLDDDQMGEGFVLTCAA 126 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~--~e~~~L~~~~~~~g~rLaCq~ 126 (144)
++|+|..+++ ...+++++|+|||++++++|+.+|++|+.|.||+|+++|++|+++. .+...|++++.++|++|+||+
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~ 82 (340)
T PRK11872 3 HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQT 82 (340)
T ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeC
Confidence 4555532334 3458899999999999999999999999999999999999999874 344568888889999999999
Q ss_pred eECCCeEEEcCCcc
Q 032269 127 YPTSDVTIETHKEE 140 (144)
Q Consensus 127 ~~~~dl~I~~~~~~ 140 (144)
++.+|++|+++.+.
T Consensus 83 ~~~~d~~i~~~~~~ 96 (340)
T PRK11872 83 RVKSDAAFYFDFDS 96 (340)
T ss_pred EECCceEEEecCcc
Confidence 99999999987543
No 14
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.80 E-value=1.7e-19 Score=126.98 Aligned_cols=85 Identities=26% Similarity=0.449 Sum_probs=68.9
Q ss_pred cCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCCcC-----CCCCcc-ccCCCeEEeeeceE
Q 032269 56 TPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQSEQ-----SFLDDD-QMGEGFVLTCAAYP 128 (144)
Q Consensus 56 ~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~-----~~L~~~-~~~~g~rLaCq~~~ 128 (144)
.+.+. ++++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|....... ..|+.. +..+++||+||+++
T Consensus 12 ~p~~~-~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~~ 90 (110)
T TIGR02007 12 CPEGA-VVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAVV 90 (110)
T ss_pred CCCCe-EEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEEE
Confidence 46664 79999999999999999999999999 799999999999996543322 223322 45678999999998
Q ss_pred C-CCeEEEcCCccc
Q 032269 129 T-SDVTIETHKEEE 141 (144)
Q Consensus 129 ~-~dl~I~~~~~~~ 141 (144)
. +|++|+++....
T Consensus 91 ~~~dl~v~~~~~~~ 104 (110)
T TIGR02007 91 ADEDLVVEIPKYTI 104 (110)
T ss_pred cCCCEEEEECchhh
Confidence 7 699999987543
No 15
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.79 E-value=3.6e-19 Score=149.40 Aligned_cols=92 Identities=23% Similarity=0.458 Sum_probs=78.5
Q ss_pred ccceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC--cCCCCCccccCCCeEE
Q 032269 47 MATYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS--EQSFLDDDQMGEGFVL 122 (144)
Q Consensus 47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rL 122 (144)
|++++|+|+.+++ .+++.+++|+|||++++++|+++++.|+ .|.||+|+|++++|.+... +...|++++.++|+||
T Consensus 27 ~~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rL 106 (405)
T TIGR01941 27 VSSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRL 106 (405)
T ss_pred cccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEE
Confidence 5566666654443 3589999999999999999999999999 6999999999999987643 4457888889999999
Q ss_pred eeeceECCCeEEEcCC
Q 032269 123 TCAAYPTSDVTIETHK 138 (144)
Q Consensus 123 aCq~~~~~dl~I~~~~ 138 (144)
+||+.+.+|++|+++.
T Consensus 107 aCq~~~~~d~~i~~~~ 122 (405)
T TIGR01941 107 SCQVKVKQDMSIEIPE 122 (405)
T ss_pred EeeCEECCCEEEEECc
Confidence 9999999999999874
No 16
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.78 E-value=9e-19 Score=128.49 Aligned_cols=92 Identities=18% Similarity=0.324 Sum_probs=77.2
Q ss_pred ceEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CCCCCCCCC-CcccccCEEEEeeCcccC------CcCCCCCcc-ccCC
Q 032269 49 TYKVKLITPGG-EEEINCPDDSFILDAAEEA-GLDLPYSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDDD-QMGE 118 (144)
Q Consensus 49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi~i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~~-~~~~ 118 (144)
.++|+|+.++| ++++++++|+|||+++.++ +++|++.|+ .|.||+|+|+|.+|..+. .|...|+.. +..+
T Consensus 35 ~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~~ 114 (143)
T PTZ00490 35 KVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKE 114 (143)
T ss_pred cEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCCC
Confidence 58899987777 4689999999999999995 799999999 999999999999875432 244567765 7889
Q ss_pred CeEEeeeceECC---CeEEEcCCcc
Q 032269 119 GFVLTCAAYPTS---DVTIETHKEE 140 (144)
Q Consensus 119 g~rLaCq~~~~~---dl~I~~~~~~ 140 (144)
++||+||..+.. +++|++++..
T Consensus 115 gsRLaCQi~v~~~ldgl~V~vp~~~ 139 (143)
T PTZ00490 115 TSRLACQVDLTPEMDGLEVELPSYV 139 (143)
T ss_pred CcEEeeeEEEecCCCCEEEEeCccc
Confidence 999999999986 4699998764
No 17
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.75 E-value=5.6e-18 Score=142.35 Aligned_cols=89 Identities=28% Similarity=0.485 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC--cCCCCCccccCCCeEEeee
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS--EQSFLDDDQMGEGFVLTCA 125 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rLaCq 125 (144)
.++|++ .++..+++++++|+|||++++++|+++++.|+ +|.||+|+|++++|.+... +...|++++.++|+||+||
T Consensus 35 ~~~i~~-~~~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq 113 (409)
T PRK05464 35 DVTIKI-NGDPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQ 113 (409)
T ss_pred cEEEEE-cCCCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEee
Confidence 356666 33212589999999999999999999999999 6999999999999987643 4556888888999999999
Q ss_pred ceECCCeEEEcCC
Q 032269 126 AYPTSDVTIETHK 138 (144)
Q Consensus 126 ~~~~~dl~I~~~~ 138 (144)
+++.+|++|+++.
T Consensus 114 ~~~~~d~~ie~~~ 126 (409)
T PRK05464 114 VKVKQDMKIEVPE 126 (409)
T ss_pred CEECCCEEEEECc
Confidence 9999999999874
No 18
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.75 E-value=1.4e-18 Score=114.37 Aligned_cols=69 Identities=39% Similarity=0.803 Sum_probs=58.5
Q ss_pred eEEEEcCCchh-HHHHHHHc-CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCe-EEeeeceEC
Q 032269 60 EEEINCPDDSF-ILDAAEEA-GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF-VLTCAAYPT 129 (144)
Q Consensus 60 ~~~i~v~~g~t-LL~a~~~~-Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~-rLaCq~~~~ 129 (144)
.++|++++|+| ||++++++ |++++++|+.|.||+|+|+|++|++ +.....+++++.++++ ||+||++|+
T Consensus 7 ~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t 78 (78)
T PF00111_consen 7 GVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT 78 (78)
T ss_dssp EEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred EEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence 35799999999 99999999 9999999998889999999999998 4335556666666665 799999885
No 19
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.71 E-value=1.5e-17 Score=133.83 Aligned_cols=93 Identities=24% Similarity=0.486 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCccc--CCcCCCCCccccCCCeEEeee
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVD--QSEQSFLDDDQMGEGFVLTCA 125 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~--~~e~~~L~~~~~~~g~rLaCq 125 (144)
..+|+| +.+..+++++++|.+||.++..+||.|++.|+ .|.||.|+|+|++|.-+ ..|...++..+.++|+||+||
T Consensus 36 d~ti~I-N~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsCQ 114 (410)
T COG2871 36 DITIKI-NGDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSCQ 114 (410)
T ss_pred ceEEEe-CCChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEEE
Confidence 467788 44445689999999999999999999999999 99999999999998655 356677888899999999999
Q ss_pred ceECCCeEEEcCCcccccC
Q 032269 126 AYPTSDVTIETHKEEELAG 144 (144)
Q Consensus 126 ~~~~~dl~I~~~~~~~~~~ 144 (144)
+.++.||.|++++ ++||
T Consensus 115 ~~Vk~dm~levpE--e~fg 131 (410)
T COG2871 115 VNVKHDMDLEVPE--EVFG 131 (410)
T ss_pred ecccccceeechH--HhcC
Confidence 9999999999976 4554
No 20
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.56 E-value=2.5e-15 Score=127.76 Aligned_cols=89 Identities=26% Similarity=0.411 Sum_probs=73.0
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC-cCCCCCccccCCCeEEeeece
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS-EQSFLDDDQMGEGFVLTCAAY 127 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~-e~~~L~~~~~~~g~rLaCq~~ 127 (144)
+-|+| .|.|+ ..+ ++|+|||+++++.|+.|.+.|+ +|.||+|+|.|.+|..... +..+ ....+..||||+||++
T Consensus 2 p~v~f-~psgk-r~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh-~k~~~~~g~rlac~~~ 77 (614)
T COG3894 2 PLVTF-MPSGK-RGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDH-EKYLRERGYRLACQAQ 77 (614)
T ss_pred ceeEe-ecCCC-cCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhH-HHHHHhhceeeeeehh
Confidence 46888 78896 577 9999999999999999999999 9999999999999985432 1111 1123445999999999
Q ss_pred ECCCeEEEcCCcccc
Q 032269 128 PTSDVTIETHKEEEL 142 (144)
Q Consensus 128 ~~~dl~I~~~~~~~~ 142 (144)
+.+|++|.+|++..+
T Consensus 78 v~gd~~i~ip~es~l 92 (614)
T COG3894 78 VLGDLVIFIPPESRL 92 (614)
T ss_pred hcCceEEEcCchhhH
Confidence 999999999987654
No 21
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.30 E-value=6.9e-12 Score=98.65 Aligned_cols=73 Identities=22% Similarity=0.535 Sum_probs=62.5
Q ss_pred ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCe
Q 032269 47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120 (144)
Q Consensus 47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~ 120 (144)
|++++|+| +|+ .|++++|+|||+|++++|+.||+.|. .|.|+.|+|+| +|. .+.
T Consensus 1 m~~v~i~i---dg~-~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~~~ 60 (234)
T PRK07569 1 MSVKTLTI---DDQ-LVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------NKL 60 (234)
T ss_pred CceEEEEE---CCE-EEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------Ccc
Confidence 55677887 675 69999999999999999999999998 89999999999 331 245
Q ss_pred EEeeeceECCCeEEEcCCc
Q 032269 121 VLTCAAYPTSDVTIETHKE 139 (144)
Q Consensus 121 rLaCq~~~~~dl~I~~~~~ 139 (144)
+.||++.+..+|+|.+..+
T Consensus 61 ~~aC~t~v~~Gm~v~t~~~ 79 (234)
T PRK07569 61 LPACVTPVAEGMVVQTNTP 79 (234)
T ss_pred ccCcCCCCCCCCEEEECCH
Confidence 6799999999999998765
No 22
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.25 E-value=8.9e-12 Score=83.41 Aligned_cols=69 Identities=29% Similarity=0.559 Sum_probs=47.8
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCC----------cccccCEEEEeeCcccCCcCCCCCccccCC
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRA----------GACSSCTGKVVSGTVDQSEQSFLDDDQMGE 118 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~----------G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~ 118 (144)
+++|+| +|+ .+++++|+|||+|++++|+.||+.|.. |.|+.|.|+|- | .
T Consensus 3 ~v~i~i---dG~-~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g----------------~ 61 (82)
T PF13510_consen 3 MVTITI---DGK-PVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-G----------------E 61 (82)
T ss_dssp EEEEEE---TTE-EEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-S----------------E
T ss_pred EEEEEE---CCE-EEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-C----------------C
Confidence 466777 675 799999999999999999999998886 99999999992 1 1
Q ss_pred CeEEeeeceECCCeEEEcCC
Q 032269 119 GFVLTCAAYPTSDVTIETHK 138 (144)
Q Consensus 119 g~rLaCq~~~~~dl~I~~~~ 138 (144)
..+.||++.+..+|.|+..+
T Consensus 62 ~~v~AC~t~v~~GM~V~T~s 81 (82)
T PF13510_consen 62 PNVRACSTPVEDGMVVETQS 81 (82)
T ss_dssp EEEETTT-B--TTEEEE---
T ss_pred cceEcccCCCcCCcEEEEeE
Confidence 23799999999999998754
No 23
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.18 E-value=7.1e-11 Score=86.88 Aligned_cols=92 Identities=28% Similarity=0.415 Sum_probs=73.0
Q ss_pred ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC------cCCCCC-ccccCCC
Q 032269 49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS------EQSFLD-DDQMGEG 119 (144)
Q Consensus 49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~-~~~~~~g 119 (144)
.++|+|+.++| ++.+....|+|||+++.++||+++..|. .-.|.+|+|.|..-.++.. |...|. .-.+.+.
T Consensus 43 ~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~t 122 (159)
T KOG3309|consen 43 DIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTET 122 (159)
T ss_pred eEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccc
Confidence 48999999998 4568889999999999999999999999 8899999999976654421 223333 1236678
Q ss_pred eEEeeeceECCC---eEEEcCCcc
Q 032269 120 FVLTCAAYPTSD---VTIETHKEE 140 (144)
Q Consensus 120 ~rLaCq~~~~~d---l~I~~~~~~ 140 (144)
.||.||.....+ ++|.+|+.-
T Consensus 123 SRLGCQI~l~keldG~~v~vP~at 146 (159)
T KOG3309|consen 123 SRLGCQIVLTKELDGMRVAVPEAT 146 (159)
T ss_pred cccceEEEeccccCCcEEECcccc
Confidence 999999998765 789888743
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.11 E-value=1.4e-10 Score=105.42 Aligned_cols=75 Identities=24% Similarity=0.485 Sum_probs=64.5
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEe
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLT 123 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa 123 (144)
.+|+| +|+ .+++++|+|||+|++++||.||+.|. .|.|+.|+|+|.+|.. +...+++++
T Consensus 2 ~~i~i---dg~-~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~-----------~~~~~~~~a 66 (847)
T PRK08166 2 ATIHV---DGK-EYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE-----------DTRGRLVMS 66 (847)
T ss_pred eEEEE---CCE-EEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc-----------cCCCCcccC
Confidence 57777 575 79999999999999999999999998 6999999999998843 123468999
Q ss_pred eeceECCCeEEEcCCc
Q 032269 124 CAAYPTSDVTIETHKE 139 (144)
Q Consensus 124 Cq~~~~~dl~I~~~~~ 139 (144)
|++.+..+|+|++..+
T Consensus 67 C~~~v~~gm~v~t~~~ 82 (847)
T PRK08166 67 CMTPATDGTFISIDDP 82 (847)
T ss_pred cCCCCCCCCEEEeCCH
Confidence 9999999999998764
No 25
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.88 E-value=4.7e-09 Score=84.91 Aligned_cols=72 Identities=25% Similarity=0.526 Sum_probs=60.1
Q ss_pred cceEEEEEcCCCeEEEEc-CCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCe
Q 032269 48 ATYKVKLITPGGEEEINC-PDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120 (144)
Q Consensus 48 ~~~~V~i~~~~g~~~i~v-~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~ 120 (144)
+.++|+| ||+ ++++ ++|+|||+|++++||.||+.|. .|.|+.|.|+| +|. .+.
T Consensus 67 ~~~~I~I---DGk-~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~---------------~~l 126 (297)
T PTZ00305 67 PRAIMFV---NKR-PVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT---------------QNL 126 (297)
T ss_pred CceEEEE---CCE-EEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC---------------cCc
Confidence 3467777 675 8999 9999999999999999999997 48899999998 322 245
Q ss_pred EEeeeceECCCeEEEcCCc
Q 032269 121 VLTCAAYPTSDVTIETHKE 139 (144)
Q Consensus 121 rLaCq~~~~~dl~I~~~~~ 139 (144)
.-||.+.+...|+|.+.++
T Consensus 127 v~AC~tpV~eGM~V~T~Se 145 (297)
T PTZ00305 127 VVSCATVALPGMSIITDSR 145 (297)
T ss_pred ccccCCcCCCCCEEEeCCH
Confidence 7799999999999998764
No 26
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.81 E-value=1.2e-08 Score=87.67 Aligned_cols=60 Identities=33% Similarity=0.556 Sum_probs=51.0
Q ss_pred EEEEcCCchhHHHHHHH------cCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCCeEE
Q 032269 61 EEINCPDDSFILDAAEE------AGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTI 134 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~------~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I 134 (144)
.++++++|+|||+++++ .++.++++|+.|.||+|.+++ +|. .+|+|++.+.++++|
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~~~~i 84 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE-----------------PVLACKTEVEDGMII 84 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe-----------------EecccccCCCCCCEE
Confidence 35667799999999995 667789999999999999996 654 478999999999999
Q ss_pred EcCC
Q 032269 135 ETHK 138 (144)
Q Consensus 135 ~~~~ 138 (144)
+...
T Consensus 85 ~~~~ 88 (486)
T PRK06259 85 EPLD 88 (486)
T ss_pred EecC
Confidence 8764
No 27
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.73 E-value=2.4e-08 Score=88.72 Aligned_cols=73 Identities=29% Similarity=0.590 Sum_probs=61.5
Q ss_pred ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCe
Q 032269 47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120 (144)
Q Consensus 47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~ 120 (144)
|++++|+| +|+ ++++++|+|||++++++|+.||..|. .|.|+.|.|++ +|. .+.
T Consensus 1 ~~~v~~~i---dg~-~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~~~ 60 (652)
T PRK12814 1 MNTISLTI---NGR-SVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------NRF 60 (652)
T ss_pred CCeEEEEE---CCE-EEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------cce
Confidence 45678888 675 89999999999999999999999997 69999999988 221 135
Q ss_pred EEeeeceECCCeEEEcCCc
Q 032269 121 VLTCAAYPTSDVTIETHKE 139 (144)
Q Consensus 121 rLaCq~~~~~dl~I~~~~~ 139 (144)
.+||++.+..+|.|.+.++
T Consensus 61 ~~aC~t~~~~Gm~v~t~~~ 79 (652)
T PRK12814 61 VPACSTAVSEGMVIETENA 79 (652)
T ss_pred ecCcCCCCCCCCEEEeCcH
Confidence 7899999999999998665
No 28
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.68 E-value=3.4e-08 Score=88.12 Aligned_cols=71 Identities=37% Similarity=0.659 Sum_probs=59.2
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEE
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVL 122 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL 122 (144)
|.||+| ||+ ++++++|+|||+|++++||+||+-|. .|.|..|.|++..+. ..+-
T Consensus 1 m~tI~I---DG~-ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~~~ 60 (693)
T COG1034 1 MVTITI---DGK-EIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KLVA 60 (693)
T ss_pred CeEEEE---CCE-EEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------cccc
Confidence 357888 675 89999999999999999999999997 588999999883321 3477
Q ss_pred eeeceECCCeEEEcCCc
Q 032269 123 TCAAYPTSDVTIETHKE 139 (144)
Q Consensus 123 aCq~~~~~dl~I~~~~~ 139 (144)
+|.+.+..+++|.+.++
T Consensus 61 SC~tpv~dGM~I~T~s~ 77 (693)
T COG1034 61 SCATPVTDGMVISTNSE 77 (693)
T ss_pred ccccccCCCeEEecCCH
Confidence 99998888999988765
No 29
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.67 E-value=4.5e-08 Score=87.61 Aligned_cols=71 Identities=35% Similarity=0.564 Sum_probs=59.7
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEe
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLT 123 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa 123 (144)
++|+| ||+ ++++++|+|||+|++++||.||+.|. .|.|+.|.|+|..+. ...+-+
T Consensus 2 ~~~~I---dg~-~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~~s 62 (687)
T PRK09130 2 VKLKV---DGK-EIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPVAS 62 (687)
T ss_pred eEEEE---CCE-EEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCcccc
Confidence 57888 675 89999999999999999999999997 799999999983210 124669
Q ss_pred eeceECCCeEEEcCCc
Q 032269 124 CAAYPTSDVTIETHKE 139 (144)
Q Consensus 124 Cq~~~~~dl~I~~~~~ 139 (144)
|.+.+...|+|.+..+
T Consensus 63 C~~~v~~gm~v~T~s~ 78 (687)
T PRK09130 63 CAMPVGEGMVIFTNTP 78 (687)
T ss_pred cCCCCCCCCEEEeCCH
Confidence 9999999999998764
No 30
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.56 E-value=1.1e-07 Score=83.71 Aligned_cols=66 Identities=32% Similarity=0.575 Sum_probs=56.1
Q ss_pred CCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC
Q 032269 58 GGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD 131 (144)
Q Consensus 58 ~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d 131 (144)
+|+ ++++++|+|||++++++||.||+.|. .|.|..|.|+| +|.. ...+.||.+.+..+
T Consensus 4 dg~-~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v-~g~~--------------~~~~~aC~~~~~~g 67 (603)
T TIGR01973 4 DGK-ELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEV-EKFP--------------DKPVASCATPVTDG 67 (603)
T ss_pred CCE-EEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEE-CCCC--------------CCcccccCCCCCCC
Confidence 675 89999999999999999999999997 79999999998 2210 02478999999999
Q ss_pred eEEEcCCc
Q 032269 132 VTIETHKE 139 (144)
Q Consensus 132 l~I~~~~~ 139 (144)
|+|.+.++
T Consensus 68 m~v~t~~~ 75 (603)
T TIGR01973 68 MKISTNSE 75 (603)
T ss_pred CEEEeCCH
Confidence 99988664
No 31
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.52 E-value=2.1e-07 Score=84.16 Aligned_cols=70 Identities=26% Similarity=0.549 Sum_probs=59.4
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEe
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLT 123 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa 123 (144)
++|+| ||+ ++++++|+|||+|++++|+.||+.|. .|.|..|.|++ +|. ...+.|
T Consensus 2 ~~~~i---dg~-~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~---------------~~~~~a 61 (776)
T PRK09129 2 VEIEI---DGK-KVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA---------------PKPLPA 61 (776)
T ss_pred eEEEE---CCE-EEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC---------------CCcCcc
Confidence 57788 675 89999999999999999999999998 58999999998 221 124779
Q ss_pred eeceECCCeEEEcCCc
Q 032269 124 CAAYPTSDVTIETHKE 139 (144)
Q Consensus 124 Cq~~~~~dl~I~~~~~ 139 (144)
|.+.+..+|+|.+..+
T Consensus 62 C~~~~~~gm~v~t~~~ 77 (776)
T PRK09129 62 CATPVTDGMKVFTRSE 77 (776)
T ss_pred cCCCCCCCCEEEcCCH
Confidence 9999999999988764
No 32
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.49 E-value=2.8e-07 Score=83.86 Aligned_cols=68 Identities=24% Similarity=0.502 Sum_probs=57.4
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEe
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLT 123 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa 123 (144)
++|+| +|+ ++++++|+|||++++++|+.||+.|. .|.|+.|.|+| +|. .++|
T Consensus 2 v~i~I---dG~-~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~~A 59 (819)
T PRK08493 2 ITITI---NGK-ECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RVYS 59 (819)
T ss_pred eEEEE---CCE-EEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------Eecc
Confidence 57888 675 79999999999999999999998884 58999999988 221 1679
Q ss_pred eeceECCCeEEEcCCc
Q 032269 124 CAAYPTSDVTIETHKE 139 (144)
Q Consensus 124 Cq~~~~~dl~I~~~~~ 139 (144)
|++.+...|+|.+..+
T Consensus 60 C~t~v~dGM~V~T~s~ 75 (819)
T PRK08493 60 CNTKAKEGMNILTNTP 75 (819)
T ss_pred ccCCCCCCCEEEecCH
Confidence 9999999999988654
No 33
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.45 E-value=3.7e-07 Score=82.91 Aligned_cols=69 Identities=26% Similarity=0.574 Sum_probs=59.0
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEE
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVL 122 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL 122 (144)
+++|+| ||+ ++++++|+|||+|++++||.||+.|. .|.|..|.|+| +|. ...+-
T Consensus 4 ~v~~~i---dg~-~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~---------------~~~~~ 63 (797)
T PRK07860 4 LVTLTI---DGV-EVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ---------------RKPQA 63 (797)
T ss_pred eEEEEE---CCE-EEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC---------------ccccc
Confidence 467888 675 89999999999999999999999997 69999999999 221 12466
Q ss_pred eeeceECCCeEEEcC
Q 032269 123 TCAAYPTSDVTIETH 137 (144)
Q Consensus 123 aCq~~~~~dl~I~~~ 137 (144)
||.+.+..+|+|+..
T Consensus 64 aC~t~v~~gm~V~t~ 78 (797)
T PRK07860 64 SCTTTVTDGMVVKTQ 78 (797)
T ss_pred ccCCCCCCCcEEEeC
Confidence 999999999999986
No 34
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.37 E-value=7.8e-07 Score=62.73 Aligned_cols=53 Identities=30% Similarity=0.551 Sum_probs=39.3
Q ss_pred EEEEcCCchhHHHHHHH------cCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC
Q 032269 61 EEINCPDDSFILDAAEE------AGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD 131 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~------~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d 131 (144)
++++++++.|+|++|.. .-+...++|+.|+||+|.++| .|. -+|||.+.+...
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~~ 79 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI-NGR-----------------PRLACKTQVDDL 79 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE-TTE-----------------EEEGGGSBGGGC
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE-CCc-----------------eecceeeEchhc
Confidence 46888999999999974 256678999999999999998 222 388888887543
No 35
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.25 E-value=1.5e-06 Score=69.21 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=42.2
Q ss_pred EEEEcCCchhHHHHHHHc-------------CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeece
Q 032269 61 EEINCPDDSFILDAAEEA-------------GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAY 127 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~-------------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~ 127 (144)
++++++++.|||++|..- -+.+.++|+.|+||+|.++| .|. -+|||+++
T Consensus 25 y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I-NG~-----------------p~LAC~t~ 86 (249)
T PRK08640 25 FEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI-NGK-----------------PRQACTAL 86 (249)
T ss_pred EEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE-CCc-----------------cchhhhCh
Confidence 456677999999999843 25678899999999999998 332 26888777
Q ss_pred EC---CCeEEE
Q 032269 128 PT---SDVTIE 135 (144)
Q Consensus 128 ~~---~dl~I~ 135 (144)
+. +.++|+
T Consensus 87 v~~~~~~i~ie 97 (249)
T PRK08640 87 IDQLEQPIRLE 97 (249)
T ss_pred HHHcCCcEEEE
Confidence 63 345554
No 36
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.24 E-value=1.5e-06 Score=68.87 Aligned_cols=57 Identities=23% Similarity=0.484 Sum_probs=43.3
Q ss_pred EEEEcCCchhHHHHHHHc------CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECC----
Q 032269 61 EEINCPDDSFILDAAEEA------GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTS---- 130 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~---- 130 (144)
++++++++.|||++|..- -+.+.++|+.|+||+|.++| .|. -+|||.+.+..
T Consensus 26 y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~~~~~ 87 (239)
T PRK13552 26 YQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI-NGR-----------------PTLACRTLTSDYPDG 87 (239)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE-CCe-----------------EhhhhhccHhhcCCC
Confidence 467777999999999753 25678999999999999998 332 37888887653
Q ss_pred CeEEE
Q 032269 131 DVTIE 135 (144)
Q Consensus 131 dl~I~ 135 (144)
.++|+
T Consensus 88 ~i~ie 92 (239)
T PRK13552 88 VITLM 92 (239)
T ss_pred cEEEE
Confidence 45555
No 37
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=98.18 E-value=9e-06 Score=63.52 Aligned_cols=49 Identities=31% Similarity=0.599 Sum_probs=38.6
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCc
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGT 102 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~ 102 (144)
++++| || .++++++++++||++++++ |+ ..+++|+.|.||.|.| +++|.
T Consensus 52 i~~~V---NG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~ 103 (217)
T PRK11433 52 VTLKV---NGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGR 103 (217)
T ss_pred EEEEE---CCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCE
Confidence 44444 45 4578999999999999985 44 4789999999999999 55664
No 38
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.17 E-value=4.4e-06 Score=66.67 Aligned_cols=38 Identities=21% Similarity=0.634 Sum_probs=33.8
Q ss_pred EEEEcCCchhHHHHHHHcCC------CCCCCCCCcccccCEEEE
Q 032269 61 EEINCPDDSFILDAAEEAGL------DLPYSCRAGACSSCTGKV 98 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi------~i~~~C~~G~CgtC~v~v 98 (144)
++++++++.|||++|+.-+. .+.++|+.|.||+|.+.|
T Consensus 22 y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I 65 (251)
T PRK12386 22 YTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI 65 (251)
T ss_pred EEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE
Confidence 56788899999999999664 678999999999999998
No 39
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.11 E-value=3.4e-06 Score=66.98 Aligned_cols=58 Identities=26% Similarity=0.466 Sum_probs=42.2
Q ss_pred EEEEcCCchhHHHHHHHc------CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC---CC
Q 032269 61 EEINCPDDSFILDAAEEA------GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT---SD 131 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~---~d 131 (144)
+.++++++.|||+++... .+...++|+.|+||+|.++|- |. .+|||++.+. +.
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~In-G~-----------------~~laC~t~~~~~~~~ 88 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVN-NV-----------------PKLACKTFLRDYTGG 88 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceEC-cc-----------------ChhhHhhHHHHcCCC
Confidence 457778999999999653 345568999999999999993 42 2567777665 24
Q ss_pred eEEEc
Q 032269 132 VTIET 136 (144)
Q Consensus 132 l~I~~ 136 (144)
++|+.
T Consensus 89 ~~ieP 93 (244)
T PRK12385 89 MKVEA 93 (244)
T ss_pred eEEee
Confidence 56553
No 40
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.08 E-value=7.7e-06 Score=67.52 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=34.1
Q ss_pred EEEEcCCchhHHHHHHHcCCCCC------CCCCCcccccCEEEE
Q 032269 61 EEINCPDDSFILDAAEEAGLDLP------YSCRAGACSSCTGKV 98 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi~i~------~~C~~G~CgtC~v~v 98 (144)
+++++++|+|||+++...++.++ .+|+.|.||+|.|+|
T Consensus 21 ~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i 64 (329)
T PRK12577 21 YTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI 64 (329)
T ss_pred EEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE
Confidence 57889999999999999998874 468899999999999
No 41
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=98.05 E-value=1.3e-05 Score=59.87 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=41.0
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHcCC-CCCCCCCCcccccCEEEEeeCc
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEAGL-DLPYSCRAGACSSCTGKVVSGT 102 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi-~i~~~C~~G~CgtC~v~v~~G~ 102 (144)
.|+|..++..++++++++++||+.+++.|+ ....+|+.|.||.|.|.| +|.
T Consensus 8 ~i~~~vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~ 59 (159)
T PRK09908 8 TIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGT 59 (159)
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCc
Confidence 344433333567889999999999999887 689999999999999987 554
No 42
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=98.04 E-value=1.2e-05 Score=72.38 Aligned_cols=68 Identities=25% Similarity=0.598 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEE
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVL 122 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL 122 (144)
+++|+| +|+ ++++++|+|||+++.++||.||+-|. -+.|.+|.|.+ +|. ..-
T Consensus 5 ~i~vti---dg~-~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG~-----------------l~r 62 (978)
T COG3383 5 MITVTI---DGR-SIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DGK-----------------LVR 62 (978)
T ss_pred eEEEEE---CCe-EEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cCc-----------------eec
Confidence 467788 675 89999999999999999999999997 38899999985 554 234
Q ss_pred eeeceECCCeEEEcCC
Q 032269 123 TCAAYPTSDVTIETHK 138 (144)
Q Consensus 123 aCq~~~~~dl~I~~~~ 138 (144)
+|-+.+...++|....
T Consensus 63 sCsT~v~dGm~v~t~s 78 (978)
T COG3383 63 SCSTPVEDGMVVRTNS 78 (978)
T ss_pred cccccccCCcEEeccc
Confidence 6666666666666544
No 43
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.95 E-value=6.3e-06 Score=64.23 Aligned_cols=40 Identities=35% Similarity=0.606 Sum_probs=33.4
Q ss_pred EEEEcCCchhHHHHHHHcC------CCCCCCCCCcccccCEEEEeeC
Q 032269 61 EEINCPDDSFILDAAEEAG------LDLPYSCRAGACSSCTGKVVSG 101 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~G------i~i~~~C~~G~CgtC~v~v~~G 101 (144)
+++++++|+|||+++.+.+ +....+|+.|.||+|.|+| .|
T Consensus 17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG 62 (220)
T TIGR00384 17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NG 62 (220)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CC
Confidence 4678889999999999855 3456899999999999987 45
No 44
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.94 E-value=7e-06 Score=65.47 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=39.7
Q ss_pred EEEE-cCCchhHHHHHHHc----------CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceE
Q 032269 61 EEIN-CPDDSFILDAAEEA----------GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP 128 (144)
Q Consensus 61 ~~i~-v~~g~tLL~a~~~~----------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~ 128 (144)
++|+ ++++.|||++|..- .+.+.++|+.|+||+|.++| .|... |. -.-+|||++.+
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I-NG~p~------~~-----~~~~LAC~t~~ 88 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI-NGRPH------GP-----DRGTTTCQLHM 88 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE-CCccC------CC-----Ccccchhhhhh
Confidence 3455 55899999999742 36788999999999999998 44431 11 11278888765
No 45
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.83 E-value=1.8e-05 Score=64.02 Aligned_cols=50 Identities=28% Similarity=0.562 Sum_probs=37.6
Q ss_pred EEEcC--C-chhHHHHHHHc------CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269 62 EINCP--D-DSFILDAAEEA------GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT 129 (144)
Q Consensus 62 ~i~v~--~-g~tLL~a~~~~------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~ 129 (144)
+|+++ + +.|||+++..- -+.+.++|+.|+||+|.++| .|. -+|||++++.
T Consensus 63 ~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I-NG~-----------------p~LAC~t~v~ 121 (276)
T PLN00129 63 SYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI-DGK-----------------NTLACLTKID 121 (276)
T ss_pred EEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE-CCc-----------------ccccccccHh
Confidence 44554 3 79999999762 24578999999999999998 332 4788888765
No 46
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.82 E-value=4.9e-05 Score=56.23 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=39.1
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCc
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGT 102 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~ 102 (144)
++++ ++..++++++++++||+.+++. |+ ....+|+.|.||.|.|.| +|.
T Consensus 3 ~~~v--NG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~ 53 (148)
T TIGR03193 3 RLTV--NGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR 53 (148)
T ss_pred EEEE--CCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence 4555 3334578899999999999974 75 589999999999999988 553
No 47
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.82 E-value=2.3e-05 Score=61.97 Aligned_cols=57 Identities=26% Similarity=0.454 Sum_probs=40.3
Q ss_pred EEEcCC-chhHHHHHHHc-----CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC---CCe
Q 032269 62 EINCPD-DSFILDAAEEA-----GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT---SDV 132 (144)
Q Consensus 62 ~i~v~~-g~tLL~a~~~~-----Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~---~dl 132 (144)
++++.+ +.|||++|..- .+.+.++|+.|+||+|.++| .|. -+|||++++. .++
T Consensus 26 ~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i-NG~-----------------~~LaC~t~~~~~~~~i 87 (235)
T PRK12575 26 EIAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI-NGR-----------------NGLACLTNMQALPREI 87 (235)
T ss_pred EecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE-CCe-----------------EcchhhCcHhHcCCCE
Confidence 344444 46899998753 34567899999999999998 332 5888888775 445
Q ss_pred EEEc
Q 032269 133 TIET 136 (144)
Q Consensus 133 ~I~~ 136 (144)
+|+.
T Consensus 88 ~ieP 91 (235)
T PRK12575 88 VLRP 91 (235)
T ss_pred EEeE
Confidence 6653
No 48
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.81 E-value=4.1e-05 Score=61.92 Aligned_cols=40 Identities=20% Similarity=0.373 Sum_probs=34.0
Q ss_pred EEEEcCCchhHHHHHHHcCCCC------CCCCCCcccccCEEEEeeC
Q 032269 61 EEINCPDDSFILDAAEEAGLDL------PYSCRAGACSSCTGKVVSG 101 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v~~G 101 (144)
+.+++++|+|||+++.+.+..+ .++|+.|.||+|.|+| .|
T Consensus 27 ~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG 72 (279)
T PRK12576 27 YKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NG 72 (279)
T ss_pred EEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CC
Confidence 4688899999999999976543 5789999999999999 44
No 49
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.79 E-value=2.7e-05 Score=61.15 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=34.4
Q ss_pred EEEEcC-CchhHHHHHHHcC-CC-----CCCCCCCcccccCEEEEeeCc
Q 032269 61 EEINCP-DDSFILDAAEEAG-LD-----LPYSCRAGACSSCTGKVVSGT 102 (144)
Q Consensus 61 ~~i~v~-~g~tLL~a~~~~G-i~-----i~~~C~~G~CgtC~v~v~~G~ 102 (144)
++++++ +++|||++|.+.+ .. ..++|+.|.||+|.|+| .|.
T Consensus 20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~ 67 (232)
T PRK05950 20 YEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGK 67 (232)
T ss_pred EEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCc
Confidence 468888 9999999999987 33 36789999999999999 553
No 50
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.78 E-value=2.8e-05 Score=61.45 Aligned_cols=38 Identities=32% Similarity=0.548 Sum_probs=31.7
Q ss_pred EEEEcCCchhHHHHHHH------cCCCCCCCCCCcccccCEEEE
Q 032269 61 EEINCPDDSFILDAAEE------AGLDLPYSCRAGACSSCTGKV 98 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~------~Gi~i~~~C~~G~CgtC~v~v 98 (144)
++++.++|.|||++|.. ..+.+.++|+.|+||+|.+.|
T Consensus 22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I 65 (234)
T COG0479 22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI 65 (234)
T ss_pred EEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE
Confidence 35666699999999975 245678999999999999988
No 51
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=97.69 E-value=2e-05 Score=63.37 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=49.3
Q ss_pred cccccccchHHHhcCCcccccCCCCCceeeeccCCcCCCCccccccceEEE-EEcCCCeEEEEcCCchhHHHHHH
Q 032269 3 TLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVK-LITPGGEEEINCPDDSFILDAAE 76 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~F~~~~~~~~~~~~m~~~~V~-i~~~~g~~~i~v~~g~tLL~a~~ 76 (144)
-+|||..|+.+++..+.+.+... .++|+|.|+........ ..... + ..++. .+.+++|+||||+++
T Consensus 200 y~CGp~~fm~av~~~l~~~g~~~-~~vh~E~F~~~~~~~~~-----~~~~~~~-~~s~~-~~~~~~g~t~lea~~ 266 (266)
T COG1018 200 YLCGPGPFMQAVRLALEALGVPD-DRVHLEGFGPMLKDTAA-----LLPFTTL-ARSGK-EVRVPPGQTLLEAAE 266 (266)
T ss_pred EEECCHHHHHHHHHHHHHcCCCh-hcEEEeecCCCCccccc-----cccchhh-ccccc-eEecCCCchHHHhhC
Confidence 37999999999999999877777 99999999987522100 01111 3 44564 799999999999874
No 52
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.42 E-value=0.00043 Score=51.40 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=38.9
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCc
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGT 102 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~ 102 (144)
++++| ++..+++.++++++|++.+++. |+ ....+|+.|.||.|.|.| +|.
T Consensus 4 i~f~v--NG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~ 55 (151)
T TIGR03198 4 FRFTV--NGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK 55 (151)
T ss_pred EEEEE--CCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence 45556 2334567888999999999984 76 478899999999999988 553
No 53
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.30 E-value=0.00072 Score=50.35 Aligned_cols=51 Identities=25% Similarity=0.517 Sum_probs=40.1
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCc
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGT 102 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~ 102 (144)
+++++| ++..++++++++++||+++++. |+ ...++|+.|.||.|-|.+ +|+
T Consensus 3 ~i~ltv--NG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv-DG~ 55 (156)
T COG2080 3 PITLTV--NGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV-DGE 55 (156)
T ss_pred cEEEEE--CCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE-CCe
Confidence 355666 2335679999999999999954 55 478999999999999977 664
No 54
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.80 E-value=0.0019 Score=55.76 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=34.2
Q ss_pred eEEE-EcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269 60 EEEI-NCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV 98 (144)
Q Consensus 60 ~~~i-~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v 98 (144)
.+++ +++++++||+.++++ |+ ....+|+.|.||.|.|.|
T Consensus 9 ~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~ 50 (467)
T TIGR02963 9 TVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV 50 (467)
T ss_pred EEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence 4567 589999999999975 76 589999999999999998
No 55
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=96.69 E-value=0.0032 Score=58.02 Aligned_cols=47 Identities=28% Similarity=0.588 Sum_probs=39.7
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHH-cCC-CCCCCCCCcccccCEEEEeeCc
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEE-AGL-DLPYSCRAGACSSCTGKVVSGT 102 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~-~Gi-~i~~~C~~G~CgtC~v~v~~G~ 102 (144)
++++ ||. +++++++++||+.|++ .|+ ....+|+.|.||.|.|.| +|.
T Consensus 2 ~~~~---ng~-~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~ 50 (848)
T TIGR03311 2 EFIV---NGR-EVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGK 50 (848)
T ss_pred EEEE---CCE-EeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCe
Confidence 4666 565 7999999999999997 486 689999999999999988 554
No 56
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.60 E-value=0.0044 Score=57.87 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=38.4
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCC-CCCC-CCCcccccCEEEEeeCc
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLD-LPYS-CRAGACSSCTGKVVSGT 102 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~-i~~~-C~~G~CgtC~v~v~~G~ 102 (144)
++++| ++..++++++++++||+.|++.|+. .... |+.|.||.|.|.| +|.
T Consensus 3 i~~~v--Ng~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~ 54 (956)
T PRK09800 3 IHFTL--NGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGN 54 (956)
T ss_pred EEEEE--CCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCe
Confidence 34555 3335678899999999999997764 5566 7899999999988 554
No 57
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=96.46 E-value=0.0046 Score=54.03 Aligned_cols=42 Identities=26% Similarity=0.559 Sum_probs=37.1
Q ss_pred CCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEee
Q 032269 58 GGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVS 100 (144)
Q Consensus 58 ~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~ 100 (144)
++. .+.|++|.|+|+|+...|++||-.|. .|.|..|.|+|..
T Consensus 38 d~~-~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek 85 (708)
T KOG2282|consen 38 DDQ-SVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK 85 (708)
T ss_pred CCe-eEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence 564 79999999999999999999999997 5889999888843
No 58
>PLN00192 aldehyde oxidase
Probab=95.95 E-value=0.015 Score=56.05 Aligned_cols=48 Identities=15% Similarity=0.369 Sum_probs=37.6
Q ss_pred eEEEEEcCCCeEEE-EcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEe
Q 032269 50 YKVKLITPGGEEEI-NCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 50 ~~V~i~~~~g~~~i-~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~ 99 (144)
.++++ ++..+++ .+++++|||+.++++ |+ ....+|+.|.||.|-|.|-
T Consensus 6 i~~~v--Ng~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v~ 56 (1344)
T PLN00192 6 LVFAV--NGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLS 56 (1344)
T ss_pred EEEEE--CCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEEe
Confidence 34444 3334456 589999999999975 76 5899999999999999993
No 59
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=95.72 E-value=0.015 Score=54.29 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=35.6
Q ss_pred eEEEEcCCchhHHHHHHHcCCC-CCC-CCCCcccccCEEEEeeCc
Q 032269 60 EEEINCPDDSFILDAAEEAGLD-LPY-SCRAGACSSCTGKVVSGT 102 (144)
Q Consensus 60 ~~~i~v~~g~tLL~a~~~~Gi~-i~~-~C~~G~CgtC~v~v~~G~ 102 (144)
.++++++++++||+.|++.|+. +.. .|+.|.||.|.|.| +|.
T Consensus 7 ~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~ 50 (951)
T TIGR03313 7 PQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGV 50 (951)
T ss_pred EEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCe
Confidence 4578899999999999998764 676 69999999999988 554
No 60
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=95.50 E-value=0.021 Score=55.12 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=37.2
Q ss_pred eEEEEEcCCCeE--EEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEe
Q 032269 50 YKVKLITPGGEE--EINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 50 ~~V~i~~~~g~~--~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~ 99 (144)
+++++ ||+. ...+++++|||+.|++. |+ ....+|+.|.||.|-|.|-
T Consensus 3 ~~~~~---Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~ 53 (1330)
T TIGR02969 3 LLFYV---NGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS 53 (1330)
T ss_pred EEEEE---CCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence 34555 4532 34789999999999974 76 5899999999999999884
No 61
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.19 E-value=0.088 Score=49.37 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=54.5
Q ss_pred ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCC-----C------CCCCcccccCEEEEeeCcccCCcCCCCCccc
Q 032269 47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLP-----Y------SCRAGACSSCTGKVVSGTVDQSEQSFLDDDQ 115 (144)
Q Consensus 47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~-----~------~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~ 115 (144)
-..++++| +|+ .+++.+|+||..|++.+|+.+- + -|..|.|-.|.|+|-.|..
T Consensus 10 ~~~~~~~~---dg~-~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~------------ 73 (985)
T TIGR01372 10 SRPLRFTF---DGK-SYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQ------------ 73 (985)
T ss_pred CCeEEEEE---CCE-EeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcC------------
Confidence 34456666 675 7999999999999999998642 1 3777889999999943311
Q ss_pred cCCCeEEeeeceECCCeEEEcCC
Q 032269 116 MGEGFVLTCAAYPTSDVTIETHK 138 (144)
Q Consensus 116 ~~~g~rLaCq~~~~~dl~I~~~~ 138 (144)
....+.||++.+..+|+|+...
T Consensus 74 -~~~~~~ac~~~~~~gm~~~~~~ 95 (985)
T TIGR01372 74 -REPNTRATTQELYDGLVATSQN 95 (985)
T ss_pred -CCCCccceeEEcccCCEEeccc
Confidence 0112568999888888887643
No 62
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=95.14 E-value=0.0084 Score=46.52 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=22.7
Q ss_pred hhHHHHHHHcCCC------CCCCCCCcccccCEEEEe
Q 032269 69 SFILDAAEEAGLD------LPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 69 ~tLL~a~~~~Gi~------i~~~C~~G~CgtC~v~v~ 99 (144)
+.+.+++++.|++ -...|+.|.||.|.|...
T Consensus 180 ~~~~~~L~~~g~~~~i~~e~f~~cg~g~C~~C~v~~~ 216 (233)
T cd06220 180 YKVLEILDERGVRAQFSLERYMKCGIGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHHhcCCcEEEEecccccCcCCCcCccEeccC
Confidence 4566666667763 134799999999999974
No 63
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=94.66 E-value=0.065 Score=42.27 Aligned_cols=32 Identities=31% Similarity=0.648 Sum_probs=25.0
Q ss_pred CchhHHHHHHH--cCC----CCCCCCCCcccccCEEEE
Q 032269 67 DDSFILDAAEE--AGL----DLPYSCRAGACSSCTGKV 98 (144)
Q Consensus 67 ~g~tLL~a~~~--~Gi----~i~~~C~~G~CgtC~v~v 98 (144)
=|--+|||+.+ +.. -+.-+|+.|+||+|...+
T Consensus 75 CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI 112 (288)
T KOG3049|consen 75 CGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI 112 (288)
T ss_pred cchHHHHHHHHhhcccCCceehhhhhhccccccceecc
Confidence 36689999975 333 356799999999999987
No 64
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=92.15 E-value=0.41 Score=40.82 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=36.3
Q ss_pred eEEEEEcCCCe-EEEEcCCchhHHHHHH-HcCC-CCCCCCCCcccccCEEEE
Q 032269 50 YKVKLITPGGE-EEINCPDDSFILDAAE-EAGL-DLPYSCRAGACSSCTGKV 98 (144)
Q Consensus 50 ~~V~i~~~~g~-~~i~v~~g~tLL~a~~-~~Gi-~i~~~C~~G~CgtC~v~v 98 (144)
.+|.|..++.. ..-.+++..||||.++ +.++ .-.-+|..|-||.|.|-|
T Consensus 7 ~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlV 58 (493)
T COG4630 7 NTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV 58 (493)
T ss_pred ceeEEEecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEE
Confidence 45666444442 2346799999999998 5555 367789999999999976
No 65
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=88.85 E-value=0.51 Score=36.93 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=23.8
Q ss_pred hHHHHHHHcCCCC------CCCCCCcccccCEEEEeeC
Q 032269 70 FILDAAEEAGLDL------PYSCRAGACSSCTGKVVSG 101 (144)
Q Consensus 70 tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v~~G 101 (144)
.+.+.+++.|++. ...|+.|.|+.|.++. .|
T Consensus 194 ~~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~-~~ 230 (248)
T cd06219 194 AVSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTV-GG 230 (248)
T ss_pred HHHHHHHHcCCCEEEEecccccCccceeeeEEEEe-CC
Confidence 3556666788863 5679999999999986 44
No 66
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=87.80 E-value=0.39 Score=37.60 Aligned_cols=31 Identities=19% Similarity=0.493 Sum_probs=23.1
Q ss_pred hHHHHHHHcCCCC------CCCCCCcccccCEEEEee
Q 032269 70 FILDAAEEAGLDL------PYSCRAGACSSCTGKVVS 100 (144)
Q Consensus 70 tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v~~ 100 (144)
.+.++++++|++. ...|+.|.||+|.+.+..
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~ 231 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCGIGACGACVCDTET 231 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCC
Confidence 4556667788743 457999999999998644
No 67
>PLN02906 xanthine dehydrogenase
Probab=86.81 E-value=0.67 Score=45.03 Aligned_cols=32 Identities=28% Similarity=0.604 Sum_probs=27.9
Q ss_pred chhHHHHHHHcCC-CCCCCCCCcccccCEEEEe
Q 032269 68 DSFILDAAEEAGL-DLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 68 g~tLL~a~~~~Gi-~i~~~C~~G~CgtC~v~v~ 99 (144)
++|||+.|++.|+ ....+|+.|.||.|.|.|-
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVS 33 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence 4689999998665 4789999999999999985
No 68
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=86.70 E-value=0.79 Score=35.84 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=24.6
Q ss_pred hhHHHHHHHcCCCC------CCCCCCcccccCEEEEee
Q 032269 69 SFILDAAEEAGLDL------PYSCRAGACSSCTGKVVS 100 (144)
Q Consensus 69 ~tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v~~ 100 (144)
+.+.+.+++.|++. +..|+.|.||.|+....+
T Consensus 193 ~~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~~ 230 (246)
T cd06218 193 KAVAELAAERGVPCQVSLEERMACGIGACLGCVVKTKD 230 (246)
T ss_pred HHHHHHHHhcCCCEEEEecccccCccceecccEEEeec
Confidence 35566677788863 567999999999998854
No 69
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=84.18 E-value=0.69 Score=37.18 Aligned_cols=33 Identities=18% Similarity=0.475 Sum_probs=25.6
Q ss_pred hhHHHHHHHcCCC---------CCCCCCCcccccCEEEEeeC
Q 032269 69 SFILDAAEEAGLD---------LPYSCRAGACSSCTGKVVSG 101 (144)
Q Consensus 69 ~tLL~a~~~~Gi~---------i~~~C~~G~CgtC~v~v~~G 101 (144)
+.+.+.+++.|++ -...|+.|.||.|+|....|
T Consensus 225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~ 266 (289)
T PRK08345 225 KFVFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTS 266 (289)
T ss_pred HHHHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCc
Confidence 4577777788885 24579999999999987554
No 70
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=83.96 E-value=1.9 Score=41.29 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=31.0
Q ss_pred EcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEee
Q 032269 64 NCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVS 100 (144)
Q Consensus 64 ~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~ 100 (144)
.++++.||+..++++ ++ .....|+.|.||.|.|-|-.
T Consensus 16 ~vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 16 LLPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSK 54 (1257)
T ss_pred cCCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEec
Confidence 478999999999875 54 47899999999999998844
No 71
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=81.08 E-value=0.98 Score=26.01 Aligned_cols=18 Identities=39% Similarity=0.911 Sum_probs=14.0
Q ss_pred CCCCCcccccCEEEEeeC
Q 032269 84 YSCRAGACSSCTGKVVSG 101 (144)
Q Consensus 84 ~~C~~G~CgtC~v~v~~G 101 (144)
..|+.|.|+.|.+....+
T Consensus 4 M~CG~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 4 MACGVGACGGCVVPVKDG 21 (40)
T ss_dssp -SSSSSSS-TTEEECSST
T ss_pred ccCCCcEeCCcEeeeecC
Confidence 479999999999988654
No 72
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=80.01 E-value=3.6 Score=25.47 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=23.2
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
+|++ +|+ .++++++.||.+++...|++.
T Consensus 2 ~i~v---NG~-~~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 2 NIQL---NGE-PRELPDGESVAALLAREGLAG 29 (66)
T ss_pred EEEE---CCe-EEEcCCCCCHHHHHHhcCCCC
Confidence 5777 565 789999999999999988754
No 73
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=79.67 E-value=1.8 Score=34.64 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=22.0
Q ss_pred HHHHHHHcCCCC------CCCCCCcccccCEEEE
Q 032269 71 ILDAAEEAGLDL------PYSCRAGACSSCTGKV 98 (144)
Q Consensus 71 LL~a~~~~Gi~i------~~~C~~G~CgtC~v~v 98 (144)
+.+.+++.|+++ ...|+.|.|+.|.++.
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~ 229 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTV 229 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEE
Confidence 556667778753 4579999999999985
No 74
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=78.48 E-value=1.7 Score=34.13 Aligned_cols=29 Identities=21% Similarity=0.565 Sum_probs=22.6
Q ss_pred hhHHHHHHHcCCC---C------CCCCCCcccccCEEE
Q 032269 69 SFILDAAEEAGLD---L------PYSCRAGACSSCTGK 97 (144)
Q Consensus 69 ~tLL~a~~~~Gi~---i------~~~C~~G~CgtC~v~ 97 (144)
+.+.+++++.|++ + ...|+.|.||.|+|.
T Consensus 203 ~~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 203 RFVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 4567778888886 3 346889999999997
No 75
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=77.44 E-value=6.3 Score=24.98 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=26.1
Q ss_pred ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
|.+.+|++.......+++++++.|+.+.+.+.+++.
T Consensus 2 ~~mm~v~vng~~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 2 MLMIRVKVIGRGIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred ceEEEEEEeccccceEEEcCCCCcHHHHHHHcCCCC
Confidence 456788883222234688899999999999988754
No 76
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=75.22 E-value=5.2 Score=25.90 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=18.2
Q ss_pred EcCCC-eEEEEcCCchhHHHHHHH
Q 032269 55 ITPGG-EEEINCPDDSFILDAAEE 77 (144)
Q Consensus 55 ~~~~g-~~~i~v~~g~tLL~a~~~ 77 (144)
..|+| ...+.+.+|+||.|++..
T Consensus 5 ~LPng~~t~V~vrpg~ti~d~L~~ 28 (72)
T cd01760 5 YLPNGQRTVVPVRPGMSVRDVLAK 28 (72)
T ss_pred ECcCCCeEEEEECCCCCHHHHHHH
Confidence 34666 457999999999998875
No 77
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=74.83 E-value=1.8 Score=34.20 Aligned_cols=27 Identities=19% Similarity=0.512 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCC---------CCCCCCcccccCEEE
Q 032269 71 ILDAAEEAGLDL---------PYSCRAGACSSCTGK 97 (144)
Q Consensus 71 LL~a~~~~Gi~i---------~~~C~~G~CgtC~v~ 97 (144)
+.+.+.+.|++- .-.|+.|.||.|+|.
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 205 TVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 555666788752 346999999999886
No 78
>PRK07440 hypothetical protein; Provisional
Probab=72.82 E-value=9.6 Score=24.27 Aligned_cols=29 Identities=17% Similarity=0.436 Sum_probs=23.7
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
.+|++ +|+ .++++++.||.+.+.+.+++.
T Consensus 5 m~i~v---NG~-~~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 5 ITLQV---NGE-TRTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred eEEEE---CCE-EEEcCCCCCHHHHHHHcCCCC
Confidence 56777 565 699999999999999888854
No 79
>PRK05802 hypothetical protein; Provisional
Probab=72.51 E-value=2.7 Score=34.54 Aligned_cols=28 Identities=25% Similarity=0.680 Sum_probs=21.0
Q ss_pred HHHHHHH--cCCCC------CCCCCCcccccCEEEE
Q 032269 71 ILDAAEE--AGLDL------PYSCRAGACSSCTGKV 98 (144)
Q Consensus 71 LL~a~~~--~Gi~i------~~~C~~G~CgtC~v~v 98 (144)
+.+.+.+ .||.. ...|+.|.||.|.++.
T Consensus 269 v~~~l~~~~~~i~~~~Sle~~M~CG~G~Cg~C~v~~ 304 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNAKMCCGEGICGACTVRY 304 (320)
T ss_pred HHHHHhhhcCCceEEEeCCCeeeCcCccCCeeEEEE
Confidence 4455555 67754 5679999999999996
No 80
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=71.16 E-value=3.9 Score=37.28 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=23.2
Q ss_pred hHHHHHHHcCCCC------CCCCCCcccccCEEEE
Q 032269 70 FILDAAEEAGLDL------PYSCRAGACSSCTGKV 98 (144)
Q Consensus 70 tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v 98 (144)
.+.+.+++.|++. ...|+.|.||.|.++.
T Consensus 195 ~v~~~l~~~gv~~~~Sle~~M~CG~G~C~~C~v~~ 229 (752)
T PRK12778 195 FVCLLTKKYGIPTIVSLNTIMVDGTGMCGACRVTV 229 (752)
T ss_pred HHHHHHHHcCCCEEEeCcccccCcccccCcceeEe
Confidence 3556667788876 6789999999999964
No 81
>PRK01777 hypothetical protein; Validated
Probab=70.79 E-value=12 Score=25.50 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=20.6
Q ss_pred EEEEcCCchhHHHHHHHcCCCCCC
Q 032269 61 EEINCPDDSFILDAAEEAGLDLPY 84 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi~i~~ 84 (144)
..+++++|.|+-+++.+.||...+
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~ 42 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELR 42 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccC
Confidence 468899999999999999996543
No 82
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=69.96 E-value=11 Score=23.41 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=23.1
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
+|++ +|+ ..+++++.||.+.+...+++.
T Consensus 2 ~i~v---NG~-~~~~~~~~tl~~ll~~l~~~~ 29 (65)
T PRK05863 2 IVVV---NEE-QVEVDEQTTVAALLDSLGFPE 29 (65)
T ss_pred EEEE---CCE-EEEcCCCCcHHHHHHHcCCCC
Confidence 5777 564 688999999999999988854
No 83
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=67.38 E-value=4 Score=32.31 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=21.1
Q ss_pred hHHHHHHHcCCC---------CCCCCCCcccccCEEE
Q 032269 70 FILDAAEEAGLD---------LPYSCRAGACSSCTGK 97 (144)
Q Consensus 70 tLL~a~~~~Gi~---------i~~~C~~G~CgtC~v~ 97 (144)
.+.+.+++.|++ -...|+.|.||.|++.
T Consensus 206 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 206 FTVLEFLKRGIKEENIWVSYERKMCCGVGKCGHCKID 242 (263)
T ss_pred HHHHHHHHcCCCHHHEEEEecceeEccCcccCCcccC
Confidence 456666778885 2346999999999986
No 84
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=66.91 E-value=1.3 Score=35.51 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=25.1
Q ss_pred ccccccchHHHhcCCcccccCCCCCceeee
Q 032269 4 LSSAMVSTSFIRSKPTATSLKAMPNMGQAI 33 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~ 33 (144)
+|||..|++.+.+.+...+++. ++||++.
T Consensus 217 iCGP~~m~~~v~~~L~~~Gv~~-~~i~~~l 245 (289)
T PRK08345 217 ICGPPVMYKFVFKELINRGYRP-ERIYVTL 245 (289)
T ss_pred EECCHHHHHHHHHHHHHcCCCH-HHEEEEe
Confidence 7999999999999998877777 8888775
No 85
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=66.35 E-value=13 Score=24.65 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=24.7
Q ss_pred ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCC
Q 032269 47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLD 81 (144)
Q Consensus 47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~ 81 (144)
|.+.+|+| +|+ ..+++++.||.+.+...+++
T Consensus 16 ~~~m~I~V---NG~-~~~~~~~~tl~~LL~~l~~~ 46 (84)
T PRK06083 16 MVLITISI---NDQ-SIQVDISSSLAQIIAQLSLP 46 (84)
T ss_pred CceEEEEE---CCe-EEEcCCCCcHHHHHHHcCCC
Confidence 44678888 565 78999999999999987764
No 86
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=64.34 E-value=9.6 Score=23.40 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=23.0
Q ss_pred cCCCeEEEEcCCchhHHHHHHHcCCCCCCCC
Q 032269 56 TPGGEEEINCPDDSFILDAAEEAGLDLPYSC 86 (144)
Q Consensus 56 ~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C 86 (144)
.|+|. ..+++.|.|.+|+|..-+-.+...+
T Consensus 5 lpdG~-~~~~~~g~T~~d~A~~I~~~l~~~~ 34 (60)
T PF02824_consen 5 LPDGS-IKELPEGSTVLDVAYSIHSSLAKRA 34 (60)
T ss_dssp ETTSC-EEEEETTBBHHHHHHHHSHHHHHCE
T ss_pred CCCCC-eeeCCCCCCHHHHHHHHCHHHHhhe
Confidence 47886 6889999999999997765554444
No 87
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=63.65 E-value=15 Score=22.49 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=22.4
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHcCCC
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEAGLD 81 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~ 81 (144)
+|+| +|+ .++++++.||.+.+...++.
T Consensus 2 ~i~v---Ng~-~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 2 DIQL---NQQ-TLSLPDGATVADALAAYGAR 28 (65)
T ss_pred EEEE---CCE-EEECCCCCcHHHHHHhhCCC
Confidence 5777 565 79999999999999988875
No 88
>smart00455 RBD Raf-like Ras-binding domain.
Probab=63.45 E-value=14 Score=23.65 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=17.5
Q ss_pred cCCC-eEEEEcCCchhHHHHHHH
Q 032269 56 TPGG-EEEINCPDDSFILDAAEE 77 (144)
Q Consensus 56 ~~~g-~~~i~v~~g~tLL~a~~~ 77 (144)
.|+| ...+.+.+|+||.|++..
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~ 28 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAK 28 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHH
Confidence 4666 457899999999998874
No 89
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=61.03 E-value=5.1 Score=30.95 Aligned_cols=16 Identities=38% Similarity=0.972 Sum_probs=14.1
Q ss_pred CCCCCCcccccCEEEE
Q 032269 83 PYSCRAGACSSCTGKV 98 (144)
Q Consensus 83 ~~~C~~G~CgtC~v~v 98 (144)
...|+.|.||.|.+..
T Consensus 213 ~m~Cg~G~C~~C~~~~ 228 (243)
T cd06192 213 PMCCGIGICGACTIET 228 (243)
T ss_pred cccCccccccceEEEe
Confidence 4579999999999985
No 90
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=58.22 E-value=15 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=18.1
Q ss_pred cCC-CeEEEEcCCchhHHHHHHHc
Q 032269 56 TPG-GEEEINCPDDSFILDAAEEA 78 (144)
Q Consensus 56 ~~~-g~~~i~v~~g~tLL~a~~~~ 78 (144)
.|+ +...+++.+|+||-|++.++
T Consensus 6 LPnqQrT~V~vrpG~tl~daL~Ka 29 (74)
T cd01816 6 LPNKQRTVVNVRPGMTLRDALAKA 29 (74)
T ss_pred CCCCCeEEEEecCCcCHHHHHHHH
Confidence 455 45579999999999988764
No 91
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=56.93 E-value=29 Score=22.17 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=24.3
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
.+|.+ +|+ .++++++.|+.+.+.+.|++.
T Consensus 3 m~i~~---ng~-~~e~~~~~tv~dLL~~l~~~~ 31 (68)
T COG2104 3 MTIQL---NGK-EVEIAEGTTVADLLAQLGLNP 31 (68)
T ss_pred EEEEE---CCE-EEEcCCCCcHHHHHHHhCCCC
Confidence 46666 464 799999999999999999987
No 92
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=55.56 E-value=30 Score=21.45 Aligned_cols=28 Identities=7% Similarity=0.214 Sum_probs=22.6
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
+|+| +|+ .++++++.||.+.+...++..
T Consensus 2 ~i~v---Ng~-~~~~~~~~tl~~ll~~l~~~~ 29 (66)
T PRK08053 2 QILF---NDQ-PMQCAAGQTVHELLEQLNQLQ 29 (66)
T ss_pred EEEE---CCe-EEEcCCCCCHHHHHHHcCCCC
Confidence 5777 565 799999999999998877754
No 93
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=54.46 E-value=12 Score=35.28 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=22.7
Q ss_pred hHHHHHHHcCCCC------CCCCCCcccccCEEEE
Q 032269 70 FILDAAEEAGLDL------PYSCRAGACSSCTGKV 98 (144)
Q Consensus 70 tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v 98 (144)
.+.+.+++.|++. ...|+.|.|+.|.|.+
T Consensus 861 av~~~l~~~Gv~~~vSlE~~M~CG~G~C~~C~v~~ 895 (944)
T PRK12779 861 AVSDLTKPYGVKTVASLNSIMVDATGMCGACMVPV 895 (944)
T ss_pred HHHHHHHHcCCCeEEeecccccCCCeeeCeeeeee
Confidence 3556667788864 5689999999999985
No 94
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=52.88 E-value=6.6 Score=37.46 Aligned_cols=33 Identities=24% Similarity=0.760 Sum_probs=23.7
Q ss_pred CCCCCC-CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC
Q 032269 82 LPYSCR-AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD 131 (144)
Q Consensus 82 i~~~C~-~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d 131 (144)
-+..|. .|.||.|++++ .|+ ..++++|.- +.-|
T Consensus 970 s~M~c~m~giC~qC~~~~-~G~---------------~k~vfaC~~-~~~~ 1003 (1028)
T PRK06567 970 SSMQCMMKGICGQCIQKV-KGE---------------QKYIFACSQ-QNQN 1003 (1028)
T ss_pred cHHHHHhhhhhhhheEEe-cCe---------------eEEEEEecC-CCCc
Confidence 356799 99999999998 443 236788876 4433
No 95
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=52.41 E-value=27 Score=22.26 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=17.1
Q ss_pred cCCC-eEEEEcCCchhHHHHHHHc
Q 032269 56 TPGG-EEEINCPDDSFILDAAEEA 78 (144)
Q Consensus 56 ~~~g-~~~i~v~~g~tLL~a~~~~ 78 (144)
.|+| ...+.+.+|+||-|++...
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~ 30 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKA 30 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHH
Confidence 4677 4568999999999988753
No 96
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=49.65 E-value=14 Score=35.08 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=20.9
Q ss_pred HHHHHHHcCCC------CCCCCCCcccccCEEEE
Q 032269 71 ILDAAEEAGLD------LPYSCRAGACSSCTGKV 98 (144)
Q Consensus 71 LL~a~~~~Gi~------i~~~C~~G~CgtC~v~v 98 (144)
+.+.++..|++ -...|+.|.||.|+|++
T Consensus 196 v~~~~~~~gi~~~vSle~~M~cG~G~Cg~C~v~~ 229 (1006)
T PRK12775 196 CVETTRPFGVKTMVSLNAIMVDGTGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHCCCcEEECChhheeCccceeCCCEeee
Confidence 44555667873 24679999999999975
No 97
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=49.00 E-value=25 Score=23.54 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=17.9
Q ss_pred EEEEcCCchhHHHHHHHcCCC
Q 032269 61 EEINCPDDSFILDAAEEAGLD 81 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi~ 81 (144)
..+++++|.|+.+|++++|+.
T Consensus 16 ~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 16 LTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEETT-BHHHHHHHHTHH
T ss_pred EEEECCCcCcHHHHHHHcCch
Confidence 468899999999999999985
No 98
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=42.42 E-value=39 Score=20.70 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.7
Q ss_pred CCeEEEEcCCchhHHHHHHHcCCC
Q 032269 58 GGEEEINCPDDSFILDAAEEAGLD 81 (144)
Q Consensus 58 ~g~~~i~v~~g~tLL~a~~~~Gi~ 81 (144)
+|+ .++++++.||.+.+...+++
T Consensus 4 Ng~-~~~~~~~~tv~~ll~~l~~~ 26 (64)
T TIGR01683 4 NGE-PVEVEDGLTLAALLESLGLD 26 (64)
T ss_pred CCe-EEEcCCCCcHHHHHHHcCCC
Confidence 464 79999999999999998876
No 99
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=42.15 E-value=50 Score=20.20 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=21.6
Q ss_pred EEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 52 VKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 52 V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
|+| +|+ .++++++.|+.+.+...+++.
T Consensus 2 i~i---Ng~-~~~~~~~~tv~~ll~~l~~~~ 28 (65)
T cd00565 2 ITV---NGE-PREVEEGATLAELLEELGLDP 28 (65)
T ss_pred EEE---CCe-EEEcCCCCCHHHHHHHcCCCC
Confidence 556 464 799999999999999988653
No 100
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=42.06 E-value=44 Score=18.99 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=18.9
Q ss_pred CCeEEEEcCCchhHHHHHHHcCCCCC
Q 032269 58 GGEEEINCPDDSFILDAAEEAGLDLP 83 (144)
Q Consensus 58 ~g~~~i~v~~g~tLL~a~~~~Gi~i~ 83 (144)
+|+..-......|+-+++.++||.+.
T Consensus 7 dG~~~~v~T~a~tV~~~L~~~gI~l~ 32 (43)
T PF03990_consen 7 DGKEKTVYTTASTVGDALKELGITLG 32 (43)
T ss_pred CCEEEEEEeCCCCHHHHHHhCCCCCC
Confidence 56422333677899999999999873
No 101
>PRK06437 hypothetical protein; Provisional
Probab=41.40 E-value=64 Score=20.15 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.3
Q ss_pred EEEEcCCchhHHHHHHHcCCCC
Q 032269 61 EEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
++++++++.|+.+.+.+.|++.
T Consensus 13 ~~~~i~~~~tv~dLL~~Lgi~~ 34 (67)
T PRK06437 13 KTIEIDHELTVNDIIKDLGLDE 34 (67)
T ss_pred eEEEcCCCCcHHHHHHHcCCCC
Confidence 5799999999999999998853
No 102
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=40.61 E-value=65 Score=20.10 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=21.8
Q ss_pred EEEEEcCCCeEEEEcCCc-hhHHHHHHHcCCCC
Q 032269 51 KVKLITPGGEEEINCPDD-SFILDAAEEAGLDL 82 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g-~tLL~a~~~~Gi~i 82 (144)
+|++ +|+ ..+++++ .||.+.+...|++.
T Consensus 2 ~I~v---NG~-~~~~~~~~~tv~~lL~~l~~~~ 30 (67)
T PRK07696 2 NLKI---NGN-QIEVPESVKTVAELLTHLELDN 30 (67)
T ss_pred EEEE---CCE-EEEcCCCcccHHHHHHHcCCCC
Confidence 5677 565 6889888 68999999888763
No 103
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=37.93 E-value=56 Score=21.29 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=17.2
Q ss_pred cCCC-eEEEEcCCchhHHHHHHH
Q 032269 56 TPGG-EEEINCPDDSFILDAAEE 77 (144)
Q Consensus 56 ~~~g-~~~i~v~~g~tLL~a~~~ 77 (144)
.||| ...+.+.+|+||-|++.+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~k 28 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSG 28 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHH
Confidence 4666 457999999999888764
No 104
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=37.40 E-value=22 Score=21.47 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=18.0
Q ss_pred EEEcCCchhHHHHHHHcCCCCCC
Q 032269 62 EINCPDDSFILDAAEEAGLDLPY 84 (144)
Q Consensus 62 ~i~v~~g~tLL~a~~~~Gi~i~~ 84 (144)
.++++.|.||+|++..+|-..+.
T Consensus 13 ~~~~~~g~tl~~~i~~AGG~~~~ 35 (59)
T PF10531_consen 13 TYELPPGTTLSDAIAQAGGLTPR 35 (59)
T ss_dssp EEEEETT-BHHHHHHCTTSBBTT
T ss_pred EEEECCCCcHHHHHHHhCCCCCC
Confidence 58888899999999988766554
No 105
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=35.54 E-value=54 Score=28.40 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=25.4
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCC
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYS 85 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~ 85 (144)
.|.+ +|+ +++++.|.||-||++..|...+-+
T Consensus 3 ~V~V---nGe-ev~lp~gsTlrdalea~ga~y~eg 33 (512)
T COG4070 3 SVEV---NGE-EVTLPAGSTLRDALEASGASYIEG 33 (512)
T ss_pred EEEE---CCe-EecCCCcchHHHHHHhcCCcccCC
Confidence 4666 575 899999999999999999876543
No 106
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=34.51 E-value=72 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=19.7
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHH
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAE 76 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~ 76 (144)
..|+|..++|.+.|++++..|+-+...
T Consensus 5 milRvrS~dG~~Rie~~~~~t~~~L~~ 31 (80)
T PF11543_consen 5 MILRVRSKDGMKRIEVSPSSTLSDLKE 31 (80)
T ss_dssp -EEEEE-SSEEEEEEE-TTSBHHHHHH
T ss_pred EEEEEECCCCCEEEEcCCcccHHHHHH
Confidence 468887888977899999998877654
No 107
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=33.96 E-value=40 Score=22.25 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=13.4
Q ss_pred EEEcCCchhHHHHHHHcCCCC
Q 032269 62 EINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 62 ~i~v~~g~tLL~a~~~~Gi~i 82 (144)
++.|..|+||-....+.|++.
T Consensus 4 ~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 4 EYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp EEE--TT--HHHHHHHTT--H
T ss_pred EEEECCCCcHHHHHHHcCCCH
Confidence 688999999999999999874
No 108
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=33.55 E-value=31 Score=24.95 Aligned_cols=29 Identities=28% Similarity=0.622 Sum_probs=21.6
Q ss_pred CchhHHHHHHHcCCCC--CCCCC---CcccccCE
Q 032269 67 DDSFILDAAEEAGLDL--PYSCR---AGACSSCT 95 (144)
Q Consensus 67 ~g~tLL~a~~~~Gi~i--~~~C~---~G~CgtC~ 95 (144)
.-.-|++.+.+.|+++ .++|. ...||+|.
T Consensus 125 ~K~ei~~~~~~~g~~~~~s~sC~~~~~~~CG~C~ 158 (169)
T cd01995 125 SKAEIVRLGGELGVPLELTWSCYNGGEKHCGECD 158 (169)
T ss_pred CHHHHHHHHhHcCCChhheeeccCCCCCCCCCCH
Confidence 4567888888999964 67898 34788885
No 109
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=31.80 E-value=11 Score=29.64 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=20.0
Q ss_pred ccccccchHHHhcCCcccccCCCCCce
Q 032269 4 LSSAMVSTSFIRSKPTATSLKAMPNMG 30 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~ 30 (144)
+|||..|.+++++.+...+++. .+||
T Consensus 195 lCGp~~mv~~~~~~L~~~Gv~~-~~i~ 220 (261)
T TIGR02911 195 VVGPPIMMKFTVQELLKKGIKE-ENIW 220 (261)
T ss_pred EECCHHHHHHHHHHHHHcCCCH-HHEE
Confidence 7999999999999887765555 4443
No 110
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=31.66 E-value=71 Score=20.27 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=16.7
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHH
Q 032269 51 KVKLITPGGEEEINCPDDSFILDA 74 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a 74 (144)
+|+++..+..+.+++++.+|+.+.
T Consensus 2 ~i~vk~~g~~~~v~v~~~~Tv~~l 25 (74)
T cd01813 2 PVIVKWGGQEYSVTTLSEDTVLDL 25 (74)
T ss_pred EEEEEECCEEEEEEECCCCCHHHH
Confidence 455544444567899999999764
No 111
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=29.07 E-value=56 Score=17.86 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=12.4
Q ss_pred EcCCchhHHHHHHHcCCCC
Q 032269 64 NCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 64 ~v~~g~tLL~a~~~~Gi~i 82 (144)
.|.+|+|+-..+.+.|+.+
T Consensus 2 ~V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp EE-TT--HHHHHHHTTS-H
T ss_pred EECcCCcHHHHHhhhhhhH
Confidence 5788999999999987754
No 112
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=28.98 E-value=90 Score=20.59 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=16.5
Q ss_pred CCC-eEEEEcCCchhHHHHHHH
Q 032269 57 PGG-EEEINCPDDSFILDAAEE 77 (144)
Q Consensus 57 ~~g-~~~i~v~~g~tLL~a~~~ 77 (144)
|+| ...+.+.+++|++|.+..
T Consensus 7 Pn~~~~~v~vrp~~tv~dvLe~ 28 (77)
T cd01818 7 PDNQPVLTYLRPGMSVEDFLES 28 (77)
T ss_pred CCCceEEEEECCCCCHHHHHHH
Confidence 455 457889999999998864
No 113
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=27.49 E-value=96 Score=18.77 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=17.6
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHH
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAE 76 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~ 76 (144)
+|+++..+...++++++..|+-+.-.
T Consensus 2 ~i~vk~~g~~~~i~v~~~~tv~~lK~ 27 (71)
T cd01812 2 RVRVKHGGESHDLSISSQATFGDLKK 27 (71)
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHH
Confidence 56665543356788999999877543
No 114
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=27.25 E-value=82 Score=19.85 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=12.7
Q ss_pred eEEEEcCCchhHHHHHHHc
Q 032269 60 EEEINCPDDSFILDAAEEA 78 (144)
Q Consensus 60 ~~~i~v~~g~tLL~a~~~~ 78 (144)
+..+.+.++.+|.+++.++
T Consensus 8 r~~vkvtp~~~l~~VL~ea 26 (65)
T PF11470_consen 8 RFKVKVTPNTTLNQVLEEA 26 (65)
T ss_dssp EEEE---TTSBHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHH
Confidence 5678899999998888764
No 115
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=26.88 E-value=1.1e+02 Score=18.75 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=17.7
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHH
Q 032269 51 KVKLITPGGEEEINCPDDSFILDA 74 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a 74 (144)
+|+|+...|...+++++..|+-+.
T Consensus 2 ~i~vk~~~g~~~l~v~~~~TV~~l 25 (71)
T cd01808 2 KVTVKTPKDKEEIEIAEDASVKDF 25 (71)
T ss_pred EEEEEcCCCCEEEEECCCChHHHH
Confidence 466665666557999999998874
No 116
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=26.84 E-value=55 Score=26.03 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=21.5
Q ss_pred eEEEEcCCchhHHHHHHHcCCCCC
Q 032269 60 EEEINCPDDSFILDAAEEAGLDLP 83 (144)
Q Consensus 60 ~~~i~v~~g~tLL~a~~~~Gi~i~ 83 (144)
-+++.|+.|.||.+..+++++++.
T Consensus 159 wqsy~V~~G~TLaQlFRdn~Lpit 182 (242)
T COG3061 159 WQSYTVPQGKTLAQLFRDNNLPIT 182 (242)
T ss_pred ceeEEecCCccHHHHHhccCCChH
Confidence 358999999999999999999874
No 117
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=26.73 E-value=14 Score=28.88 Aligned_cols=29 Identities=3% Similarity=0.109 Sum_probs=23.9
Q ss_pred ccccccchHHHhcCCcccccCCCCCceeee
Q 032269 4 LSSAMVSTSFIRSKPTATSLKAMPNMGQAI 33 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~ 33 (144)
+|||..|...+.+.+...+.+. .+||.-.
T Consensus 195 icGp~~mv~~~~~~L~~~Gv~~-~~i~~~~ 223 (253)
T cd06221 195 VCGPPIMMRFVAKELLKLGVPE-EQIWVSL 223 (253)
T ss_pred EECCHHHHHHHHHHHHHcCCCH-HHEEEeh
Confidence 7999999999999998877776 6777654
No 118
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=26.37 E-value=44 Score=17.86 Aligned_cols=18 Identities=17% Similarity=0.339 Sum_probs=14.0
Q ss_pred cCCchhHHHHHHHcCCCC
Q 032269 65 CPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 65 v~~g~tLL~a~~~~Gi~i 82 (144)
+.+|+||-..+.+.|+.+
T Consensus 1 v~~gdtl~~IA~~~~~~~ 18 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDF 18 (44)
T ss_pred CCCCCCHHHHHHHHCcCH
Confidence 457889999888887754
No 119
>PRK05783 hypothetical protein; Provisional
Probab=26.20 E-value=97 Score=20.64 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
.++|.|.... .+.=|.|++|..++...|+.-
T Consensus 4 k~~V~V~lK~---gVlDPqG~aI~~aL~~lg~~~ 34 (84)
T PRK05783 4 YVELIIINKD---SVRDPEGETIQRYVIERYTGN 34 (84)
T ss_pred EEEEEEEECC---CCcCchHHHHHHHHHHcCCCC
Confidence 3455553333 356789999999998888754
No 120
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=26.18 E-value=16 Score=28.86 Aligned_cols=28 Identities=11% Similarity=0.072 Sum_probs=21.9
Q ss_pred ccccccchHHHhcCCcccccCCCCCceee
Q 032269 4 LSSAMVSTSFIRSKPTATSLKAMPNMGQA 32 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e 32 (144)
+|||..|..++.+.+...+++. .+||.-
T Consensus 197 lCGp~~mv~~~~~~L~~~Gv~~-~~i~~~ 224 (263)
T PRK08221 197 VVGPPIMMKFTVLEFLKRGIKE-ENIWVS 224 (263)
T ss_pred EECCHHHHHHHHHHHHHcCCCH-HHEEEE
Confidence 7999999999999888766665 555543
No 121
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=26.02 E-value=34 Score=21.28 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=16.3
Q ss_pred hhHHHHHHHcCCC----CCCCCCCcccccCEE
Q 032269 69 SFILDAAEEAGLD----LPYSCRAGACSSCTG 96 (144)
Q Consensus 69 ~tLL~a~~~~Gi~----i~~~C~~G~CgtC~v 96 (144)
+.+|+.+.+.|.- .+..| .|.|+.|.-
T Consensus 32 e~mL~~l~~kG~I~~~~~~~~~-~~~C~~C~~ 62 (69)
T PF09012_consen 32 EAMLEQLIRKGYIRKVDMSSCC-GGSCSSCGP 62 (69)
T ss_dssp HHHHHHHHCCTSCEEEEEE--S-SSSSSS-SS
T ss_pred HHHHHHHHHCCcEEEecCCCCC-CCCCCCCCC
Confidence 5677777777773 23344 788888863
No 122
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=26.01 E-value=53 Score=25.82 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=19.0
Q ss_pred hhHHHHHHHcC-CC----CCCCCCCc----ccccCEEE
Q 032269 69 SFILDAAEEAG-LD----LPYSCRAG----ACSSCTGK 97 (144)
Q Consensus 69 ~tLL~a~~~~G-i~----i~~~C~~G----~CgtC~v~ 97 (144)
.-|.+.+.+.| ++ .-++|..| .||+|-.-
T Consensus 166 ~eI~~l~~~lg~v~~~~~~T~SCy~g~~g~~CG~C~sC 203 (231)
T PRK11106 166 AETWALADYYGQLDLVRHETLTCYNGIKGDGCGHCAAC 203 (231)
T ss_pred HHHHHHHHHcCCcccccCceeeccCcCCCCCCCCCHHH
Confidence 44666667788 54 46789854 67777543
No 123
>PRK00969 hypothetical protein; Provisional
Probab=25.31 E-value=1.2e+02 Score=27.01 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=27.7
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR 87 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~ 87 (144)
..|.+ ||. .+++++|.||=|++..+|.+..-++-
T Consensus 2 m~V~v---ng~-~~~v~~g~Tl~Dal~~s~~~y~~g~~ 35 (508)
T PRK00969 2 MSVKV---NGE-EVTVPEGSTLKDALKASGAPYIEGTN 35 (508)
T ss_pred eEEEE---CCE-EeecCCCCcHHHHHhhcCCCcCCCCE
Confidence 36777 565 79999999999999999888776654
No 124
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=24.06 E-value=78 Score=16.16 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=16.1
Q ss_pred EEEcCCchhHHHHHHHcCCCC
Q 032269 62 EINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 62 ~i~v~~g~tLL~a~~~~Gi~i 82 (144)
.+.+..|+|+-..+.+.|+..
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCH
Confidence 356788899998888877654
No 125
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=23.56 E-value=1.7e+02 Score=18.49 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=17.7
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHH
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDA 74 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a 74 (144)
.+|+|+...| ...+++++..|+.+.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~L 27 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDL 27 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHH
Confidence 4677765555 445788999998874
No 126
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=22.44 E-value=73 Score=22.92 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=13.0
Q ss_pred cccceEEEEEcCCC-eEEEEcCC
Q 032269 46 AMATYKVKLITPGG-EEEINCPD 67 (144)
Q Consensus 46 ~m~~~~V~i~~~~g-~~~i~v~~ 67 (144)
||+.|+||+ || .+.+++++
T Consensus 1 mmk~~~itv---ng~~y~V~vee 20 (130)
T PRK06549 1 MLRKFKITI---DGKEYLVEMEE 20 (130)
T ss_pred CCceEEEEE---CCEEEEEEEEE
Confidence 577899999 45 45566655
No 127
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=22.38 E-value=1.8e+02 Score=19.06 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.0
Q ss_pred EEEEcCCchhHHHHHHHcCCCCC
Q 032269 61 EEINCPDDSFILDAAEEAGLDLP 83 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi~i~ 83 (144)
....++++.||=+..++.|++..
T Consensus 25 ~~~~~~~~~tvkd~IEsLGVP~t 47 (81)
T PF14451_consen 25 FTHPFDGGATVKDVIESLGVPHT 47 (81)
T ss_pred eEEecCCCCcHHHHHHHcCCChH
Confidence 45788999999999999999864
No 128
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=22.25 E-value=39 Score=26.00 Aligned_cols=29 Identities=28% Similarity=0.704 Sum_probs=16.3
Q ss_pred CCchhHHHHHHHcCCC--CCCCCCCc-----ccccCE
Q 032269 66 PDDSFILDAAEEAGLD--LPYSCRAG-----ACSSCT 95 (144)
Q Consensus 66 ~~g~tLL~a~~~~Gi~--i~~~C~~G-----~CgtC~ 95 (144)
..++.+ ..+.+.|++ .-++|..| .||+|.
T Consensus 162 tK~eiv-~~~~~lg~~~~~T~SCy~~~~~~~~CG~C~ 197 (209)
T PF06508_consen 162 TKAEIV-KLGVELGVPLELTWSCYRGGEKGKHCGRCP 197 (209)
T ss_dssp -HHHHH-HHHHHTTHHHHH-B-STTS--BTTTTSSSH
T ss_pred CHHHHH-HHHHHcCCCHHHccCCCCCCCCCCCCCCCH
Confidence 344444 444667754 46899966 788884
No 129
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=22.17 E-value=69 Score=23.98 Aligned_cols=28 Identities=43% Similarity=0.848 Sum_probs=19.5
Q ss_pred chhHHHHHHHcC---C--CCCCCCCC---cccccCE
Q 032269 68 DSFILDAAEEAG---L--DLPYSCRA---GACSSCT 95 (144)
Q Consensus 68 g~tLL~a~~~~G---i--~i~~~C~~---G~CgtC~ 95 (144)
-.-|++.+++.| + ...++|.. ..||+|.
T Consensus 161 K~eI~~la~~~g~~~~~~~~t~sC~~~~~~~CG~C~ 196 (201)
T TIGR00364 161 KAEIVQLADELGVLDLVIKLTYSCYAGGGEGCGKCP 196 (201)
T ss_pred HHHHHHHHHHcCCccccHhhCCcCCCcCCCCCCCCh
Confidence 345778888899 5 45788982 3677774
No 130
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=21.44 E-value=1.5e+02 Score=19.84 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCC
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLD 81 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~ 81 (144)
.++|.|.... .+.=|.|++|..++...|..
T Consensus 3 ~v~V~V~lK~---~VlDPqG~ti~~aL~~lg~~ 32 (83)
T COG1828 3 KVRVYVTLKP---GVLDPEGETIEKALHRLGYN 32 (83)
T ss_pred EEEEEEEeCC---cccCchhHHHHHHHHHcCCc
Confidence 3455553333 35678999999999999876
No 131
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=20.93 E-value=2e+02 Score=18.80 Aligned_cols=27 Identities=7% Similarity=0.034 Sum_probs=18.5
Q ss_pred eEEEEEcCCCe-EEEEc--CCchhHHHHHH
Q 032269 50 YKVKLITPGGE-EEINC--PDDSFILDAAE 76 (144)
Q Consensus 50 ~~V~i~~~~g~-~~i~v--~~g~tLL~a~~ 76 (144)
++|+|+.+++. ..|++ ++..|+.+.=.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~ 31 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKT 31 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHH
Confidence 57788776763 23555 89999998644
No 132
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=20.83 E-value=43 Score=23.15 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=8.9
Q ss_pred ccccCEEEEee
Q 032269 90 ACSSCTGKVVS 100 (144)
Q Consensus 90 ~CgtC~v~v~~ 100 (144)
.||||+|---.
T Consensus 69 ECGTCRvlc~~ 79 (99)
T COG2440 69 ECGTCRVLCPH 79 (99)
T ss_pred eccceeEecCC
Confidence 59999997754
No 133
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=20.54 E-value=1.3e+02 Score=17.30 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=19.6
Q ss_pred cCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 56 TPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 56 ~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
.++|. .++++.|.|+.+.+...+..+
T Consensus 5 ~~~g~-~~~~~~~~t~~~~~~~~~~~~ 30 (60)
T cd01668 5 TPKGE-IIELPAGATVLDFAYAIHTEI 30 (60)
T ss_pred CCCCC-EEEcCCCCCHHHHHHHHChHh
Confidence 45675 689999999999887655444
No 134
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=20.48 E-value=1.8e+02 Score=16.76 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=15.6
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHH
Q 032269 51 KVKLITPGGEEEINCPDDSFILDA 74 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a 74 (144)
+|.|+..++...+++++..|+-+.
T Consensus 2 ~i~vk~~~~~~~~~v~~~~tv~~l 25 (64)
T smart00213 2 ELTVKTLDGTITLEVKPSDTVSEL 25 (64)
T ss_pred EEEEEECCceEEEEECCCCcHHHH
Confidence 345544444567889999888653
Done!